lowQualScore : 111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 222222222222222222222222222222222222222 333333333 33 55555555555555555555555555555555 3333 111 333333333333 3333333333333333 111111111 77777777777777777777 1 777777777777777777777 2222222222222222222 11111 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 11 11111 1111 5555555555555 222 777777777777777777777777777777777777 3333333
lowQualScore : 5 888888888888888888888888888888888888888 8 6 555555555 5 00 3 0 4 3 99999999999999999999999999999999 5 0000 111 666666666666 4 5 77 77 8 0 0 888 5 0 3 7 3 7777777777777777 2 1 1 5 999999999 33 22222222222222222222 1 5 000000000000000000000 8888888888888888888 00000 5 5 5 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 66 55 44444 2 2222 5 00 8888888888888 111 6 6 6 8 111111111111111111111111111111111111 9 8 88 8888888
lowQualScore : . ....................................... . . ......... . .. . . . . ................................ . .... ... ............ . . .. .. . . . ... . . . . . ................ . . . . ......... .. .................... . . ..................... ................... ..... . . . ................................................................................................ .. .. ..... . .... . .. ............. ... . . . . .................................... . . .. .......
lowQualScore : 0 222222222222222222222222222222222222222 0 7 666666666 0 00 9 1 4 7 11111111111111111111111111111111 7 4444 777 555555555555 0 4 99 99 6 3 7 888 0 9 2 0 4 1111111111111111 2 4 2 0 444444444 22 88888888888888888888 0 0 444444444444444444444 2222222222222222222 66666 9 0 0 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 99 66 33333 1 1111 3 44 0000000000000 777 0 7 0 0 888888888888888888888888888888888888 6 0 88 6666666
consensus : TTAAATGTCATTATACGTCATTTCTATATTGGAAAGTTTA--TGAACATTNTTAA-A-ATCAAAGTACTTN----AA-GTACTGAAACCTGGGCAAACAATNGTCAAGT-AGAAATGAAATAATAA-GNNTTT--G--TCAGATGTANCCCGGAACA-TTAT-TATATAAGCATAC---TGATA---A--GTGATNTAGTAGAGGTTACTATTTA--CAAAC--CGNTGTTTGTTGTATGGGTAC---AAC-AAAATACATAAGACAGGATAATATTTTATTTTA-----------TTTG-TTAGAATGTTTAA-CTG----T-A--AAATAATAC--GTTTCAT--A-GTT---CAGTCTCCAAGATG------ATAGA---T------TTATATAT-TTTCAAA---------AGAAA---G-TTCAATCTCCAAGTNAAA-T-GTTATA-----GTTTCA---AAGACAGTTGA-CAATCTCCCGGATGAT---CT-CATA-GCGC-ACATATAAAAATC-AAT-ACCTCC-----AAGTTTAC--ATTACT-----GTNTA-TA-TTNAAAAAA-C-TCA-------AAAA-TGATCTAA-ATGTGTATA-TTTGAAA-GAAAA------AAAAG-GTCT----T-----TAAATT-GAAT-TATAT--AT-TTTTTAAAAA
Reference ( gi|1 ) : TTAAATCTCATT------TATTTTTCTATTG-AAGGTTTAGGTGAA-ATTCTTAA-A-ATCAAAGTAGATA----AA-GTACTGAAACCTGCTCAAACAATGGTCAAGT-AGAAATGAAATAATAATGAGTGT--G--TCAGATGTATCCCGGAACAGTTAT-TATATATTCATAC---TGGTC---A--GTTATATAGTAGAGGTTACTATTTA--CAAAC--CGTTGTTTGTTGTATGGGTAC---AAC-AAAATACATAAGACAGGATGATATTTTATTTTA-----------TTTG-TTAAAATGTTTAA-CTG----T-A--AAATAATAT--GTTTTAT--ACTTT---CAGTTTCCAACATG------AT------T------TTATATAT-TTTCAAA---------AGAAA---G-TTCAATCTCCAAGTAAAA-T-GTTATAATCATGTTTCA---AAGACAGTTGAACAATCTCCAAGATGAT---CAACATAGGTGC-ACATATAAAAATT-AAT-ATTTTA-----AAGATTAC--ATTCCT-----GTTTA-TA-TTAAAAAAA---TGA-------AAAA-T-ACCTAA-ATGTGCATA-TTTAAAAAGAAAA------AAAAG-ATCT----G-----TAAGTT-AAAT-TATATA-AT-TATCTAAAAATC
gi|2 : TTAAATGTCATTATACGTCATTTCTATATTGGAAAGTTTA----------TTTAT-A-ATCAAAGTACTTT----AA-GTACTGAAACCAGGGCAAATAATTGTCA----------------------AGT---------AGATGTATCCCGGAACATTTAT-AAGA-----ATACCGATGGAA---A--ATGATATAGAAGAGGTTAC---------AAAC--CGGTGATT-TTGTATGTGTAC---AAC-AAAACACATAAGACAGCTTAATAATTTAGTTT------------TTCA---AAAAT-TTAAA-CTG----TAA--AAATAATA----TTTTAT--A-GTT---CAGTCTCCAAGATG------ATAGA---TATG---TTATATTTGTTTCAAAAACAGTCTGAAAAA---G-TTTAATTTCCAAGTACAA-T-GATATA------TTTCA---AAGACACTT------TT------ATGCT---C----------T-ACATATACAACCC-AAT-ACCC-------AAGTTTAC--CTTACT-----ATATA-GA-TTAAAAGAATC-TCC-------AAAA-TGATCTAA-ATGTGTATACTTT--------AT------AAAAA-ATCT----GTTTTTTAAATC-GAAT-TATAT--AT-T-TTTAAA
gi|10 : TGAACATTATAAA-A-ATCAAAGTACTTC----AA-GTACTGAAACCCGGGCAAGCAATTGTAAAGT-AGATATATAATAATAA--AGTTTCGG--TCAGATGTAGCCCAGAA----TAT-TATATA
gi|13 : gaagaagttgttgagatatatgtTCTTAATATATAAAAAAAAATACTCTAA-GTAATGAAACTTGGGCAACCGATGGTCAAGT-AGAAATGAAATAATAAAGTTTGT--G--TCGGATGTAGCCCGACACAagtatcctgatggaaaatgatatagc
gi|5 : tagtaAA-A-ATAAAAATCT-TA----AA-ATACTGACCCCTGGGCAAACAAAGGTCAAGT-AGAAATGAAATAATAA--AGTTT--GCTTGAGATGTTGCTTGGAAC-GTTTT-TATAAA--CATAC---TGATCGAAA--GTGATATAGCAAAGGTTACAATTTA--CAAAC--CGTTGCTTGTTGTATGTGTAC---AAT-AAAATACATAATACAGGATAATATTTTATTTCA-----------GT---TTAGAATGTTTAG-CTG----TAA--AAATAATA----TTTCAT--A-GTT---CAGTCTCCATGATG------ATAGG---T------TTTTATAT-TT----------------------GTTTCAATCTCCAAGTAAAACT-GT-------ATACTTCAAAGAAGAAAGTGGGACAATCCCCCAAAT--------------GCGCTACATATAAAAAAC-AAT-ACCC-------AAGTTTACATATTGCT-----TTTT--TT-TTAAGAAAA---taataaacagtacaaa
gi|12 : gaagcagacgctagatatgcttgaattgtatca-A-ATCAAAGTACTTA----AATATACTGAAACCTAGGCAAACAATTGTCAAAT-AGTTATGAAATAATAAAGTTTCT--G--CCAGATGTat
gi|4 : tatatgtgctttctactattgagaatgaccttcagtccttttattatt-ATCAAAGTTCCTG----AA-GTACTGAAAATTAGGCAAAAAATGGTCAATA-AGAAATGAAAAAAAAA--------------------A---CGGAACA-TTATATAAACATCC-TGT---TGGAA---A--GT-GTATGGTAGAGGTTGTTGCTTA--CAAACTGCGTTGTTTGATGTATGTGAAC---AAT-AAAATACATTAGCCAGGATAATATTTTA-TTTG-----------T----TTAGAATGTTAAG-CTG----C-C--AA--AATAC--ATTTCAT-----------GGTTT-TAAGATG------ATAGATAGT------TTATATTT-GTTCCAA---------AGAAACTGG-TTCAATCTCCAAGTAAAA-T-G------GGATGTTTCA---AAGGCAGCTAAACAATCTCCCAGATACT---C----------T-ACATATACAAATC-A---ATTCTC-----AGGTGTAC--AGAACTATAAAGTTTATTT-TTAAAAATT---TCC-------AAAA-TGATGTCA-ATGTGTATA-TTCGGAACGAAAT------AGTAGTGTCC----T-----CAAATT-AAAT-TACAT--AT-TTTTTAAAAA
gi|3 : TCAAAGTCCTTT----AA-GTACTGAAACCTGGGTAAACAC--GTGAACT-AAAAACG---------T---TTT--G--TCAGATGTAC------------AT-TATATGAGCATAC---CGATA---AAAGTGGTTTAGTAGAGATTATTATTTATACAAA----GGTGTTTGTTGTATAGGCAA---AAT-AAAGTATATACTGCAGGATAATATTTTATGTTAACCAATTTTTCTTTA-CTAGCAAGTTTAA-CCA----T-A--AAAT-------------------TT---CAATTTCAAAGATG------ATAGACA-T------TTGCATATATTTCAAT----------GAAA---G-TTCAATCTCCAAATTAAA-T-GTTTTA------TTTCA---AAGAATGTT---CAATCTGCCTGATGAA---CTACATGTGTTT-ACATGTTAAAATC-AAT-A--TCA-----TAGTTTAC--ATGATT-----GCATA-TGTTTCAAAAGACCTTCA-------AGTA-TGATATAA-ATATGTATA-CTTGAATTGAAAATAGCATAGAAA-GTCT----C-----CAAGTT-GAA---ATAT--GT-TTTCCAAAaaaaaagtaaat
gi|15 : TA----AA-GTACTGAAACCTGGGCAAACAATCGTTAAGTAAAAAATGAAATAATAATGTTTGT--G--TCAGATGT-T---------GTCAT-TATATAAACACAC---TGATC---caaagttta
gi|19 : tCTGAAACCTGGGCAAACAATGGTCTAGT-AGAAATGGAATAATAAgcaagcgattt
gi|9 : AT-TATATAAGCATAC---TGATGGAAA--GTGATTTAGTAGACATTACTATTTA--CAAAC--CATTGTTTGTTGTTTAGATAC---AGC-AAAATAC-------------ATACTTTAATTTA-----------TTTGTTTAGAATATTTAA-CTG----T-A--AAATGATA----TTTCAT--A-GTT---CAGTCTCCAAGATGGTAGATAT------T------TTATATATGTTTC-AT---------AGAAA---G-Taaa
gi|17 : aaccagaaatagccaataacATTTAATAGAAATTACAATTTA--CAAAC--TG----TTGTTGCATGGGTAC---AACAAAAACACATAAGACAGGATAA
gi|6 : ATTATTTA--CAAAC--GGATGTTAATTGCATGGATACTACAAC-AAGATACACCAGAAAGGATAATATTTTATTCTA-----------TGTGGTTAGAATGTTCAA-CTG----T-ATAAAATAATACTAGTTCGAG--G--TT---CAGTCTCTAAGATG------AT------TAATATTTTATATATATATC-AA---------ATAAA---T-TTCAATCTCCAAATGAAA-T-GTTATA------TTTGG---AAGATAGCTGATCAATGTCCCGGATGATTTACGTCATAGGTAT-GTGTAT-AAAATC-AAT-ACCTT-------AGTTTAC--ATTACT-----GTTTATTA-TTCAAAAAATCTTAA-------AAAG-G-ATCTAA-ATGTGTATA-TTTTAAAAGAAAA------CAATG-ATTT----------TAA-TT-GAAT-TATCT--AT-TTTCTAAAAA
gi|16 : AC---AAC-AAAA-ACATCAGACAGGATAATATTTTATATTA-----------TTTA-TTTAGACTTTCAAGTTG----TGA--AAATA--AT--GTTTC-----CCTTGCCCAGTCTCCaagt
gi|14 : TAATATTTAATTTTA-----------TTTGTTTGGAATGTTTAG-CTGTAAAT-A--AAATAA-AT--ATTTCATAAAC------CAGTCTCCAAGATA------A---------------TAGATAG-TTTAAA
gi|8 : taaatatattaaaattTTTCCAAAGTG------ATATATA-T------TTGTATAT-ATTTAAA---------A-AAA---G-TTTAATCTCCAGGTTAAA-T-GCTATA------TTTCA---AAGATAGTT---CAATCTACAATAGGAT---TTATATAG--GC-AGACACAAAAATTCAATCATTTAATCTCCAAGTTTAC--Atttgtttca
gi|7 : aTCCAAGATG------AT---------------AGATAT-TTT--AA---------AGGAA---G-GTCGAACTCCAAGTTAAA-TTGTTA-------ATTTAA---AAAACAGTTGAACAATCTCCTGGAT--------------GCGCTACATAT-AGAATC-A---ATCTCC-----ACGTTTAC--GTAACT-----ATTTA-TA-TTTAAAAAA---CAACATCTCCAAAATT-ATCTAA-ATGTGTTTA-TTTA-----AAAA------AATAG-TTCTTTCCT-----TAAATTGAAATATATATATATATATTTAAAAAagatacaaaatattcaagattatctcatgaaaacaaatctttaaaaacgcttaaagtactcaagttcagttgaaaaatcattttca
gi|11 : ataaattatgtctatgAAA---------AGTAA-------TAATCTCTTGGTTAAA-T-GCTAT------GTTTCA---AAGATAGTT---C-ATCTCCAAGATGGT---CTATATA------ACAT-------TC-A---ATCTCC-----AAGTTTAC--ATTTCT-----GTATA-TA-TTTAAA--------A-------AAAA-T-ATCCAAGATGagtcaat
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|18 ): AATGAAGTATACACAAAATTAGTAACTTTAACCAGACACTATCAATAAGTCACTGCTTTCA
Alignments
lowQualScore : 1111111 1 666666666666666666666666666 333333333333 111111111111111 555 222222222222 11111111 111111 2222 3333333333 2 1 1111111111 3333333 33333 999999999999999999999 222222222222 11111 4444444444 22222222 22222222222222 111111 11111
lowQualScore : 2 0000000 3 888888888888888888888888888 4 3 1 4 1 4 1 2 4 555555555555 222222222222222 33 999 1 3 66 66 5 777 4 333333333333 0 00000000 2 0 4 66 8 000000 6666 4 4 1111111111 0 0 7777777777 88888 1 4 4 5 5555555 777 0 4 33333 77 222222222222222222222 4 66 888888888888 00 22222 5 1 5 5 1 6666666666 4 0 6 66666666 33333333333333 555555 3 6 66666
lowQualScore : . ....... . ........................... . . . . . . . . . ............ ............... .. ... . . .. .. . ... . ............ . ........ . . . .. . ...... .... . . .......... . . .......... ..... . . . . ....... ... . . ..... .. ..................... . .. ............ .. ..... . . . . . .......... . . . ........ .............. ...... . . .....
lowQualScore : 5 0000000 3 111111111111111111111111111 5 4 0 4 0 0 1 4 0 222222222222 888888888888888 22 444 0 6 99 99 9 888 4 111111111111 8 33333333 9 1 4 11 9 333333 6666 4 4 9999999999 0 9 6666666666 55555 0 4 4 3 2222222 888 9 4 44444 33 777777777777777777777 4 44 888888888888 66 55555 0 0 0 0 0 0000000000 7 7 7 55555555 22222222222222 888888 5 7 77777
consensus : TTAAATNTCATTATACGTNATTTCTA-TATTG-GAA--------AGT--TTA--TGAA-ATTATTAAAATCAAAGTACTTNAA-GTACTGAAACCTGGGCAAACAATNGTCAAGT-AGAAATGAAATAAT-AA-G-TTT-T-G--TCAGATGTAGCCCGGAACG-TTATTATATAAGCATACTGATGGAAAGTGATNTAGTAGAGGTTACTATT--TACAAAC--CGTTGTTTGTTGTATGGGTAC---AAC-AAAATACATAAGACAGGATAATATTTTA-----------TTTTAT-TTG-TT-AGAATGTTTAA-CTG--T-AAA----A-TAATA---GTTT-CATA-GTTCAGTCTCCAAGATGATAG--ATA-T---TTATATATGTTTCAAAAG---------AAA---G-TTCAATCTCCAAGTNAAA-T-GTTATA-----GTTTCA---AAGACAGT-T-G-A-CAATCTCCCGGATGATC----T-CAT--G-G--C-ACATATA-AAAA-TCAAT------ACCTCCAAGTTTACATTACT-----G-TTTA-TA-TTTAAAAAA---C------TCCAAAATGATCTAAATGTGTATA-TTT-GAA-A-GAAAA------AAA-AG-NTCT----TTAAATTGAATTATAT-AT-----TTTCTAAAAA
Reference ( family-120 ) : TTAAATGTCATTATACGTCATTTCTA-TATTG-GAA--------AGT--TTA--TGAACATTNTTAAAATCAAAGTACTTNAA-GTACTGAAACCTGGGCAAACAATNGTCAAGT-AGAAATGAAATAAT-AA-GNNTT-T-G--TCAGATGTANCCCGGAACA-TTATTATATAAGCATACTGAT---AAGTGATNTAGTAGAGGTTACTATT--TACAAAC--CGNTGTTTGTTGTATGGGTAC---AAC-AAAATACATAAGACAGGATAATATTTTA-----------TTTTAT-TTG-TT-AGAATGTTTAA-CTG--T-AAA----A-TAATAC--GTTT-CATA-GTTCAGTCTCCAAGATGATAG--A---T---TTATATAT-TTTCAAAAG---------AAA---G-TTCAATCTCCAAGTNAAA-T-GTTATA-----GTTTCA---AAGACAGT-T-G-A-CAATCTCCCGGATGATC----T-CATA-GCG--C-ACATATA-AAAA-TCAAT------ACCTCCAAGTTTACATTACT-----G-TNTA-TA-TTNAAAAAA---C------TCAAAAATGATCTAAATGTGTATA-TTT-GAA-A-GAAAA------AAA-AG-GTCT----TTAAATTGAATTATAT-AT-----TTTTTAAAAA
gi|1 : TTAAATCTCATT------TATTTTTC-TATTG--AA--------GGT--TTAGGTGAA-ATTCTTAAAATCAAAGTAGATAAA-GTACTGAAACCTGCTCAAACAATGGTCAAGT-AGAAATGAAATAAT-AATGAGTG-T-G--TCAGATGTATCCCGGAACAGTTATTATATATTCATACTGGT---CAGTTATATAGTAGAGGTTACTATT--TACAAAC--CGTTGTTTGTTGTATGGGTAC---AAC-AAAATACATAAGACAGGATGATATTTTA-----------TTTTAT-TTG-TT-AAAATGTTTAA-CTG--T-AAA----A-TAATAT--GTTT-TATACTTTCAGTTTCCAACATGAT--------T---TTATATAT-TTTCAAAAG---------AAA---G-TTCAATCTCCAAGTAAAA-T-GTTATAATCATGTTTCA---AAGACAGT-T-GAA-CAATCTCCAAGATGATCA---A-CATAGGTG--C-ACATATA-AAAA-TTAAT------ATTTTAAAGATTACATTCCT-----G-TTTA-TA-TTAAAAAAA----------TGAAAAAT-ACCTAAATGTGCATA-TTTAAAA-A-GAAAA------AAA-AG-ATCT----GTAAGTTAAATTATATAAT-----TATCTAAAAA
gi|10 : --TGAACATTATAAAAATCAAAGTACTTCAA-GTACTGAAACCCGGGCAAGCAATTGTAAAGT-AGATATATAATAAT-AA-AGTTT-CGG--TCAGATGTAGCCCAGAA----TATTATATAAGTATCCTGATGGAAAATGATATAGtc
gi|11 : gaagaagttgttgagatatatgtAAAAG---------TAA-------TAATCTCTTGGTTAAA-T-GCTAT------GTTTCA---AAGATAGT-T-----CA-TCTCCAAGATGGTC----T---------------ATATA-ACAT-TCAAT--------CTCCAAGTTTACATTTCT-----G-TATA-TA-TTTAAAAAAAATA------TCCAAGATGATCTAc
gi|12 : taTATATGTGCTTTCTACTATTGAGAATGACCTTCAGTCCTTT--T----ATTATTAA--TCAAAGTACTTAAATATACTGAAACCTAGGCAAACAATTGTCAAAT-AGTTATGAAATAATAAA-GTTTC-T-G--CCAGATGT
gi|13 : AAAA--AAAATACTCTAA-GTAATGAAACTTGGGCAACCGATGGTCAAGT-AGAAATGAAATAAT-AA-AGTTTGT-G--TCGGATGTAGCCCGACACA-TAAT
gi|14 : tagtatcttaatatataTAATATTTAA-----------TTTTAT-TTG-TTTGGAATGTTTAG-CTG--T-AAATAAAA-TAA-AT--ATTT-CATA-AACCAGTCTCCAAGATAATAG--ATAGT---TTAAATTTGTTTCAaaacagtacaaa
gi|15 : taaatatattaaaattTTAAA-GTACTGAAACCTGGGCAAACAATCGTTAAGTAAAAAATGAAATAAT-AATGTTTG-T-G--TCAGATGT---------TG-TCATTATATAAACACACTGATCGCAAGCGATTT
gi|16 : AC---AAC-AAAA-ACATCAGACAGGATAATATTTTA-----------TATTAT-TTATTT-AGACT-TTCAAGTTG--TGAAA----A-TAAT----GTTTCCCTT-GCCCAGTCTCC
gi|17 : ATTTAATAGAAATTACAATT--TACAAAC--TG----TTGTTGCATGGGTAC---AACAAAAACACATAAGACAGGATAA
gi|19 : CTGAAACCTGGGCAAACAATGGTCTAGT-AGAAATGGAATAAT-AA-
gi|2 : TTAAATGTCATTATACGTCATTTCTA-TATTG-GAA--------AGT--TTA--T--------TTATAATCAAAGTACTTTAA-GTACTGAAACCAGGGCAAATAATTGTCAAGT-AGA-------------------------------TGTATCCCGGAACA-TT----TATAAGAATACCGATGGAAAATGATATAGAAGAGGTTAC---------AAAC--CGGTGATT-TTGTATGTGTAC---AAC-AAAACACATAAGACAGCTTAATAATTTA-----------GTTT-T-TCA----AAAAT-TTAAA-CTG--T-AAA----AATAATA----TTT-TATA-GTTCAGTCTCCAAGATGATAG--A---TATGTTATATTTGTTTCAAAAACAGTCTGAAAAA---G-TTTAATTTCCAAGTACAA-T-GATATA------TTTCA---AAGACACT-T----------TT----ATGCTC----T-------------ACATATA-CAAC-CCAAT------ACC--CAAGTTTACCTTACT-----A-TATA-GA-TTAAAAGAAT--C------TCCAAAATGATCTAAATGTGTATA-CTT-TAT-A--AAAA------ATC-TG-TTTT----TTAAATCGAATTATAT-A------TTTTTAAAaaa
gi|3 : TCAAAGTCCTTTAA-GTACTGAAACCTGGGTAAACA--CGTGAACT-AAAAACG-------------TTT-T-G--TCAGATGTAC------------ATTATATGAGCATACCGATAA-AAGTGGTTTAGTAGAGATTATTATTTATACAAA----GGTGTTTGTTGTATAGGCAA---AAT-AAAGTATATACTGCAGGATAATATTTTATGTTAACCAATTTTTCT-TTA-CT-AGCAAGTTTAA-CCA--T-AAA----A-T------------------TTCAATTTCAAAGATGATAGACA---T---TTGCATATATTTC-AATG---------AAA---G-TTCAATCTCCAAATTAAA-T-GTTTTA------TTTCA---AAGAATGT-T-----CAATCTGCCTGATGAAC----TACAT--GTGTTT-ACATGTT-AAAA-TCAAT------A--TCATAGTTTACATGATT-----G-CATA-TGTTTCAAAAGA---CCT----TCAAGTATGATATAAATATGTATA-CTT-GAATT-GAAAATAGCATAGA-AA-GTCT----CCAAGTTGAA--ATAT-GT-----TTTCCAAA
gi|4 : ATCAAAGTTCCTGAA-GTACTGAAAATTAGGCAAAAAATGGTCAATA-AGAAATGAAAAAAA-AA-A----------------------CGGAACA-TTAT---ATAAACATCCTGTTGGAAAGTG-TATGGTAGAGGTTGTTGCT--TACAAACTGCGTTGTTTGATGTATGTGAAC---AAT-AAAATACATTAGCCAGGATAATATTTTA------------TTTGT-----TT-AGAATGTTAAG-CTG--C-CAA-------AATAC--ATTT-CATG-GT------TTTAAGATGATAG--ATAGT---TTATATTT-GTTCCAAAG---------AAACTGG-TTCAATCTCCAAGTAAAA-T-GGGAT------GTTTCA---AAGGCAGC-TAA-A-CAATCTCCCAGATACTC----T-------------ACATATA-CAAA-TCAAT-------TCT-CAGGTGTACAGAACTATAAAG-TTTA-TT-TTTAAAAAT---T------TCCAAAATGATGTCAATGTGTATA-TTC-GGA-ACGAAAT------AGT-AGTGTCC----TCAAATTAAATTACAT-AT-----TTTTTAAAAAcaaagttta
gi|5 : AAAATAAAAAT-CTTAAA-ATACTGACCCCTGGGCAAACAAAGGTCAAGT-AGAAATGAAATAAT-AA--AGTT-T-GCTTGAGATGTTGCTTGGAACG-TT-TT-TATAAACATACTGATCGAAAGTGATATAGCAAAGGTTACAATT--TACAAAC--CGTTGCTTGTTGTATGTGTAC---AAT-AAAATACATAATACAGGATAATATTTTA-----------TTTCAG-T---TT-AGAATGTTTAG-CTG--TAAAA----A-TAATA----TTT-CATA-GTTCAGTCTCCATGATGATAG--G---T---TTTTATAT-TT----------------------GTTTCAATCTCCAAGTAAAACT-G-TATA------CTTCAAAGAAGAAAGTGG-G-A-CAATCCCCCAAAT---------------GCG--CTACATATA-AAAA-ACAAT------AC--CCAAGTTTACA-TATT-----GCTTTT-TT-TTTAAGAAA---aaaaaagtaaat
gi|6 : gaagcagacgctagatatgcttgaattgtatcaATTATT--TACAAAC--GGATGTTAATTGCATGGATACTACAAC-AAGATACACCAGAAAGGATAATATTTTA-----------TTCTATGTGG-TT-AGAATGTTCAA-CTGTAT-AAA----A-TAATACTAGTTC-GA-G-GTTCAGTCTCTAAGATGATTA--ATATT---TTATATATATATC-AAAT---------AAA---T-TTCAATCTCCAAATGAAA-T-GTTATA------TTTGG---AAGATAGC-T-G-ATCAATGTCCCGGATGATTTACGT-CATA-G-G--T-ATGTGTATAAAA-TCAAT------ACCTT--AGTTTACATTACT-----G-TTTATTA-TTCAAAAAAT--C------TTAAAAAGGATCTAAATGTGTATATTTT-AAA-A-GAAAA------CAA-TG-ATTT----T--AATTGAATTATCT-AT-----TTTCTAAAAAaat
gi|7 : TCCAAGATGATAG--A---T---------AT-TTT--AAAG---------GAA---G-GTCGAACTCCAAGTTAAA-TTGTTA-------ATTTAA---AAAACAGT-T-G-AACAATCTCCTGGATG---------------CG--CTACATATA-GAA--TCAAT--------CTCCACGTTTACGTAACT-----A-TTTA-TA-TTTAAAAAA---CAACATCTCCAAAATTATCTAAATGTGTTTA-TTT--------AAAA------AAATAG-TTCTTTCCTTAAATTGAAATATAT-ATATATATATTTAAAAAaagt
gi|8 : ataaattatgtctatgTTTCCAAAGTGATAT--A---TAT-TTGTATAT-ATTTAAAA----------AAA---G-TTTAATCTCCAGGTTAAA-T-GCTATA------TTTCA---AAGATAGT-T-----CAATCTACAATAGGATT----TATATA-G-G--C-AGACACA-AAAATTCAATCATTTAATCTCCAAGTTTACAagtcaat
gi|9 : aCAGAAATAGCC---AATA-ACATTATATAAGCATACTGATGGAAAGTGATTTAGTAGACATTACTATT--TACAAAC--CATTGTTTGTTGTTTAGATAC---AGC-AAAATACATA-------------CTTTA-----------ATTTAT-TTG-TTTAGAATATTTAA-CTG--T-AAA----A-TGATA----TTT-CATA-GTTCAGTCTCCAAGATGGTAG--ATATT---TTATATATGTTTC-ATAG---------AAA---G-Tagatacaaaatattcaagattatctcatgaaaacaaatctttaaaaacgcttaaagtactcaagttcagttgaaaaatcattttca
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): AATGAAGTATACACAAAATTAGTAACTTTAACCAGACACTATCAATAAGTCACTGCTTTCA
Alignments
lowQualScore : 1 555555555555555555555555555 1 33333333333333333 222222222222222 222222222222 111 111111 33 1 111111111111111 3333333 33333 888888888888888888 222222222222 11111 3333333333 22222222 22222222222222 111111 11111
lowQualScore : 1 9999 1 3 888888888888888888888888888 8 1 3 1 4 1 4 1 00000000000000000 222222222222222 0 8 1 3 66 66 6 777 4 333333333333 0 555 4 2 0 4 555555 66 4 88 00 66 4 2 4 4 3 2 0 777777777777777 777 1 4 4 5 5555555 777 0 4 33333 77 3 999999999999999999 4 66 888888888888 00 22222 5 0 5 5 9999999999 5 0 6 66666666 00000000000000 555555 3 6 66666 3
lowQualScore : . .... . . ........................... . . . . . . . . ................. ............... . . . . .. .. . ... . ............ . ... . . . . ...... .. . .. .. .. . . . . . . . ............... ... . . . . ....... ... . . ..... .. . .................. . .. ............ .. ..... . . . . .......... . . . ........ .............. ...... . . ..... .
lowQualScore : 0 0000 0 3 777777777777777777777777777 0 2 4 0 4 0 0 1 99999999999999999 777777777777777 1 8 0 6 99 99 4 888 4 111111111111 8 000 4 9 1 4 444444 11 4 00 66 11 4 0 0 0 8 3 9 999999999999999 000 0 4 4 3 2222222 888 9 4 44444 33 3 111111111111111111 4 44 888888888888 66 55555 0 8 0 0 6666666666 7 7 7 55555555 55555555555555 888888 5 7 77777 7
consensus : TTAAATNTCATTATACGTNATTTCTA-TATTG-GAA--------AGT--TTA--TGAA-AT-TATNAAAATCAAAGTACTTNAA-GTACTGAAACCTGGGCAAACAATNGTCAAGT-AGAAATGAAATAAT-A---A-GTTT-T-G--TCAGATGTAGCCCGGAAC-GTTATTATATAAGCATACTGATGGAAAGTGATNTAGTAGAGGTTACTATT--TACAAAC--CGTTGTTTGTTGTATGGGTAC---AAC-AAAATACATAAGACAGGATAATATTTTA-----------TTTTATTTG-TT-AGAATGTTTAA-CTG----T-A--AAA-T-AATA--T--TTCATA-GTTCAGTCTCCAAGATGATAGATA-T-TT-ATATNTGTTTCAAAAG---------AAA---GTTCAATCTCCAAGTNAAA-T-GTTATA-----GTTTCA---AAGACAGT-T-G-A-CAATCTCCCGGATGNTC----T-CAT-G---G---ACATATA-AAAA-TCAAT------ACCTCCAAGTTTACATTACT-----G-TTTA-TATTT-AAAAAA---C------TCCAAA-ATGATCTAAATGTGTATA-TTT-GAA-A-GAAAA------AAA-AG-NTCT----TTAAATTGAATTATAT-AT-----TTTCTAAAAA
Reference ( family-120 ) : TTAAATNTCATTATACGTNATTTCTA-TATTG-GAA--------AGT--TTA--TGAA-AT-TATTAAAATCAAAGTACTTNAA-GTACTGAAACCTGGGCAAACAATNGTCAAGT-AGAAATGAAATAAT-A---A-GTTT-T-G--TCAGATGTAGCCCGGAAC-GTTATTATATAAGCATACTGATGGAAAGTGATNTAGTAGAGGTTACTATT--TACAAAC--CGTTGTTTGTTGTATGGGTAC---AAC-AAAATACATAAGACAGGATAATATTTTA-----------TTTTATTTG-TT-AGAATGTTTAA-CTG----T-A--AAA-T-AATA-GT--TTCATA-GTTCAGTCTCCAAGATGATAGATA-T-TT-ATATATGTTTCAAAAG---------AAA---GTTCAATCTCCAAGTNAAA-T-GTTATA-----GTTTCA---AAGACAGT-T-G-A-CAATCTCCCGGATGATC----T-CAT-G---G--CACATATA-AAAA-TCAAT------ACCTCCAAGTTTACATTACT-----G-TTTA-TATTT-AAAAAA---C------TCCAAA-ATGATCTAAATGTGTATA-TTT-GAA-A-GAAAA------AAA-AG-NTCT----TTAAATTGAATTATAT-AT-----TTTCTAAAAA
gi|1 : TTAAATCTCATT------TATTTTTC-TATTG--AA--------GGT--TTAGGTGAA-AT-TCTTAAAATCAAAGTAGATAAA-GTACTGAAACCTGCTCAAACAATGGTCAAGT-AGAAATGAAATAAT-AATGA-G-TG-T-G--TCAGATGTATCCCGGAACAGTTATTATATATTCATACTGGT---CAGTTATATAGTAGAGGTTACTATT--TACAAAC--CGTTGTTTGTTGTATGGGTAC---AAC-AAAATACATAAGACAGGATGATATTTTA-----------TTTTATTTG-TT-AAAATGTTTAA-CTG----T-A--AAA-T-AATATGT--TTTATACTTTCAGTTTCCAACATGAT------T-TT-ATATAT-TTTCAAAAG---------AAA---GTTCAATCTCCAAGTAAAA-T-GTTATAATCATGTTTCA---AAGACAGT-T-GAA-CAATCTCCAAGATGATCA---A-CAT-AGGTG--CACATATA-AAAA-TTAAT------ATTTTAAAGATTACATTCCT-----G-TTTA-TA-TT-AAAAAA---A------TGAAAA-AT-ACCTAAATGTGCATA-TTTAAAA-A-GAAAA------AAA-AG-ATCT----GTAAGTTAAATTATATAAT-----TATCTAAAAA
gi|10 : --TGAACAT-TATAAAAATCAAAGTACTTCAA-GTACTGAAACCCGGGCAAGCAATTGTAAAGT-AGATATATAATAATAA---A-GTTT-CGG--TCAGATGTAGCCCAGAA----TATTATATAAGTATCCTGATGGAAAATGATATAGtc
gi|11 : gaagaagttgttgagatatatgtAAAAG---------TAA------TAATCTCTTGGTTAAA-T-GCTAT------GTTTCA---AAGATAGT-T-----CA-TCTCCAAGATGGTC----T---------------ATATA-ACAT-TCAAT--------CTCCAAGTTTACATTTCT-----G-TATA-TATTT-AAAAAAAATA------TCCAAG-ATGATCTAc
gi|12 : taTATATGTGCTTTCTACTATTGAGAATGACCTTCAGTCCTTT--T----AT-TATTAA--TCAAAGTACTTAAATATACTGAAACCTAGGCAAACAATTGTCAAAT-AGTTATGAAATAATAA---A-GTTTCT-G--CCAGATGT
gi|13 : A-ATATATAAAAA--AAAATACTCTAA-GTAATGAAACTTGGGCAACCGATGGTCAAGT-AGAAATGAAATAATAA---A-GTTTGT-G--TCGGATGTAGCCCGACAC-ATAAT
gi|14 : tagtatcttTAATATTTAA-----------TTTTATTTGTTT-GGAATGTTTAG-CTGTAAAT-A--AAA-TAAATA--T--TTCATA-AACCAGTCTCCAAGATAATAGATAGT-TT-AAATTTGTTTCAaaacagtacaaa
gi|15 : taaatatattaaaattTTAAA-GTACTGAAACCTGGGCAAACAATCGTTAAGTAAAAAATGAAATAAT-A---ATGTTTGT-G--TCAGATGT---------T-GTCATTATATAAACACACTGATCGCAAGCGATTT
gi|16 : AC---AAC-AAAA-ACATCAGACAGGATAATATTTTA-----------TATTATTTATTT-AGACT-TTCAAGTTG----TGA--AAA-T-AATG-TT--TCCCTT-GCCCAGTCTCC
gi|17 : ATTTAATAGAAATTACAATT--TACAAAC--TG----TTGTTGCATGGGTAC---AACAAAAACACATAAGACAGGATAA
gi|19 : CTGAAACCTGGGCAAACAATGGTCTAGT-AGAAATGGAATAAT-A---A-
gi|2 : TTAAATGTCATTATACGTCATTTCTA-TATTG-GAA--------AGT--TTA--T-----T-TAT---AATCAAAGTACTTTAA-GTACTGAAACCAGGGCAAATAATTGTCAAGT-AGA---------------------------------TGTATCCCGGAAC-ATT----TATAAGAATACCGATGGAAAATGATATAGAAGAGGTTAC---------AAAC--CGGTGATT-TTGTATGTGTAC---AAC-AAAACACATAAGACAGCTTAATAATTTA-----------GTTT-TTCA----AAAAT-TTAAA-CTG----T-A--AAAAT-AATA--T--TTTATA-GTTCAGTCTCCAAGATGATAGATA-TGTT-ATATTTGTTTCAAAAACAGTCTGAAAAA---GTTTAATTTCCAAGTACAA-T-GATATA------TTTCA---AAGACACT-T----------TT----ATGCTC----T-------------ACATATA-CAAC-CCAAT------ACC--CAAGTTTACCTTACT-----A-TATA-GATTA-AAAGAAT--C------TCCAAA-ATGATCTAAATGTGTATA-CTT-TAT-A--AAAA------ATC-TG-TTTT----TTAAATCGAATTATAT-AT-----TTT-TAAAaaa
gi|3 : TCAAAGTCCTTTAA-GTACTGAAACCTGGGTAAACA--CGTGAACT-AAAAAC---------------GTTT-T-G--TCAGATGTA------------CATTATATGAGCATACCGAT-AAAAGTGGTTTAGTAGAGATTATTATTTATACAAA----GGTGTTTGTTGTATAGGCAA---AAT-AAAGTATATACTGCAGGATAATATTTTATGTTAACCAATTTTTCTTTA-CT-AGCAAGTTTAA-CCA----T-A--AAA-T------------------TTCAATTTCAAAGATGATAGACA-T-TT-GCATATATTTC-AATG---------AAA---GTTCAATCTCCAAATTAAA-T-GTTTTA------TTTCA---AAGAATGT-T-----CAATCTGCCTGATGAAC----TACAT-GT--GTTTACATGTT-AAAA-TCAAT------A--TCATAGTTTACATGATT-----G-CATA-TGTTTCAAAAGAC--C------TTCAAGTATGATATAAATATGTATA-CTT-GAATT-GAAAATAGCATAGA-AA-GTCT----CCAAGTTGAA--ATAT-GT-----TTTCCAAA
gi|4 : ATCAAAGTTCCTGAA-GTACTGAAAATTAGGCAAAAAATGGTCAATA-AGAAATGAAAAAAA-A---A-A---------------------CGGAAC----ATTATATAAACATCCTGTTGGAAAGTG-TATGGTAGAGGTTGTTGCT--TACAAACTGCGTTGTTTGATGTATGTGAAC---AAT-AAAATACATTAGCCAGGATAATATTTTA------------TTTGT----TT-AGAATGTTAAG-CTGC---C-A--AAA-T--ACA--T--TTCATG-GT------TTTAAGATGATAGATAGT-TT-ATATTTGTTCC-AAAG---------AAACTGGTTCAATCTCCAAGTAAAA-T-GGGAT------GTTTCA---AAGGCAGC-TAA-A-CAATCTCCCAGATACTC----T-------------ACATATA-CAAA-TCAAT-------TCT-CAGGTGTACAGAACTATAAAG-TTTA-TTTTT-AAAAAT---T------TCCAAA-ATGATGTCAATGTGTATA-TTC-GGA-ACGAAAT------AGT-AGTGTCC----TCAAATTAAATTACAT-AT-----TTTTTAAAAAcaaagttta
gi|5 : AAAATAAAAAT-CTTAAA-ATACTGACCCCTGGGCAAACAAAGGTCAAGT-AGAAATGAAATAAT-A---A-AGTT-T-GCTTGAGATGTTGCTTGGAAC-GTT-TT-TATAAACATACTGATCGAAAGTGATATAGCAAAGGTTACAATT--TACAAAC--CGTTGCTTGTTGTATGTGTAC---AAT-AAAATACATAATACAGGATAATATTTTA-----------TTTCAGT---TT-AGAATGTTTAG-CTG----TAA--AAA-T-AATA--T--TTCATA-GTTCAGTCTCCATGATGATAGGTT-T-TT-ATATTTGT------------------------TTCAATCTCCAAGTAAAACT-G-TATA------CTTCAAAGAAGAAAGTGG-G-A-CAATCCCCCAAATGCGC----T-------------ACATATA-AAAA-ACAAT------AC--CCAAGTTTACA-TATT-----GCTTTT-TTTTT-AAGAAA---aaaaaagtaaat
gi|6 : gaagcagacgctagatatgcttgaattgtatcaATTATT--TACAAAC--GGATGTTAATTGCATGGATACTACAAC-AAGATACACCAGAAAGGATAATATTTTA-----------TTCTATGTGGTT-AGAATGTTCAA-CTG----T-ATAAAA-T-AATA-CTAGTTCGAG-GTTCAGTCTCTAAGATGATTAATA-T-TTTATATATATATCAAA-T---------AAA---TTTCAATCTCCAAATGAAA-T-GTTATA------TTTGG---AAGATAGC-T-G-ATCAATGTCCCGGATGATTTACGT-CATAG---G--TATGTGTATAAAA-TCAAT------ACCTT--AGTTTACATTACT-----G-TTTATTATTC-AAAAAAT--C------TTAAAA-AGGATCTAAATGTGTATATTTT-AAA-A-GAAAA------CAA-TG-ATTT----T--AATTGAATTATCT-AT-----TTTCTAAAAAaat
gi|7 : TCCAAGATGATAGATA-T-TT----------T--AAAG---------GAA---GGTCGAACTCCAAGTTAAA-TTGTTA-------ATTTAA---AAAACAGT-T-G-AACAATCTCCTGGATGCGC----T-------------ACATATA-GAA--TCAAT--------CTCCACGTTTACGTAACT-----A-TTTA-TATTT-AAAAAA---CAACATCTCCAAA-ATTATCTAAATGTGTTTA-TTT--------AAAA------AAATAG-TTCTTTCCTTAAATTGAAATATAT-ATATATATATTTAAAAAaagt
gi|8 : ataaattatgtctatgTTTCCAAAGTGATATATA-T-TT-GTATATATTT--AAAA---------AAA---GTTTAATCTCCAGGTTAAA-T-GCTATA------TTTCA---AAGATAGT-T-----CAATCTACAATAGGATT----TATATAG---G--CAGACACA-AAAATTCAATCATTTAATCTCCAAGTTTACAagtcaat
gi|9 : aCAGAAATAGCCAATAAC----ATTATATAAGCATACTGATGGAAAGTGATTTAGTAGACATTACTATT--TACAAAC--CATTGTTTGTTGTTTAGATAC---AGC-AAAATACATA-------------CTTTA-----------ATTTATTTG-TTTAGAATATTTAA-CTG----T-A--AAA-T-GATA--T--TTCATA-GTTCAGTCTCCAAGATGGTAGATATT-TT-ATATATGTTTC-ATAG---------AAA---GTagatacaaaatattcaagattatctcatgaaaacaaatctttaaaaacgcttaaagtactcaagttcagttgaaaaatcattttca
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): AATGAAGTATACACAAAATTAGTAACTTTAACCAGACACTATCAATAAGTCACTGCTTTCA
Alignments
lowQualScore : 1 555555555555 11 2222222222 33333333333333333 222222222222222 222222222222 111111 1 111111111111111 3333333 33333 7777777777777777 222222222222 11111 3333333333 22222222 22222222222222 111111 11111
lowQualScore : 1 9999 1 3 000000000000 88 1111111111 7 5 3 1 4 1 4 1 00000000000000000 222222222222222 0 8 1 3 66 66 6 777 4 333333333333 0 111111 2 0 4 4 8 66 9999 4 3 4 66 777 4 4 2 4 4 2 2 0 777777777777777 777 1 4 4 5 5555555 777 0 4 33333 77 1 9999999999999999 66 777 66 888888888888 00 22222 5 0 5 5 9999999999 5 0 6 66666666 00000000000000 555555 3 6 66666 3
lowQualScore : . .... . . ............ .. .......... . . . . . . . . ................. ............... . . . . .. .. . ... . ............ . ...... . . . . . .. .... . . . .. ... . . . . . . . . ............... ... . . . . ....... ... . . ..... .. . ................ .. ... .. ............ .. ..... . . . . .......... . . . ........ .............. ...... . . ..... .
lowQualScore : 0 0000 0 3 333333333333 33 9999999999 5 0 4 0 4 0 0 1 99999999999999999 777777777777777 1 8 0 6 99 99 4 888 4 111111111111 8 222222 9 1 4 4 9 11 4444 4 6 4 11 888 4 4 0 0 0 4 3 9 999999999999999 000 0 4 4 3 2222222 888 9 4 44444 33 0 7777777777777777 11 888 44 888888888888 66 55555 0 8 0 0 6666666666 7 7 7 55555555 55555555555555 888888 5 7 77777 7
consensus : TTAAATNTCATTATACGTNATTTCTA-TATTG-GAA--------AGT--TTA--TGAA-AT-TATNAAAA-TCAAAGTACTTNAA-GTACTGAAACCTGGGCAAACAATNGTCAAGT-AGAAATGAAATAAT-A---A-GTTT-T-G--TCAGATGTAGCCCGGAAC-GTTATTATATAAGCATACTGATGGAAAGTGATNTAGTAGAGGTTACTATT--TACAAAC--CGTTGTTTGTTGTATGGGTAC---AAC-AAAATACATAAGACAGGATAATATTTTA-----------TTTTATTTG-TT-AGAATGTTTAA-CTG-T-A--AA----A-TAA-TA--TT---T-CATA-GTTCAGTCTCCAAGATGATAGATA-T-TT-ATATNTGTTTCAAAAG---------AAA---GTTCAATCTCCAAGTNAAA-T-GTTATA-----GTTTCA---AAGACAGT-T-G-A-CAATCTCCCGGATGNTC----T-CAT--G----AC--ATATA---AAAA-TCAAT------ACCTCCAAGTTTACATTACT-----G-TTTA-TATTT-AAAAAA---C------TCCAAA-ATGATCTAAATGTGTATA-TTT-GAA-A-GAAAA------AAA-AG-NTCT----TTAAATTGAATTATAT-AT-----TTTCTAAAAA
Reference ( family-120 ) : TTAAATNTCATTATACGTNATTTCTA-TATTG-GAA--------AGT--TTA--TGAA-AT-TATNAAAA-TCAAAGTACTTNAA-GTACTGAAACCTGGGCAAACAATNGTCAAGT-AGAAATGAAATAAT-A---A-GTTT-T-G--TCAGATGTAGCCCGGAAC-GTTATTATATAAGCATACTGATGGAAAGTGATNTAGTAGAGGTTACTATT--TACAAAC--CGTTGTTTGTTGTATGGGTAC---AAC-AAAATACATAAGACAGGATAATATTTTA-----------TTTTATTTG-TT-AGAATGTTTAA-CTG-T-A--AA----A-TAA-TA--TT---T-CATA-GTTCAGTCTCCAAGATGATAGATA-T-TT-ATATNTGTTTCAAAAG---------AAA---GTTCAATCTCCAAGTNAAA-T-GTTATA-----GTTTCA---AAGACAGT-T-G-A-CAATCTCCCGGATGNTC----T-CATG-G----AC--ATATA---AAAA-TCAAT------ACCTCCAAGTTTACATTACT-----G-TTTA-TATTT-AAAAAA---C------TCCAAA-ATGATCTAAATGTGTATA-TTT-GAA-A-GAAAA------AAA-AG-NTCT----TTAAATTGAATTATAT-AT-----TTTCTAAAAA
gi|1 : TTAAATCTCATT------TATTTTTC-TATTG--AA--------GGT--TTAGGTGAA-AT-TCTTAAAA-TCAAAGTAGATAAA-GTACTGAAACCTGCTCAAACAATGGTCAAGT-AGAAATGAAATAAT-AATGA-G-TG-T-G--TCAGATGTATCCCGGAACAGTTATTATATATTCATACTGGT---CAGTTATATAGTAGAGGTTACTATT--TACAAAC--CGTTGTTTGTTGTATGGGTAC---AAC-AAAATACATAAGACAGGATGATATTTTA-----------TTTTATTTG-TT-AAAATGTTTAA-CTG-T-A--AA----A-TAA-TATGTT---T-TATACTTTCAGTTTCCAACATGAT------T-TT-ATATAT-TTTCAAAAG---------AAA---GTTCAATCTCCAAGTAAAA-T-GTTATAATCATGTTTCA---AAGACAGT-T-GAA-CAATCTCCAAGATGATCA---A-CATA-GGTGCAC--ATATA---AAAA-TTAAT------ATTTTAAAGATTACATTCCT-----G-TTTA-TA-TT-AAAAAA---A------TGAAAA-AT-ACCTAAATGTGCATA-TTTAAAA-A-GAAAA------AAA-AG-ATCT----GTAAGTTAAATTATATAAT-----TATCTAAAAA
gi|10 : --TGAACAT-TATAAAAA-TCAAAGTACTTCAA-GTACTGAAACCCGGGCAAGCAATTGTAAAGT-AGATATATAATAATAA---A-GTTT-CGG--TCAGATGTAGCCCAGAA----TATTATATAAGTATCCTGATGGAAAATGATATAGtc
gi|11 : gaagaagttgttgagatatatgtAAAAG---------TAA------TAATCTCTTGGTTAAA-T-GCTAT------GTTTCA---AAGATAGT-T-----CA-TCTCCAAGATGGTC----T---------------ATATA---ACAT-TCAAT--------CTCCAAGTTTACATTTCT-----G-TATA-TATTT-AAAAAAAATA------TCCAAG-ATGATCTAc
gi|12 : taTATATGTGCTTTCTACTATTGAGAATGACCTTCAGTCCTTT--T----AT-TATTAA---TCAAAGTACTTAAATATACTGAAACCTAGGCAAACAATTGTCAAAT-AGTTATGAAATAATAA---A-GTTTCT-G--CCAGATGT
gi|13 : A-ATATATAAAAA---AAAATACTCTAA-GTAATGAAACTTGGGCAACCGATGGTCAAGT-AGAAATGAAATAATAA---A-GTTTGT-G--TCGGATGTAGCCCGACAC-ATAAT
gi|14 : tagtatcttTAATATTTAA-----------TTTTATTTG-TTTGGAATGTTTAG-CTG-T-A--AATAAAA-TAAATA--TT---T-CATA-AACCAGTCTCCAAGATAATAGATAGT-TT-AAATTTGTTTCAaaacagtacaaa
gi|15 : taaatatattaaaattTTAAA-GTACTGAAACCTGGGCAAACAATCGTTAAGTAAAAAATGAAATAAT-A---ATGTTTGT-G--TCAGATGT---------T-GTCATTATATAAACACACTGATCGCAAGCGATTT
gi|16 : AC---AAC-AAAA-ACATCAGACAGGATAATATTTTA-----------TATTATTTATTT-AGACT-TTCAAGTTG-TGA--AA----A-TAA-TG--TT---TCCCTT-GCCCAGTCTCC
gi|17 : ATTTAATAGAAATTACAATT--TACAAAC--TG----TTGTTGCATGGGTAC---AACAAAAACACATAAGACAGGATAA
gi|19 : CTGAAACCTGGGCAAACAATGGTCTAGT-AGAAATGGAATAAT-A---A-
gi|2 : TTAAATGTCATTATACGTCATTTCTA-TATTG-GAA--------AGT--TTA--T-----T-TAT---AA-TCAAAGTACTTTAA-GTACTGAAACCAGGGCAAATAATTGTCAAGT-AGA---------------------------------TGTATCCCGGAAC-ATT----TATAAGAATACCGATGGAAAATGATATAGAAGAGGTTAC---------AAAC--CGGTGATT-TTGTATGTGTAC---AAC-AAAACACATAAGACAGCTTAATAATTTA-----------GTTT-TTCA----AAAAT-TTAAA-CTG-T-A--AA----AATAA-TA--TT---T-TATA-GTTCAGTCTCCAAGATGATAGATA-TGTT-ATATTTGTTTCAAAAACAGTCTGAAAAA---GTTTAATTTCCAAGTACAA-T-GATATA------TTTCA---AAGACACT-T----------TT----ATGCTC----T-----------AC--ATATA---CAAC-CCAAT------ACC--CAAGTTTACCTTACT-----A-TATA-GATTA-AAAGAAT--C------TCCAAA-ATGATCTAAATGTGTATA-CTT-TAT-A--AAAA------ATC-TG-TTTT----TTAAATCGAATTATAT-AT-----TTT-TAAAaaa
gi|3 : -TCAAAGTCCTTTAA-GTACTGAAACCTGGGTAAACA--CGTGAACT-AAAAAC---------------GTTT-T-G--TCAGATGTA------------CATTATATGAGCATACCGAT-AAAAGTGGTTTAGTAGAGATTATTATTTATACAAA----GGTGTTTGTTGTATAGGCAA---AAT-AAAGTATATACTGCAGGATAATATTTTATGTTAACCAATTTTTCTTTA-CT-AGCAAGTTTAA-CCA-T-A--AA----A-T--------------------TTCAATTTCAAAGATGATAGACA-T-TT-GCATATATTTC-AATG---------AAA---GTTCAATCTCCAAATTAAA-T-GTTTTA------TTTCA---AAGAATGT-T-----CAATCTGCCTGATGAAC----TACATGTGTTT-AC--ATGTT---AAAA-TCAAT------A--TCATAGTTTACATGATT-----G-CATA-TGTTTCAAAAGAC--C------TTCAAGTATGATATAAATATGTATA-CTT-GAATT-GAAAATAGCATAGA-AA-GTCT----CCAAGTTGAA--ATAT-GT-----TTTCCAAA
gi|4 : A-TCAAAGTTCCTGAA-GTACTGAAAATTAGGCAAAAAATGGTCAATA-AGAAATGAAAAAAA-A---A-A---------------------CGGAAC----ATTATATAAACATCCTGTTGGAAAGTG-TATGGTAGAGGTTGTTGCT--TACAAACTGCGTTGTTTGATGTATGTGAAC---AAT-AAAATACATTAGCCAGGATAATATTTTA------------TTTGT----TT-AGAATGTTAAG-CTGCC-A--AA----A-T-A-CA--TT---T-CATG-GT------TTTAAGATGATAGATAGT-TT-ATATTTGTTCC-AAAG---------AAACTGGTTCAATCTCCAAGTAAAA-T-GGGAT------GTTTCA---AAGGCAGC-TAA-A-CAATCTCCCAGATACTC----T-----------AC--ATATA---CAAA-TCAAT-------TCT-CAGGTGTACAGAACTATAAAG-TTTA-TTTTT-AAAAAT---T------TCCAAA-ATGATGTCAATGTGTATA-TTC-GGA-ACGAAAT------AGT-AGTGTCC----TCAAATTAAATTACAT-AT-----TTTTTAAAAAcaaagttta
gi|5 : --TGAA-TTGTATCAAAAATAAAAAT-CTTAAA-ATACTGACCCCTGGGCAAACAAAGGTCAAGT-AGAAATGAAATAAT-A---A-AGTT-T-GCTTGAGATGTTGCTTGGAAC-GTT-TT-TATAAACATACTGATCGAAAGTGATATAGCAAAGGTTACAATT--TACAAAC--CGTTGCTTGTTGTATGTGTAC---AAT-AAAATACATAATACAGGATAATATTTTA-----------TTTCAGT---TT-AGAATGTTTAG-CTG-TAA--AA----A-TAA-TA--TT---T-CATA-GTTCAGTCTCCATGATGATAGGTT-T-TT-ATATTTGT------------------------TTCAATCTCCAAGTAAAACT-G-TATA------CTTCAAAGAAGAAAGTGG-G-A-CAATCCCCCAAATGCGC----T-----------AC--ATATA---AAAA-ACAAT------AC--CCAAGTTTACA-TATT-----GCTTTT-TTTTT-AAGAAA---aaaaaagtaaat
gi|6 : gaagcagacgctagatatgctATTATT--TACAAAC--GGATGTTAATTGCATGGATACTACAAC-AAGATACACCAGAAAGGATAATATTTTA-----------TTCTATGTGGTT-AGAATGTTCAA-CTG-T-ATAAA----A-TAA-TA--CTAGTT-CGAG-GTTCAGTCTCTAAGATGATTAATA-T-TTTATATATATATCAAA-T---------AAA---TTTCAATCTCCAAATGAAA-T-GTTATA------TTTGG---AAGATAGC-T-G-ATCAATGTCCCGGATGATTTACGT-CATA-G----GT--ATGTGTATAAAA-TCAAT------ACCTT--AGTTTACATTACT-----G-TTTATTATTC-AAAAAAT--C------TTAAAA-AGGATCTAAATGTGTATATTTT-AAA-A-GAAAA------CAA-TG-ATTT----T--AATTGAATTATCT-AT-----TTTCTAAAAAaat
gi|7 : TCCAAGATGATAGATA-T-TT----------T--AAAG---------GAA---GGTCGAACTCCAAGTTAAA-TTGTTA-------ATTTAA---AAAACAGT-T-G-AACAATCTCCTGGATGCGC----T-----------AC--ATATA---GAA--TCAAT--------CTCCACGTTTACGTAACT-----A-TTTA-TATTT-AAAAAA---CAACATCTCCAAA-ATTATCTAAATGTGTTTA-TTT--------AAAA------AAATAG-TTCTTTCCTTAAATTGAAATATAT-ATATATATATTTAAAAAaagt
gi|8 : ataaattatgtctatgTTTCCAAAGTGATATATA-T-TT-GTATATATTT--AAAA---------AAA---GTTTAATCTCCAGGTTAAA-T-GCTATA------TTTCA---AAGATAGT-T-----CAATCTACAATAGGATT----TATATA-G----GCAGACACA---AAAATTCAATCATTTAATCTCCAAGTTTACAagtcaat
gi|9 : aCAGAAATAGCCAATAAC----ATTATATAAGCATACTGATGGAAAGTGATTTAGTAGACATTACTATT--TACAAAC--CATTGTTTGTTGTTTAGATAC---AGC-AAAATACATA-------------CTTTA-----------ATTTATTTG-TTTAGAATATTTAA-CTG-T-A--AA----A-TGA-TA--TT---T-CATA-GTTCAGTCTCCAAGATGGTAGATATT-TT-ATATATGTTTC-ATAG---------AAA---GTagatacaaaatattcaagattatctcatgaaaacaaatctttaaaaacgcttaaagtactcaagttcagttgaaaaatcattttca
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): AATGAAGTATACACAAAATTAGTAACTTTAACCAGACACTATCAATAAGTCACTGCTTTCA
Alignments
lowQualScore : 1 555555555555 11 2222222222 33333333333333333 222222222222222 222222222222 111111 1 111111111111111 3333333 33333 777777777777777 1111111 222222222222 11111 3333333333 22222222 22222222222222 111111 11111
lowQualScore : 1 9999 1 3 000000000000 88 1111111111 7 5 3 1 4 1 4 1 00000000000000000 222222222222222 0 8 1 3 66 66 6 777 4 333333333333 0 111111 2 0 4 4 8 66 9999 4 3 4 66 777 4 4 2 4 4 2 2 0 777777777777777 777 1 4 4 5 5555555 777 0 4 33333 77 1 4 999999999999999 66 4444444 4 888888888888 00 22222 5 0 5 5 9999999999 5 0 6 66666666 00000000000000 555555 3 6 66666 3
lowQualScore : . .... . . ............ .. .......... . . . . . . . . ................. ............... . . . . .. .. . ... . ............ . ...... . . . . . .. .... . . . .. ... . . . . . . . . ............... ... . . . . ....... ... . . ..... .. . . ............... .. ....... . ............ .. ..... . . . . .......... . . . ........ .............. ...... . . ..... .
lowQualScore : 0 0000 0 3 333333333333 33 9999999999 5 0 4 0 4 0 0 1 99999999999999999 777777777777777 1 8 0 6 99 99 4 888 4 111111111111 8 222222 9 1 4 4 9 11 4444 4 6 4 11 888 4 4 0 0 0 4 3 9 999999999999999 000 0 4 4 3 2222222 888 9 4 44444 33 0 4 666666666666666 11 4444444 9 888888888888 66 55555 0 8 0 0 6666666666 7 7 7 55555555 55555555555555 888888 5 7 77777 7
consensus : TTAAATNTCATTATACGTNATTTCTA-TATTG-GAA--------AGT--TTA--TGAA-AT-TATNAAAA-TCAAAGTACTTNAA-GTACTGAAACCTGGGCAAACAATNGTCAAGT-AGAAATGAAATAAT-A---A-GTTT-T-G--TCAGATGTAGCCCGGAAC-GTTATTATATAAGCATACTGATGGAAAGTGATNTAGTAGAGGTTACTATT--TACAAAC--CGTTGTTTGTTGTATGGGTAC---AAC-AAAATACATAAGACAGGATAATATTTTA-----------TTTTATTTG-TT-AGAATGTTTAA-CTG-T-A--AA----A-TAA-TA--TT---T-CATA-GTTCAGTCTCCAAGATGATAGATA-T-TT-ATATNTGTTTCAAAAG---------AAA---GTTCAATCTCCAAGTNAAA-T-GTTATA-----GTTTCA---AAGACAGT-T-G-A-CAATCTCCCGGATGNTC-T--A------G-----ACATA--TA-------AAAATCAAT------ACCTCCAAGTTTACATTACT-----G-TTTA-TATTT-AAAAAA---C------TCCAAA-ATGATCTAAATGTGTATA-TTT-GAA-A-GAAAA------AAA-AG-NTCT----TTAAATTGAATTATAT-AT-----TTTCTAAAAA
Reference ( family-120 ) : TTAAATNTCATTATACGTNATTTCTA-TATTG-GAA--------AGT--TTA--TGAA-AT-TATNAAAA-TCAAAGTACTTNAA-GTACTGAAACCTGGGCAAACAATNGTCAAGT-AGAAATGAAATAAT-A---A-GTTT-T-G--TCAGATGTAGCCCGGAAC-GTTATTATATAAGCATACTGATGGAAAGTGATNTAGTAGAGGTTACTATT--TACAAAC--CGTTGTTTGTTGTATGGGTAC---AAC-AAAATACATAAGACAGGATAATATTTTA-----------TTTTATTTG-TT-AGAATGTTTAA-CTG-T-A--AA----A-TAA-TA--TT---T-CATA-GTTCAGTCTCCAAGATGATAGATA-T-TT-ATATNTGTTTCAAAAG---------AAA---GTTCAATCTCCAAGTNAAA-T-GTTATA-----GTTTCA---AAGACAGT-T-G-A-CAATCTCCCGGATGNTC-T-CAT-----G-----ACATA--TA-------AAAATCAAT------ACCTCCAAGTTTACATTACT-----G-TTTA-TATTT-AAAAAA---C------TCCAAA-ATGATCTAAATGTGTATA-TTT-GAA-A-GAAAA------AAA-AG-NTCT----TTAAATTGAATTATAT-AT-----TTTCTAAAAA
gi|1 : TTAAATCTCATT------TATTTTTC-TATTG--AA--------GGT--TTAGGTGAA-AT-TCTTAAAA-TCAAAGTAGATAAA-GTACTGAAACCTGCTCAAACAATGGTCAAGT-AGAAATGAAATAAT-AATGA-G-TG-T-G--TCAGATGTATCCCGGAACAGTTATTATATATTCATACTGGT---CAGTTATATAGTAGAGGTTACTATT--TACAAAC--CGTTGTTTGTTGTATGGGTAC---AAC-AAAATACATAAGACAGGATGATATTTTA-----------TTTTATTTG-TT-AAAATGTTTAA-CTG-T-A--AA----A-TAA-TATGTT---T-TATACTTTCAGTTTCCAACATGAT------T-TT-ATATAT-TTTCAAAAG---------AAA---GTTCAATCTCCAAGTAAAA-T-GTTATAATCATGTTTCA---AAGACAGT-T-GAA-CAATCTCCAAGATGATCAA-CAT-----AGGTGCACATA--TA-------AAAATTAAT------ATTTTAAAGATTACATTCCT-----G-TTTA-TA-TT-AAAAAA---A------TGAAAA-AT-ACCTAAATGTGCATA-TTTAAAA-A-GAAAA------AAA-AG-ATCT----GTAAGTTAAATTATATAAT-----TATCTAAAAA
gi|10 : --TGAACAT-TATAAAAA-TCAAAGTACTTCAA-GTACTGAAACCCGGGCAAGCAATTGTAAAGT-AGATATATAATAATAA---A-GTTT-CGG--TCAGATGTAGCCCAGAA----TATTATATAAGTATCCTGATGGAAAATGATATAGtc
gi|11 : gaagaagttgttgagatatatgtAAAAG---------TAA------TAATCTCTTGGTTAAA-T-GCTAT------GTTTCA---AAGATAGT-T-----CA-TCTCCAAGATGGTC-T-----------------ATA--TA-------ACATTCAAT--------CTCCAAGTTTACATTTCT-----G-TATA-TATTT-AAAAAAAATA------TCCAAG-ATGATCTAc
gi|12 : taTATATGTGCTTTCTACTATTGAGAATGACCTTCAGTCCTTT--T----AT-TATTAA---TCAAAGTACTTAAATATACTGAAACCTAGGCAAACAATTGTCAAAT-AGTTATGAAATAATAA---A-GTTTCT-G--CCAGATGT
gi|13 : A-ATATATAAAAA---AAAATACTCTAA-GTAATGAAACTTGGGCAACCGATGGTCAAGT-AGAAATGAAATAATAA---A-GTTTGT-G--TCGGATGTAGCCCGACAC-ATAAT
gi|14 : tagtatcttTAATATTTAA-----------TTTTATTTG-TTTGGAATGTTTAG-CTG-T-A--AATAAAA-TAAATA--TT---T-CATA-AACCAGTCTCCAAGATAATAGATAGT-TT-AAATTTGTTTCAaaacagtacaaa
gi|15 : taaatatattaaaattTTAAA-GTACTGAAACCTGGGCAAACAATCGTTAAGTAAAAAATGAAATAAT-A---ATGTTTGT-G--TCAGATGT---------T-GTCATTATATAAACACACTGATCGCAAGCGATTT
gi|16 : AC---AAC-AAAA-ACATCAGACAGGATAATATTTTA-----------TATTATTTATTT-AGACT-TTCAAGTTG-TGA--AA----A-TAA-TG--TT---TCCCTT-GCCCAGTCTCC
gi|17 : ATTTAATAGAAATTACAATT--TACAAAC--TG----TTGTTGCATGGGTAC---AACAAAAACACATAAGACAGGATAA
gi|19 : CTGAAACCTGGGCAAACAATGGTCTAGT-AGAAATGGAATAAT-A---A-
gi|2 : TTAAATGTCATTATACGTCATTTCTA-TATTG-GAA--------AGT--TTA--T-----T-TAT---AA-TCAAAGTACTTTAA-GTACTGAAACCAGGGCAAATAATTGTCAAGT-AGA---------------------------------TGTATCCCGGAAC-ATT----TATAAGAATACCGATGGAAAATGATATAGAAGAGGTTAC---------AAAC--CGGTGATT-TTGTATGTGTAC---AAC-AAAACACATAAGACAGCTTAATAATTTA-----------GTTT-TTCA----AAAAT-TTAAA-CTG-T-A--AA----AATAA-TA--TT---T-TATA-GTTCAGTCTCCAAGATGATAGATA-TGTT-ATATTTGTTTCAAAAACAGTCTGAAAAA---GTTTAATTTCCAAGTACAA-T-GATATA------TTTCA---AAGACACT-T----------TT----ATGCTC-T---------------ACATA--TA-------CAACCCAAT------ACC--CAAGTTTACCTTACT-----A-TATA-GATTA-AAAGAAT--C------TCCAAA-ATGATCTAAATGTGTATA-CTT-TAT-A--AAAA------ATC-TG-TTTT----TTAAATCGAATTATAT-AT-----TTT-TAAAaaa
gi|3 : -TCAAAGTCCTTTAA-GTACTGAAACCTGGGTAAACA--CGTGAACT-AAAAAC---------------GTTT-T-G--TCAGATGTA------------CATTATATGAGCATACCGAT-AAAAGTGGTTTAGTAGAGATTATTATTTATACAAA----GGTGTTTGTTGTATAGGCAA---AAT-AAAGTATATACTGCAGGATAATATTTTATGTTAACCAATTTTTCTTTA-CT-AGCAAGTTTAA-CCA-T-A--AA----A-T--------------------TTCAATTTCAAAGATGATAGACA-T-TT-GCATATATTTC-AATG---------AAA---GTTCAATCTCCAAATTAAA-T-GTTTTA------TTTCA---AAGAATGT-T-----CAATCTGCCTGATGAAC-TACAT-----GTGTTTACATG--TT-------AAAATCAAT------A--TCATAGTTTACATGATT-----G-CATA-TGTTTCAAAAGAC--C------TTCAAGTATGATATAAATATGTATA-CTT-GAATT-GAAAATAGCATAGA-AA-GTCT----CCAAGTTGAA--ATAT-GT-----TTTCCAAA
gi|4 : A-TCAAAGTTCCTGAA-GTACTGAAAATTAGGCAAAAAATGGTCAATA-AGAAATGAAAAAAA-A---A-A---------------------CGGAAC----ATTATATAAACATCCTGTTGGAAAGTG-TATGGTAGAGGTTGTTGCT--TACAAACTGCGTTGTTTGATGTATGTGAAC---AAT-AAAATACATTAGCCAGGATAATATTTTA------------TTTGT----TT-AGAATGTTAAG-CTGCC-A--AA----A-T-A-CA--TT---T-CATG-GT------TTTAAGATGATAGATAGT-TT-ATATTTGTTCC-AAAG---------AAACTGGTTCAATCTCCAAGTAAAA-T-GGGAT------GTTTCA---AAGGCAGC-TAA-A-CAATCTCCCAGATACTC-T---------------ACATA--TA-------CAAATCAAT-------TCT-CAGGTGTACAGAACTATAAAG-TTTA-TTTTT-AAAAAT---T------TCCAAA-ATGATGTCAATGTGTATA-TTC-GGA-ACGAAAT------AGT-AGTGTCC----TCAAATTAAATTACAT-AT-----TTTTTAAAAAcaaagttta
gi|5 : --TGAA-TTGTATCAAAAATAAAAAT-CTTAAA-ATACTGACCCCTGGGCAAACAAAGGTCAAGT-AGAAATGAAATAAT-A---A-AGTT-T-GCTTGAGATGTTGCTTGGAAC-GTT-TT-TATAAACATACTGATCGAAAGTGATATAGCAAAGGTTACAATT--TACAAAC--CGTTGCTTGTTGTATGTGTAC---AAT-AAAATACATAATACAGGATAATATTTTA-----------TTTCAGT---TT-AGAATGTTTAG-CTG-TAA--AA----A-TAA-TA--TT---T-CATA-GTTCAGTCTCCATGATGATAGGTT-T-TT-ATATTTGT------------------------TTCAATCTCCAAGTAAAACT-G-TATA------CTTCAAAGAAGAAAGTGG-G-A-CAATCCCCCAAATGCGC-T---------------ACATA--TA-------AAAAACAAT------AC--CCAAGTTTACA-TATT-----GCTTTT-TTTTT-AAGAAA---aaaaaagtaaat
gi|6 : gaagcagacgctagatatgctATTATT--TACAAAC--GGATGTTAATTGCATGGATACTACAAC-AAGATACACCAGAAAGGATAATATTTTA-----------TTCTATGTGGTT-AGAATGTTCAA-CTG-T-ATAAA----A-TAA-TA--CTAGTT-CGAG-GTTCAGTCTCTAAGATGATTAATA-T-TTTATATATATATCAAA-T---------AAA---TTTCAATCTCCAAATGAAA-T-GTTATA------TTTGG---AAGATAGC-T-G-ATCAATGTCCCGGATGAT--T-TAC-----G-----TCATAGGTATGTGTATAAAATCAAT------ACCTT--AGTTTACATTACT-----G-TTTATTATTC-AAAAAAT--C------TTAAAA-AGGATCTAAATGTGTATATTTT-AAA-A-GAAAA------CAA-TG-ATTT----T--AATTGAATTATCT-AT-----TTTCTAAAAAaat
gi|7 : TCCAAGATGATAGATA-T-TT----------T--AAAG---------GAA---GGTCGAACTCCAAGTTAAA-TTGTTA-------ATTTAA---AAAACAGT-T-G-AACAATCTCCTGGATGCGC-T---------------ACATA--TA-------GAA-TCAAT--------CTCCACGTTTACGTAACT-----A-TTTA-TATTT-AAAAAA---CAACATCTCCAAA-ATTATCTAAATGTGTTTA-TTT--------AAAA------AAATAG-TTCTTTCCTTAAATTGAAATATAT-ATATATATATTTAAAAAaagt
gi|8 : ataaattatgtctatgTTTCCAAAGTGATATATA-T-TT-GTATATATTT--AAAA---------AAA---GTTTAATCTCCAGGTTAAA-T-GCTATA------TTTCA---AAGATAGT-T-----CAATCTACAATAGGATT-TATATAGGCAG-----ACACA---A-------AAATTCAATCATTTAATCTCCAAGTTTACAagtcaat
gi|9 : aCAGAAATAGCCAATAAC----ATTATATAAGCATACTGATGGAAAGTGATTTAGTAGACATTACTATT--TACAAAC--CATTGTTTGTTGTTTAGATAC---AGC-AAAATACATA-------------CTTTA-----------ATTTATTTG-TTTAGAATATTTAA-CTG-T-A--AA----A-TGA-TA--TT---T-CATA-GTTCAGTCTCCAAGATGGTAGATATT-TT-ATATATGTTTC-ATAG---------AAA---GTagatacaaaatattcaagattatctcatgaaaacaaatctttaaaaacgcttaaagtactcaagttcagttgaaaaatcattttca
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): AATGAAGTATACACAAAATTAGTAACTTTAACCAGACACTATCAATAAGTCACTGCTTTCA
Alignments
lowQualScore : 1 555555555555 11 2222222222 33333333333333333 222222222222222 222222222222 111111 1 111111111111111 3333333 33333 11111 5555555555555555 1111111 222222222222 11111 3333333333 22222222 22222222222222 111111 11111
lowQualScore : 1 9999 1 3 000000000000 88 1111111111 7 5 3 1 4 1 4 1 00000000000000000 222222222222222 0 8 1 3 66 66 6 777 4 333333333333 0 111111 2 0 4 4 8 66 9999 4 3 4 66 777 4 4 2 4 4 2 2 0 777777777777777 777 1 4 4 5 5555555 777 0 4 33333 33333 4 1 0000000000000000 66 66 4444444 66 888888888888 00 22222 5 0 5 5 9999999999 5 0 6 66666666 00000000000000 555555 3 6 66666 3
lowQualScore : . .... . . ............ .. .......... . . . . . . . . ................. ............... . . . . .. .. . ... . ............ . ...... . . . . . .. .... . . . .. ... . . . . . . . . ............... ... . . . . ....... ... . . ..... ..... . . ................ .. .. ....... .. ............ .. ..... . . . . .......... . . . ........ .............. ...... . . ..... .
lowQualScore : 0 0000 0 3 333333333333 33 9999999999 5 0 4 0 4 0 0 1 99999999999999999 777777777777777 1 8 0 6 99 99 4 888 4 111111111111 8 222222 9 1 4 4 9 11 4444 4 6 4 11 888 4 4 0 0 0 4 3 9 999999999999999 000 0 4 4 3 2222222 888 9 4 44444 33333 4 0 9999999999999999 11 11 4444444 44 888888888888 66 55555 0 8 0 0 6666666666 7 7 7 55555555 55555555555555 888888 5 7 77777 7
consensus : TTAAATNTCATTATACGTNATTTCTA-TATTG-GAA--------AGT--TTA--TGAA-AT-TATNAAAA-TCAAAGTACTTNAA-GTACTGAAACCTGGGCAAACAATNGTCAAGT-AGAAATGAAATAAT-A---A-GTTT-T-G--TCAGATGTAGCCCGGAAC-GTTATTATATAAGCATACTGATGGAAAGTGATNTAGTAGAGGTTACTATT--TACAAAC--CGTTGTTTGTTGTATGGGTAC---AAC-AAAATACATAAGACAGGATAATATTTTA-----------TTTTATTTG-TT-AGAATGTTTAA-CTG-T-A--AA----A-TAA-TA--TT---T-CATA-GTTCAGTCTCCAAGATGATAGATA-T-TT-ATATNTGTTTCAAAAG---------AAA---GTTCAATCTCCAAGTNAAA-T-GTTATA-----GTTTCA---AAGACAGT-T-G-A-CAATCTCC---CGGA-TGNTC----TA---G-----AC--ATA--TA-------AAAA-TCAAT------ACCTCCAAGTTTACATTACT-----G-TTTA-TATTT-AAAAAA---C------TCCAAA-ATGATCTAAATGTGTATA-TTT-GAA-A-GAAAA------AAA-AG-NTCT----TTAAATTGAATTATAT-AT-----TTTCTAAAAA
Reference ( family-120 ) : TTAAATNTCATTATACGTNATTTCTA-TATTG-GAA--------AGT--TTA--TGAA-AT-TATNAAAA-TCAAAGTACTTNAA-GTACTGAAACCTGGGCAAACAATNGTCAAGT-AGAAATGAAATAAT-A---A-GTTT-T-G--TCAGATGTAGCCCGGAAC-GTTATTATATAAGCATACTGATGGAAAGTGATNTAGTAGAGGTTACTATT--TACAAAC--CGTTGTTTGTTGTATGGGTAC---AAC-AAAATACATAAGACAGGATAATATTTTA-----------TTTTATTTG-TT-AGAATGTTTAA-CTG-T-A--AA----A-TAA-TA--TT---T-CATA-GTTCAGTCTCCAAGATGATAGATA-T-TT-ATATNTGTTTCAAAAG---------AAA---GTTCAATCTCCAAGTNAAA-T-GTTATA-----GTTTCA---AAGACAGT-T-G-A-CAATCTCC---CGGA-TGNTC----TA---G-----AC--ATA--TA-------AAAA-TCAAT------ACCTCCAAGTTTACATTACT-----G-TTTA-TATTT-AAAAAA---C------TCCAAA-ATGATCTAAATGTGTATA-TTT-GAA-A-GAAAA------AAA-AG-NTCT----TTAAATTGAATTATAT-AT-----TTTCTAAAAA
gi|1 : TTAAATCTCATT------TATTTTTC-TATTG--AA--------GGT--TTAGGTGAA-AT-TCTTAAAA-TCAAAGTAGATAAA-GTACTGAAACCTGCTCAAACAATGGTCAAGT-AGAAATGAAATAAT-AATGA-G-TG-T-G--TCAGATGTATCCCGGAACAGTTATTATATATTCATACTGGT---CAGTTATATAGTAGAGGTTACTATT--TACAAAC--CGTTGTTTGTTGTATGGGTAC---AAC-AAAATACATAAGACAGGATGATATTTTA-----------TTTTATTTG-TT-AAAATGTTTAA-CTG-T-A--AA----A-TAA-TATGTT---T-TATACTTTCAGTTTCCAACATGAT------T-TT-ATATAT-TTTCAAAAG---------AAA---GTTCAATCTCCAAGTAAAA-T-GTTATAATCATGTTTCA---AAGACAGT-T-GAA-CAATCTCC---AAGA-TGATCAACATA---GGTGC-AC--ATA--TA-------AAAA-TTAAT------ATTTTAAAGATTACATTCCT-----G-TTTA-TA-TT-AAAAAA---A------TGAAAA-AT-ACCTAAATGTGCATA-TTTAAAA-A-GAAAA------AAA-AG-ATCT----GTAAGTTAAATTATATAAT-----TATCTAAAAA
gi|10 : --TGAACAT-TATAAAAA-TCAAAGTACTTCAA-GTACTGAAACCCGGGCAAGCAATTGTAAAGT-AGATATATAATAATAA---A-GTTT-CGG--TCAGATGTAGCCCAGAA----TATTATATAAGTATCCTGATGGAAAATGATATAGtc
gi|11 : gaagaagttgttgagatatatgtAAAAG---------TAA------TAATCTCTTGGTTAAA-T-GCTAT------GTTTCA---AAGATAGT-T-----CA-TCTCC---AAGA-TGGTC----TA--------------TA--TA-------ACAT-TCAAT--------CTCCAAGTTTACATTTCT-----G-TATA-TATTT-AAAAAAAATA------TCCAAG-ATGATCTAc
gi|12 : taTATATGTGCTTTCTACTATTGAGAATGACCTTCAGTCCTTT--T----AT-TATTAA---TCAAAGTACTTAAATATACTGAAACCTAGGCAAACAATTGTCAAAT-AGTTATGAAATAATAA---A-GTTTCT-G--CCAGATGT
gi|13 : A-ATATATAAAAA---AAAATACTCTAA-GTAATGAAACTTGGGCAACCGATGGTCAAGT-AGAAATGAAATAATAA---A-GTTTGT-G--TCGGATGTAGCCCGACAC-ATAAT
gi|14 : tagtatcttTAATATTTAA-----------TTTTATTTG-TTTGGAATGTTTAG-CTG-T-A--AATAAAA-TAAATA--TT---T-CATA-AACCAGTCTCCAAGATAATAGATAGT-TT-AAATTTGTTTCAaaacagtacaaa
gi|15 : taaatatattaaaattTTAAA-GTACTGAAACCTGGGCAAACAATCGTTAAGTAAAAAATGAAATAAT-A---ATGTTTGT-G--TCAGATGT---------T-GTCATTATATAAACACACTGATCGCAAGCGATTT
gi|16 : AC---AAC-AAAA-ACATCAGACAGGATAATATTTTA-----------TATTATTTATTT-AGACT-TTCAAGTTG-TGA--AA----A-TAA-TG--TT---TCCCTT-GCCCAGTCTCC
gi|17 : ATTTAATAGAAATTACAATT--TACAAAC--TG----TTGTTGCATGGGTAC---AACAAAAACACATAAGACAGGATAA
gi|19 : CTGAAACCTGGGCAAACAATGGTCTAGT-AGAAATGGAATAAT-A---A-
gi|2 : TTAAATGTCATTATACGTCATTTCTA-TATTG-GAA--------AGT--TTA--T-----T-TAT---AA-TCAAAGTACTTTAA-GTACTGAAACCAGGGCAAATAATTGTCAAGT-AGA---------------------------------TGTATCCCGGAAC-ATT----TATAAGAATACCGATGGAAAATGATATAGAAGAGGTTAC---------AAAC--CGGTGATT-TTGTATGTGTAC---AAC-AAAACACATAAGACAGCTTAATAATTTA-----------GTTT-TTCA----AAAAT-TTAAA-CTG-T-A--AA----AATAA-TA--TT---T-TATA-GTTCAGTCTCCAAGATGATAGATA-TGTT-ATATTTGTTTCAAAAACAGTCTGAAAAA---GTTTAATTTCCAAGTACAA-T-GATATA------TTTCA---AAGACACT-T----------TT-------A-TGCTC----TA----------C--ATA--TA-------CAAC-CCAAT------ACC--CAAGTTTACCTTACT-----A-TATA-GATTA-AAAGAAT--C------TCCAAA-ATGATCTAAATGTGTATA-CTT-TAT-A--AAAA------ATC-TG-TTTT----TTAAATCGAATTATAT-AT-----TTT-TAAAaaa
gi|3 : -TCAAAGTCCTTTAA-GTACTGAAACCTGGGTAAACA--CGTGAACT-AAAAAC---------------GTTT-T-G--TCAGATGTA------------CATTATATGAGCATACCGAT-AAAAGTGGTTTAGTAGAGATTATTATTTATACAAA----GGTGTTTGTTGTATAGGCAA---AAT-AAAGTATATACTGCAGGATAATATTTTATGTTAACCAATTTTTCTTTA-CT-AGCAAGTTTAA-CCA-T-A--AA----A-T--------------------TTCAATTTCAAAGATGATAGACA-T-TT-GCATATATTTC-AATG---------AAA---GTTCAATCTCCAAATTAAA-T-GTTTTA------TTTCA---AAGAATGT-T-----CAATCTGC---CTGA-TGAAC----TACATGTGTTTAC--ATG--TT-------AAAA-TCAAT------A--TCATAGTTTACATGATT-----G-CATA-TGTTTCAAAAGAC--C------TTCAAGTATGATATAAATATGTATA-CTT-GAATT-GAAAATAGCATAGA-AA-GTCT----CCAAGTTGAA--ATAT-GT-----TTTCCAAA
gi|4 : A-TCAAAGTTCCTGAA-GTACTGAAAATTAGGCAAAAAATGGTCAATA-AGAAATGAAAAAAA-A---A-A---------------------CGGAAC----ATTATATAAACATCCTGTTGGAAAGTG-TATGGTAGAGGTTGTTGCT--TACAAACTGCGTTGTTTGATGTATGTGAAC---AAT-AAAATACATTAGCCAGGATAATATTTTA------------TTTGT----TT-AGAATGTTAAG-CTGCC-A--AA----A-T-A-CA--TT---T-CATG-GT------TTTAAGATGATAGATAGT-TT-ATATTTGTTCC-AAAG---------AAACTGGTTCAATCTCCAAGTAAAA-T-GGGAT------GTTTCA---AAGGCAGC-TAA-A-CAATCTCC---CAGA-TACTC----T----------AC--ATA--TA-------CAAA-TCAAT-------TCT-CAGGTGTACAGAACTATAAAG-TTTA-TTTTT-AAAAAT---T------TCCAAA-ATGATGTCAATGTGTATA-TTC-GGA-ACGAAAT------AGT-AGTGTCC----TCAAATTAAATTACAT-AT-----TTTTTAAAAAcaaagttta
gi|5 : --TGAA-TTGTATCAAAAATAAAAAT-CTTAAA-ATACTGACCCCTGGGCAAACAAAGGTCAAGT-AGAAATGAAATAAT-A---A-AGTT-T-GCTTGAGATGTTGCTTGGAAC-GTT-TT-TATAAACATACTGATCGAAAGTGATATAGCAAAGGTTACAATT--TACAAAC--CGTTGCTTGTTGTATGTGTAC---AAT-AAAATACATAATACAGGATAATATTTTA-----------TTTCAGT---TT-AGAATGTTTAG-CTG-TAA--AA----A-TAA-TA--TT---T-CATA-GTTCAGTCTCCATGATGATAGGTT-T-TT-ATATTTGT------------------------TTCAATCTCCAAGTAAAACT-G-TATA------CTTCAAAGAAGAAAGTGG-G-A-CAATCCCC---CAAA-TGCGC----T----------AC--ATA--TA-------AAAA-ACAAT------AC--CCAAGTTTACA-TATT-----GCTTTT-TTTTT-AAGAAA---aaaaaagtaaat
gi|6 : gaagcagacgctagatatgctATTATT--TACAAAC--GGATGTTAATTGCATGGATACTACAAC-AAGATACACCAGAAAGGATAATATTTTA-----------TTCTATGTGGTT-AGAATGTTCAA-CTG-T-ATAAA----A-TAA-TA--CTAGTT-CGAG-GTTCAGTCTCTAAGATGATTAATA-T-TTTATATATATATCAAA-T---------AAA---TTTCAATCTCCAAATGAAA-T-GTTATA------TTTGG---AAGATAGC-T-G-ATCAATGTCC---CGGA-TGATT----TAC--G-----TC--ATAGGTATGTGTATAAAA-TCAAT------ACCTT--AGTTTACATTACT-----G-TTTATTATTC-AAAAAAT--C------TTAAAA-AGGATCTAAATGTGTATATTTT-AAA-A-GAAAA------CAA-TG-ATTT----T--AATTGAATTATCT-AT-----TTTCTAAAAAaat
gi|7 : TCCAAGATGATAGATA-T-TT----------T--AAAG---------GAA---GGTCGAACTCCAAGTTAAA-TTGTTA-------ATTTAA---AAAACAGT-T-G-AACAATCTCC---TGGA-TGCGC----TA----------C--ATA--TA-------GAA--TCAAT--------CTCCACGTTTACGTAACT-----A-TTTA-TATTT-AAAAAA---CAACATCTCCAAA-ATTATCTAAATGTGTTTA-TTT--------AAAA------AAATAG-TTCTTTCCTTAAATTGAAATATAT-ATATATATATTTAAAAAaagt
gi|8 : ataaattatgtctatgTTTCCAAAGTGATATATA-T-TT-GTATATATTT--AAAA---------AAA---GTTTAATCTCCAGGTTAAA-T-GCTATA------TTTCA---AAGATAGT-T-----CAATCTACAATAGGATTTATA----TA---G-----GCAGACA--CA-------AAAATTCAATCATTTAATCTCCAAGTTTACAagtcaat
gi|9 : aCAGAAATAGCCAATAAC----ATTATATAAGCATACTGATGGAAAGTGATTTAGTAGACATTACTATT--TACAAAC--CATTGTTTGTTGTTTAGATAC---AGC-AAAATACATA-------------CTTTA-----------ATTTATTTG-TTTAGAATATTTAA-CTG-T-A--AA----A-TGA-TA--TT---T-CATA-GTTCAGTCTCCAAGATGGTAGATATT-TT-ATATATGTTTC-ATAG---------AAA---GTagatacaaaatattcaagattatctcatgaaaacaaatctttaaaaacgcttaaagtactcaagttcagttgaaaaatcattttca
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): AATGAAGTATACACAAAATTAGTAACTTTAACCAGACACTATCAATAAGTCACTGCTTTCA
Alignments
lowQualScore : 1 555555555555 11 2222222222 33333333333333333 222222222222222 222222222222 111111 1 111111111111111 3333333 33333 11111 5555555555555555 1111111 222222222222 11111 3333333333 22222222 22222222222222 111111 11111
lowQualScore : 1 9999 1 3 000000000000 88 1111111111 7 5 3 1 4 1 4 1 00000000000000000 222222222222222 0 8 1 3 66 66 6 777 4 333333333333 0 111111 2 0 4 4 8 66 9999 4 3 4 66 777 4 4 2 4 4 2 2 0 777777777777777 777 1 4 4 5 5555555 777 0 4 33333 33333 4 1 0000000000000000 66 66 4444444 66 888888888888 00 22222 5 0 5 5 9999999999 5 0 6 66666666 00000000000000 555555 3 6 66666 3
lowQualScore : . .... . . ............ .. .......... . . . . . . . . ................. ............... . . . . .. .. . ... . ............ . ...... . . . . . .. .... . . . .. ... . . . . . . . . ............... ... . . . . ....... ... . . ..... ..... . . ................ .. .. ....... .. ............ .. ..... . . . . .......... . . . ........ .............. ...... . . ..... .
lowQualScore : 0 0000 0 3 333333333333 33 9999999999 5 0 4 0 4 0 0 1 99999999999999999 777777777777777 1 8 0 6 99 99 4 888 4 111111111111 8 222222 9 1 4 4 9 11 4444 4 6 4 11 888 4 4 0 0 0 4 3 9 999999999999999 000 0 4 4 3 2222222 888 9 4 44444 33333 4 0 9999999999999999 11 11 4444444 44 888888888888 66 55555 0 8 0 0 6666666666 7 7 7 55555555 55555555555555 888888 5 7 77777 7
consensus : TTAAATNTCATTATACGTNATTTCTA-TATTG-GAA--------AGT--TTA--TGAA-AT-TATNAAAA-TCAAAGTACTTNAA-GTACTGAAACCTGGGCAAACAATNGTCAAGT-AGAAATGAAATAAT-A---A-GTTT-T-G--TCAGATGTAGCCCGGAAC-GTTATTATATAAGCATACTGATGGAAAGTGATNTAGTAGAGGTTACTATT--TACAAAC--CGTTGTTTGTTGTATGGGTAC---AAC-AAAATACATAAGACAGGATAATATTTTA-----------TTTTATTTG-TT-AGAATGTTTAA-CTG-T-A--AA----A-TAA-TA--TT---T-CATA-GTTCAGTCTCCAAGATGATAGATA-T-TT-ATATNTGTTTCAAAAG---------AAA---GTTCAATCTCCAAGTNAAA-T-GTTATA-----GTTTCA---AAGACAGT-T-G-A-CAATCTCC---CGGA-TGNTC----TA---G-----AC--ATA--TA-------AAAA-TCAAT------ACCTCCAAGTTTACATTACT-----G-TTTA-TATTT-AAAAAA---C------TCCAAA-ATGATCTAAATGTGTATA-TTT-GAA-A-GAAAA------AAA-AG-NTCT----TTAAATTGAATTATAT-AT-----TTTCTAAAAA
Reference ( family-120 ) : TTAAATNTCATTATACGTNATTTCTA-TATTG-GAA--------AGT--TTA--TGAA-AT-TATNAAAA-TCAAAGTACTTNAA-GTACTGAAACCTGGGCAAACAATNGTCAAGT-AGAAATGAAATAAT-A---A-GTTT-T-G--TCAGATGTAGCCCGGAAC-GTTATTATATAAGCATACTGATGGAAAGTGATNTAGTAGAGGTTACTATT--TACAAAC--CGTTGTTTGTTGTATGGGTAC---AAC-AAAATACATAAGACAGGATAATATTTTA-----------TTTTATTTG-TT-AGAATGTTTAA-CTG-T-A--AA----A-TAA-TA--TT---T-CATA-GTTCAGTCTCCAAGATGATAGATA-T-TT-ATATNTGTTTCAAAAG---------AAA---GTTCAATCTCCAAGTNAAA-T-GTTATA-----GTTTCA---AAGACAGT-T-G-A-CAATCTCC---CGGA-TGNTC----TA---G-----AC--ATA--TA-------AAAA-TCAAT------ACCTCCAAGTTTACATTACT-----G-TTTA-TATTT-AAAAAA---C------TCCAAA-ATGATCTAAATGTGTATA-TTT-GAA-A-GAAAA------AAA-AG-NTCT----TTAAATTGAATTATAT-AT-----TTTCTAAAAA
gi|1 : TTAAATCTCATT------TATTTTTC-TATTG--AA--------GGT--TTAGGTGAA-AT-TCTTAAAA-TCAAAGTAGATAAA-GTACTGAAACCTGCTCAAACAATGGTCAAGT-AGAAATGAAATAAT-AATGA-G-TG-T-G--TCAGATGTATCCCGGAACAGTTATTATATATTCATACTGGT---CAGTTATATAGTAGAGGTTACTATT--TACAAAC--CGTTGTTTGTTGTATGGGTAC---AAC-AAAATACATAAGACAGGATGATATTTTA-----------TTTTATTTG-TT-AAAATGTTTAA-CTG-T-A--AA----A-TAA-TATGTT---T-TATACTTTCAGTTTCCAACATGAT------T-TT-ATATAT-TTTCAAAAG---------AAA---GTTCAATCTCCAAGTAAAA-T-GTTATAATCATGTTTCA---AAGACAGT-T-GAA-CAATCTCC---AAGA-TGATCAACATA---GGTGC-AC--ATA--TA-------AAAA-TTAAT------ATTTTAAAGATTACATTCCT-----G-TTTA-TA-TT-AAAAAA---A------TGAAAA-AT-ACCTAAATGTGCATA-TTTAAAA-A-GAAAA------AAA-AG-ATCT----GTAAGTTAAATTATATAAT-----TATCTAAAAA
gi|10 : --TGAACAT-TATAAAAA-TCAAAGTACTTCAA-GTACTGAAACCCGGGCAAGCAATTGTAAAGT-AGATATATAATAATAA---A-GTTT-CGG--TCAGATGTAGCCCAGAA----TATTATATAAGTATCCTGATGGAAAATGATATAGtc
gi|11 : gaagaagttgttgagatatatgtAAAAG---------TAA------TAATCTCTTGGTTAAA-T-GCTAT------GTTTCA---AAGATAGT-T-----CA-TCTCC---AAGA-TGGTC----TA--------------TA--TA-------ACAT-TCAAT--------CTCCAAGTTTACATTTCT-----G-TATA-TATTT-AAAAAAAATA------TCCAAG-ATGATCTAc
gi|12 : taTATATGTGCTTTCTACTATTGAGAATGACCTTCAGTCCTTT--T----AT-TATTAA---TCAAAGTACTTAAATATACTGAAACCTAGGCAAACAATTGTCAAAT-AGTTATGAAATAATAA---A-GTTTCT-G--CCAGATGT
gi|13 : A-ATATATAAAAA---AAAATACTCTAA-GTAATGAAACTTGGGCAACCGATGGTCAAGT-AGAAATGAAATAATAA---A-GTTTGT-G--TCGGATGTAGCCCGACAC-ATAAT
gi|14 : tagtatcttTAATATTTAA-----------TTTTATTTG-TTTGGAATGTTTAG-CTG-T-A--AATAAAA-TAAATA--TT---T-CATA-AACCAGTCTCCAAGATAATAGATAGT-TT-AAATTTGTTTCAaaacagtacaaa
gi|15 : taaatatattaaaattTTAAA-GTACTGAAACCTGGGCAAACAATCGTTAAGTAAAAAATGAAATAAT-A---ATGTTTGT-G--TCAGATGT---------T-GTCATTATATAAACACACTGATCGCAAGCGATTT
gi|16 : AC---AAC-AAAA-ACATCAGACAGGATAATATTTTA-----------TATTATTTATTT-AGACT-TTCAAGTTG-TGA--AA----A-TAA-TG--TT---TCCCTT-GCCCAGTCTCC
gi|17 : ATTTAATAGAAATTACAATT--TACAAAC--TG----TTGTTGCATGGGTAC---AACAAAAACACATAAGACAGGATAA
gi|19 : CTGAAACCTGGGCAAACAATGGTCTAGT-AGAAATGGAATAAT-A---A-
gi|2 : TTAAATGTCATTATACGTCATTTCTA-TATTG-GAA--------AGT--TTA--T-----T-TAT---AA-TCAAAGTACTTTAA-GTACTGAAACCAGGGCAAATAATTGTCAAGT-AGA---------------------------------TGTATCCCGGAAC-ATT----TATAAGAATACCGATGGAAAATGATATAGAAGAGGTTAC---------AAAC--CGGTGATT-TTGTATGTGTAC---AAC-AAAACACATAAGACAGCTTAATAATTTA-----------GTTT-TTCA----AAAAT-TTAAA-CTG-T-A--AA----AATAA-TA--TT---T-TATA-GTTCAGTCTCCAAGATGATAGATA-TGTT-ATATTTGTTTCAAAAACAGTCTGAAAAA---GTTTAATTTCCAAGTACAA-T-GATATA------TTTCA---AAGACACT-T----------TT-------A-TGCTC----TA----------C--ATA--TA-------CAAC-CCAAT------ACC--CAAGTTTACCTTACT-----A-TATA-GATTA-AAAGAAT--C------TCCAAA-ATGATCTAAATGTGTATA-CTT-TAT-A--AAAA------ATC-TG-TTTT----TTAAATCGAATTATAT-AT-----TTT-TAAAaaa
gi|3 : -TCAAAGTCCTTTAA-GTACTGAAACCTGGGTAAACA--CGTGAACT-AAAAAC---------------GTTT-T-G--TCAGATGTA------------CATTATATGAGCATACCGAT-AAAAGTGGTTTAGTAGAGATTATTATTTATACAAA----GGTGTTTGTTGTATAGGCAA---AAT-AAAGTATATACTGCAGGATAATATTTTATGTTAACCAATTTTTCTTTA-CT-AGCAAGTTTAA-CCA-T-A--AA----A-T--------------------TTCAATTTCAAAGATGATAGACA-T-TT-GCATATATTTC-AATG---------AAA---GTTCAATCTCCAAATTAAA-T-GTTTTA------TTTCA---AAGAATGT-T-----CAATCTGC---CTGA-TGAAC----TACATGTGTTTAC--ATG--TT-------AAAA-TCAAT------A--TCATAGTTTACATGATT-----G-CATA-TGTTTCAAAAGAC--C------TTCAAGTATGATATAAATATGTATA-CTT-GAATT-GAAAATAGCATAGA-AA-GTCT----CCAAGTTGAA--ATAT-GT-----TTTCCAAA
gi|4 : A-TCAAAGTTCCTGAA-GTACTGAAAATTAGGCAAAAAATGGTCAATA-AGAAATGAAAAAAA-A---A-A---------------------CGGAAC----ATTATATAAACATCCTGTTGGAAAGTG-TATGGTAGAGGTTGTTGCT--TACAAACTGCGTTGTTTGATGTATGTGAAC---AAT-AAAATACATTAGCCAGGATAATATTTTA------------TTTGT----TT-AGAATGTTAAG-CTGCC-A--AA----A-T-A-CA--TT---T-CATG-GT------TTTAAGATGATAGATAGT-TT-ATATTTGTTCC-AAAG---------AAACTGGTTCAATCTCCAAGTAAAA-T-GGGAT------GTTTCA---AAGGCAGC-TAA-A-CAATCTCC---CAGA-TACTC----T----------AC--ATA--TA-------CAAA-TCAAT-------TCT-CAGGTGTACAGAACTATAAAG-TTTA-TTTTT-AAAAAT---T------TCCAAA-ATGATGTCAATGTGTATA-TTC-GGA-ACGAAAT------AGT-AGTGTCC----TCAAATTAAATTACAT-AT-----TTTTTAAAAAcaaagttta
gi|5 : --TGAA-TTGTATCAAAAATAAAAAT-CTTAAA-ATACTGACCCCTGGGCAAACAAAGGTCAAGT-AGAAATGAAATAAT-A---A-AGTT-T-GCTTGAGATGTTGCTTGGAAC-GTT-TT-TATAAACATACTGATCGAAAGTGATATAGCAAAGGTTACAATT--TACAAAC--CGTTGCTTGTTGTATGTGTAC---AAT-AAAATACATAATACAGGATAATATTTTA-----------TTTCAGT---TT-AGAATGTTTAG-CTG-TAA--AA----A-TAA-TA--TT---T-CATA-GTTCAGTCTCCATGATGATAGGTT-T-TT-ATATTTGT------------------------TTCAATCTCCAAGTAAAACT-G-TATA------CTTCAAAGAAGAAAGTGG-G-A-CAATCCCC---CAAA-TGCGC----T----------AC--ATA--TA-------AAAA-ACAAT------AC--CCAAGTTTACA-TATT-----GCTTTT-TTTTT-AAGAAA---aaaaaagtaaat
gi|6 : gaagcagacgctagatatgctATTATT--TACAAAC--GGATGTTAATTGCATGGATACTACAAC-AAGATACACCAGAAAGGATAATATTTTA-----------TTCTATGTGGTT-AGAATGTTCAA-CTG-T-ATAAA----A-TAA-TA--CTAGTT-CGAG-GTTCAGTCTCTAAGATGATTAATA-T-TTTATATATATATCAAA-T---------AAA---TTTCAATCTCCAAATGAAA-T-GTTATA------TTTGG---AAGATAGC-T-G-ATCAATGTCC---CGGA-TGATT----TAC--G-----TC--ATAGGTATGTGTATAAAA-TCAAT------ACCTT--AGTTTACATTACT-----G-TTTATTATTC-AAAAAAT--C------TTAAAA-AGGATCTAAATGTGTATATTTT-AAA-A-GAAAA------CAA-TG-ATTT----T--AATTGAATTATCT-AT-----TTTCTAAAAAaat
gi|7 : TCCAAGATGATAGATA-T-TT----------T--AAAG---------GAA---GGTCGAACTCCAAGTTAAA-TTGTTA-------ATTTAA---AAAACAGT-T-G-AACAATCTCC---TGGA-TGCGC----TA----------C--ATA--TA-------GAA--TCAAT--------CTCCACGTTTACGTAACT-----A-TTTA-TATTT-AAAAAA---CAACATCTCCAAA-ATTATCTAAATGTGTTTA-TTT--------AAAA------AAATAG-TTCTTTCCTTAAATTGAAATATAT-ATATATATATTTAAAAAaagt
gi|8 : ataaattatgtctatgTTTCCAAAGTGATATATA-T-TT-GTATATATTT--AAAA---------AAA---GTTTAATCTCCAGGTTAAA-T-GCTATA------TTTCA---AAGATAGT-T-----CAATCTACAATAGGATTTATA----TA---G-----GCAGACA--CA-------AAAATTCAATCATTTAATCTCCAAGTTTACAagtcaat
gi|9 : aCAGAAATAGCCAATAAC----ATTATATAAGCATACTGATGGAAAGTGATTTAGTAGACATTACTATT--TACAAAC--CATTGTTTGTTGTTTAGATAC---AGC-AAAATACATA-------------CTTTA-----------ATTTATTTG-TTTAGAATATTTAA-CTG-T-A--AA----A-TGA-TA--TT---T-CATA-GTTCAGTCTCCAAGATGGTAGATATT-TT-ATATATGTTTC-ATAG---------AAA---GTagatacaaaatattcaagattatctcatgaaaacaaatctttaaaaacgcttaaagtactcaagttcagttgaaaaatcattttca
blockSeqs : G ATAT G C AGAATGACCTTC CC TGAACAT A A A C T T A T AAAGTTTCGG AGCCCGACACATAA G A A TA TG G TAC A TGTTAACCAATT TGTTT G G C G TA TAAA A A A . AGT C . G G T T G CAAAAACAGTCTGAA CTG T C T C G AAG G AAA AATAG T G TACATGTGTTTA AG GG TGTGTAT AT CATTTAATCTCC ATAAA C T C CAACATC T T GAATTG TAGCATAGAAAG TTCCTT T . ATATA C
blockSeqs : ATAC C . GAA . TGAATTG T . A A . T . T AAAGTTTCTG ATCCCGGAACATT C T T . . G . . T TATTT G . . A . . . A . . . . . G . . T G CAATG . A . . A A . . GAT AA . C TACGT . . . T ACCTT . . . . AATA . . GGAACG AGTAGTG TT T . . T
blockSeqs : TAT A . A T . G . A AAAGTTTGTG TGCTTGGAACGTT G T T . . T . . T TGGTT G . . . . . . A . . . . . T . . A A CAAAG . T . . T A . . GAA CT . A TAGG . . . C CTCC . . . . TC . . AAAAG AAATAGT CC T . . C
blockSeqs : TT C . A A . C . A AATGTTTGTG AGCCCAGAATA G A A . . T . . G TGTTT G . . . . . . A . . . . . . . . T G CAAAT . A . . G G . . GA CA . C TA . . . A ACCC . . . . CC . . TATA ATCTGT TC A . . T
blockSeqs : . . C T . G . A AAAGTTTGCT AGCCAATAACA C T T . . A . . T TACT G . . . . . . A . . . . . . . . T G CATAG . A . . T A . . . CA . C TA . . . A ATCA . . . . TC . . . CAATGA T . . . .
blockSeqs : . T T . T . A GTTTTG CGGAACA G A T . . T . . T CA A . . . . . . G . . . . . . . . A A AAAG . G . . T A . . . CG . A TA . . . A TCTC . . . . T .
blockSeqs : . . G . C . A AAA TGTCA . A . . . . . . A TT . . . . . . . . . . . . . . . . A A AAAA . T . . C A . . . TG . C TA . . . A ACCC . . . .
blockSeqs : A . G . A . ACA T . . . TT . . . . . . . . . . . . . . . . A G . . T . . . A . . . . . A TA . . . . CTCC
blockSeqs : G . . . . . . . .
blockSeqCons : TT******** AGCCCGGAACA**** TGTT** ** CAAAG********** A****** ***** TA************** NCCC******** ATC******* NAATAGN*******
originalCons : TTAAATNTCATTATACGTNATTTCTA-TATTG-GAA--------AGT--TTA--TGAA-AT-TATNAAAA-TCAAAGTACTTNAA-GTACTGAAACCTGGGCAAACAATNGTCAAGT-AGAAATGAAATAAT-A---A-GTTT-T-G--TCAGATGTAGCCCGGAAC-GTTATTATATAAGCATACTGATGGAAAGTGATNTAGTAGAGGTTACTATT--TACAAAC--CGTTGTTTGTTGTATGGGTAC---AAC-AAAATACATAAGACAGGATAATATTTTA-----------TTTTATTTG-TT-AGAATGTTTAA-CTG-T-A--AA----A-TAA-TA--TT---T-CATA-GTTCAGTCTCCAAGATGATAGATA-T-TT-ATATNTGTTTCAAAAG---------AAA---GTTCAATCTCCAAGTNAAA-T-GTTATA-----GTTTCA---AAGACAGT-T-G-A-CAATCTCC---CGGA-TGNTC----TA---G-----AC--ATA--TA-------AAAA-TCAAT------ACCTCCAAGTTTACATTACT-----G-TTTA-TATTT-AAAAAA---C------TCCAAA-ATGATCTAAATGTGTATA-TTT-GAA-A-GAAAA------AAA-AG-NTCT----TTAAATTGAATTATAT-AT-----TTTCTAAAAA
finalCons : TTAAATNTCATTATACGTNATTTCTA-TATTG-GAA--------AGT--TTATT--------TATNAAAA-TCAAAGTACTTNAA-GTACTGAAACCTGGGCAAACAATNGTCAAGT-AGAAATGAAATAAT-A---A-GTTT-T-G--TCAGATGTAGCCCGGAACA----TTATATAAGCATACTGATGGAAAGTGATNTAGTAGAGGTTACTATT--TACAAAC--CGTTGTTTGTTGTATGGGTAC---AAC-AAAATACATAAGACAGGATAATATTTTA-----------TTTTATTTGTT--AGAATGTTTAA-CTG-T-A--AA----A-TAA-TA--TT---T-CATA-GTTCAGTCTCCAAGATGATAGATA-T-TT-ATATNTGTTTCAAAG----------AAA---GTTCAATCTCCAAGTNAAA-T-GTTATA------TTTCA---AAGACAGT-T-----CAATCTCC---CGGA-TGNTCTA--------------C--ATA--TA-------AAAA-TCAATNCCC--------AAGTTTACATTACT-----G-TTTA-TATTT-AAAAAAATC-------TCCAAA-ATGATCTAAATGTGTATA-TTT-GAA-A-GAAAANAATAGN-------TCT----TTAAATTGAATTATAT-AT-----TTTCTAAAAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): AATGAAGTATACACAAAATTAGTAACTTTAACCAGACACTATCAATAAGTCACTGCTTTCA
Alignments
lowQualScore : 1 555555555555 111111111 3333333333333333 222222222222 111111 1 1111111111 111111 333 1111111111 22222222 444444444444444444444444 1111111111 1111 11111 111111 1111 111111 11111
lowQualScore : 1 9999 1 3 000000000000 1 888888888 8888 5 3 1 4 1 4 1 0000000000000000 66666 0 9999 4 4 5 1 3 66 66 6 777 4 333333333333 0 111111 2 0 4 4 8 66 9999 4 3 4 66 777 4 4 2 4 4 2 2 0 4 7777777777 777 55 1 4 4 5 222222 777 0 888 77 1 9999999999 00000000 333333333333333333333333 1 66 888 1111111111 4 3333 1 88888 4 9999 5 0 6 444444 9999 3 9999 555555 3 6 66666 3
lowQualScore : . .... . . ............ . ......... .... . . . . . . . ................ ..... . .... . . . . . .. .. . ... . ............ . ...... . . . . . .. .... . . . .. ... . . . . . . . . . .......... ... .. . . . . ...... ... . ... .. . .......... ........ ........................ . .. ... .......... . .... . ..... . .... . . . ...... .... . .... ...... . . ..... .
lowQualScore : 0 0000 0 3 333333333333 2 222222222 5555 0 4 0 4 0 0 1 9999999999999999 33333 1 4444 4 4 6 0 6 99 99 4 888 4 111111111111 8 222222 9 1 4 4 9 11 4444 4 6 4 11 888 4 4 0 0 0 4 3 9 0 5555555555 000 55 0 4 4 3 888888 888 9 999 33 0 4444444444 66666666 000000000000000000000000 0 11 111 6666666666 4 9999 9 44444 4 4444 0 7 7 333333 3333 5 3333 888888 5 7 77777 7
consensus : TTAAATNTCATTATACGTNATTTCTA-TATTG-GAA--------AGTTTA--T----T-TATNAA-AA-TCAAAGTACTTNAA-GTACTGAAACCTGGGCAAACAATNGTCAAGT-AGAAATGAAATAAT-AA---GTTT-T-G--TCAGATGTAGCCCGGAACA----TTAT-ATAAGCA-TACTGATGGAAAGTGATNTAGTAGAGGTTACTATT--TACAAAC--CGTTGTTTGTTGTATGGGTAC---AAC-AAAATACATAAGACAGGATAATATTTTA-----------TTTTATTTG-TT-AGAATGTTTAA-CTG-T-A--AA----A-TAA-TA--TT---T-CATA-GTTCAGTCTCCAAGATGATAGATA-T-TT-ATATNTGTTTC-AA----------AGAAA---GT--TCAATCTCCAAGTNAAA-T-GTTATA------TTTCA---AAGACAGTTGAACAATCTCCCGGATGNTC----------TACAT--------ATA-----------AAAA---------TCAATACCC--AAGTTTACA--TTAC----T-----G-TTTA----TATTT----AAAA-AA----ATCTCCAAA-ATGATCTAAATGTGTATA-TTTGAA-AGAAAANA--ATAG---NTCT----TTAAATTGAATTATAT-AT-----TTTCTAAAAA
Reference ( family-120 ) : TTAAATNTCATTATACGTNATTTCTA-TATTG-GAA--------AGTTTA--T----T-TATNAA-AA-TCAAAGTACTTNAA-GTACTGAAACCTGGGCAAACAATNGTCAAGT-AGAAATGAAATAAT-AA---GTTT-T-G--TCAGATGTAGCCCGGAACA----TTAT-ATAAGCA-TACTGATGGAAAGTGATNTAGTAGAGGTTACTATT--TACAAAC--CGTTGTTTGTTGTATGGGTAC---AAC-AAAATACATAAGACAGGATAATATTTTA-----------TTTTATTTG-TT-AGAATGTTTAA-CTG-T-A--AA----A-TAA-TA--TT---T-CATA-GTTCAGTCTCCAAGATGATAGATA-T-TT-ATATNTGTTTC-AA----------AGAAA---GT--TCAATCTCCAAGTNAAA-T-GTTATA------TTTCA---AAGACAGTT---CAATCTCCCGGATGNTC----------TACAT--------ATA-----------AAAA---------TCAATNCCC--AAGTTTACA--TTAC----T-----G-TTTA----TATTT----AAAA-AA----ATCTCCAAA-ATGATCTAAATGTGTATA-TTTGAA-AGAAAANA--ATAG---NTCT----TTAAATTGAATTATAT-AT-----TTTCTAAAAA
gi|1 : TTAAATCTCATT------TATTTTTC-TATTG--AA--------GGTTTAGGTGAAAT-TCTTAA-AA-TCAAAGTAGATAAA-GTACTGAAACCTGCTCAAACAATGGTCAAGT-AGAAATGAAATAAT-AATGAGTGT---G--TCAGATGTATCCCGGAACAGTTATTAT-ATATTCA-TACTGGTC---AGTTATATAGTAGAGGTTACTATT--TACAAAC--CGTTGTTTGTTGTATGGGTAC---AAC-AAAATACATAAGACAGGATGATATTTTA-----------TTTTATTTG-TT-AAAATGTTTAA-CTG-T-A--AA----A-TAA-TATGTT---T-TATACTTTCAGTTTCCAACATGAT------T-TT-ATATAT-TTTCAAA----------AGAAA---GT--TCAATCTCCAAGTAAAA-T-GTTATAATCATGTTTCA---AAGACAGTTGAACAATCTCCAAGATGATCAACATAGGTGCACAT--------ATA-----------AAAA---------TTAATATTTTAAAGATTACA--TTCC----T-----G-TTTA----TA-TT----AAAA-AA----A--TGAAAA-AT-ACCTAAATGTGCATA-TTTAAA-AAGAAAAA--AAAG---ATCT----GTAAGTTAAATTATATAAT-----TATCTAAAAA
gi|10 : ----T-TATAAA-AA-TCAAAGTACTTCAA-GTACTGAAACCCGGGCAAGCAATTGTAAAGT-AGATATATAATAATAAA---GTTT-CGG--TCAGATGTAGCCCAGAATA----TTAT-ATAAGTA-TCCTGATGGAAAATGATATAGtc
gi|11 : gaagaagttgttgagatatatgttgaaca----------AAAAA---GTAAT-AATCTCTTGGTTAAA-T-GCTATG------TTTCA---AAGATAGTT---CA-TCTCCAAGATGGTC----------TA--T--------ATA-----------ACAT---------TCAATCTCC--AAGTTTACA--TTTC----T-----G-TATA----TATTTA---AAAA-AA----ATATCCAAG-ATGATCTAc
gi|12 : tTATATGTGCTTTCTACTATTGAGAATGACCTTCAGTCCT--T----T-TATTATTAA-TCAAAGTACTTAAATATACTGAAACCTAGGCAAACAATTGTCAAAT-AGTTATGAAATAATAAA---GTTTCT-G--CCAGATGT
gi|13 : TTAA--T----A-TATAAA-AA---AAAATACTCTAA-GTAATGAAACTTGGGCAACCGATGGTCAAGT-AGAAATGAAATAATAAA---GTTTGT-G--TCGGATGTAGCCCGACACA-----TA--ATAAACAGTAC
gi|14 : tagtatcTAATATTTAA-----------TTTTATTTG-TTTGGAATGTTTAG-CTG-T-A--AATAAAA-TAAATA--TT---T-CATA-AACCAGTCTCCAAGATAATAGATAGT-TT-AAATTTGTTTC-Aaaa
gi|15 : taaatatattaaaattTTAAA-GTACTGAAACCTGGGCAAACAATCGTTAAGTAAAAAATGAAATAAT-AAT--GTTTGT-G--TCAGATGTTGT------CA----TTAT-ATAAACA-CACTGATCGCAAGCGATTT
gi|16 : AC---AAC-AAAA-ACATCAGACAGGATAATATTTTA-----------TATTATTTATTT-AGACT-TTCAAGTTG-TGA--AA----A-TAA-TG--TT---TCCCTT-GCCCAGTCTCC
gi|17 : ATTTAATAGAAATTACAATT--TACAAAC--TG----TTGTTGCATGGGTAC---AACAAAAACACATAAGACAGGATAA
gi|19 : CTGAAACCTGGGCAAACAATGGTCTAGT-AGAAATGGAATAAT-AA---
gi|2 : TTAAATGTCATTATACGTCATTTCTA-TATTG-GAA--------AGTTTA--T----T-TAT----AA-TCAAAGTACTTTAA-GTACTGAAACCAGGGCAAATAATTGTCAAGT-AGA--------------------------------TGTATCCCGGAACA----TT-T-ATAAGAA-TACCGATGGAAAATGATATAGAAGAGGTTAC---------AAAC--CGGTGATT-TTGTATGTGTAC---AAC-AAAACACATAAGACAGCTTAATAATTTA-----------GTTT-TTCA----AAAAT-TTAAA-CTG-T-A--AA----AATAA-TA--TT---T-TATA-GTTCAGTCTCCAAGATGATAGATA-TGTT-ATATTTGTTTC-AAAAACAGTCTGAAAAA---GT--TTAATTTCCAAGTACAA-T-GATATA------TTTCA---AAGACACTT---T--T-------ATGCTC----------TACAT--------ATA-----------CAAC---------CCAATACCC--AAGTTTACC--TTAC----T-----A-TATA----GA-TT----AAAA-GA----ATCTCCAAA-ATGATCTAAATGTGTATA-CTTTAT-AAAAAAT----CTG---TTTT----TTAAATCGAATTATAT-AT-----TTT-TAAAaaa
gi|3 : -TCAAAGTCCTTTAA-GTACTGAAACCTGGGTAAACA--CGTGAACT-AAAAAC--------------GTTT-T-G--TCAGATGT--------ACA----TTAT-ATGAGCA-TACCGAT-AAAAGTGGTTTAGTAGAGATTATTATTTATACAAA----GGTGTTTGTTGTATAGGCAA---AAT-AAAGTATATACTGCAGGATAATATTTTATGTTAACCAATTTTTCTTTA-CT-AGCAAGTTTAA-CCA-T-A--AA----A-T--------------------TTCAATTTCAAAGATGATAGACA-T-TT-GCATATATTTC-AA----------TGAAA---GT--TCAATCTCCAAATTAAA-T-GTTTTA------TTTCA---AAGAATGTT---CAATCTGCCTGATGAAC----------TACAT--------GTGTTTACATGTT-AAAA---------TCAATATCA--TAGTTTACA--TGAT----T-----G-CATA----TGTTT----CAAA-AG----ACCTTCAAGTATGATATAAATATGTATA-CTTGAATTGAAAATAGCATAGAAAGTCT----CCAAGTTGAA--ATAT-GT-----TTTCCAAA
gi|4 : A-TCAAAGTTCCTGAA-GTACTGAAAATTAGGCAAAAAATGGTCAATA-AGAAATGAAAAAAA-AA---A---------------------CGGAACA----TTAT-ATAAACA-TCCTGTTGGAAAGTG-TATGGTAGAGGTTGTTGCT--TACAAACTGCGTTGTTTGATGTATGTGAAC---AAT-AAAATACATTAGCCAGGATAATATTTTA------------TTTGT----TT-AGAATGTTAAG-CTGCC-A--AA----A-T-A-CA--TT---T-CATG-GT------TTTAAGATGATAGATAGT-TT-ATATTTGTTCC-AA----------AGAAACTGGT--TCAATCTCCAAGTAAAA-T-GGGATG------TTTCA---AAGGCAGCTAAACAATCTCCCAGATACTC----------TACAT--------ATA-----------CAAA---------TCAATTCTC--AGGTGTACA--GAAC----TATAAAG-TTTA----TTTTT------AA-AA----ATTTCCAAA-ATGATGTCAATGTGTATA-TTCGGA-ACGAAATA--GTAGT--GTCC----TCAAATTAAATTACAT-AT-----TTTTTAAAAAcaaagttta
gi|5 : A--T----TGTATCAA-AAATAAAAAT-CTTAAA-ATACTGACCCCTGGGCAAACAAAGGTCAAGT-AGAAATGAAATAAT-AA---AGTT-T-GCTTGAGATGTTGCTTGGAACG----TTTTTATAAACA-TACTGATCGAAAGTGATATAGCAAAGGTTACAATT--TACAAAC--CGTTGCTTGTTGTATGTGTAC---AAT-AAAATACATAATACAGGATAATATTTTA-----------TTTCAGT---TT-AGAATGTTTAG-CTG-TAA--AA----A-TAA-TA--TT---T-CATA-GTTCAGTCTCCATGATGATAGGTT-T-TT-ATATTTGT-------------------------T--TCAATCTCCAAGTAAAACT-G-TATA------CTTCAAAGAAGAAAGTGGGACAATCCCCCAAATGCGC----------TACAT--------ATA-----------AAAA---------ACAATACCC--AAGTTTACA---TAT----T-----GCTTTT----TTTTT----AAGA-AA----Aaaaaaagtaaat
gi|6 : gaagcagacgctagatatgcttgaATTATT--TACAAAC--GGATGTTAATTGCATGGATACTACAAC-AAGATACACCAGAAAGGATAATATTTTA-----------TTCTATGTGGTT-AGAATGTTCAA-CTG-T-ATAAA----A-TAA-TA--CTAGTT-CGAG-GTTCAGTCTCTAAGATGATTAATA-T-TTTATATATATATC-AA----------ATAAA---TT--TCAATCTCCAAATGAAA-T-GTTATA------TTTGG---AAGATAGCTGATCAATGTCCCGGATGATT----------TACGTC-------ATAGGTATGTGTATAAAA---------TCAATACCT--TAGTTTACA--TTAC----T-----G-TTTAT---TATTC-----AAA-AA----ATCTTAAAA-AGGATCTAAATGTGTATATTTTAAA-AGAAAACA--AT-G---ATTT----T--AATTGAATTATCT-AT-----TTTCTAAAAAat
gi|7 : TCCAAGATGATAGATA-T-TT-----------T-AA----------AGGAA---GG--TCGAACTCCAAGTTAAA-TTGTTA-A------TTTAA---AAAACAGTTGAACAATCTCCTGGATGCGC----------TACAT--------ATA-----------GAA----------TCAATCTCC--ACGTTTACG--TAAC----T-----A-TTTA----TATTT----AAAA-AACAACATCTCCAAA-ATTATCTAAATGTGTTTA-TTT------AAAAAA--ATAG---TTCTTTCCTTAAATTGAAATATAT-ATATATATATTTAAAAAaagt
gi|8 : ataaattatgtctatgTTTCCAAAGTGATATATA-T-TT-GTATATATTT--AA----------AAAAA---GT--TTAATCTCCAGGTTAAA-T-GCTATA------TTTCA---AAGATAGTT---CAATCTACAATAGGATT----------TATATAGGCAGACACA-----------AAAATTCAATCATTTAATCTCC--AAGTTTACAAGATACAAAAT-----A-TTCAAGATTATCTCATGAAAACAA----ATCTTTAAA-Aagtcaat
gi|9 : aCAGAAATAGCCAATAACA----TTAT-ATAAGCA-TACTGATGGAAAGTGATTTAGTAGACATTACTATT--TACAAAC--CATTGTTTGTTGTTTAGATAC---AGC-AAAATACATA-------------CTTTA-----------ATTTATTTG-TTTAGAATATTTAA-CTG-T-A--AA----A-TGA-TA--TT---T-CATA-GTTCAGTCTCCAAGATGGTAGATATT-TT-ATATATGTTTC-AT----------AGAAA---GT--acgcttaaagtactcaagttcagttgaaaaatcattttca
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): AATGAAGTATACACAAAATTAGTAACTTTAACCAGACACTATCAATAAGTCACTGCTTTCA