lowQualScore : 1111111111111111111111111111111111111111111
lowQualScore : 11111 4444 1 1111111 55555555555555555555555555555555555555555555555555555 11 1 0000000000000000000000000000000000000000000 9999999999999999999999999999999999999999999999999999999999999999999999 2222 22222 222 2
lowQualScore : 44444 5555 3 6 0 6 1111111 7777 88888888888888888888888888888888888888888888888888888 3 7 22 1 4 4 4 2222222222222222222222222222222222222222222 6 2 3 66 2 66 5 2222222222222222222222222222222222222222222222222222222222222222222222 4 2222 5 33 0 33333 888 2
lowQualScore : ..... .... . . . . ....... .... ..................................................... . . .. . . . . ........................................... . . . .. . .. . ...................................................................... . .... . .. . ..... ... .
lowQualScore : 00000 9999 6 8 5 3 6666666 1111 44444444444444444444444444444444444444444444444444444 6 3 11 1 4 5 0 3333333333333333333333333333333333333333333 0 0 6 99 0 99 0 5555555555555555555555555555555555555555555555555555555555555555555555 2 2222 7 77 7 33333 222 8
consensus : AAAAA---AATTGCTTGTTTG-CCACTTCCGACCCATACCATTTAGGGGTGG----GTAGGT----AGGT-----------A-------AATTA---------------A---TTT----AT-T-TTTTTTN-TAATCAATCAGAGAATCTTTTT--ACCGCACCTNAAGGATG------CG-GACTACGAA-TC-G-CAGAGAAAGGACATGTAATGACCGA--GAATATTTTGAAT--GA-AC-----AAC--AT-------------TTTTTTTTCT----------------------GACC-----GG--CGGGATTGTTTTGGGTCAG-CNTGAAGCGGCAAACAAACAATATTTTN-AATTTAGGC
Reference ( gi|2 ) : AAAAA---GATTGC--ATTTG-CCACATCTGACCCATACCATTTAGGAGTGG----GCAGGT----AGTT-----------A-------AATTA---------------A---TTT----AT-T-TTTTTTA-TAATCATTTAGAGAACCTTTTTTCAC-ACACCTCCAGGATA------CG-GACTACGAG-TC-A-CAAAGAAAGGACATGCAATGACTGA--GAACATTTTAAAT--GA-AC-----AAC--AT-------------TTTTTTTTCT----------------------GACT-----AG--CAGGATTGTCATGGGTCAG-CTTGAAGTAGTATACAAACAATATTTTT--ATTAAGGC
gi|8 : AAAAA---G--TGCTTGTTTG-CCACTTCCGACTCATACCATTTAGGGGTGG----GTAGGT----AGGT-----------A-------GGTAA---------------A---TTC----TT-T-TTCTTTT-TTTTTTTTTTGAGAATCTTTTT
gi|14 : ccacccttAAAAATTTGTTTG----TTTG-CCAATTCCGAACCATGCCGTTTAGTGGTGG----GTAGGT----AGGT-----------A-------cagggacatgttacgacctagaatattttaaatgaacaccaaaaaaagataaaacaaaaagtcctgaaccggcgggattgttt
gi|3 : gaccacccctAATA---AATTGCTTGTTTG-CCACTTCTGACC------ATTTAGGGGTGG----GTGGGT----GGGTGGGTAGGTAGGA-------AAGTA---------------G---GTTGGTAAT-T-TTTTT---TAATGAATCAGAAAATCTTTTTtgtccatt
gi|5 : gccacccttAAAA---AATTGCTTGTTTG-CCACTTCCAACTCATACCATTTAGGGGTAGTTTTGTTGGT----ATTT-----------T-------TTTTA---------------ATTTTTT----TT-T-TTTTTTG-TTTTCAATCAGAGAATCTTTTaaggacatgtaatgacagagaatattttaaataaacaacaaataagacacccaatatatttttcctgaacggtgggaatgttttggtcagccggaagtggcaaacaaacaaatttttgaattaggcct
gi|9 : acccttAATA---AATTGC--TTTTTTCCACTTCCGACTCGTACCATTTAGGGGTAG----GTAGGT----AGGT-----------A-------AATTC---------------T---TTT----TC-T-TTTTTTT-TAATTAATCAGAGaaaggatatgtaatggccgagaatattttgattttgaatgaatttttttataaaaaaaaaataggattgttttgggtcagcaggaagtggaagacaaacaatattttaatttaggcc
gi|7 : tcaggccacctttAAAA---AATTG----TTTT-CCACTTCCGAGCCATACCACTTAGGGTTGG----AAAGG--------T-----------A-------AATT--------------------CTG----GT-TATTTATTA-T--TCAATCAGAGcagcaaacaaacaatttaagttacttatataatcagatgatgaatgtttgctcttttacctt
gi|4 : gggccacaattgATTGCTTGTTTA-CCACTTCCGACTCGTACCATTAACAGGTGG----GTA-GT----AGGT-----------A-------AATTATTTTTTTTTTTATTTA---TCT----AT-T-TTGTTTG-TAACCAATCAGAGAATCTTTTtataattttatcttttttaaagaactattttagatgaacataaaaaaaaatttatttttcaatttgtttttctggatccccaaaatattttccccgccccc
gi|6 : ttaTTTG-CCACTTTTGACTCATACCATTTAGGGGTGG----A------------T-----------A-------AATTC---------------C---TTT-----T-T-TTTTTTT-TAATCAATCAGAGAATCTTTTTaaagaacatgtaatgaccgagaatattttaaatgacacctaaaaaaattttcctgaccagcgggattgttttcagtcagcctgaagcggcaaacaaatatttttttttaatttaggcccg
gi|11 : ttgTTTG-CTACTTCTGACCGTTACTATT----AATGG----GAAGGTTACGAGT--------------------AGGTC---------------A---TTT-----T-T-TTTTTTA-CAATCAATCAGAGATTCTTCTT--ACTGCA---CCAAAGTA------TGCGACTATTAG-TCGG-CAGAGAAATGACAaagtacatgtaatgaccggaaatatttttaatgaaatttttttttttaaaccttccccctcccccaaaagacttgaccggcaggattgtttcgagtccgcgtcaaacaaacaatattttgatttagtcctg
gi|10 : ttgtagacaaccaattTTTG-CCATCTCCAACCGATACCATTTAGGACAGG----GATGGT----AGaacattagtttga
gi|15 : acacatacttgaacctcccttaaataactgtttgG-CCACTCTTAACTCATTCCATTTACGGATGG----ATAGGT----AGGT-----------AGGGATATAATTATAT------------A---TTC----AT-T-TTTattggtattgctgcgtccaaaggatgcagaatcggcagagaaaggacttgtaatgactgagaacattttagacaaacaactacaaat
gi|1 : CCA-ATCATTCAGG----G----GCTGGT----AGGT-----------A-------AATT--------------------TTT----ATATATTTTTTG-CAATCAATCTTAGAATCTCTTT--ACTGCACCTAAAGGATG------CA-GACT--GAA-TA-GGCAGAGAACGGACATGCAA---CTGAAGGATTATTTTGAAT--GA-AC-----AAC--Aggttt
gi|12 : ttcttaaaatagttttttttccaatt-----------A-------AATTA---------------------T----AT-T-TTTTTTCCTAATAAATCAGA---CATCTTATAACCATACCTGAAGGATATGAATGCG-AACTATGAAATC-TTCTGACAAAGGACATGCAATGACCGA--GAACATGTTGAAT--GA-Aaaaagaatattgggggagggtgtcaaaaaagtttcagaccagcacgattgtcaatccgacttatactgcaaacaaataatattttaat
gi|10 : AGGATG------CA-GAAT-CGG-------CAGAGAAAGGACTTGTAATGACTGA--GAACATTTTAGAC--AA-AC-----AAC--aa
gi|4 : acacatacttgaacctcccttaaataactgtttgtttgccatctccaaccgataccatttaggacagggatggtagattggtattgctgcgtccaaAAAGAACATGTAATGACCGA--GAATATTTTAAAT--GACACCTAAAAAA--AT-------------TTTC----CT----------------------GACC-----AG--CGGGATTGTTTTCAGTCAG-CCTGAAGCGGCAAACAAATATTTTTTTTTAATTTAGGCtacaaat
gi|5 : ttaattgcttgtttaccacttccgactcgtaccattaacaggtgggtagtaggtaaattatttttttttttatttatctattttgtttgtaaccaatcagagaatcttttAAAGGATATGTAATGGCCGA--GAATATTTTGATTTTGA-AT-----GA---AT-------------TTTTTTATAA----------------------AAAA-----AAAATAGGATTGTTTTGGGTCAG-CAGGAAGTGGAAGACAAACAATATTTTA--ATTTAGGCccg
gi|3 : acccttaaaaaattgcttgtttgccacttccaactcataccatttaggggtagttttgttggtattttttttaatttttttttttttttgttttcaatcagagaatcttttAAGGACATGTAATGACAGA--GAATATTTTAAAT--AA-AC-----AACAAATAAGACACCCAATATATTTTTCCT----------------------GAAC-----GG--TGGGAATGTT-TTGGTCAG-CCGGAAGTGGCAAACAAACAA-ATTTTTGAATT-AGGCc
gi|8 : gccacccttaataaattgcttgtttgccacttctgaccatttaggggtgggtgggtgggtgggtaggtaggaaagtaggttggtaattttttttaatgaatcagaaaatctttttAGGGACATGTTACGACCTA--GAATATTTTAAAT--GA-AC-----ACC--Act
gi|6 : ccacccttaaaaagtgcttgtttgccacttccgactcataccatttaggggtgggtaggtaggtaggtaaattctttttcttttttttttttttgagaatctttttcAAGTACATGTAATGACCGG--AAATATTTTTAAT--GA-A-----------AT-------------TTTTTTTTTTAAACCTTCCCCCTCCCCCAAAAGACTTGACCGG--CAGGATTGTTTCGAGTCCG-CGTCAA-------ACAAACAATATTTTG--ATTTAGaaaaaagataaaacaaaaagtcctgaaccggcgggattgttt
gi|1 : ttgtttgccacttttgactcataccatttaggggtggataaattcctttttttttttttaatcaatcagagaatctttttTTTCA----------------------GACC-----AG--CACGATTGTCA---ATCCGACTTATACT-GCAAACAAATAATATTTTA--ATtcctg
gi|13 : ttcttaaaatagttttttttccaattccaatcattcaggggctggtaggtaaatttttatatattttttgcaatcaatcttagaatctctttactgcacctaaaggatgcagactgaataggcagagaacggacatgcaactgaaggattattttgaatgaacaacaaaaagaatattgggggagggtgtcaaaaaagTTTCT----------------------GATC-----GA--C-GGATTGGTGTGGGTCGG-CTTTGAGCAGCAAACAAACAATATTT
gi|17 : ggggagggtagtcaataaaagGGTCAT-CTGGAAGTGGCAAACAAACAATATTTcaa
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|16 ): AGGATTGTTGTGGATCAACAGGAAGCGACTAACAAAAAATGAACAAAATTTTGATTTAGGC
Alignments
lowQualScore : 2222222222222222222222222222 3333333333333 11111 11111111111 4444444444444444444444444 22222222222 44444444444444444444444444444444444 1111111 11
lowQualScore : 1 6666 5555555555555555555555555555 555 9999999 5555555555555 44444 77 3 44 666 33333333333 9999999999999999999999999 0 66 4 444 44 2 8 11111111111 8 0 88888888888888888888888888888888888 5 3 1 333 4 4444444 44
lowQualScore : . .... ............................ ... ....... ............. ..... .. . .. ... ........... ......................... . .. . ... .. . . ........... . . ................................... . . . ... . ....... ..
lowQualScore : 5 5555 8888888888888888888888888888 000 3333333 4444444444444 88888 99 3 66 444 55555555555 3333333333333333333333333 8 11 4 111 88 7 9 22222222222 0 8 77777777777777777777777777777777777 0 3 1 888 4 4444444 33
consensus : AAAAAAATTGCTTGTTTGCCACTTCCGACCCATACCATTTAG----GGGTG--------G----GT---AG--------GTAGGT---A-------AATTA------------TTTNT---T--TTT-TTTT-TAA---TCAATCAGAGAATCTTTTTAC-CGCACCTAAAGGAT------GCGGACTATGAA-T-C-G-CAGAGAAAGGACATGT--AA-TGACCGAGAA-CATTTTGAATGA-AC-----AAC--AT-TTTTTT---------TTC------------------T----GA-CCGGCGGGATTGTTTTGGGTCAGCNTGAAGCGGCAAACAAACA-AT-------ATTTTNAATTTAGGC
Reference ( family-699 ) : AAAAAAATTGCTTGTTTGCCACTTCCGACCCATACCATTTAG----GGGTG--------G----GT---AG--------GTAGGT---A-------AATTA-----------ATTTAT---T--TTT-TTTN-TAA---TCAATCAGAGAATCTTTTTAC-CGCACCTNAAGGAT------GCGGACTACGAA-T-C-G-CAGAGAAAGGACATGT--AA-TGACCGAGAA-TATTTTGAATGA-AC-----AAC--AT-TTTTTT---------TTC------------------T----GA-CCGGCGGGATTGTTTTGGGTCAGCNTGAAGCGGCAAACAAACA-AT-------ATTTTNAATTTAGGC
gi|1 : AAAATAGTTTTTTTTCCAATTCCAATC------ATTCAG----GGGC---------------T----G--------GTAGGT---A-------AATT-------------TTTATA--TA-TTT-TTTG-CAA---TCAATCTTAGAATCTCTTTAC-TGCACCTAAAGGAT------GCAGACT--GAA-TAG-G-CAGAGAACGGACATGC--AACTGA---AGGATTATTTTGAATGA-AC-----AAC--A
gi|1 : ttcttT---------TTC------------------A----GA-CCAGCACGATTGTC---AATCCGACTTATACTGCAAACAAATA-AT-------ATTTTAAaaaagaatattgggggagggtgtcaaaaaagtttcagaccagcacgattgtcaatccgacttatactgcaaacaaataatattttaat
gi|10 : ttcttaaaatagttttttttccaattccaatcattcaggggctggtaggtaaatttttatatattttttgcaatcaatcttagaatctctttactgcacctaaaggatgcagactgaataggcagagaacggacatgcaactgaaggattattttgaatgaacaacaaaaagaatattgggggagggtgtcaaaaaagAAATAACTGTTTGTTTGCCATCTCCAACCGATACCATTTAGGACAGGGAT--------G----GT---AG--------ATTGGT---A-------t
gi|10 : acacatacttgaacctcccttTTGC-TGCGTCCAAAGGAT------GCAGA------A-T-C-GGCAGAGAAAGGACTTGT--AA-TGACTGAGAA-CATTTTAGACAA-AC-----AAC--ttgctgcgtccaaaggatgcagaatcggcagagaaaggacttgtaatgactgagaacattttagacaaacaactacaaat
gi|11 : acacatacttgaacctcccttaaataactgtttgtttgccatctccaaccgataccatttaggacagggatggtagattggtaTTTGCTACTTCTGACCGTTACTATTAAT----GGGAA--------G----GTTACGA--------GTAGGT---C-------A----------------TTT-T---T--TTT-TTTA-CAA---TCAATCAGAGATTCTTCTTAC-TGCACC-AAAGTAT------GC-GACTATTAG-T-CGG-CAGAGAAATGACAtacaaat
gi|12 : ttgtagacaaccaatt---A-------AATTA--------------TAT---T--TTT-TTTCCTAA---TAAATCAGACA-TCTTATAAC-CATACCTGAAGGATATGAATGCGAACTATGAAAT-C-TTCTGACAAAGGACATGC--AA-TGACCGAGAA-CATGTTGAATGA-Aaacattagtttga
gi|13 : T---------TTC------------------T----GA-TCGACGG-ATTGGTGTGGGTCGGCTTTGAGCAGCAAACAAACA-AT-------ATTTCAAaa
gi|14 : ggggagggtagtcaataaaagAAAAATTTGTTTGTTTGCCAATTCCGAACCATGCCGTTTAG----TGGTG--------G----GT---AG--------GTAGGT---A-------
gi|15 : gaccacccctGCCACTCTTAACTCATTCCATTTAC----GGATG--------G----AT---AG--------GTAGGT---AGGGATATAATTATAT--------ATTCAT---T--TTT-tgtccatt
gi|16 : GGATTGTTGTGGATCAACAGGAAGCGACTAACAAAAA-ATGAACAAAATTTTG-ATTTAGGCggttt
gi|17 : aTGTTTTGG-TCATCTGGAAGTGGCAAACAAACA-AT-------A-TTTCAATATAGGC
gi|2 : AAAAAGATTGC--ATTTGCCACATCTGACCCATACCATTTAG----GAGTG--------G----GC---AG--------GTAGTT---A-------AATTA-----------ATTTAT---T--TTT-TTTA-TAA---TCATTTAGAGAACCTTTTTTCACACACCTCCAGGAT------ACGGACTACGAG-T-C-A-CAAAGAAAGGACATGC--AA-TGACTGAGAA-CATTTTAAATGA-AC-----AAC--AT-TTTTTT---------TTC------------------T----GA-CTAGCAGGATTGTCATGGGTCAGCTTGAAGTAGTATACAAACA-AT-------ATTTTT-ATTAAGGCc
gi|3 : AATAAATTGCTTGTTTGCCACTTCTGACC------ATTTAG----GGGTGGGTGGGTGG----GT---GG--------GTAGGTAGGA-------AAGTA-----------GGTTGG---TAATTT-TTTT-TAA---TGAATCAGAAAATCTTTTT-----------AAGGAC------ATGTA--ATGA--------CAGAGA----ATATTTTAAA-TAAAC---AA-CA-----AATAAGAC-----ACCCAATATATTTT---------TCC------------------T----GA-ACGGTGGGAATGTTTT-GGTCAGCCGGAAGTGGCAAACAAACA-A--------ATTTTTGAATTAGGC
gi|4 : gccacccttAATTGCTTGTTTACCACTTCCGACTCGTACCATTAAC----AGGTG--------G----GT---A---------GTAGGT---A-------AATTATTTTTTTTTTTATTTATCTAT--TTTGTTTG-TAA---CCAATCAGAGAATCTTTTct
gi|4 : ttAAAGAACATGT--AA-TGACCGAGAA-TATTTTAAATGACACCTAAAAAA--AT-TTTC-------------C------------------T----GA-CCAGCGGGATTGTTTTCAGTCAGCCTGAAGCGGCAAACAAATATTT-------TTTTTTAATTTAGGCaaagaacatgtaatgaccgagaatattttaaatgacacctaaaaaaattttcctgaccagcgggattgttttcagtcagcctgaagcggcaaacaaatatttttttttaatttaggcccg
gi|5 : ttaattgcttgtttaccacttccgactcgtaccattaacaggtgggtagtaggtaaattatttttttttttatttatctattttgtttgtaaccaatcagagaatcttttAAAAAATTGCTTGTTTGCCACTTCCAACTCATACCATTTAG----GGGTA--------GTTTTGT---TG--------GTATTT---T-------TTTTA-----------ATTTTT---T--TTT-TTTT-TTGTTTTCAATCAGAGAATCTTT-----------TAAAGGAT------ATG---T---AA-T-G-G-CCGAGA----ATATTT-----TG----------ATTTTGAATGA-A---------------TTTTT---------TTA------------------TAAAAAA-AAAATAGGATTGTTTTGGGTCAGCAGGAAGTGGAAGACAAACA-AT-------ATTTT-AATTTAGGCccg
gi|6 : acccttTTGTTTGCCACTTTTGACTCATACCATTTAG----GGGTG-------------------------------GAT---A-------AATTC-----------CTTT-T---T--TTT-TTTT-TAA---TCAATCAGAGAATCTTTTTAc
gi|6 : AAGTACATGT--AA-TGACCGGAAA-TATTTTTAATGA-A-----------AT-TTTTTTTTTTAAACCTTCCCCCTCCCCCAAAAGACTT----GA-CCGGCAGGATTGTTTCGAGTCCGCGT-------CAAACAAACA-AT-------ATTTTG-ATTTAGagtacatgtaatgaccggaaatatttttaatgaaatttttttttttaaaccttccccctcccccaaaagacttgaccggcaggattgtttcgagtccgcgtcaaacaaacaatattttgatttagtcctg
gi|7 : ttgtttgccacttttgactcataccatttaggggtggataaattcctttttttttttttaatcaatcagagaatctttttAAAAAATTG----TTTTCCACTTCCGAGCCATACCACTTAG----GGTTG--------G----A----A-----------AGGT---A-------AAT--------------TCTGG---T--TAT-TTAT-TAT---TCAATCAGAGTATAATTTTAT-Ctcctg
gi|8 : gggccacaattgAAAAAGTGCTTGTTTGCCACTTCCGACTCATACCATTTAG----GGGTG--------G----GT---AGGTAGGTAG----GT---A-------AATTC-----------TTTTTC---T--TTT-TTTT-T-----TT--TTTGAGAATCTTTTTttttttaaagaactattttagatgaacataaaaaaaaatttatttttcaatttgtttttctggatccccaaaatattttccccgccccc
gi|8 : ccacccttAGGGACATGT--TA-CGACCTAGAA-TATTTTAAATGA-AC-----ACC--Acagggacatgttacgacctagaatattttaaatgaacaccaaaaaaagataaaacaaaaagtcctgaaccggcgggattgttt
gi|8 : ccacccttaaaaagtgcttgtttgccacttccgactcataccatttaggggtgggtaggtaggtaggtaaattctttttcttttttttttttttgagaatctttttcC------------------T----GAACCGGCGGGATTGTTTaaaaaagataaaacaaaaagtcctgaaccggcgggattgttt
gi|9 : ccacccttaaaaagtgcttgtttgccacttccgactcataccatttaggggtgggtaggtaggtaggtaaattctttttcttttttttttttttgagaatctttttcagggacatgttacgacctagaatattttaaatgaacaccaaaaaaagataaaacaaaaagtcAATAAATTGCTTTTTT-CCACTTCCGACTCGTACCATTTAG----GGGTA--------G----GT---AG--------GTAGGT---A-------AATTC-----------TTTTTC---T--TTT-TTTT-TAA---TTAATCAGAG
Alignments
lowQualScore : 11111111 11111111 11 111111 1111111111 44444444444444444444444444 22222222222 44444444444444444444444444444444444 1111111 11
lowQualScore : 1 6666 77777777 555 555 99999999 00 3 222222 0 2 5555555555 33333333333333333333333333 0 0 66 4 444 4 2 8 11111111111 8 0 88888888888888888888888888888888888 5 3 1 333 4 4444444 44
lowQualScore : . .... ........ ... ... ........ .. . ...... . . .......... .......................... . . .. . ... . . . ........... . . ................................... . . . ... . ....... ..
lowQualScore : 5 5555 77777777 444 000 66666666 00 3 111111 6 0 4444444444 22222222222222222222222222 5 8 11 4 111 4 7 9 22222222222 0 8 77777777777777777777777777777777777 0 3 1 888 4 4444444 33
consensus : AAAAAAATTGCTTGTTTGCCACTTCCGACCCATACCATTTAG----GGGTG--------GGTAGGT---AGGT---A--------AATTN-TT-TNT-T--TTTTTTTTAATCAATCAGAGAATCTTTTTAC-CGCACCTAAAGGAT------GCGGACTATG-AA-T-C-G-CAGAGAAAGGACATGT--AA-TGACCGAGAA-CATTTTGAATGA-AC-----AAC--AT-TTTTTT---------TTC------------------T----GA-CCGGCGGGATTGTTTTGGGTCAGCNTGAAGCGGCAAACAAACA-AT-------ATTTTNAATTTAGGC
Reference ( family-699 ) : AAAAAAATTGCTTGTTTGCCACTTCCGACCCATACCATTTAG----GGGTG--------GGTAGGT---AGGT---A--------AATTA-TT-TNT-T--TTTTTTTTAATCAATCAGAGAATCTTTTTAC-CGCACCTAAAGGAT------GCGGACTATG-AA-T-C-G-CAGAGAAAGGACATGT--AA-TGACCGAGAA-CATTTTGAATGA-AC-----AAC--AT-TTTTTT---------TTC------------------T----GA-CCGGCGGGATTGTTTTGGGTCAGCNTGAAGCGGCAAACAAACA-AT-------ATTTTNAATTTAGGC
gi|1 : AAAATAGTTTTTTTTCCAATTCCAATC------ATTCAG----GGGC-----------T-GGT---AGGT---A--------AATTT-TTATAT-A--TTTTTTGCAATCAATCTTAGAATCTCTTTAC-TGCACCTAAAGGAT------GCAGAC--TG-AA-TAG-G-CAGAGAACGGACATGC--AACTGA---AGGATTATTTTGAATGA-AC-----AAC--A
gi|1 : ttcttT---------TTC------------------A----GA-CCAGCACGATTGTC---AATCCGACTTATACTGCAAACAAATA-AT-------ATTTTAAaaaagaatattgggggagggtgtcaaaaaagtttcagaccagcacgattgtcaatccgacttatactgcaaacaaataatattttaat
gi|10 : ttcttaaaatagttttttttccaattccaatcattcaggggctggtaggtaaatttttatatattttttgcaatcaatcttagaatctctttactgcacctaaaggatgcagactgaataggcagagaacggacatgcaactgaaggattattttgaatgaacaacaaaaagaatattgggggagggtgtcaaaaaagAAATAACTGTTTGTTTGCCATCTCCAACCGATACCATTTAGGACAGGGAT--------GGTAGAT---TGGT---A--------t
gi|10 : acacatacttgaacctcccttTTGC-TGCGTCCAAAGGAT------GCAGA-------A-T-C-GGCAGAGAAAGGACTTGT--AA-TGACTGAGAA-CATTTTAGACAA-AC-----AAC--ttgctgcgtccaaaggatgcagaatcggcagagaaaggacttgtaatgactgagaacattttagacaaacaactacaaat
gi|11 : acacatacttgaacctcccttaaataactgtttgtttgccatctccaaccgataccatttaggacagggatggtagattggtaTTTGCTACTTCTGACCGTTACTATTAA--------TG--------GGAAGGTTACGAGT---A--------GGTCA-TT-T-T-T--TTTTTTACAATCAATCAGAGATTCTTCTTAC-TGCACC-AAAGTAT------GC-GACTATT-AG-T-CGG-CAGAGAAATGACAtacaaat
gi|12 : ttgtagacaaccaatt---A--------AATTA-TA-T-T-T--TTTTTCCTAATAAATCAGACA-TCTTATAAC-CATACCTGAAGGATATGAATGCGAACTATG-AAAT-C-TTCTGACAAAGGACATGC--AA-TGACCGAGAA-CATGTTGAATGA-Aaacattagtttga
gi|13 : T---------TTC------------------T----GA-TCGACGG-ATTGGTGTGGGTCGGCTTTGAGCAGCAAACAAACA-AT-------ATTTCAAaa
gi|14 : ggggagggtagtcaataaaagAAAAATTTGTTTGTTTGCCAATTCCGAACCATGCCGTTTAG----TGGTG--------GGTAGGT---AGGT---A--------
gi|15 : gaccacccctGCCACTCTTAACTCATTCCATTTAC----GGATG--------GATAGGT---AGGT---AGGGATAT-AATTA-TA-TAT-T--CATTTTTtgtccatt
gi|16 : GGATTGTTGTGGATCAACAGGAAGCGACTAACAAAAA-ATGAACAAAATTTTG-ATTTAGGCggttt
gi|17 : aTGTTTTGG-TCATCTGGAAGTGGCAAACAAACA-AT-------A-TTTCAATATAGGC
gi|2 : AAAAAGATTGC--ATTTGCCACATCTGACCCATACCATTTAG----GAGTG--------GGCAGGT---AGTT---A--------AATTAATT-TAT-T--TTTTTTATAATCATTTAGAGAACCTTTTTTCACACACCTCCAGGAT------ACGGACTACG-AG-T-C-A-CAAAGAAAGGACATGC--AA-TGACTGAGAA-CATTTTAAATGA-AC-----AAC--AT-TTTTTT---------TTC------------------T----GA-CTAGCAGGATTGTCATGGGTCAGCTTGAAGTAGTATACAAACA-AT-------ATTTTT-ATTAAGGCc
gi|3 : AATAAATTGCTTGTTTGCCACTTCTGACC------ATTTAG----GGGTGGGTGGGTGGGTGGGT---AGGTAGGA--------AAGTAGGT-TGG-TAATTTTTTTTAATGAATCAGAAAATCTTTTT-----------AAGGAC------ATGTA--ATG-A--------CAGAGA----ATATTTTAAA-TAAAC---AA-CA-----AATAAGAC-----ACCCAATATATTTT---------TCC------------------T----GA-ACGGTGGGAATGTTTT-GGTCAGCCGGAAGTGGCAAACAAACA-A--------ATTTTTGAATTAGGC
gi|4 : gccacccttAATTGCTTGTTTACCACTTCCGACTCGTACCATTAAC----AGGTG--------GGTAG-T---AGGT---A--------AATTA-TT-T-------TTTTTTTTATTTATCT----ATTTTGTT---TGTAACCAA----T-------CAGA----G-AA-T-C-T-TTTA--AAGAACATGT--AA-TGACCGAGAA-TATTTTAAATGACACCTAAAAAA--AT-TTTC-------------C------------------T----GA-CCAGCGGGATTGTTTTCAGTCAGCCTGAAGCGGCAAACAAATATTT-------TTTTTTAATTTAGGCct
gi|5 : ttAAAAAATTGCTTGTTTGCCACTTCCAACTCATACCATTTAG----GGGTA--------GTTTTGT---TGGT---ATTTTTTTTAATTT-TT-TTT-T--TTTTTTGTTTTCAATCAGAGAATCTTT-----------TAAAGGA-------------TATGTAA-T-G-G-CCGAGA----ATATTT-----TG----------ATTTTGAATGA-A---------------TTTTT---------TTA------------------TAAAAAA-AAAATAGGATTGTTTTGGGTCAGCAGGAAGTGGAAGACAAACA-AT-------ATTTT-AATTTAGGCccg
gi|6 : acccttTTGTTTGCCACTTTTGACTCATACCATTTAG----GGGTG--------GATA----------------------AATTC-CT-TTT-T--TTTTTTTTAATCAATCAGAGAATCTTTTTAc
gi|6 : AAGTACATGT--AA-TGACCGGAAA-TATTTTTAATGA-A-----------AT-TTTTTTTTTTAAACCTTCCCCCTCCCCCAAAAGACTT----GA-CCGGCAGGATTGTTTCGAGTCCGCGT-------CAAACAAACA-AT-------ATTTTG-ATTTAGagtacatgtaatgaccggaaatatttttaatgaaatttttttttttaaaccttccccctcccccaaaagacttgaccggcaggattgtttcgagtccgcgtcaaacaaacaatattttgatttagtcctg
gi|7 : ttgtttgccacttttgactcataccatttaggggtggataaattcctttttttttttttaatcaatcagagaatctttttAAAAAATTG----TTTTCCACTTCCGAGCCATACCACTTAG----GGTTG--------GA-A------AGGT---A--------AAT---TC-TGG-T--TATTTATTATTCAATCAGAGTATAATTTTAT-Ctcctg
gi|8 : gggccacaattgAAAAAGTGCTTGTTTGCCACTTCCGACTCATACCATTTAG----GGGTGGGTA----GGTAGGT---AGGT---A--------AATTC-TT-TTT-C--TTTTTTTTTTT---TTTGAGAATCTTTTTttttttaaagaactattttagatgaacataaaaaaaaatttatttttcaatttgtttttctggatccccaaaatattttccccgccccc
gi|8 : ccacccttAGGGACATGT--TA-CGACCTAGAA-TATTTTAAATGA-AC-----ACC--Acagggacatgttacgacctagaatattttaaatgaacaccaaaaaaagataaaacaaaaagtcctgaaccggcgggattgttt
gi|8 : ccacccttaaaaagtgcttgtttgccacttccgactcataccatttaggggtgggtaggtaggtaggtaaattctttttcttttttttttttttgagaatctttttcC------------------T----GAACCGGCGGGATTGTTTaaaaaagataaaacaaaaagtcctgaaccggcgggattgttt
gi|9 : ccacccttaaaaagtgcttgtttgccacttccgactcataccatttaggggtgggtaggtaggtaggtaaattctttttcttttttttttttttgagaatctttttcagggacatgttacgacctagaatattttaaatgaacaccaaaaaaagataaaacaaaaagtcAATAAATTGCTTTTTT-CCACTTCCGACTCGTACCATTTAG----GGGTA--------GGTAGGT---AGGT---A--------AATTC-TT-TTTCT--TTTTTTTTAATTAATCAGAG
Alignments
lowQualScore : 11111111 2222222222222 1111111111 44444444444444444444444444 22222222222 44444444444444444444444444444444444 1111111 11
lowQualScore : 1 6666 77777777 555 0 0000000000000 66666 888888 0 2 5555555555 33333333333333333333333333 0 0 66 4 444 4 2 8 11111111111 8 0 88888888888888888888888888888888888 5 3 1 333 4 4444444 44
lowQualScore : . .... ........ ... . ............. ..... ...... . . .......... .......................... . . .. . ... . . . ........... . . ................................... . . . ... . ....... ..
lowQualScore : 5 5555 77777777 444 8 1111111111111 55555 888888 6 0 4444444444 22222222222222222222222222 5 8 11 4 111 4 7 9 22222222222 0 8 77777777777777777777777777777777777 0 3 1 888 4 4444444 33
consensus : AAAAAAATTGCTTGTTTGCCACTTCCGACCCATACCATTTAG----GGGTG--------GGT---AGGTAGGT----A--------AATTN-TT-TNT-T--TTTTTTTTAATCAATCAGAGAATCTTTTTAC-CGCACCTAAAGGAT------GCGGACTATG-AA-T-C-G-CAGAGAAAGGACATGT--AA-TGACCGAGAA-CATTTTGAATGA-AC-----AAC--AT-TTTTTT---------TTC------------------T----GA-CCGGCGGGATTGTTTTGGGTCAGCNTGAAGCGGCAAACAAACA-AT-------ATTTTNAATTTAGGC
Reference ( family-699 ) : AAAAAAATTGCTTGTTTGCCACTTCCGACCCATACCATTTAG----GGGTG--------GGT---AGGTAGGT----A--------AATTN-TT-TNT-T--TTTTTTTTAATCAATCAGAGAATCTTTTTAC-CGCACCTAAAGGAT------GCGGACTATG-AA-T-C-G-CAGAGAAAGGACATGT--AA-TGACCGAGAA-CATTTTGAATGA-AC-----AAC--AT-TTTTTT---------TTC------------------T----GA-CCGGCGGGATTGTTTTGGGTCAGCNTGAAGCGGCAAACAAACA-AT-------ATTTTNAATTTAGGC
gi|1 : AAAATAGTTTTTTTTCCAATTCCAATC------ATTCAG----GGGC-----------T----GGTAGGT----A--------AATTT-TTATAT-A--TTTTTTGCAATCAATCTTAGAATCTCTTTAC-TGCACCTAAAGGAT------GCAGAC--TG-AA-TAG-G-CAGAGAACGGACATGC--AACTGA---AGGATTATTTTGAATGA-AC-----AAC--A
gi|1 : ttcttT---------TTC------------------A----GA-CCAGCACGATTGTC---AATCCGACTTATACTGCAAACAAATA-AT-------ATTTTAAaaaagaatattgggggagggtgtcaaaaaagtttcagaccagcacgattgtcaatccgacttatactgcaaacaaataatattttaat
gi|10 : ttcttaaaatagttttttttccaattccaatcattcaggggctggtaggtaaatttttatatattttttgcaatcaatcttagaatctctttactgcacctaaaggatgcagactgaataggcagagaacggacatgcaactgaaggattattttgaatgaacaacaaaaagaatattgggggagggtgtcaaaaaagAAATAACTGTTTGTTTGCCATCTCCAACCGATACCATTTAGGACAGGGAT--------GGT---AGATTGGT----A--------t
gi|10 : acacatacttgaacctcccttTTGC-TGCGTCCAAAGGAT------GCAGA-------A-T-C-GGCAGAGAAAGGACTTGT--AA-TGACTGAGAA-CATTTTAGACAA-AC-----AAC--ttgctgcgtccaaaggatgcagaatcggcagagaaaggacttgtaatgactgagaacattttagacaaacaactacaaat
gi|11 : acacatacttgaacctcccttaaataactgtttgtttgccatctccaaccgataccatttaggacagggatggtagattggtaTTTGCTACTTCTGACCGTTACTATTAAT----GGGAA--------GGTTACGAGTAGGT----C--------A------T-TTT-T--TTTTTTACAATCAATCAGAGATTCTTCTTAC-TGCACC-AAAGTAT------GC-GACTATT-AG-T-CGG-CAGAGAAATGACAtacaaat
gi|12 : ttgtagacaaccaatt----A--------AATTA-TA-T-T-T--TTTTTCCTAATAAATCAGACA-TCTTATAAC-CATACCTGAAGGATATGAATGCGAACTATG-AAAT-C-TTCTGACAAAGGACATGC--AA-TGACCGAGAA-CATGTTGAATGA-Aaacattagtttga
gi|13 : T---------TTC------------------T----GA-TCGACGG-ATTGGTGTGGGTCGGCTTTGAGCAGCAAACAAACA-AT-------ATTTCAAaa
gi|14 : ggggagggtagtcaataaaagAAAAATTTGTTTGTTTGCCAATTCCGAACCATGCCGTTTAG----TGGTG--------GGT---AGGTAGGT----A--------
gi|15 : gaccacccctGCCACTCTTAACTCATTCCATTTAC----GGATG--------GAT---AGGTAGGT----AGGGATAT-AATTA-TA-TAT-T--CATTTTTtgtccatt
gi|16 : GGATTGTTGTGGATCAACAGGAAGCGACTAACAAAAA-ATGAACAAAATTTTG-ATTTAGGCggttt
gi|17 : aTGTTTTGG-TCATCTGGAAGTGGCAAACAAACA-AT-------A-TTTCAATATAGGC
gi|2 : AAAAAGATTGC--ATTTGCCACATCTGACCCATACCATTTAG----GAGTG--------GGC---AGGTAGTT----A--------AATTAATT-TAT-T--TTTTTTATAATCATTTAGAGAACCTTTTTTCACACACCTCCAGGAT------ACGGACTACG-AG-T-C-A-CAAAGAAAGGACATGC--AA-TGACTGAGAA-CATTTTAAATGA-AC-----AAC--AT-TTTTTT---------TTC------------------T----GA-CTAGCAGGATTGTCATGGGTCAGCTTGAAGTAGTATACAAACA-AT-------ATTTTT-ATTAAGGCc
gi|3 : AATAAATTGCTTGTTTGCCACTTCTGACC------ATTTAG----GGGTGGGTGGGTGGGT---GGGTAGGTAGGAA--------AGTAG-GT-TGG-TAATTTTTTTTAATGAATCAGAAAATCTTTTT-----------AAGGAC------ATGTA--ATG-A--------CAGAGA----ATATTTTAAA-TAAAC---AA-CA-----AATAAGAC-----ACCCAATATATTTT---------TCC------------------T----GA-ACGGTGGGAATGTTTT-GGTCAGCCGGAAGTGGCAAACAAACA-A--------ATTTTTGAATTAGGC
gi|4 : gccacccttAATTGCTTGTTTACCACTTCCGACTCGTACCATTAAC----AGGTG--------GGT---AG-TAGGT----A--------AATTA-TT-T-------TTTTTTTTATTTATCT----ATTTTGTT---TGTAACCAA----T-------CAGA----G-AA-T-C-T-TTTA--AAGAACATGT--AA-TGACCGAGAA-TATTTTAAATGACACCTAAAAAA--AT-TTTC-------------C------------------T----GA-CCAGCGGGATTGTTTTCAGTCAGCCTGAAGCGGCAAACAAATATTT-------TTTTTTAATTTAGGCct
gi|5 : ttAAAAAATTGCTTGTTTGCCACTTCCAACTCATACCATTTAG----GGGTA--------GTT---TTGTTGGT----ATTTTTTTTAATTT-TT-TTT-T--TTTTTTGTTTTCAATCAGAGAATCTTT-----------TAAAGGA-------------TATGTAA-T-G-G-CCGAGA----ATATTT-----TG----------ATTTTGAATGA-A---------------TTTTT---------TTA------------------TAAAAAA-AAAATAGGATTGTTTTGGGTCAGCAGGAAGTGGAAGACAAACA-AT-------ATTTT-AATTTAGGCccg
gi|6 : acccttTTGTTTGCCACTTTTGACTCATACCATTTAG----GGGTG--------GAT---A--------------------AATTC-CT-TTT-T--TTTTTTTTAATCAATCAGAGAATCTTTTTAc
gi|6 : AAGTACATGT--AA-TGACCGGAAA-TATTTTTAATGA-A-----------AT-TTTTTTTTTTAAACCTTCCCCCTCCCCCAAAAGACTT----GA-CCGGCAGGATTGTTTCGAGTCCGCGT-------CAAACAAACA-AT-------ATTTTG-ATTTAGagtacatgtaatgaccggaaatatttttaatgaaatttttttttttaaaccttccccctcccccaaaagacttgaccggcaggattgtttcgagtccgcgtcaaacaaacaatattttgatttagtcctg
gi|7 : ttgtttgccacttttgactcataccatttaggggtggataaattcctttttttttttttaatcaatcagagaatctttttAAAAAATTG----TTTTCCACTTCCGAGCCATACCACTTAG----GGTTG--------GA----A---AGGT----A--------AATTC----TGG-T--TATTTATTATTCAATCAGAGTATAATTTTAT-Ctcctg
gi|8 : gggccacaattgAAAAAGTGCTTGTTTGCCACTTCCGACTCATACCATTTAG----GGGTGGGTA----GGT---AGGTAGGT----A--------AATTC-TT-TTT-C--TTTTTTTTTTT---TTTGAGAATCTTTTTttttttaaagaactattttagatgaacataaaaaaaaatttatttttcaatttgtttttctggatccccaaaatattttccccgccccc
gi|8 : ccacccttAGGGACATGT--TA-CGACCTAGAA-TATTTTAAATGA-AC-----ACC--Acagggacatgttacgacctagaatattttaaatgaacaccaaaaaaagataaaacaaaaagtcctgaaccggcgggattgttt
gi|8 : ccacccttaaaaagtgcttgtttgccacttccgactcataccatttaggggtgggtaggtaggtaggtaaattctttttcttttttttttttttgagaatctttttcC------------------T----GAACCGGCGGGATTGTTTaaaaaagataaaacaaaaagtcctgaaccggcgggattgttt
gi|9 : ccacccttaaaaagtgcttgtttgccacttccgactcataccatttaggggtgggtaggtaggtaggtaaattctttttcttttttttttttttgagaatctttttcagggacatgttacgacctagaatattttaaatgaacaccaaaaaaagataaaacaaaaagtcAATAAATTGCTTTTTT-CCACTTCCGACTCGTACCATTTAG----GGGTA--------GGT---AGGTAGGT----A--------AATTC-TT-TTTCT--TTTTTTTTAATTAATCAGAG
Alignments
lowQualScore : 11111111 2222222222222 1111111111 44444444444444444444444444 22222222222 44444444444444444444444444444444444 1111111 11
lowQualScore : 1 6666 77777777 555 0 0000000000000 66666 888888 0 2 5555555555 33333333333333333333333333 0 0 66 4 444 4 2 8 11111111111 8 0 88888888888888888888888888888888888 5 3 1 333 4 4444444 44
lowQualScore : . .... ........ ... . ............. ..... ...... . . .......... .......................... . . .. . ... . . . ........... . . ................................... . . . ... . ....... ..
lowQualScore : 5 5555 77777777 444 8 1111111111111 55555 888888 6 0 4444444444 22222222222222222222222222 5 8 11 4 111 4 7 9 22222222222 0 8 77777777777777777777777777777777777 0 3 1 888 4 4444444 33
consensus : AAAAAAATTGCTTGTTTGCCACTTCCGACCCATACCATTTAG----GGGTG--------GGT---AGGTAGGT----A--------AATTN-TT-TNT-T--TTTTTTTTAATCAATCAGAGAATCTTTTTAC-CGCACCTAAAGGAT------GCGGACTATG-AA-T-C-G-CAGAGAAAGGACATGT--AA-TGACCGAGAA-CATTTTGAATGA-AC-----AAC--AT-TTTTTT---------TTC------------------T----GA-CCGGCGGGATTGTTTTGGGTCAGCNTGAAGCGGCAAACAAACA-AT-------ATTTTNAATTTAGGC
Reference ( family-699 ) : AAAAAAATTGCTTGTTTGCCACTTCCGACCCATACCATTTAG----GGGTG--------GGT---AGGTAGGT----A--------AATTN-TT-TNT-T--TTTTTTTTAATCAATCAGAGAATCTTTTTAC-CGCACCTAAAGGAT------GCGGACTATG-AA-T-C-G-CAGAGAAAGGACATGT--AA-TGACCGAGAA-CATTTTGAATGA-AC-----AAC--AT-TTTTTT---------TTC------------------T----GA-CCGGCGGGATTGTTTTGGGTCAGCNTGAAGCGGCAAACAAACA-AT-------ATTTTNAATTTAGGC
gi|1 : AAAATAGTTTTTTTTCCAATTCCAATC------ATTCAG----GGGC-----------T----GGTAGGT----A--------AATTT-TTATAT-A--TTTTTTGCAATCAATCTTAGAATCTCTTTAC-TGCACCTAAAGGAT------GCAGAC--TG-AA-TAG-G-CAGAGAACGGACATGC--AACTGA---AGGATTATTTTGAATGA-AC-----AAC--A
gi|1 : ttcttT---------TTC------------------A----GA-CCAGCACGATTGTC---AATCCGACTTATACTGCAAACAAATA-AT-------ATTTTAAaaaagaatattgggggagggtgtcaaaaaagtttcagaccagcacgattgtcaatccgacttatactgcaaacaaataatattttaat
gi|10 : ttcttaaaatagttttttttccaattccaatcattcaggggctggtaggtaaatttttatatattttttgcaatcaatcttagaatctctttactgcacctaaaggatgcagactgaataggcagagaacggacatgcaactgaaggattattttgaatgaacaacaaaaagaatattgggggagggtgtcaaaaaagAAATAACTGTTTGTTTGCCATCTCCAACCGATACCATTTAGGACAGGGAT--------GGT---AGATTGGT----A--------t
gi|10 : acacatacttgaacctcccttTTGC-TGCGTCCAAAGGAT------GCAGA-------A-T-C-GGCAGAGAAAGGACTTGT--AA-TGACTGAGAA-CATTTTAGACAA-AC-----AAC--ttgctgcgtccaaaggatgcagaatcggcagagaaaggacttgtaatgactgagaacattttagacaaacaactacaaat
gi|11 : acacatacttgaacctcccttaaataactgtttgtttgccatctccaaccgataccatttaggacagggatggtagattggtaTTTGCTACTTCTGACCGTTACTATTAAT----GGGAA--------GGTTACGAGTAGGT----C--------A------T-TTT-T--TTTTTTACAATCAATCAGAGATTCTTCTTAC-TGCACC-AAAGTAT------GC-GACTATT-AG-T-CGG-CAGAGAAATGACAtacaaat
gi|12 : ttgtagacaaccaatt----A--------AATTA-TA-T-T-T--TTTTTCCTAATAAATCAGACA-TCTTATAAC-CATACCTGAAGGATATGAATGCGAACTATG-AAAT-C-TTCTGACAAAGGACATGC--AA-TGACCGAGAA-CATGTTGAATGA-Aaacattagtttga
gi|13 : T---------TTC------------------T----GA-TCGACGG-ATTGGTGTGGGTCGGCTTTGAGCAGCAAACAAACA-AT-------ATTTCAAaa
gi|14 : ggggagggtagtcaataaaagAAAAATTTGTTTGTTTGCCAATTCCGAACCATGCCGTTTAG----TGGTG--------GGT---AGGTAGGT----A--------
gi|15 : gaccacccctGCCACTCTTAACTCATTCCATTTAC----GGATG--------GAT---AGGTAGGT----AGGGATAT-AATTA-TA-TAT-T--CATTTTTtgtccatt
gi|16 : GGATTGTTGTGGATCAACAGGAAGCGACTAACAAAAA-ATGAACAAAATTTTG-ATTTAGGCggttt
gi|17 : aTGTTTTGG-TCATCTGGAAGTGGCAAACAAACA-AT-------A-TTTCAATATAGGC
gi|2 : AAAAAGATTGC--ATTTGCCACATCTGACCCATACCATTTAG----GAGTG--------GGC---AGGTAGTT----A--------AATTAATT-TAT-T--TTTTTTATAATCATTTAGAGAACCTTTTTTCACACACCTCCAGGAT------ACGGACTACG-AG-T-C-A-CAAAGAAAGGACATGC--AA-TGACTGAGAA-CATTTTAAATGA-AC-----AAC--AT-TTTTTT---------TTC------------------T----GA-CTAGCAGGATTGTCATGGGTCAGCTTGAAGTAGTATACAAACA-AT-------ATTTTT-ATTAAGGCc
gi|3 : AATAAATTGCTTGTTTGCCACTTCTGACC------ATTTAG----GGGTGGGTGGGTGGGT---GGGTAGGTAGGAA--------AGTAG-GT-TGG-TAATTTTTTTTAATGAATCAGAAAATCTTTTT-----------AAGGAC------ATGTA--ATG-A--------CAGAGA----ATATTTTAAA-TAAAC---AA-CA-----AATAAGAC-----ACCCAATATATTTT---------TCC------------------T----GA-ACGGTGGGAATGTTTT-GGTCAGCCGGAAGTGGCAAACAAACA-A--------ATTTTTGAATTAGGC
gi|4 : gccacccttAATTGCTTGTTTACCACTTCCGACTCGTACCATTAAC----AGGTG--------GGT---AG-TAGGT----A--------AATTA-TT-T-------TTTTTTTTATTTATCT----ATTTTGTT---TGTAACCAA----T-------CAGA----G-AA-T-C-T-TTTA--AAGAACATGT--AA-TGACCGAGAA-TATTTTAAATGACACCTAAAAAA--AT-TTTC-------------C------------------T----GA-CCAGCGGGATTGTTTTCAGTCAGCCTGAAGCGGCAAACAAATATTT-------TTTTTTAATTTAGGCct
gi|5 : ttAAAAAATTGCTTGTTTGCCACTTCCAACTCATACCATTTAG----GGGTA--------GTT---TTGTTGGT----ATTTTTTTTAATTT-TT-TTT-T--TTTTTTGTTTTCAATCAGAGAATCTTT-----------TAAAGGA-------------TATGTAA-T-G-G-CCGAGA----ATATTT-----TG----------ATTTTGAATGA-A---------------TTTTT---------TTA------------------TAAAAAA-AAAATAGGATTGTTTTGGGTCAGCAGGAAGTGGAAGACAAACA-AT-------ATTTT-AATTTAGGCccg
gi|6 : acccttTTGTTTGCCACTTTTGACTCATACCATTTAG----GGGTG--------GAT---A--------------------AATTC-CT-TTT-T--TTTTTTTTAATCAATCAGAGAATCTTTTTAc
gi|6 : AAGTACATGT--AA-TGACCGGAAA-TATTTTTAATGA-A-----------AT-TTTTTTTTTTAAACCTTCCCCCTCCCCCAAAAGACTT----GA-CCGGCAGGATTGTTTCGAGTCCGCGT-------CAAACAAACA-AT-------ATTTTG-ATTTAGagtacatgtaatgaccggaaatatttttaatgaaatttttttttttaaaccttccccctcccccaaaagacttgaccggcaggattgtttcgagtccgcgtcaaacaaacaatattttgatttagtcctg
gi|7 : ttgtttgccacttttgactcataccatttaggggtggataaattcctttttttttttttaatcaatcagagaatctttttAAAAAATTG----TTTTCCACTTCCGAGCCATACCACTTAG----GGTTG--------GA----A---AGGT----A--------AATTC----TGG-T--TATTTATTATTCAATCAGAGTATAATTTTAT-Ctcctg
gi|8 : gggccacaattgAAAAAGTGCTTGTTTGCCACTTCCGACTCATACCATTTAG----GGGTGGGTA----GGT---AGGTAGGT----A--------AATTC-TT-TTT-C--TTTTTTTTTTT---TTTGAGAATCTTTTTttttttaaagaactattttagatgaacataaaaaaaaatttatttttcaatttgtttttctggatccccaaaatattttccccgccccc
gi|8 : ccacccttAGGGACATGT--TA-CGACCTAGAA-TATTTTAAATGA-AC-----ACC--Acagggacatgttacgacctagaatattttaaatgaacaccaaaaaaagataaaacaaaaagtcctgaaccggcgggattgttt
gi|8 : ccacccttaaaaagtgcttgtttgccacttccgactcataccatttaggggtgggtaggtaggtaggtaaattctttttcttttttttttttttgagaatctttttcC------------------T----GAACCGGCGGGATTGTTTaaaaaagataaaacaaaaagtcctgaaccggcgggattgttt
gi|9 : ccacccttaaaaagtgcttgtttgccacttccgactcataccatttaggggtgggtaggtaggtaggtaaattctttttcttttttttttttttgagaatctttttcagggacatgttacgacctagaatattttaaatgaacaccaaaaaaagataaaacaaaaagtcAATAAATTGCTTTTTT-CCACTTCCGACTCGTACCATTTAG----GGGTA--------GGT---AGGTAGGT----A--------AATTC-TT-TTTCT--TTTTTTTTAATTAATCAGAG
blockSeqs : G GACA GGTGGGTG TAC ATTTTTTTT AATT GGTAA C TCACACACCT ATGAATGCGAACTATGAAATCTT TA . CTG . A G CCTAAAAAA A TTTTAAACCTTCCCCCTCCCCCAAAAGACTT A G G TTT T GAACAAA AA
blockSeqs : G . GGTA . AGGGATAT ATA TTCT A GCTGCGTCC GCGACTATTAGTCGG . . CCG . G C CACCCA . TTATAAAA . G G AGG . . CA
blockSeqs : C . . . AGGAA ATA TTT C ACCATACCT ACGGACTACGAGTCA . . CTG . A . CAAC . TTCT . T G TGG . . TG
blockSeqs : C . . . A GGT ATT G ACTGCACC GCAGAATCGG . . CCG . A . CAAC . TTCT . A G TTG . . TA
blockSeqs : C . . . C ATT ATT T TGTAACC CAGAGAATCT . . CCG . G . CACC TCCT . T C CGG . . G
blockSeqs : C . . . A TTT TTT C T TATGTAATGG . . CCT . T . . CT . T G CTG . . T
blockSeqs : C . . . A CCT TTT C . ATGTAATGA . . AC . A . . . T G AGG . . A
blockSeqs : C . . . A CTT GGT C . . . . . . T . GT . . G
blockSeqs : C . . . A CTT TTC T T
blockSeqs : C . . . A T TT .
blockSeqs : C . . . A C .
blockSeqs : . . . . A
blockSeqs : .
blockSeqCons : NTT** ACGGAATGG***************** CCG G*
originalCons : AAAAAAATTGCTTGTTTGCCACTTCCGACCCATACCATTTAG----GGGTG--------GGT---AGGTAGGT----A--------AATTN-TT-TNT-T--TTTTTTTTAATCAATCAGAGAATCTTTTTAC-CGCACCTAAAGGAT------GCGGACTATG-AA-T-C-G-CAGAGAAAGGACATGT--AA-TGACCGAGAA-CATTTTGAATGA-AC-----AAC--AT-TTTTTT---------TTC------------------T----GA-CCGGCGGGATTGTTTTGGGTCAGCNTGAAGCGGCAAACAAACA-AT-------ATTTTNAATTTAGGC
finalCons : AAAAAAATTGCTTGTTTGCCACTTCCGACCCATACCATTTAG----GGGTG--------GGT---AGGTAGGT----A--------AATTNTT--TNT-T--TTTTTTTTAATCAATCAGAGAATCTTTTTAC-CGCACCTAAAGGATACGGAATGG-----------------CAGAGAAAGGACATGT--AA-TGACCGAGAA-CATTTTGAATGA-AC-----AAC--AT-TTTTTT---------TTC------------------T----GA-CCGGCGGGATTGTTTTGGGTCAGCNTGAAGCGGCAAACAAACA-AT-------ATTTTG-ATTTAGGC
Alignments
lowQualScore : 11111111 2222222222222 888888888888888888888888888888888888888888888888888888888888888888888888 6666666666666666666666666666666666666666666666666666666666666666666 1111111 1111111
lowQualScore : 1 6666 77777777 555 0 0000000000000 66666 4 3 44 0 0 0 666666666666666666666666666666666666666666666666666666666666666666666666 999 4 555 44 3 6666666666666666666666666666666666666666666666666666666666666666666 5555555 3 1 333 66 4444444 1
lowQualScore : . .... ........ ... . ............. ..... . . .. . . . ........................................................................ ... . ... .. . ................................................................... ....... . . ... .. ....... .
lowQualScore : 5 5555 77777777 444 8 1111111111111 55555 2 3 66 6 5 9 555555555555555555555555555555555555555555555555555555555555555555555555 000 0 777 55 0 9999999999999999999999999999999999999999999999999999999999999999999 8888888 3 1 888 11 4444444 1
consensus : AAAAAAATTGCTTGTTTGCCACTTCCGACCCATACCATTTAG----GGGTG--------GGT---AGGTAGGT----A--------AATTN-TT-TNT-T--TTTTTTTTAATCAATCAGAGAATCTTTTTAC-CGCACCTAAAGGAT----ACGN-----A--------AT-GG----CA------GAGAA--------AGGACATGT--AA-TGACCGAGAA-CATTTTAAATG------------------A-AC-----AAC--AT-TTTTTTTTCT----------------------GA-C-----CGGCGGGATTGTTTTGGGTCAGCNTGAAGCGGCAAACAAACA--AT-------ATTTTGATTTAGGC
Reference ( family-699 ) : AAAAAAATTGCTTGTTTGCCACTTCCGACCCATACCATTTAG----GGGTG--------GGT---AGGTAGGT----A--------AATTN-TT-TNT-T--TTTTTTTTAATCAATCAGAGAATCTTTTTAC-CGCACCTAAAGGAT----ACGG-----A--------AT-GG----CA------GAGAA--------AGGACATGT--AA-TGACCGAGAA-CATTTTGAATG------------------A-AC-----AAC--AT-TTTTTTTTCT----------------------GA-C-----CGGCGGGATTGTTTTGGGTCAGCNTGAAGCGGCAAACAAACA--AT-------ATTTTGATTTAGGC
gi|1 : AAAATAGTTTTTTTTCCAATTCCAATC------ATTCAG----GGGC-----------T----GGTAGGT----A--------AATTT-TTATAT-A--TTTTTTGCAATCAATCTTAGAATCTCTTTAC-TGCACCTAAAGGATGCAGACTG-----A--------ATAGG----CA------GAGAA--------CGGACATGC--AACTGA---AGGATTATTTTGAATG------------------A-AC-----AAC--A
gi|1 : ttcttTTTCA----------------------GA-C-----CAGCACGATTGTC---AATCCGACTTATACTGCAAACAAATA--AT-------ATTTTAATaaaagaatattgggggagggtgtcaaaaaagtttcagaccagcacgattgtcaatccgacttatactgcaaacaaataatattttaat
gi|10 : ttcttaaaatagttttttttccaattccaatcattcaggggctggtaggtaaatttttatatattttttgcaatcaatcttagaatctctttactgcacctaaaggatgcagactgaataggcagagaacggacatgcaactgaaggattattttgaatgaacaacaaaaagaatattgggggagggtgtcaaaaaagAAATAACTGTTTGTTTGCCATCTCCAACCGATACCATTTAGGACAGGGAT--------GGT---AGATTGGT----A--------
gi|10 : acacatacttgaacctcccttTTGC-TGCGTCCAAAGGAT----GCAG-----A--------ATCGG----CA------GAGAA--------AGGACTTGT--AA-TGACTGAGAA-CATTTTAGACA------------------A-AC-----AAC--ttgctgcgtccaaaggatgcagaatcggcagagaaaggacttgtaatgactgagaacattttagacaaacaactacaaat
gi|11 : acacatacttgaacctcccttaaataactgtttgtttgccatctccaaccgataccatttaggacagggatggtagattggtaTTTGCTACTTCTGACCGTTACTATTAAT----GGGAA--------GGTTACGAGTAGGT----C--------A------T-TTT-T--TTTTTTACAATCAATCAGAGATTCTTCTTAC-TGCACC-AAAGTAT----GCGACTATTA--------GTCGG----CA------GAGAA--------ATGACAtacaaat
gi|12 : ttgtagacaaccaatt----A--------AATTA-TA-T-T-T--TTTTTCCTAATAAATCAGACA-TCTTATAAC-CATACCTGAAGGAT----ATGA-----ATGCGAACTAT-GA----AATCTTCTGACAA--------AGGACATGC--AA-TGACCGAGAA-CATGTTGAATG------------------A-Aaacattagtttga
gi|13 : TTTCT----------------------GA-T-----CGACGG-ATTGGTGTGGGTCGGCTTTGAGCAGCAAACAAACA--AT-------ATTTaa
gi|14 : ggggagggtagtcaataaaagAAAAATTTGTTTGTTTGCCAATTCCGAACCATGCCGTTTAG----TGGTG--------GGT---AGGTAGGT----A--------caa
gi|15 : gaccacccctGCCACTCTTAACTCATTCCATTTAC----GGATG--------GAT---AGGTAGGT----AGGGATAT-AATTA-TA-TAT-T--CATTTTTtgtccatt
gi|16 : GGATTGTTGTGGATCAACAGGAAGCGACTAACAAAAA--ATGAACAAAATTTTGATTTAGGCggttt
gi|17 : aTGTTTTGG-TCATCTGGAAGTGGCAAACAAACA--AT-------ATTTCAATATAGGC
gi|2 : AAAAAGATTGC--ATTTGCCACATCTGACCCATACCATTTAG----GAGTG--------GGC---AGGTAGTT----A--------AATTAATT-TAT-T--TTTTTTATAATCATTTAGAGAACCTTTTTTCACACACCTCCAGGAT----ACGG-----ACT------AC-GAGTCACA------AAGAA--------AGGACATGC--AA-TGACTGAGAA-CATTTTAAATG------------------A-AC-----AAC--AT-TTTTTTTTCT----------------------GA-C-----TAGCAGGATTGTCATGGGTCAGCTTGAAGTAGTATACAAACA--AT-------ATTTTTATTAAGGCc
gi|3 : AATAAATTGCTTGTTTGCCACTTCTGACC------ATTTAG----GGGTGGGTGGGTGGGT---GGGTAGGTAGGAA--------AGTAG-GT-TGG-TAATTTTTTTTAATGAATCAGAAAATCTTTTT-----------AAGGAC----ATGT-----A--------AT-GA----CA------GAGA------------ATATTTTAAA-TAAAC---AA-CA-----AATA------------------AGAC-----ACCCAATATATTTTTCCT----------------------GA-A-----CGGTGGGAATGTTTT-GGTCAGCCGGAAGTGGCAAACAAACA--AA-------TTTTTGAATTAGGC
gi|4 : gccacccttAATTGCTTGTTTACCACTTCCGACTCGTACCATTAAC----AGGTG--------GGT---AG-TAGGT----A--------AATTA-TT-TTT-T--TTTTTATTTATCTATTT-----TGTTTGTA-----ACC---------------------A--------AT-------CA------GAGAATCTTTTAAAGAACATGT--AA-TGACCGAGAA-TATTTTAAATG------------------ACACCTAAAAAA--AT-TTTC----CT----------------------GA-C-----CAGCGGGATTGTTTTCAGTCAGCCTGAAGCGGCAAACAAATATTTT-------TTTTTAATTTAGGCct
gi|5 : ttAAAAAATTGCTTGTTTGCCACTTCCAACTCATACCATTTAG----GGGTA--------GTT---TTGTTGGT----ATTTTTTTTAATTT-TT-TTT-T--TTTTTTGTTTTCAATCAGAGAATCTTT-----------TAAAGGAT----ATGT-----A--------AT-GG----CC------GAGA------------ATATTT-----TG----------ATTTTGAATG------------------A-A---------------TTTTTTTATAAAA------------------AA-A-----AAATAGGATTGTTTTGGGTCAGCAGGAAGTGGAAGACAAACA--AT-------ATTTTAATTTAGGCccg
gi|6 : acccttTTGTTTGCCACTTTTGACTCATACCATTTAG----GGGTG--------GAT---A--------------------AATTC-CT-TTT-T--TTTTTTTTAATCAATCAGAGAATCTTTTT-----------AAGTAC----ATGT-----A--------AT-GA----C--------------------------------------CGGAAA-TATTTTTAATG------------------A-A-----------AT-TTTTTTTTTTAAACCTTCCCCCTCCCCCAAAAGA-CTTGACCGGCAGGATTGTTTCGAGTCCGCGT-------CAAACAAACA--AT-------ATTTTGATTTAGc
gi|7 : AAAAAATTG----TTTTCCACTTCCGAGCCATACCACTTAG----GGTTG--------GA----A---AGGT----A--------AATTC----TGG-T--TATTTATTATTCAATCAGAGTATAATTTTAT-Ctcctg
gi|8 : gggccacaattgAAAAAGTGCTTGTTTGCCACTTCCGACTCATACCATTTAG----GGGTGGGTA----GGT---AGGTAGGT----A--------AATTC-TT-TTT-C--TTTTTTTTTTT---TTTGAGAATCTTTTT------------------------------------------------CA------GGGA-------------CATGT--TA-CGACCTAGAA-TATTTTAAATG------------------A-AC-----ACC--Attttttaaagaactattttagatgaacataaaaaaaaatttatttttcaatttgtttttctggatccccaaaatattttccccgccccc
gi|8 : ccacccttA--------GGGACATGT--TA-CGACCTAGAA-TATTTTAAATGAACACCAAAAAAAGATAAA-AC-----AAA--AA-GTC-----CT----------------------GAAC-----CGGCGGGATTGTTTaaaaaagataaaacaaaaagtcctgaaccggcgggattgttt
gi|9 : ccacccttaaaaagtgcttgtttgccacttccgactcataccatttaggggtgggtaggtaggtaggtaaattctttttcttttttttttttttgagaatctttttcAATAAATTGCTTTTTT-CCACTTCCGACTCGTACCATTTAG----GGGTA--------GGT---AGGTAGGT----A--------AATTC-TT-TTTCT--TTTTTTTTAATTAATCAGAG