lowQualScore : 1 1
lowQualScore : 3 7 555555
lowQualScore : . . ......
lowQualScore : 9 6 888888
consensus : TGGTAGGGGACTTATGTATTGCTTGC------AATACTCCAGTGTCTTG
Reference ( gi|14 ) : TGGTAGTGGACTTATGTATTGCATGC------AATACTCCAGTGTCTTG
gi|8 : TGGTAGAGGACTTATGTATAGCTTGC------AATACTCCAGTTTCTT
gi|22 : aacTGGTAGGGGACTTATATATTGCTTGC------AATACTCCA
gi|19 : TGGTTGTGGATTTATGTATTGCTTGC------AATACT-CAGT
gi|12 : aacTGGTAGGAAACTTATGCATTTCTAGC------AATACTCTAGTGTCTTG
gi|13 : TGGTAGGAGACTTGTGTATTACTTGC------ATTACTCCTATGTCTTGt
gi|6 : TGGTAGAGGATTTCTGTATATCTTGC------TGTACTCCAGTGTCTTt
gi|9 : taaacGGTAGGGGACTTATGTATTGCTTGC------CATACTCCACTGTCT
gi|16 : aaccGATAGGGGACTTATATATTGCTTGC------AATACTTCAGTGACTT
gi|17 : GGTAGGGTACTTATACATTGCTTGC------AATACTCTAGTGTCT
gi|21 : GGTAAGGGACTTATGTATTGCTTGC------AATACTa
gi|15 : GGTAGGGGACAAATGTATTACTTGC------AATACTCCtgactg
gi|4 : atcGTAGGGGACTTATTTACTGCTTGC------AGTACTCTAGTGTCTTGgccgttt
gi|11 : aagcaGTAGGGGACTTAGGTATTGCTTGT------GAAATTCCAGTGTCTTGttta
gi|10 : caGTAGATGACTTATGTATTGCTTGC------AATACTCAGATGTCt
gi|5 : aaccaGTAGGGGACTAATGTATTAC---T------AATATTACACTGTCTTGa
gi|1 : gcaaaccaAGGGGACATATGTATTGCGTGCAATACTAATACTTCAGTGTCTTGttta
gi|23 : accagtaAGGGGACTTATGTATTGCTTGT------AATACTCCAttcaa
gi|18 : gGGACTTTTGTATTGCTTGC------AATACTCCAGTGTCTTt
gi|7 : gtatgGGACTTGTGTATTGCTTGC------AATGCTCCAGTGTCCTG
gi|20 : aaccaACTTATATATTGCTTGC------AATACTTCAGTGTCATGttgc
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|2 ): GTAGGGGTGTTACATGTATGTATGGCTTGCAACTCTGAAAGCACTGGGTCTT
Unaligned ( gi|3 ): GGTAGGGGTGTTACATGTATGTATGGCTTGCAACTCTGAAAGCACTGGGTCT
Alignments
lowQualScore : 555555
lowQualScore : ......
lowQualScore : 555555
consensus : TGGTAGGGGACTTATGTATTGCTTGC------AATACTCCAGTGTCTTG
Reference ( family-110 ) : TGGTAGGGGACTTATGTATTGCTTGC------AATACTCCAGTGTCTTG
gi|1 : AGGGGACATATGTATTGCGTGCAATACTAATACTTCAGTGTCTTG
gi|10 : accagtaGTAGATGACTTATGTATTGCTTGC------AATACTCAGATGTCttcaa
gi|11 : aaccaGTAGGGGACTTAGGTATTGCTTGT------GAAATTCCAGTGTCTTGa
gi|12 : caTGGTAGGAAACTTATGCATTTCTAGC------AATACTCTAGTGTCTTGt
gi|13 : TGGTAGGAGACTTGTGTATTACTTGC------ATTACTCCTATGTCTTGt
gi|14 : TGGTAGTGGACTTATGTATTGCATGC------AATACTCCAGTGTCTTGt
gi|15 : GGTAGGGGACAAATGTATTACTTGC------AATACTCC
gi|16 : atcGATAGGGGACTTATATATTGCTTGC------AATACTTCAGTGACTTgccgttt
gi|17 : GGTAGGGTACTTATACATTGCTTGC------AATACTCTAGTGTCT
gi|18 : GTATGGGACTTTTGTATTGCTTGC------AATACTCCAGTGTCTTa
gi|19 : TGGTTGTGGATTTATGTATTGCTTGC------AATACT-CAGT
gi|20 : aacACTTATATATTGCTTGC------AATACTTCAGTGTCATG
gi|21 : aGGTAAGGGACTTATGTATTGCTTGC------AATACTtt
gi|22 : TGGTAGGGGACTTATATATTGCTTGC------AATACTCCAtgactg
gi|23 : AGGGGACTTATGTATTGCTTGT------AATACTCCA
gi|4 : gGTAGGGGACTTATTTACTGCTTGC------AGTACTCTAGTGTCTTGt
gi|5 : aagcaGTAGGGGACTAATGTATTACT---------AATATTACACTGTCTTGttta
gi|6 : gcaaaccaTGGTAGAGGATTTCTGTATATCTTGC------TGTACTCCAGTGTCTTttta
gi|7 : taaacGGACTTGTGTATTGCTTGC------AATGCTCCAGTGTCCTG
gi|8 : aaccaTGGTAGAGGACTTATGTATAGCTTGC------AATACTCCAGTTTCTTttgc
gi|9 : aacGGTAGGGGACTTATGTATTGCTTGC------CATACTCCACTGTCT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): GTAGGGGTGTTACATGTATGTATGGCTTGCAACTCTGAAAGCACTGGGTCTT
Unaligned ( gi|3 ): GGTAGGGGTGTTACATGTATGTATGGCTTGCAACTCTGAAAGCACTGGGTCT
Alignments
lowQualScore : 555555
lowQualScore : ......
lowQualScore : 555555
consensus : TGGTAGGGGACTTATGTATTGCTTGC------AATACTCCAGTGTCTTG
Reference ( family-110 ) : TGGTAGGGGACTTATGTATTGCTTGC------AATACTCCAGTGTCTTG
gi|1 : AGGGGACATATGTATTGCGTGCAATACTAATACTTCAGTGTCTTG
gi|10 : accagtaGTAGATGACTTATGTATTGCTTGC------AATACTCAGATGTCttcaa
gi|11 : aaccaGTAGGGGACTTAGGTATTGCTTGT------GAAATTCCAGTGTCTTGa
gi|12 : caTGGTAGGAAACTTATGCATTTCTAGC------AATACTCTAGTGTCTTGt
gi|13 : TGGTAGGAGACTTGTGTATTACTTGC------ATTACTCCTATGTCTTGt
gi|14 : TGGTAGTGGACTTATGTATTGCATGC------AATACTCCAGTGTCTTGt
gi|15 : GGTAGGGGACAAATGTATTACTTGC------AATACTCC
gi|16 : atcGATAGGGGACTTATATATTGCTTGC------AATACTTCAGTGACTTgccgttt
gi|17 : GGTAGGGTACTTATACATTGCTTGC------AATACTCTAGTGTCT
gi|18 : GTATGGGACTTTTGTATTGCTTGC------AATACTCCAGTGTCTTa
gi|19 : TGGTTGTGGATTTATGTATTGCTTGC------AATACT-CAGT
gi|20 : aacACTTATATATTGCTTGC------AATACTTCAGTGTCATG
gi|21 : aGGTAAGGGACTTATGTATTGCTTGC------AATACTtt
gi|22 : TGGTAGGGGACTTATATATTGCTTGC------AATACTCCAtgactg
gi|23 : AGGGGACTTATGTATTGCTTGT------AATACTCCA
gi|4 : gGTAGGGGACTTATTTACTGCTTGC------AGTACTCTAGTGTCTTGt
gi|5 : aagcaGTAGGGGACTAATGTATTACT---------AATATTACACTGTCTTGttta
gi|6 : gcaaaccaTGGTAGAGGATTTCTGTATATCTTGC------TGTACTCCAGTGTCTTttta
gi|7 : taaacGGACTTGTGTATTGCTTGC------AATGCTCCAGTGTCCTG
gi|8 : aaccaTGGTAGAGGACTTATGTATAGCTTGC------AATACTCCAGTTTCTTttgc
gi|9 : aacGGTAGGGGACTTATGTATTGCTTGC------CATACTCCACTGTCT
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqCons : ******
originalCons : TGGTAGGGGACTTATGTATTGCTTGC------AATACTCCAGTGTCTTG
finalCons : TGGTAGGGGACTTATGTATTGCTTGC------AATACTCCAGTGTCTTG
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): GTAGGGGTGTTACATGTATGTATGGCTTGCAACTCTGAAAGCACTGGGTCTT
Unaligned ( gi|3 ): GGTAGGGGTGTTACATGTATGTATGGCTTGCAACTCTGAAAGCACTGGGTCT
Alignments
lowQualScore : 555555
lowQualScore : ......
lowQualScore : 555555
consensus : TGGTAGGGGACTTATGTATTGCTTGC------AATACTCCAGTGTCTTG
Reference ( family-110 ) : TGGTAGGGGACTTATGTATTGCTTGC------AATACTCCAGTGTCTTG
gi|1 : AGGGGACATATGTATTGCGTGCAATACTAATACTTCAGTGTCTTG
gi|10 : accagtaGTAGATGACTTATGTATTGCTTGC------AATACTCAGATGTCttcaa
gi|11 : aaccaGTAGGGGACTTAGGTATTGCTTGT------GAAATTCCAGTGTCTTGa
gi|12 : caTGGTAGGAAACTTATGCATTTCTAGC------AATACTCTAGTGTCTTGt
gi|13 : TGGTAGGAGACTTGTGTATTACTTGC------ATTACTCCTATGTCTTGt
gi|14 : TGGTAGTGGACTTATGTATTGCATGC------AATACTCCAGTGTCTTGt
gi|15 : GGTAGGGGACAAATGTATTACTTGC------AATACTCC
gi|16 : atcGATAGGGGACTTATATATTGCTTGC------AATACTTCAGTGACTTgccgttt
gi|17 : GGTAGGGTACTTATACATTGCTTGC------AATACTCTAGTGTCT
gi|18 : GTATGGGACTTTTGTATTGCTTGC------AATACTCCAGTGTCTTa
gi|19 : TGGTTGTGGATTTATGTATTGCTTGC------AATACT-CAGT
gi|20 : aacACTTATATATTGCTTGC------AATACTTCAGTGTCATG
gi|21 : aGGTAAGGGACTTATGTATTGCTTGC------AATACTtt
gi|22 : TGGTAGGGGACTTATATATTGCTTGC------AATACTCCAtgactg
gi|23 : AGGGGACTTATGTATTGCTTGT------AATACTCCA
gi|4 : gGTAGGGGACTTATTTACTGCTTGC------AGTACTCTAGTGTCTTGt
gi|5 : aagcaGTAGGGGACTAATGTATTACT---------AATATTACACTGTCTTGttta
gi|6 : gcaaaccaTGGTAGAGGATTTCTGTATATCTTGC------TGTACTCCAGTGTCTTttta
gi|7 : taaacGGACTTGTGTATTGCTTGC------AATGCTCCAGTGTCCTG
gi|8 : aaccaTGGTAGAGGACTTATGTATAGCTTGC------AATACTCCAGTTTCTTttgc
gi|9 : aacGGTAGGGGACTTATGTATTGCTTGC------CATACTCCACTGTCT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): GTAGGGGTGTTACATGTATGTATGGCTTGCAACTCTGAAAGCACTGGGTCTT
Unaligned ( gi|3 ): GGTAGGGGTGTTACATGTATGTATGGCTTGCAACTCTGAAAGCACTGGGTCT