lowQualScore : 9 1 4 333333 1 4444 0
lowQualScore : . . . ...... . .... .
lowQualScore : 0 2 4 111111 1 6666 5
consensus : CGGACGAA-GCGGCGACTA------TATGCTTCCC-C----CCTTTGGGGGAGCATAA
Reference ( gi|14 ) : CGCACGAA-GCGGTGACTA------TATGCTTCCC-C----CCTTTGGGGGAGCATAA
gi|6 : CACACGAA-GCGGCGACTA------TATGCTTCCC-C----ACTCTGGAGGAGCATAA
gi|12 : CGGATGAA-GCGACGACTA------TATGCTTCCC-T----CCTTTGGGGGAGCATAAt
gi|19 : CGGACGAC-GCGGCGACTA------TATGCTTCCC-C----CCTTTGGGAGAGCATA
gi|15 : CGGACGAA-ATGGCGACTA------TATGCTTCCC-C----CCTTTGGGGGAGTATA
gi|16 : aCGGACGAA-GCGGCGACTA------TATGGTACCC-C----CCTTTGGGGAAGCATAA
gi|30 : CACACGAA-GCGGCGACTA------TATGCTTCAC-C----CCTTTTGGGGAGCA
gi|8 : CGGACGAA-GCGGCGAATA------TATGCTTTCC-C----CCTTTGGATGAGCATAA
gi|24 : aCGGACGGA-GCAGCAACTA------TATGCTTCCC-C----CCTTTGGGTGAGCAT
gi|5 : CGGACGAA-GTGGCCACTA------TATGCTTCCC-C----CTTTAGGGGAAGCATAA
gi|26 : CGGACGAA-GCGGCAACTA------TATGCTTCTC-C----CCTTTTGGGGAGCt
gi|37 : aCGTACGAA-GCGGT-ACTA------TATGCTTCCC-G----CCTTTGGG
gi|11 : caCGGATGAA-GCGGTACCTT------TATGCATTCC-C----CCTTT-GGGAAGCATAA
gi|35 : caCGGACAAA-GTGTTAACTA------TATGCTTCCC-C----CCTTT
gi|18 : ggcaGCACGAA-GCGGCGTCTT------TATGCTTCCC-C----CCTTTGAGAGAGCATAA
gi|31 : ACAAA-ACGGTGACTA------TATCCTTCCC-C----CCTTTGGGGGAGCATAAt
gi|28 : ACGAA-GCGGCGACTA------TATGCTTCCA-C----CCTTTGGGGGAGCAT
gi|27 : cgACGAA-GCGGCGACTA------TATGCTTCCC-C----CCTTTAGGGGAGCA
gi|23 : cagACGAA-GCGGCGACTA------T--GCTTCCC-C----CCTTTGGGGGAGCATAA
gi|32 : acgACAAA-GCGGCGAGTA------TATACTTCCC-C----CCTTTGGGGGAGCATAA
gi|29 : ACGAA-GTGGCGACTA------TATGTTTCCC-C----CCTTTGAGAGAGCATAA
gi|21 : ATGAA-GCGGCGACTA------TATGCTTTCC-C----CCTTTGGGGGAACAT
gi|22 : cagACAAA-G-GGCGACTA------TATGCTTACC-C----CCTTTGGGGGAGCATAA
gi|17 : ggACGAA-GCGGCAACAT------TATGCTTCCC-C----CCTTCGGTGGAGCATAA
gi|4 : ggACGAA-ACGA-AACTA------TATGCTTCCCAC----TTTTTGGGGGAGCATAAt
gi|7 : atggATGAA-GCGGCGACTT------TATGTTTTCC-C----CCTTT-GGGGAGCACAa
gi|9 : acagACGAA-GTGGCGACTA------TATACTTCCC-CAAAATCTTTTGGGAAGCATAga
gi|40 : gACGAA-GCGGCCACTA------TATACTTCCT-C----CCTTT
gi|3 : caccgACGAGTGCGGCAACTA------TGTGCTTCCC-CGAAATGTTTCAGGAAGCATAA
gi|1 : gACAAA-GCGGCAACTACCGGTATATGC-TCCC-C----CCTTT-GTGAAGTATAa
gi|33 : cacagAA-GCGGCGACTA------TATGCTTCCC-C----CCTTTGAAGGAGCATAA
gi|39 : A-GCGGTGACTA------TATGCTTCCC-C----CCTTTGGGGGAGCA
gi|36 : -GCGGCGACTA------TATGCTTACC-C----CCTTT-AGGGAGCATAA
gi|10 : GGCGATTA------TATGCTTCCC-C----GATTTGGGAGAGCATAAt
gi|34 : gacagatgaGGCGGCTT------TATGCTTTCC-C----CATT-GGGGGAGCATAAta
gi|38 : gataaGTGACTA------TATGCTTACC-C----GCTTTTGGGGAGCATAA
gi|13 : ACTA------TATGCTTCCC-C----ACTTTTGGGGAGCATAAtaa
gi|25 : atggatggacgcTA------TATGCTTCCC-C----CATTTGGGGGAGCATAaa
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|2 ): CAGACTGATAGACGGCAACTATATGCTTTAATGATTTTTTTTCAGGAAACA
Unaligned ( gi|20 ): GATGGACAAAACAGCAGCTATATGCTCTCCCTTCATGTGAGTATA
Unaligned ( gi|41 ): CACGGACGAAACGGCGACTGTAGGCTTCTCC
Alignments
lowQualScore : 1 111 222222 1 4444 0
lowQualScore : . ... ...... . .... .
lowQualScore : 1 888 999999 0 2222 3
consensus : CGGACGAA-GCGGCGAC---TA------TATGCTTCCC-C----CCTTTGGGGGAGCATAA
Reference ( family-1197 ) : CGGACGAA-GCGGCGAC---TA------TATGCTTCCC-C----CCTTTGGGGGAGCATAA
gi|1 : CAGACAAA-GCGGCAAC---TACCGGTATATGC-TCCC-C----CCTTT-GTGAAGTATA
gi|10 : caCAGATGA----GGCGAT---TA------TATGCTTCCC-C----GATTTGGGAGAGCATAA
gi|11 : gaCGGATGAA-GCGGTACC---TT------TATGCATTCC-C----CCTTT-GGGAAGCATAAta
gi|12 : caCGGATGAA-GCGACGAC---TA------TATGCTTCCC-T----CCTTTGGGGGAGCATAA
gi|13 : AC---TA------TATGCTTCCC-C----ACTTTTGGGGAGCATAA
gi|14 : atggatggacgcCGCACGAA-GCGGTGAC---TA------TATGCTTCCC-C----CCTTTGGGGGAGCATAAaa
gi|15 : CGGACGAA-ATGGCGAC---TA------TATGCTTCCC-C----CCTTTGGGGGAGTATA
gi|16 : aCGGACGAA-GCGGCGAC---TA------TATGGTACCC-C----CCTTTGGGGAAGCATAA
gi|17 : GGACGAA-GCGGCAAC---AT------TATGCTTCCC-C----CCTTCGGTGGAGCATAA
gi|18 : ACGAA-GCGGCGTC---TT------TATGCTTCCC-C----CCTTTGAGAGAGCATAAt
gi|19 : gcCGGACGAC-GCGGCGAC---TA------TATGCTTCCC-C----CCTTTGGGAGAGCATAt
gi|20 : GGACAAA-ACAGCAGC---TA------TATGCT--CT-C----CCTTCATGTGAGTATA
gi|21 : gatCAGATGAA-GCGGCGAC---TA------TATGCTTTCC-C----CCTTTGGGGGAACAT
gi|22 : GGACAAA-G-GGCGAC---TA------TATGCTTACC-C----CCTTTGGGGGAGCATAA
gi|23 : GACGAA-GCGGCGAC---TA------T--GCTTCCC-C----CCTTTGGGGGAGCATAA
gi|24 : acCGGACGGA-GCAGCAAC---TA------TATGCTTCCC-C----CCTTTGGGTGAGCAT
gi|25 : A-GCGACTACATGTA------TATGCTTCCC-C----CATTTGGGGGAGCATA
gi|26 : CGGACGAA-GCGGCAAC---TA------TATGCTTCTC-C----CCTTTTGGGGAGCgta
gi|27 : aCAGACGAA-GCGGCGAC---TA------TATGCTTCCC-C----CCTTTAGGGGAGCA
gi|28 : GACGAA-GCGGCGAC---TA------TATGCTTCCA-C----CCTTTGGGGGAGCAT
gi|29 : cACGAA-GTGGCGAC---TA------TATGTTTCCC-C----CCTTTGAGAGAGCATAA
gi|3 : GACGAGTGCGGCAAC---TA------TGTGCTTCCC-CGAAATGTTTCAGGAAGCATAA
gi|30 : ACGAA-GCGGCGAC---TA------TATGCTTCAC-C----CCTTTTGGGGAGCAa
gi|31 : cacACAAA-ACGGTGAC---TA------TATCCTTCCC-C----CCTTTGGGGGAGCATAA
gi|32 : ACAAA-GCGGCGAG---TA------TATACTTCCC-C----CCTTTGGGGGAGCATAA
gi|33 : AA-GCGGCGAC---TA------TATGCTTCCC-C----CCTTTGAAGGAGCATAA
gi|34 : GGCGGC---TT------TATGCTTTCC-C----CA-TTGGGGGAGCATAA
gi|35 : gataaCGGACAAA-GTGTTAAC---TA------TATGCTTCCC-C----CCTTT
gi|36 : ggca-GCGGCGAC---TA------TATGCTTACC-C----CCTTT-AGGGAGCATAA
gi|37 : CGTACGAA-GCGGT-AC---TA------TATGCTTCCC-G----CCTTTGGGt
gi|38 : caGTGAC---TA------TATGCTTACC-C----GCTTTTGGGGAGCATAA
gi|39 : A-GCGGTGAC---TA------TATGCTTCCC-C----CCTTTGGGGGAGCAtaa
gi|4 : GGACGAA-ACGA-AAC---TA------TATGCTTCCCAC----TTTTTGGGGGAGCATAA
gi|40 : atGACGAA-GCGGCCAC---TA------TATACTTCCT-C----CCTTTa
gi|41 : caccCGGACGAA-ACGGCGAC---TG------TAGGCTTCTC-C----
gi|5 : caCGGACGAA-GTGGCCAC---TA------TATGCTTCCC-C----CTTTAGGGGAAGCATAA
gi|6 : ACGAA-GCGGCGAC---TA------TATGCTTCCC-C----ACTCTGGAGGAGCATAAt
gi|7 : cacCAGATGAA-GCGGCGAC---TT------TATGTTTTCC-C----CCTTT-GGGGAGCACAt
gi|8 : aCGGACGAA-GCGGCGAA---TA------TATGCTTTCC-C----CCTTTGGATGAGCATAAga
gi|9 : aGACGAA-GTGGCGAC---TA------TATACTTCCC-CAAAATCTTTTGGGAAGCATA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): CAGACTGATAGACGGCAACTATATGCTTTAATGATTTTTTTTCAGGAAACA
Alignments
lowQualScore : 1 111 222222 1 4444 0
lowQualScore : . ... ...... . .... .
lowQualScore : 1 888 999999 0 2222 3
consensus : CGGACGAA-GCGGCGAC---TA------TATGCTTCCC-C----CCTTTGGGGGAGCATAA
Reference ( family-1197 ) : CGGACGAA-GCGGCGAC---TA------TATGCTTCCC-C----CCTTTGGGGGAGCATAA
gi|1 : CAGACAAA-GCGGCAAC---TACCGGTATATGC-TCCC-C----CCTTT-GTGAAGTATA
gi|10 : caCAGATGA----GGCGAT---TA------TATGCTTCCC-C----GATTTGGGAGAGCATAA
gi|11 : gaCGGATGAA-GCGGTACC---TT------TATGCATTCC-C----CCTTT-GGGAAGCATAAta
gi|12 : caCGGATGAA-GCGACGAC---TA------TATGCTTCCC-T----CCTTTGGGGGAGCATAA
gi|13 : AC---TA------TATGCTTCCC-C----ACTTTTGGGGAGCATAA
gi|14 : atggatggacgcCGCACGAA-GCGGTGAC---TA------TATGCTTCCC-C----CCTTTGGGGGAGCATAAaa
gi|15 : CGGACGAA-ATGGCGAC---TA------TATGCTTCCC-C----CCTTTGGGGGAGTATA
gi|16 : aCGGACGAA-GCGGCGAC---TA------TATGGTACCC-C----CCTTTGGGGAAGCATAA
gi|17 : GGACGAA-GCGGCAAC---AT------TATGCTTCCC-C----CCTTCGGTGGAGCATAA
gi|18 : ACGAA-GCGGCGTC---TT------TATGCTTCCC-C----CCTTTGAGAGAGCATAAt
gi|19 : gcCGGACGAC-GCGGCGAC---TA------TATGCTTCCC-C----CCTTTGGGAGAGCATAt
gi|20 : GGACAAA-ACAGCAGC---TA------TATGCT--CT-C----CCTTCATGTGAGTATA
gi|21 : gatCAGATGAA-GCGGCGAC---TA------TATGCTTTCC-C----CCTTTGGGGGAACAT
gi|22 : GGACAAA-G-GGCGAC---TA------TATGCTTACC-C----CCTTTGGGGGAGCATAA
gi|23 : GACGAA-GCGGCGAC---TA------T--GCTTCCC-C----CCTTTGGGGGAGCATAA
gi|24 : acCGGACGGA-GCAGCAAC---TA------TATGCTTCCC-C----CCTTTGGGTGAGCAT
gi|25 : A-GCGACTACATGTA------TATGCTTCCC-C----CATTTGGGGGAGCATA
gi|26 : CGGACGAA-GCGGCAAC---TA------TATGCTTCTC-C----CCTTTTGGGGAGCgta
gi|27 : aCAGACGAA-GCGGCGAC---TA------TATGCTTCCC-C----CCTTTAGGGGAGCA
gi|28 : GACGAA-GCGGCGAC---TA------TATGCTTCCA-C----CCTTTGGGGGAGCAT
gi|29 : cACGAA-GTGGCGAC---TA------TATGTTTCCC-C----CCTTTGAGAGAGCATAA
gi|3 : GACGAGTGCGGCAAC---TA------TGTGCTTCCC-CGAAATGTTTCAGGAAGCATAA
gi|30 : ACGAA-GCGGCGAC---TA------TATGCTTCAC-C----CCTTTTGGGGAGCAa
gi|31 : cacACAAA-ACGGTGAC---TA------TATCCTTCCC-C----CCTTTGGGGGAGCATAA
gi|32 : ACAAA-GCGGCGAG---TA------TATACTTCCC-C----CCTTTGGGGGAGCATAA
gi|33 : AA-GCGGCGAC---TA------TATGCTTCCC-C----CCTTTGAAGGAGCATAA
gi|34 : GGCGGC---TT------TATGCTTTCC-C----CA-TTGGGGGAGCATAA
gi|35 : gataaCGGACAAA-GTGTTAAC---TA------TATGCTTCCC-C----CCTTT
gi|36 : ggca-GCGGCGAC---TA------TATGCTTACC-C----CCTTT-AGGGAGCATAA
gi|37 : CGTACGAA-GCGGT-AC---TA------TATGCTTCCC-G----CCTTTGGGt
gi|38 : caGTGAC---TA------TATGCTTACC-C----GCTTTTGGGGAGCATAA
gi|39 : A-GCGGTGAC---TA------TATGCTTCCC-C----CCTTTGGGGGAGCAtaa
gi|4 : GGACGAA-ACGA-AAC---TA------TATGCTTCCCAC----TTTTTGGGGGAGCATAA
gi|40 : atGACGAA-GCGGCCAC---TA------TATACTTCCT-C----CCTTTa
gi|41 : caccCGGACGAA-ACGGCGAC---TG------TAGGCTTCTC-C----
gi|5 : caCGGACGAA-GTGGCCAC---TA------TATGCTTCCC-C----CTTTAGGGGAAGCATAA
gi|6 : ACGAA-GCGGCGAC---TA------TATGCTTCCC-C----ACTCTGGAGGAGCATAAt
gi|7 : cacCAGATGAA-GCGGCGAC---TT------TATGTTTTCC-C----CCTTT-GGGGAGCACAt
gi|8 : aCGGACGAA-GCGGCGAA---TA------TATGCTTTCC-C----CCTTTGGATGAGCATAAga
gi|9 : aGACGAA-GTGGCGAC---TA------TATACTTCCC-CAAAATCTTTTGGGAAGCATA
blockSeqs : T ATG . A GAAA
blockSeqs : . . . . AAAA
blockSeqs : . . . . .
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blockSeqs : . . . . .
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blockSeqs : . . . . .
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blockSeqs : . . . . .
blockSeqs : . . . . .
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blockSeqs : . . . . .
blockSeqs : . . . . .
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blockSeqs : . . . . .
blockSeqs : . . . . .
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blockSeqs : . . . . .
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blockSeqs : . . . . .
blockSeqs : . . . . .
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blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqCons : ******
originalCons : CGGACGAA-GCGGCGAC---TA------TATGCTTCCC-C----CCTTTGGGGGAGCATAA
finalCons : CGGACGAA-GCGGCGAC---TA------TATGCTTCCC-C----CCTTTGGGGGAGCATAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): CAGACTGATAGACGGCAACTATATGCTTTAATGATTTTTTTTCAGGAAACA
Alignments
lowQualScore : 1 111 222222 1 4444 0
lowQualScore : . ... ...... . .... .
lowQualScore : 1 888 999999 0 2222 3
consensus : CGGACGAA-GCGGCGAC---TA------TATGCTTCCC-C----CCTTTGGGGGAGCATAA
Reference ( family-1197 ) : CGGACGAA-GCGGCGAC---TA------TATGCTTCCC-C----CCTTTGGGGGAGCATAA
gi|1 : CAGACAAA-GCGGCAAC---TACCGGTATATGC-TCCC-C----CCTTT-GTGAAGTATA
gi|10 : caCAGATGA----GGCGAT---TA------TATGCTTCCC-C----GATTTGGGAGAGCATAA
gi|11 : gaCGGATGAA-GCGGTACC---TT------TATGCATTCC-C----CCTTT-GGGAAGCATAAta
gi|12 : caCGGATGAA-GCGACGAC---TA------TATGCTTCCC-T----CCTTTGGGGGAGCATAA
gi|13 : AC---TA------TATGCTTCCC-C----ACTTTTGGGGAGCATAA
gi|14 : atggatggacgcCGCACGAA-GCGGTGAC---TA------TATGCTTCCC-C----CCTTTGGGGGAGCATAAaa
gi|15 : CGGACGAA-ATGGCGAC---TA------TATGCTTCCC-C----CCTTTGGGGGAGTATA
gi|16 : aCGGACGAA-GCGGCGAC---TA------TATGGTACCC-C----CCTTTGGGGAAGCATAA
gi|17 : GGACGAA-GCGGCAAC---AT------TATGCTTCCC-C----CCTTCGGTGGAGCATAA
gi|18 : ACGAA-GCGGCGTC---TT------TATGCTTCCC-C----CCTTTGAGAGAGCATAAt
gi|19 : gcCGGACGAC-GCGGCGAC---TA------TATGCTTCCC-C----CCTTTGGGAGAGCATAt
gi|20 : GGACAAA-ACAGCAGC---TA------TATGCT--CT-C----CCTTCATGTGAGTATA
gi|21 : gatCAGATGAA-GCGGCGAC---TA------TATGCTTTCC-C----CCTTTGGGGGAACAT
gi|22 : GGACAAA-G-GGCGAC---TA------TATGCTTACC-C----CCTTTGGGGGAGCATAA
gi|23 : GACGAA-GCGGCGAC---TA------T--GCTTCCC-C----CCTTTGGGGGAGCATAA
gi|24 : acCGGACGGA-GCAGCAAC---TA------TATGCTTCCC-C----CCTTTGGGTGAGCAT
gi|25 : A-GCGACTACATGTA------TATGCTTCCC-C----CATTTGGGGGAGCATA
gi|26 : CGGACGAA-GCGGCAAC---TA------TATGCTTCTC-C----CCTTTTGGGGAGCgta
gi|27 : aCAGACGAA-GCGGCGAC---TA------TATGCTTCCC-C----CCTTTAGGGGAGCA
gi|28 : GACGAA-GCGGCGAC---TA------TATGCTTCCA-C----CCTTTGGGGGAGCAT
gi|29 : cACGAA-GTGGCGAC---TA------TATGTTTCCC-C----CCTTTGAGAGAGCATAA
gi|3 : GACGAGTGCGGCAAC---TA------TGTGCTTCCC-CGAAATGTTTCAGGAAGCATAA
gi|30 : ACGAA-GCGGCGAC---TA------TATGCTTCAC-C----CCTTTTGGGGAGCAa
gi|31 : cacACAAA-ACGGTGAC---TA------TATCCTTCCC-C----CCTTTGGGGGAGCATAA
gi|32 : ACAAA-GCGGCGAG---TA------TATACTTCCC-C----CCTTTGGGGGAGCATAA
gi|33 : AA-GCGGCGAC---TA------TATGCTTCCC-C----CCTTTGAAGGAGCATAA
gi|34 : GGCGGC---TT------TATGCTTTCC-C----CA-TTGGGGGAGCATAA
gi|35 : gataaCGGACAAA-GTGTTAAC---TA------TATGCTTCCC-C----CCTTT
gi|36 : ggca-GCGGCGAC---TA------TATGCTTACC-C----CCTTT-AGGGAGCATAA
gi|37 : CGTACGAA-GCGGT-AC---TA------TATGCTTCCC-G----CCTTTGGGt
gi|38 : caGTGAC---TA------TATGCTTACC-C----GCTTTTGGGGAGCATAA
gi|39 : A-GCGGTGAC---TA------TATGCTTCCC-C----CCTTTGGGGGAGCAtaa
gi|4 : GGACGAA-ACGA-AAC---TA------TATGCTTCCCAC----TTTTTGGGGGAGCATAA
gi|40 : atGACGAA-GCGGCCAC---TA------TATACTTCCT-C----CCTTTa
gi|41 : caccCGGACGAA-ACGGCGAC---TG------TAGGCTTCTC-C----
gi|5 : caCGGACGAA-GTGGCCAC---TA------TATGCTTCCC-C----CTTTAGGGGAAGCATAA
gi|6 : ACGAA-GCGGCGAC---TA------TATGCTTCCC-C----ACTCTGGAGGAGCATAAt
gi|7 : cacCAGATGAA-GCGGCGAC---TT------TATGTTTTCC-C----CCTTT-GGGGAGCACAt
gi|8 : aCGGACGAA-GCGGCGAA---TA------TATGCTTTCC-C----CCTTTGGATGAGCATAAga
gi|9 : aGACGAA-GTGGCGAC---TA------TATACTTCCC-CAAAATCTTTTGGGAAGCATA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): CAGACTGATAGACGGCAACTATATGCTTTAATGATTTTTTTTCAGGAAACA