lowQualScore : 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 11111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111
lowQualScore : 33 1 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 111 2222222 11 3333 1 1111 1 99999999999999999 33 11 222222 11 22222 77777777777777777777777777777777777777777777777777777777777777777777777 33 1 222 55555 666666666666666666666666666666666666666666666666 1 1111 11 3333333 11 1 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 44444444444 1 1 77777777777777777777 222 1 4444444 1 00000000000000000000000000 1 333333 22 1 1 111 2222222222222222 1111111 6666666666666666666666666666666 333333333 22222 111 666666666666666666 1 111 3333333333 1111
lowQualScore : 3 11 5 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 0 66 777 5555555 22 1111 0 9999 7 33333333333333333 00 4 55 8 3 777777 33 0 22 55555 8 00000000000000000000000000000000000000000000000000000000000000000000000 11 0 888 99999 0 3 6 1 888888888888888888888888888888888888888888888888 0 8 7777 8 0 77 3333333 6 44 0 8 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 888 77777777777 7 2 5 11111111111111111111 4 4 111 4 7 6 6 7777777 6 6 66666666666666666666666666 3 7 66 3 666666 22 5 9 1 999 77 5 7 22 555 4444444444444444 3333333 55 0000000000000000000000000000000 000000000 1 22222 0 6 666 3 5 222222222222222222 1 6 222 4444444444 1111 1 9 6 6
lowQualScore : . .. . ....................................................................................................................................................................................................................... . .. ... ....... .. .... . .... . ................. .. . .. . . ...... .. . .. ..... . ....................................................................... .. . ... ..... . . . . ................................................ . . .... . . .. ....... . .. . . ........................................................................................................................... ... ........... . . . .................... . . ... . . . . ....... . . .......................... . . .. . ...... .. . . . ... .. . . .. ... ................ ....... .. ............................... ......... . ..... . . ... . . .................. . . ... .......... .... . . . .
lowQualScore : 0 55 0 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 2 88 000 2222222 22 7777 0 0000 0 33333333333333333 33 7 77 3 2 000000 88 2 22 77777 0 00000000000000000000000000000000000000000000000000000000000000000000000 88 0 888 77777 7 7 0 0 555555555555555555555555555555555555555555555555 0 0 0000 0 8 88 2222222 0 88 6 0 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 999 99999999999 0 5 0 55555555555555555555 0 0 555 0 0 0 0 0000000 0 0 55555555555555555555555555 0 0 88 2 000000 00 0 2 0 000 99 7 6 88 000 2222222222222222 0000000 55 7777777777777777777777777777777 777777777 9 66666 1 4 999 9 0 888888888888888888 7 7 777 0000000000 9999 9 3 0 7
consensus : TTCANAGAAAGTTCAATCCCCGANGTA-TTTAT-TGTAAAGTTTATTTTCCCAGTTGGAACANGTATTTTGANANATGCTCAATCTCGAAGTNGAGATAATCTNCATGCA---TTTCAAAGNAGTGCTGACGCTCAGTACNTC-A---AAAN--AATNTACGTN--TANA--TTA---T-A-TATATTTAACAG-AAGGTTCAATCTCCGAGTTG--A-ANT--ATGCA-TTT-T-AAAGAAAGTTCAATCTC-GAAGTTGNATTTAC-GCATTTCAT-AAAATGT-CTCCATGAAAAAGTTCAAC--CATTATCTCCCAG--CTGAC-TNTACATTTTAAATACAAAAT-----TGA--ATATCCAAGTTGAATNATAATATAT-TTCACAGAAA-------------G---AT------GT----------------T---ATACATTTAAAAAGTTCAAT----CTCGAAGTTGAA-TTAT-GTATTTCAAAGA--GT-CAATNTTGACGCTCAGCACACCGTTAGCTCGGAGTCAATA--CTA-TGTATAT--ATGTATATATTG-TT-TTTA-A----AA-AAAGGTTCAA---TCTCCTAGTTGAATTATGCAAAC-AATATT-TAAA-T-A-AAATAACGGTGACTAGGA--NATAC-ATA-----TATGTGCAAAN----------AN----------------ACA------AAT-CAT---TT---------TTGTTTTGTT----TGGAACCT-ATTTATTTT--------G-ATAGTCGCTTACGGAGTACTGTCAATAAGNAAAATAATATTGCNTNGCTNGGTGAANTGTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAAAGTGCATGGCTGTATCTACTGCGCCATGGAGGCTGTTGTAACGAGATCGGAGGTATANGATTANGTTTATAAATTAAT-A-TTTGAAAAC-TACCGAAAATAGTTCCAAG-ATAG--CTGGTA-TNTATCTCCGAACTGAATTANAATAATCGGC------GATT----CGGAACT-------CA--ACTGTNG-----AACT----------------A---TTTCA-T-GG----ACGTCCTTCGGTTTG----TGAAAGTTGTTACTATTTATAGAACATCT-TTTATAGAACATCTATCCTACGAAGCTTCGAAACGCGA------CTACT---AAACCTAGGCAAATNTGCCCAGG-TAAA
Reference ( gi|2 ) : TTCAAAGAATGTTCAATCTCCAAGATAATCCATATGTA-------------CA-TTG---TATATATTT-AACAAATGTCCAGCCTCCAAGTTAAAATAAT--ACATGTAATCTGTCAAAGAA-TGTT------CAAT-CTTCCA---AGAT--AATCTACATG--TACA--TTG---T-A-TATCTTTAACA--AATGTCCAGTCTCCAAGTTA--A-AAT--ATGCAGTCTGTCAAAGAAAGTTCAATCTC-AAAGACGTATCTAT-ACATTTTATGAAAATAT-CTACAGGAAAATGTTCAACGGCA--ATCTCCCAT--CTGAGTTATACACGTTATATACAAAAC-----TGA--ATATCCAAGCTACATAATAATATAT-TTCACAGAAA-------------G---AT------GT----------------T---ATGTATTTAAAAAGT----T----CTCGAAGTATAA-TTAT-CAATTTCAAAGAATGCTCAGTGTTGACGCTTAGTACAAC-TTAACTCAGAGTTAATA--CTA-TGTTTGT--TTGTATAAATTGATT-TTTA-A----AA-AAAGATTCAG---TTGCTTAGTTGAATTATACAAAT-AATATT-TAAACT-ACAGATAACGGTGACCAGGA--GATAC-ATG-----TATGTGCAAAG----------AT----------------ACA------ATT-CAT---TT---------TTGTTTTGTTTATATGGAACCC-ATTTATTTC--------G-ATAGTCGTTAATGGCGTACTG-C----AACAAAACA----TGTTTTGCTTA-TGAAATGAACCTAAACATTCGATTTCTGCGGTCTTCGAACCTTGACCGCCAGAACGAAAAT-CAGGAATGCATATACTACGCCATGGAGGCTGTTGTAACTA---TGGACGTTTAC--TTATGATTATAAATTAAT-ATTTTGAAAACTTACCGACAATAGGTTCAGA-ATAG--CTGGTA-TATATCTCCAAACTAAATGACAATAATCGGC------AATT----CAGAACT-------CA--ACTGTAT-----AACT----------------A---TTTCA-T-G-----ACGTCCTTCGGTTTA----TGAAAGTTATTAATATTTATAGAACATCTTTTTATAGAACATCTTTCCTACGATGCTTCGAAACGCGA------CAACT---AAACCTAGGCAAATGTGCCCAAG-TAAA
gi|4 : TTCACAGAAAGTT-AATCTCCGAG------------------------------TTGG--CAAATATTT-G-CAAA-GTTCAATCTCGAAGTTGA-----T--TTATGCA---TTTCAAAAAAGTGTTGACGCTCAGTACATCAATATATAT--ACTATACATGTATATA--TTG---T-T-TATCTAAAATA--AAGGTTCAATCTCCGAGTTG--A-ATT--ATGCA
gi|1 : atctagatgcttttaccatattttataaaatatctccctgaaaaagttcaaccattatctcagagctgacttttacattttaaatacattattaaaaagccaaattaaattatgatatatTTTAAAAA--GTTCAATCCCCAATGTA-TTTAT-TGTAAAGTTTATTTTCCCAGTTGAAATATGTATTTTAAAACATGCTCAATC-----ATAAAGATAATCTACATGTA------TAAAGTA-TAC---------AT-CTT--A---AAAA--AATTTG-GTT--TCCAAGTTGAAAT-G-TATATTTAAAAG-AAAGTCCCATCTTCAAGGCG--A-TCTTCATGTA-TATTTAAAAGAATGTCCCATCTCCAAAGTGGTATTTAT-GTATTT-AT----ATGT-CACCATGAAAAAGTTAAAC--CA--TTATACCAGAGCTGA--TGTATAAGTTTTA---AAAACAATTTTGA--ATATTTAAGTTGAATGATAATATAT-TTCAAAGAAACCTTTATCTCCAAG---AT------GA----------------C---ATATATTAAAAAAGT----TGAATCTCGAAGTTGAA-TAAT-GTATTTCAAAGAAAATACAATATTGACGCTCATCACATCGTTAGCTTAGAGTTAAT---CTGCTGTATAT--ATGTATATATTG-TT-TTTATATTTTAA-AAATGTTCAACAATCTCCTAGTTGAATTATGCAAAC-AATATT-AAAAATGAAAAAGAACAGTTGCT------GA------A-----TATGTGCAAAGAAATAACTGCAT----------------ACATGGATGATT-CAT---TT---------CT-TTTTGT-----TGGAACCT-ATTTCTCTC--------aacaaaaatttaaaaaatatgaaaagaactattactagatatgtgcaaagaaattattgcatttatggacacatttttttgttttattgaatctatttaaaaagaacagtcgtttactgagtactgtaataaacaaaataatattgcttagcttagtgaaatgtacaataaaatgtttgtcgcccaaacggcggcaatcggcttatcaaataaatgaatacgaaaagaataattaattcatcaaatattctataacaaaattacgaagtactgagaatagttccatgctaactggtttatatatccaaattaaattaaaacaatcggcgatagggaacttatctatggaactattttaggacgacctttgtttgtatccttctattaatagaacatcaatcatatgaagcttcgaaacgcgacttaaccgaggcaaattggccgaggta
gi|12 : CA---AAATTGAATATACAAG--TCGAG-TTA---T-AATATATTTCACAGAAAGGTTTA-TCTCCCAGATG--ACAAT--ATGCA-TTT-----AAAAAGTTCAATCTC-GAAGTTGAAT-TAT-GCAtgaatacgatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatggcgacaatctactgcgccatgaaggctgtataatgactgaggtacgattaggtttataaattatatttaaaaacttaatacgcaatgctaattagataacctaatacgtaaagatatgtaattaagaaaagacaaaattaacaaaaaaaaagaaaataccgaacatagttccaagatagcaggtatttatctctgaacagaattaggataaacggcgaatctaatgtagaactattttttcagcggtataattttatggacgttattcggttttgaaagttgttactatttataaaacatatatcgtatgaaactttgtt
gi|3 : taA---AAAA--AATCTATGTT--TACA--CTA-----A-GAGGTTTA-CA-----GTTCAATCTCAAAGTTG--A-ATT--ATATATT---TCAAAGA--GTTCAATTTaata
gi|4 : tcaaattcata--TAAA--TTA---TGA-TATATTTCACAG-AAAGTT-AATCTCCGAGTTGGCA-AAT--AT-----TTGC-----AAAGTTCAATCTC-GAAGTTG-ATTTAT-GCATTTCAAAAAAGTGT-tgatgttcagcacaccgttagtttggagtcaatatttttatgaatatattgttttgaaaaaaaagttcagtatcttagttgtagtatgcaaatgatattaaagataacaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccaggtcctgtaaatggacaaatcaattttgttttgttggaacctannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatggcaaaagtgcatggctgtatttactatgtcatggaggttttgctagattgaaagtataattatgttcataaattaatcattaaaaacttaacccactacgcttatcagataaatgaaaagaacaaataataaatcaaatatacagtaaaaaacaagacacctaaaatagtttgtaagtagctggtattacctctgagcagaataaggttaatcggcaatttggaactcaactgttgaaatattttttcactggtagaacatccttcagttttgaaagttgttactatttgtagaacatttattcctacaaaatcttagacaaatttgccaaagtaaaaactac
gi|4 : atctagatgcttttaccatattttataaaatatctccctgaaaaagttcaaccattatctcagagctgacttttacattttaaatacattattaaaaagccaaatATCT----AGATGCTTTTACCATATTTTAT-AAAATAT-CTCCCTGAAAAAGTTCAAC--CATTATCTCAGAG--CTGACTTTTACATTTTAAATACATTAT-----TAA--AAAGCCAAATTAAATTATGATATAT-TTCACAGAAA-------------GTTAATCTCCGAGT----------------TGGCAAATATTTGCAAAGTTCAAT----CTCGAAGT-TGATTTAT-GCATTTCAAAAA------AGTGTTGACGCTCAGTACA--------TCAATATATATA--CTA-----TAC--ATGTATATATTGTTTATCTA-A----AATAAAGGTTCAA---TCTCCGAGTTGAATTATGCAAACAAAAATT-TAAA-----AAATA----TGAAAAGAACTATTACTAGA-----TATGTGCAAAG----------AA----------------ATT------ATTGCAT---TTATGGACACATTTTTTTGTTT-TATTGAATCT-ATTTAAAAA--------GAACAGTCGTTTACTGAGTACTG-TAATAAACAAAATAATATTGCTTAGCTTAGTGAAATGTACtgacgctcagtacatcaatatatatactatacatgtatatattgtttatctaaaataaaggttcaatctccgagttgaattatgcaaacaaaaatttaaaaaatatgaaaagaactattactagatatgtgcaaagaaattattgcatttatggacacatttttttgttttattgaatctatttaaaaagaacagtcgtttactgagtactgtaataaacaaaataatattgcttagcttagtgaaatgtacaataaaatgtttgtcgcccaaacggcggcaatcggcttatcaaataaatgaatacgaaaagaataattaattcatcaaatattctataacaaaattacgaagtactgagaatagttccatgctaactggtttatatatccaaattaaattaaaacaatcggcgatagggaacttatctatggaactattttaggacgacctttgtttgtatccttctattaatagaacatcaatcatatgaagcttcgaaacgcgacttaaccgaggcaaattggccgaggta
gi|13 : ATATTCTCCATGAAAAAGTCCAAC--CATTACCTCCC----CTGATGTATACATTTTAAATACAAAAT-----TGAATATATCCAATCTG---AATGGTATGT-TTCATAGAAaataaaatgtttgtcgcccaaacggcggcaatcggcttatcaaataaatgaatacgaaaagaataattaattcatcaaatattctataacaaaattacgaagtactgagaatagttccatgctaactggtttatatatccaaattaaattaaaacaatcggcgatagggaacttatctatggaactattttaggacgacctttgtttgtatccttctattaatagaacatcaatcatatgaagcttcgaaacgcgacttaaccgaggcaaattggccgaggta
gi|12 : tttTACAAAAT-----TGA--ATATACAAGTCGAGTTATAATATAT-TTCACAGAAA-------------G---GT------TTATCTCCCAGATGACAAT---ATGCATTTAAAAAGTTCAAT----CTCGAAGTTGAA-TTATGCAA
gi|3 : AAAAATCTATGTTTACACTAA-------------G---AG------GT----------------T----TACAGTTCAA--------T----CTCAAAGTTGAA-TTAT-ATATTTCAAAGA--GTTCAATTTTGATGTTCAGCACACCGTTAGTTTGGAGTCAATA--TT----TTTAT----GAATATATTG-TT-TTGA-A----AA-AAAAGTTCAG---TATCTTAGTTGTAGTATGCAAAT-GATA-T-TAA------AGATAACata
gi|6 : tcaaattcataaaAGCTCGGAGTCAATATACTA-TATATGTGGTT-----AAT--ATT-TTTA-A----AA-G----TTCAA---TCTCCTAGCTGAATTATGCATA--AATA-T-TAA------AGATAACAAAGACT-GGA--TATAT-ATGCTAAATATCTGCAAAG----------ATAGAAATGAATATGTTGACA------AAT-CAT---TT---------TTGTTTTAT-----TGGAACTC-AATTTTTTT--------T-ATAGaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccaggtcctgtaaatggacaaatcaattttgttttgttggaacctannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatggcaaaagtgcatggctgtatttactatgtcatggaggttttgctagattgaaagtataattatgttcataaattaatcattaaaaacttaacccactacgcttatcagataaatgaaaagaacaaataataaatcaaatatacagtaaaaaacaagacacctaaaatagtttgtaagtagctggtattacctctgagcagaataaggttaatcggcaatttggaactcaactgttgaaatattttttcactggtagaacatccttcagttttgaaagttgttactatttgtagaacatttattcctacaaaatcttagacaaatttgccaaagtaaaaactac
gi|9 : agagtattgta-A----AA-AAAG-TTAAA---TATCTTAGTGGAATTATGCAAAT-ATTATTATAGATT-ACAAAGACCGGTAACCAAGA--TATAA-ATG-----CAT----AAAT----------GG----------------ACA------AAC-CAT---TT---------TATTTTTGTTT---TGGAACCT--TTTATTTgataaaattcgaacctggattgtccccctggctctatccactgtgttgcctgtgccattatgtaattgtaggtataatatgtttataaattaaacttaatagctagacttgtcagattaataaatacgaaaagaataagttattcatcataaatacaataaaaataatagaaaataccgaaaatagtgccaagatagctggtatttatctccatactgaatttcaataaaagtggattcgtgcaaaaccaaactgttgaattataatttcaggtgtccttcagtttgtgaaagttattactt
gi|16 : ttatctccgagctgacgttaaaagattaataacaaaattacatatccaaggtgaattaatatagttcaatttttacgcttgacaaactgttaccggtaattaaaattcaattactatataattatgtgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttA--AATGC-ATA-----TATGGACAAAT----------AT----------------A----------T-CTT---TT---------TCGTTTTGTT------GAAACC-TTTTATTTTG-------G-ATA
gi|3 : agatatTGTAAAT----------GG----------------ACA------AAT-CAA---TT---------TTGTTTTGT-----TGGAACCT-Atgacaagtcgt
gi|5 : tcaaattcataaaaaaaatctatgtttacactaagaggtttacagttcaatctcaaagttgaattatatatttcaaagagttcaattttgatgttcagcacaccgttagtttggagtcaatatttttatgaatatattgttttgaaaaaaaagttcagtatcttagttgtagtatgcaaatgatattaaagataacaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccaggtcc----------------ACA------AAT-CATGGTTT---------TTGTTTTGT-----TGGAATCTAATTTATTTTTTTAATAGG-ATATTCGCTTATGGAGTACTGTC----AGAAAAATA-----GTATTGCTGG-TAAATTGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatggcaaaagtgcatggctgtatttactatgtcatggaggttttgctagattgaaagtataattatgttcataaattaatcattaaaaacttaacccactacgcttatcagataaatgaaaagaacaaataataaatcaaatatacagtaaaaaacaagacacctaaaatagtttgtaagtagctggtattacctctgagcagaataaggttaatcggcaatttggaactcaactgttgaaatattttttcactggtagaacatccttcagttttgaaagttgttactatttgtagaacatttattcctacaaaatcttagacaaatttgccaaagtaaaaactac
gi|3 : tatattatgtaattgttttaaatacgtcctagctgagttatgcctaaatattaaagataacaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgCAAAAGTGCATGGCTGTATTTACTATGTCATGGAGGTT-TTG---CTAGATTGAAAGTATAA--TTATGTTCATAAATTAATCA--TTAAAAACTTAgttgccctcccctcaaaaaagagataagttgccttagaatgtgaaccaggacggccagtgcaactttgctacgcttgcagatgaatgagtatggaaaataataagttataaatcaaagatacaattgaaatcaagtaagtaccaacactatttcaaagataagtggtcttgaactgggattatcgcctattcggaactcattatttttttgcggagattttcatggacgtcattcggtttgtgaaaggtgttactcattctatttatagaacacctatcctacaaagcttttaaactttggcaaatttgcccaggtaaaaatagttctgcaa
gi|1 : tcaaattcataaaaaaaatctatgtttacactaagaggtttacagttcaatctcaaagttgaattatatatttcaaagagttcaattttgatgttcagcacaccgttagtttggagtcaatatttttatgaatatattgttttgaaaaaaaagttcagtatcttagttgtagtatgcaaatgatattaaagataacaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccaggtcctgtaaatggacaaatcaattttgttttgttggaacctannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatggATCTACTGCGCCATGAAGGCTG-TATAATGA---CTGAGG--TACGATTAGGTTTATAAATT-AT-A-TTTAAAAACTTAacccactacgcttatcagataaatgaaaagaacaaataataaatcaaatatacagtaaaaaacaagacacctaaaatagtttgtaagtagctggtattacctctgagcagaataaggttaatcggcaatttggaactcaactgttgaaatattttttcactggtagaacatccttcagttttgaaagttgttactatttgtagaacatttattcctacaaaatcttagacaaatttgccaaagtaaaaactac
gi|4 : tttaaaaagttcaatccccaatgtatttattgtaaagtttattttcccagttgaaatatgtattttaaaacatgctcaatcataaagataatctacatgtataaagtatacatcttaaaaaaatttggtttccaagttgaaatgtatatttaaaagaaagtcccatcttcaaggcgatcttcatgtatatttaaaagaatgtcccatctccaaagtggtatttatgtatttatatgtcaccatgaaaaagttaaaccattataccagagctgatgtataagttttaaaaacaattttgaatatttaagttgaatgataatatatttcaaagaaacctttatctccaagatgacatatattaaaaaagttgaatctcgaagttgaataatgtatttcaaagaaaatacaatattgacgctcatcacatcgttagcttagagttaatctgctgtatatatgtatatattgtttttatattttaaaaatgttcaacaatctcctagttgaattatgcaaacaatattaaaaatgaaaaagaacagttgctgaatatgtgcaaagaaataactgcatacatggatgattcatttctttttgttggaacctatttctctctgaatacgatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatggcgacaTATAA--CAAA-ATTACGAAG---TACTGAGAATAGTTCCATG-CTAA--CTGGTT-TATATATCCAAATTAAATTAAAACAATCGGC------GATA----GGGAACT-------TA--TCTATGG-----AACT----------------A---TTTTA-G-G-----ACGACCTTT-GTTTG----T----ATCCTT-CTATTAATAGAACATC---------AA------TCATATGAAGCTTCGAAACGCG---------ACT---TAACCGAGGCAAATTGGCCGAGG-TAatacgcaatgctaattagataacctaatacgtaaagatatgtaattaagaaaagacaaaattaacaaaaaaaaagaaaataccgaacatagttccaagatagcaggtatttatctctgaacagaattaggataaacggcgaatctaatgtagaactattttttcagcggtataattttatggacgttattcggttttgaaagttgttactatttataaaacatatatcgtatgaaactttgtt
gi|6 : atctagatgcttttaccatattttataaaatatctccctgaaaaagttcaaccattatctcagagctgacttttacattttaaatacattattaaaaagccaaattaaattatgatatatttcacagaaagttaatctccgagttggcaaatatttgcaaagttcaatctcgaagttgatttatgcatttcaaaaaagtgttgacgctcagtacatcaatatatatactatacatgtatatattgtttatctaaaataaaggttcaatctccgagttgaattatgcaaacaaaaatttaaaaaatatgaaaagaactattactagatatgtgcaaagaaattattgcatttatggacacatttttttgttttattgaatctatttaaaaagaacagtcgtttactgagtactgtaataaacaaaataatattgcttagcttagtgaaatgtacaataaaatgtttgtcgcccaaacggcggcaatcggcttatcaaataaatgaatacgaaaagaataattaattcatcaaatattcAAAATAAT-A----GAAAA--TACCGAAAATAGTGCCAAG-ATAG--CTGGTA-TTTATCTCCATACTGAATTTCAATAAAAGTG------GATTCGTGCAAAACC-------AA--ACTGTTG-----AATTATA-------------A---TTTCA---G-----GTGTCCTTCAGTTTG----TGAAAGTTATTA
gi|1 : agagtattgtaagctcggagtcaatatactatatatgtggttaatatttttaaaagttcaatctcctagctgaattatgcataaatattaaagataacaaagactggatatatatgctaaatatctgcaaagatagaaatgaatatgttgacaaatcatttttgttttattggaactcaattttttttataggataaaattcgaacctggattgtccccctggctctatccactgtgttgcctgtgccattatgtaattgtaggtataatatgtttataaattaaacttaatagctagacttgtcagattaataaatacgaaaagaataagttattcatcataaatacaataGAAAA--TACCGAACATAGTTCCAAG-ATAG--CAGGTA-TTTATCTCTGAACAGAATTAGGATAAACGGCGAATCTAATG----TAGAACTATTTTTTCA--GCGGTAT-----AA----------------------TTTTA-T-GG----ACGTTATTCGGTTT-----TGAAAGTTGTTACTATTTATAAAACATctt
gi|3 : tttaaaaagttcaatccccaatgtatttattgtaaagtttattttcccagttgaaatatgtattttaaaacatgctcaatcataaagataatctacatgtataaagtatacatcttaaaaaaatttggtttccaagttgaaatgtatatttaaaagaaagtcccatcttcaaggcgatcttcatgtatatttaaaagaatgtcccatctccaaagtggtatttatgtatttatatgtcaccatgaaaaagttaaaccattataccagagctgatgtataagttttaaaaacaattttgaatatttaagttgaatgataatatatttcaaagaaacctttatctccaagatgacatatattaaaaaagttgaatctcgaagttgaataatgtatttcaaagaaaatacaatattgacgctcatcacatcgttagcttagagttaatctgctgtatatatgtatatattgtttttatattttaaaaatgttcaacaatctcctagttgaattatgcaaacaatattaaaaatgaaaaagaacagttgctgaatatgtgcaaagaaataactgcatacatggatgattcatttctttttgttggaacctatttctctctgaatacgatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatggcgacaatctactgcgccatgaaggctgtataatgactgaggtacgattaggtttataaattatatttaaaaacttaatacgcaatgctaattagataacctaatacgtaaagatatgtaattaagaaaagacaaaattaacaaaaaaaaaAAGAC--ACCTAAAATAGTTTGTAA-GTAG--CTGGTA-T-TACCTCTGAGCAGAATAAGGTTAATCGGC------AATT----TGGAACT-------CA--ACTGTTG-----AAAT----------------ATTTTTTCACT-GGTAGAACATCCTTCAGTTT-----TGAAAGTTGTTACTATTTGTAGAACATTTATTCCTACAAAATCTTatatcgtatgaaactttgtt
gi|10 : tcaaattcataaaaaaaatctatgtttacactaagaggtttacagttcaatctcaaagttgaattatatatttcaaagagttcaattttgatgttcagcacaccgttagtttggagtcaatatttttatgaatatattgttttgaaaaaaaagttcagtatcttagttgtagtatgcaaatgatattaaagataacaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccaggtcctgtaaatggacaaatcaattttgttttgttggaacctannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatggcaaaagtgcatggctgtatttactatgtcatggaggttttgctagattgaaagtataattatgttcataaattaatcattaaaaacttaacccactacgcttatcagataaatgaaaagaacaaataataaatcaaatatacagtaaaaaacTACCGAAAATAG-TTCCGATATAG--CTGATATTGTGTCTCCAAAATGAATagacaaatttgccaaagtaaaaactac
gi|7 : tataattttgttaataaattaatatttaaaatcccgctgggcttatttaattgtgtatagtattactaaacaataagtgattgatcaaagatacaaaaaaaataataatacaaagCGAAAATAGTTCCAGT-CTAG--TTGGTT-TATATCTCCAAATTAAATGAAAATAATCGGT------GTTT----CGGAACT-------CA--ATTACGG-----AACT----------------A---TATC--T-GA----ACATCCTTCGGTAGT----TGAAAGTTGTCACTATTTATAGAACATCT---------GCA------CTAC---------AAACGCGA------CTACT---TAACCTAGGCAAATATGTCCAGGTTAAAtg
gi|8 : tataagtttatttttggaaatttacttacacccgctttgcttatttaataaataattacgacaatgataagccattagtcaaatatacagtatcaaagtagagtgaaaA-ATAGTTCTG--A-CATATCTCCGAACGGAATTATTATAACCGGT------A-TT----TGGAACT-------CA--ACTGTTG-----AACTTTTTTTCAGTGGTAGAA---TTTCA-T-GG----AAGTCGTTCTGTTTG----TTAAAG-----AA-ATT-AT----CAT----TTATAGAACATCTACCCTACGAAGTTTTTCAACGCAA------CTACT---AAACAACGGCACATCTGCTTAGA-TAAatgactacttggtatttacagcaaaatccactgtaaatgtatccacctttcatttcttacaataacatgtacgtaaattatagttttgttgatttacactaggtaaattgta
gi|14 : ctatccactgtgtcttgcagggttagagttatatgtacgacttataatcatgttaatacatttatctgtaaacttaaccgacagactataattgataactgaatatgaaaaaaataactaataactaaaacataaaacaaaaacactagaaagtacggaTATCTCCGAGCTGAATTAAAATACTCGGC------GAAT----C-GGACA-------CA--ATTGTTG-----AACT----------------A---TTTCA-T-caataggagactcggttttaacggca
gi|5 : ttATTATCGCC------TATT----CGGAACT-------CATTATTTTTTTGCGGAGAT--------------------TTTCA-T-GG----ACGTCATTCGGTTTG----TGAAAGGTGTTA---CTCAT------TCTATTTATAGAACACCTATCCTACAAAGCTT-------------------TT---AAACTTTGGCAAATTTGCCCAGG-TAAAcagcagtagaaatccatatgcgtgcatcggttt
gi|11 : tatattatgtaattgttttaaatacgtcctagctgagttatgcctaaatattaaagataacaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgacaaatcatggtttttgttttgttggaatctaatttatttttttaataggatattcgcttatggagtactgtcagaaaaatagtattgctggtaaattggttgccctcccctcaaaaaagagataagttgccttagaatgtgaaccaggacggccagtgcaactttgctacgcttgcagatgaatgagtatggaaaataataagttataaatcaaagatacaattgaaatcaagtaagtaccaacactatttcaaagataagtggtcttgaactgggACT-------CG--ACGGTA------GACT----------------C---TCACA-T-------ACGTTCTTCGATTTG----TGAAAGTTGTTTCTATTTATAGAATATCT---------AC------CCCAGGAAGTTTTGGAATGCGT------TACCTGAAAGACCTAGGTAaatagttctgcaa
gi|17 : ctatttttatcgT-------CA--GCAGTAG-----AA----------------------TTTCA-TAG-----ACGTCCTTCGGTCCAACTTTGAAA
gi|15 : tggaactcaactttgaactatttttTTTATAGAACATATATCCTACAAAGCTTTAGTATGCAAATTATTTAACT---AAACCTTGGCAAAAGTGCCCAGG-TAAA
gi|19 : TCTATCCTATGAAGCTGCGAAACGCCA------CTACT---CAGCCTAGACAAAATTGCCCAGG-TAAAaatgatttttcaa
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|18 ): ATGCAATATGTGCAGAGATATAAATGCACACATGGACAAATTATTGTTGGAACTCAACTTT
Alignments
lowQualScore : 11111111111111111111111111111111111 111111111111111111111111111111111111111111111111
lowQualScore : 2 2 55555555555555555555555 22 33333 111 99999999999999999999999999999999999 1 22 333 1 1 22 33333333 2 2222222 1111 1 1 11 333 111 11 111111111111111111111111111111111111111111111111 555555 111 222222222 111111 111 4444444444444444444444444444444444444 222222222222222 222222222 9999999999999999999999999999999999999999999999 22222222 11 3333333333 333333333 22222222 5555555555555555555555555555555555555555555555555555555 111 11 111 1 555555555555555555555555555555 333333333333333333333333333333 11111111111 1111111 444444444444444444444444444444444444444 11111111 333333333333333333 11111111111111
lowQualScore : 1 4 6 1 0 0 33333333333333333333333 1 11 1 1 99999 77 999 6 55555555555555555555555555555555555 1 1 5 1 77 1 555 3 2 5 0 6 3 6 3 55 77 88888888 0 4 3 2222222 1 5555 7 3 7 0 33 0 55 111 1 444 0 6 99 00 5 333333333333333333333333333333333333333333333333 0 1 0 0 2 888888 1 444 1 22 777777777 6 3 6 99 1 222222 99999 000 3 2222222222222222222222222222222222222 5 0 4 1 99 111111111111111 000000000 1 9999999999999999999999999999999999999999999999 0 888 55555555 44 3333333333 0 0 777777777 9 22222222 1 0000000000000000000000000000000000000000000000000000000 0 777 11 1 444 0 8 555555555555555555555555555555 1 3 0 000000000000000000000000000000 44 44 7777 0 1 1 33333333333 1111111 55 99999 1 1 555555555555555555555555555555555555555 00000000 0 5 2 555555555555555555 0 777 00 66666666666666 0 1 5
lowQualScore : . . . . . . ....................... . .. . . ..... .. ... . ................................... . . . . .. . ... . . . . . . . . .. .. ........ . . . ....... . .... . . . . .. . .. ... . ... . . .. .. . ................................................ . . . . . ...... . ... . .. ......... . . . .. . ...... ..... ... . ..................................... . . . . .. ............... ......... . .............................................. . ... ........ .. .......... . . ......... . ........ . ....................................................... . ... .. . ... . . .............................. . . . .............................. .. .. .... . . . ........... ....... .. ..... . . ....................................... ........ . . . .................. . ... .. .............. . . .
lowQualScore : 0 0 0 0 0 0 00000000000000000000000 0 55 0 0 00000 00 000 0 55555555555555555555555555555555555 0 0 0 0 55 0 000 0 5 0 5 0 0 0 0 00 55 55555555 0 0 0 3333333 0 3333 3 3 3 7 88 8 88 666 0 000 8 7 22 77 7 888888888888888888888888888888888888888888888888 8 0 6 8 2 888888 0 000 0 88 333333333 7 2 7 22 4 333333 99999 000 0 1111111111111111111111111111111111111 7 7 3 3 77 888888888888888 222222222 0 1111111111111111111111111111111111111111111111 4 888 44444444 44 5555555555 8 8 000000000 5 55555555 0 9999999999999999999999999999999999999999999999999999999 8 555 00 4 000 6 2 444444444444444444444444444444 0 8 1 444444444444444444444444444444 66 66 4444 5 0 9 22222222222 8888888 00 11111 0 3 666666666666666666666666666666666666666 22222222 7 7 0 222222222222222222 2 555 44 55555555555555 5 0 7
consensus : TTCAAAGAANGTTCAATCCCCAANGTAATCCATATGTAAAGTTTATTTTCCCAGTTGAAATATGTATTTTAANANATGCCCAGCCTCCAAGTNAAGATAATCTACATGTAATCTGTCAAAGNA-------TGTTCAATNCNCCTTAAGANAATCTGCGTNTCCACGTTGAAGTGTATNTTTAANAGAANGTCCCGTCTCCAAGNCGANNTTCATGCANATCTGTCAAAAGAANGTCCNATCTC-GAAG-CGTATTTAT-ATATTTTAT-AAAATATCTCCATGAAAAAGTTCAAC--CATTATCTCCGAGCTGA-CGTATACA---TTTTAAATA-CAAAATTGA--ATATCCAAGTTGAATNATAATATAT-TTCACAGAAA-------------G---AT------GT----------------T---ATATATTTAAAAAGTTCAATCTCGAAGTTGAATTATGCATTTCAAAGAA-G-T-CAGTGTTGACGCTCAGCACANCGTTAGCTCGGAGTCAATAC-TA-TG-TATAT-ATGTATATATTG-TT--TTTA-A----AA-AAANGTT---CAATCTCCTAGTTGAATTATGCA---------------AAC-AATATT-TAA-A-T--A-A-AATAACGGTGACCAGGA-TA-TAC-AT-----ATATG--------TGCAAAGA----------------G--------ACAA----A------------TCAT---TTTTGTTTTG-TT----TGGAACCTA-TTTATTTT--------G-ATAGTCGTTTACGGAGTACTGTCAATAAGCAAAATAGTATTGCTTNGCTTGGTGAAATGNACCGNNNCNCCCNNNNNNNGCGGNCNNNNNGCCTTGGNNNNCGNANCGAAAGTGCACGGC---TGCA--TCTACTACG---CCATGGAGGCTGTTGTAACGAG-ATTGGAGGTATAN-ATTATGTTTATAAATTAA---TA-C----TTGAAA-------AC----TACCGAAAATAGTTC-CAAGATAGCTGGTA-TNTATCTCCGAACTGAATTANAATAATCGGCGATTC------G----GAAC-------TCA--ACT-----GTNGAACT----------------A---TT-----------------TCA-TGG----ACGTCCTTCGGTTTGTGAAAGTTGTTACTATTTATAGAACATC-T-TTTATAGAACATCTATCCTACGAAGCTTCGAAACGCGACT------ACT----AAACCTAGGCAAATNTGCCCAGG-TAAA
Reference ( family-574 ) : TTCANAGAAAGTTCAATCCCCGANGTA-TTTAT-TGTAAAGTTTATTTTCCCAGTTGGAACANGTATTTTGANANATGCTCAATCTCGAAGTNGAGATAATCTNCATGCA---TTTCAAAGNAGTGCTGACGCTCAGTACNTC--AAAANAATNTACGTNT--ANATT---ATATATATTTAACAGAAGGTTCAATCTCCGAGTTGAANT--ATGCAT-TTT---AAA-GAAAGTTCAATCTC-GAAGTTGNATTTAC-GCATTTCAT-AAAATGTCTCCATGAAAAAGTTCAAC--CATTATCTCCCAGCTGA-C-TNTACA---TTTTAAATA-CAAAATTGA--ATATCCAAGTTGAATNATAATATAT-TTCACAGAAA-------------G---AT------GT----------------T---ATACATTTAAAAAGTTCAATCTCGAAGTTGAATTATGTATTTCAAAGAG---T-CAATNTTGACGCTCAGCACACCGTTAGCTCGGAGTCAATAC-TA-TG-TATAT-ATGTATATATTG-TT--TTTA-A----AA-AAAGGTT---CAATCTCCTAGTTGAATTATGCA---------------AAC-AATATT-TAA-A-T--A-A-AATAACGGTGACTAGGA-NA-TAC-AT-----ATATG--------TGCAAANA----------------N--------ACAA----A------------TCAT---TTTTGTTTTG-TT----TGGAACCTA-TTTATTTT--------G-ATAGTCGCTTACGGAGTACTGTCAATAAGNAAAATAATATTGCNTNGCTNGGTGAANTGTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAAAGTGCATGGC---TGTA--TCTACTGCG---CCATGGAGGCTGTTGTAACGAG-ATCGGAGGTATANGATTANGTTTATAAATTAA---TA-T----TTGAAA-------AC----TACCGAAAATAGTTC-CAAGATAGCTGGTA-TNTATCTCCGAACTGAATTANAATAATCGGCGATTC------G----GAAC-------TCA--ACT-----GTNGAACT----------------A---TT-----------------TCA-TGG----ACGTCCTTCGGTTTGTGAAAGTTGTTACTATTTATAGAACATC-T-TTTATAGAACATCTATCCTACGAAGCTTCGAAACGCGACT------ACT----AAACCTAGGCAAATNTGCCCAGG-TAAA
gi|1 : AAAAAGTTCAATCCCCAATGTA-TTTAT-TGTAAAGTTTATTTTCCCAGTTGAAATATGTATTTTAAAACATGCTCAATC-----ATAAAGATAATCTACATGTA---T---AAAGTA--------------TACATCTTAAAAAAATTTG-GTTTCCAAGTTGAAATGTATATTTAAAAGAAAGTCCCATCTTCAAGGCGATCTTCATGTATATTT---AAAAGAATGTCCCATCTCCAAAGTGGTATTTAT-GTATTT-AT-A---TGTCACCATGAAAAAGTTAAAC--CATTATACCAGAGCTGA-TGTATAAG---TTTTAAAAA-CAATTTTGA--ATATTTAAGTTGAATGATAATATAT-TTCAAAGAAACCTTTATCTCCAAG---AT------GA----------------C---ATATATTAAAAAAGTTGAATCTCGAAGTTGAATAATGTATTTCAAAGAAAA-TACAATATTGACGCTCATCACATCGTTAGCTTAGAGTTAAT-C-TGCTG-TATAT-ATGTATATATTG-TT--TTTATATTTTAA-AAATGTTCAACAATCTCCTAGTTGAATTATGCA---------------AAC-AATATTAAAA-A-TGAA-A-AAGAACAGTTGCT--GA---------------ATATG--------TGCAAAGA----------------A--------ATAACTGCATACATGGATGATTCAT---TTCT-TTTTG--T----TGGAACCTA-TTT
gi|1 : tttA--TCTACTGCG---CCATGAAGGCTG-TATAATGA----CTGAGG--TACGATTAGGTTTATAAATT-A---TA-T----TTAAAA-------AC----Tctctctgaatacgatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatggcgacaatctactgcgccatgaaggctgtataatgactgaggtacgattaggtttataaattatatttaaaaacttaatacgcaatgctaattagataacctaatacgtaaagatatgtaattaagaaaagacaaaattaacaaaaaaaaagaaaataccgaacatagttccaagatagcaggtatttatctctgaacagaattaggataaacggcgaatctaatgtagaactattttttcagcggtataattttatggacgttattcggttttgaaagttgttactatttataaaacatatatcgtatgaaactttgtt
gi|1 : tttaaaaagttcaatccccaatgtatttattgtaaagtttattttcccagttgaaatatgtattttaaaacatgctcaatcataaagataatctacatgtataaagtatacatcttaaaaaaatttggtttccaagttgaaatgtatatttaaaagaaagtcccatcttcaaggcgatcttcatgtatatttaaaagaatgtcccatctccaaagtggtatttatgtatttatatgtcaccatgaaaaagttaaaccattataccagagctgatgtataagttttaaaaacaattttgaatatttaagttgaatgataatatatttcaaagaaacctttatctccaagatgacatatattaaaaaagttgaatctcgaagttgaataatgtatttcaaagaaaatacaatattgacgctcatcacatcgttagcttagagttaatctgctgtatatatgtatatattgtttttatattttaaaaatgttcaacaatctcctagttgaattatgcaaacaatattaaaaatgaaaaagaacagttgctgaatatgtgcaaagaaataactgcatacatggatgattcatttctttttgttggaacctatttctctctgaatacgatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatggcgacaGAAA-------A-----TACCGAACATAGTTC-CAAGATAGCAGGTA-TTTATCTCTGAACAGAATTAGGATAAACGGCGAATCTAATGTA----GAACTATTTTTTCA--GCG-----GTATA-------------------A---TT-----------------TTA-TGG----ACGTTATTCGGTTT-TGAAAGTTGTTACTATTTATAAAACATtaatacgcaatgctaattagataacctaatacgtaaagatatgtaattaagaaaagacaaaattaacaaaaaaaaagaaaataccgaacatagttccaagatagcaggtatttatctctgaacagaattaggataaacggcgaatctaatgtagaactattttttcagcggtataattttatggacgttattcggttttgaaagttgttactatttataaaacatatatcgtatgaaactttgtt
gi|10 : tttaaaaagttcaatccccaatgtatttattgtaaagtttattttcccagttgaaatatgtattttaaaacatgctcaatcataaagataatctacatgtataaagtatacatcttaaaaaaatttggtttccaagttgaaatgtatatttaaaagaaagtcccatcttcaaggcgatcttcatgtatatttaaaagaatgtcccatctccaaagtggtatttatgtatttatatgtcaccatgaaaaagttaaaccattataccagagctgatgtataagttttaaaaacaattttgaatatttaagttgaatgataatatatttcaaagaaacctttatctccaagatgacatatattaaaaaagttgaatctcgaagttgaataatgtatttcaaagaaaatacaatattgacgctcatcacatcgttagcttagagttaatctgctgtatatatgtatatattgtttttatattttaaaaatgttcaacaatctcctagttgaattatgcaaacaatattaaaaatgaaaaagaacagttgctgaatatgtgcaaagaaataactgcatacatggatgattcatttctttttgttggaacctatttctctctgaatacgatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatggcgacaatctactgcgccatgaaggctgtataatgactgaggtacgattaggtttataaattatatttaaaaacttaatacgcaatgctaattagataacctaatacgtaaagatatgtaattaagaaaagacaaaattaacaaaaaaaaaATAA--TAA---TA-C--------AA-------AG----TACCGAAAATAGTTC-CGATATAGCTGATATTGTGTCTCCAAAATGAATTatatcgtatgaaactttgtt
gi|11 : tataattttgttaataaattaatatttaaaatcccgctgggcttatttaattgtgtatagtattactaaacaataagtgattgatcaaagatacaaaaaaaAC-------TCG--ACG-----GTAGA-CT----------------C---TC-----------------ACA-T------ACGTTCTTCGATTTGTGAAAGTTGTTTCTA----------------TTTATAGAATATCTACCCCAGGAAGTTTTGGAATGCG-TT------ACCTGAAAGACCTAGGTAg
gi|12 : ctatttttatcgTA-CAAAATTGA--ATATACAAGTCGAGTTATAATATAT-TTCACAGAAA-------------G---GT------TTATCTCCCAGATGACAAT---ATGCATTTAAAAAGTTCAATCTCGAAGTTGAATTATGCA
gi|13 : TCTCCATGAAAAAGTCCAAC--CATTACCTCCC--CTGA-TGTATACA---TTTTAAATA-CAAAATTGAATATATCCAATCTGAATG---GTATGT-TTCATAGAAaata
gi|14 : tttatat-TTTATCTCCGAGCTGAATTAAAATACTCGGCGAATC------G----G-AC-------ACA--ATT-----GTTGAACT----------------A---TT-----------------TCA-T
gi|15 : -TTTATAGAACATATATCCTACAAAGCTTTAGTATGCAAATTATTTAACT----AAACCTTGGCAAAAGTGCCCAGG-TAAAcagcagtagaaatccatatgcgtgcatcggttt
gi|16 : A-AA-TGC-AT-----ATATG--------GACAAATA----------------T--------A--------------------TCTT---TTTCGTTTTG--T----TGAAACCT--TTTATTTTG-------G-ATAaatgatttttcaa
gi|17 : agatat------G----GAAC-------TCA--ACT------TTGAACT----------------A---TTTTTTCAGCAGTAGAATTTCA-TAG----ACGTCCTTCGGTtgacaagtcgt
gi|19 : tTCTATCCTATGAAGCTGCGAAACGCCACT------ACT----CAGCCTAGACAAAATTGCCCAGG-TAAAccaactttgaaa
gi|2 : TTCAAAGAATGTTCAATCTCCAAGATAATCCATATGTA-------------CA-TTG---TATATATTT-AACAAATGTCCAGCCTCCAAGTTAAAATAAT--ACATGTAATCTGTCAAAGAA-------TGTTCAATCTTCC--AAGATAATCTACATGT--ACATT---GTATATCTTTAACA-AATGTCCAGTCTCCAAGTTAAAAT--ATGCAG-TCTGTCAAA-GAAAGTTCAATCTC-AAAGACGTATCTAT-ACATTTTATGAAAATATCTACAGGAAAATGTTCAACGGCA--ATCTCCCATCTGAGT-TATACA---CGTTATATA-CAAAACTGA--ATATCCAAGCTACATAATAATATAT-TTCACAGAAA-------------G---AT------GT----------------T---ATGTATTTAAAAAGT----TCTCGAAGTATAATTATCAATTTCAAAGAATGCT-CAGTGTTGACGCTTAGTACAAC-TTAACTCAGAGTTAATAC-TA-TG-TTTGT-TTGTATAAATTGATT--TTTA-A----AA-AAAGATT---CAGTTGCTTAGTTGAATTATACA---------------AAT-AATATT-TAA-ACT--ACA-GATAACGGTGACCAGGA-GA-TAC-AT-----GTATG--------TGCAAAGA----------------T--------ACAA----T------------TCAT---TTTTGTTTTG-TTTATATGGAACCCA-TTTATTTC--------G-ATAGTCGTTAATGGCGTACTG-CAA----CAAAACA----TGTTTTGCTT-ATGAAATGAACCTAAACATTCGATTTCTGCGGTCTTCGAACCTTGACCGCCAGAACGAAAAT-CAGGAA---TGCA--TATACTACG---CCATGGAGGCTGTTGTAACTA----TGGACGTTTAC--TTATGATTATAAATTAA---TATT----TTGAAA-------ACT---TACCGACAATAGGTT-CAGAATAGCTGGTA-TATATCTCCAAACTAAATGACAATAATCGGCAATTC------A----GAAC-------TCA--ACT-----GTATAACT----------------A---TT-----------------TCA-T-G----ACGTCCTTCGGTTTATGAAAGTTATTAATATTTATAGAACATCTT-TTTATAGAACATCTTTCCTACGATGCTTCGAAACGCGACA------ACT----AAACCTAGGCAAATGTGCCCAAG-TAAAa
gi|3 : AATCTATGTTTACACTAA-------------G---AG------GT----------------T----TACA--------GTTCAATCTCAAAGTTGAATTATATATTTCAAAGAG---TTCAATTTTGATGTTCAGCACACCGTTAGTTTGGAGTCAATAT-TT-T------T-ATGAATATATTG-TT--TTGA-A----AA-AAAAGTT---CAGTATCTTAGTTGTAGTATGCAAATGATATTAAAGATAAC-AANNNN-NNN-N-N--N-N-NNNNNNNNNNNNNNNNN-NN-NNN-NN-----NNNNNCCAGGTCCTGTAAATG----------------G--------ACAA----A------------TCAA---TTTTGTTTTG-TT-----GGAACCT-----ANNNN--------N-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGGCAAAAGTGCATGGC---TGTA--TTTACTATG---TCATGGAGGTT-TTG---CTAG-ATTGAAAGTATA--ATTATGTTCATAAATTAA---TC-A----TTAAAA-------AC----T
gi|3 : tcaaattcataaaaaaATAAATCAAA--TA-TACAGTAAAAA-------ACAAGACACCTAAAATAGTTTGTAAG-TAGCTGGTA-T-TACCTCTGAGCAGAATAAGGTTAATCGGCAATTT------G----GAAC-------TCA--ACT-----GTTGAAAT----------------ATTTTT-----------------TCACTGGTAGAACATCCTTCAGTTT-TGAAAGTTGTTACTATTTGTAGAACATT-TATTCCTACAAAATCTtaacccactacgcttatcagataaatgaaaagaacaaataataaatcaaatatacagtaaaaaacaagacacctaaaatagtttgtaagtagctggtattacctctgagcagaataaggttaatcggcaatttggaactcaactgttgaaatattttttcactggtagaacatccttcagttttgaaagttgttactatttgtagaacatttattcctacaaaatcttagacaaatttgccaaagtaaaaactac
gi|4 : tcaaattcataaaaaaaatctatgtttacactaagaggtttacagttcaatctcaaagttgaattatatatttcaaagagttcaattttgatgttcagcacaccgttagtttggagtcaatatttttatgaatatattgttttgaaaaaaaagttcagtatcttagttgtagtatgcaaatgatattaaagataacaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccaggtcctgtaaatggacaaatcaattttgttttgttggaacctannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatggcaaaagtgcatggctgtatttactatgtcatggaggttttgctagattgaaagtataattatgttcataaattaatcattaaaaacttaacccactacgcttatcagataaatgaaaagaacaaataATCTA-GA---TGCTTTTACCATATTTTAT-AAAATATCTCCCTGAAAAAGTTCAAC--CATTATCTCAGAGCTGA-CTTTTACA---TTTTAAATA-CATTATTAA--AAAGCCAAATTAAATTATGATATAT-TTCACAGAAA-------------GTTAATCTCCGAGT----------------TGGCAAATATTTGCAAAGTTCAATCTCGAAGTTGATTTATGCATTTCAAAAA-------AGTGTTGACGCTCAGTACA--------------TCAATATATA-TACTATAC-ATGTATATATTG-TTTATCTA-A----AATAAAGGTT---CAATCTCCGAGTTGAATTATGCA---------------AACAAAAATT-TAA------A-A-AATA----TGAAAAGAACTATTACTAG-----ATATG--------TGCAAAGAAATTATTGCATTTATGG--------ACAC----A------------TT-T---TTTTGTTTTA-TT------GAATCTA-TTTAAAAA--------GAACAGTCGTTTACTGAGTACTGT-AATAAACAAAATAATATTGCTTAGCTTAGTGAAATGTACtagacaaatttgccaaagtaaaaactac
gi|4 : A-------AG----TACTGAGAATAGTTC-CATGCTAACTGGTT-TATATATCCAAATTAAATTAAAACAATCGGCGATAG------G----GAAC-------TTA--TCT-----ATGGAACT----------------A---TT-----------------TTA--GG----ACGACCTTT-GTTTGT----ATCCTT-CTA-TTA---------------ATAGAACATCAATCATATGAAGCTTCGAAACGCGACT--------T-----AACCGAGGCAAATTGGCCGAGG-TAaataaaatgtttgtcgcccaaacggcggcaatcggcttatcaaataaatgaatacgaaaagaataattaattcatcaaatattctataacaaaattacgaagtactgagaatagttccatgctaactggtttatatatccaaattaaattaaaacaatcggcgatagggaacttatctatggaactattttaggacgacctttgtttgtatccttctattaatagaacatcaatcatatgaagcttcgaaacgcgacttaaccgaggcaaattggccgaggta
gi|5 : atctagatgcttttaccatattttataaaatatctccctgaaaaagttcaaccattatctcagagctgacttttacattttaaatacattattaaaaagccaaattaaattatgatatatttcacagaaagttaatctccgagttggcaaatatttgcaaagttcaatctcgaagttgatttatgcatttcaaaaaagtgttgacgctcagtacatcaatatatatactatacatgtatatattgtttatctaaaataaaggttcaatctccgagttgaattatgcaaacaaaaatttaaaaaatatgaaaagaactattactagatatgtgcaaagaaattattgcatttatggacacatttttttgttttattgaatctatttaaaaagaacagtcgtttactgagtactgtaataaacaaaataatattgcttagcttagtgaaatgtacaataaaatgtttgtcgcccaaacggcggcaatcggcttatcaaataaatgaatacgaaaagaataattaattcatcaaatattctataacaaaattacg-TATATTATGTA---ATTG-TT--TT--------AA-ATACGT----------CCTAGCTGAGTTATGCC---------------TA--AATATT-AAAGA-T--A-ACAANNNNNNNNNNNNNNN-NN-NNN-NN-----NNNNN--------NNNNNNNN----------------NNNNNNNCGACAA----A------------TCATGGTTTTTGTTTTG-TT-----GGAATCTAATTTATTTTTTTAATAGG-ATATTCGCTTATGGAGTACTGTCA----GAAAAATAGTATTGCT------GGTAAATTG-GTTGCCCTCCCCTCAAAAAAGAGATAAGTTGCCTTAGAATGTGAACCA-----GGACGGCCAGTGCAACTTTGCTACG---CT-TGCAGA----TG-AATGAGTAT-GGAAA-ATAA---TAAGTT-ATAAATCAAAGATA-CAA--TTGAAATCAAGTAAG----TACCAACACTATTTC-AAAGATAAGTGGT-------CT------TGAACTGGGATTATCGCCTATTC------G----GAAC-------TCATTATTTTTTTGCGGAGAT--------------------TT-----------------TCA-TGG----ACGTCATTCGGTTTGTGAAAGGTGTTACT---CAT------TC-TATTTATAGAACACCTATCCTACAAAGCTT-------------------TT----AAACTTTGGCAAATTTGCCCAGG-TAAA
gi|6 : GTAAGCTCGGAGTCAATA--TA-C--TATAT-ATGTGGTTAATA-TT--TTTA-A----AA-----GTT---CAATCTCCTAGCTGAATTATGCA---------------TA--AATA-T-TA-------A-A-GATAACAAAGACT-GGA-TA-TAT-ATGCTAAATATC--------TGCAAAGATAGAAATGAATATGTTG--------ACAA----A------------TCAT---TTTTGTTTTA--T----TGGAACTCA-ATTTTTTT--------T-ATAGaatagttctgcaa
gi|6 : agagtattTGGC---TCTA--TCCACTGTGTTGCC-TG-----TGCCATTATGTA-ATTGTAGGTATAA---TATGTTTATAAATTAA----A-C----TTAATA-------GC----TAgataaaattcgaacctggattgtccccctggctctatccactgtgttgcctgtgccattatgtaattgtaggtataatatgtttataaattaaacttaatagctagacttgtcagattaataaatacgaaaagaataagttattcatcataaatacaataaaaataatagaaaataccgaaaatagtgccaagatagctggtatttatctccatactgaatttcaataaaagtggattcgtgcaaaaccaaactgttgaattataatttcaggtgtccttcagtttgtgaaagttattactt
gi|6 : agagtattgtaagctcggagtcaatatactatatatgtggttaatatttttaaaagttcaatctcctagctgaattatgcataaatattaaagataacaaagactggatatatatgctaaatatctgcaaagatagaaatgaatatgttgacaaatcatttttgttttattggaactcaattttttttataggataaaattcgaacctggattgtcccccATAAA--AA---TA-A----TAGAAA-------A-----TACCGAAAATAGTGC-CAAGATAGCTGGTA-TTTATCTCCATACTGAATTTCAATAAAAGTGGATTC------GTGCAAAAC-------CAA--ACT-----GTTGAATTATA-------------A---TT-----------------TCA---G----GTGTCCTTCAGTTTGTGAAAGTTATTACTgacttgtcagattaataaatacgaaaagaataagttattcatcataaatacaataaaaataatagaaaataccgaaaatagtgccaagatagctggtatttatctccatactgaatttcaataaaagtggattcgtgcaaaaccaaactgttgaattataatttcaggtgtccttcagtttgtgaaagttattactt
gi|7 : agagtattgtaagctcggagtcaatatactatatatgtggttaatatttttaaaagttcaatctcctagctgaattatgcataaatattaaagataacaaagactggatatatatgctaaatatctgcaaagatagaaatgaatatgttgacaaatcatttttgttttattggaactcaattttttttataggataaaattcgaacctggattgtccccctggctctatccactgtgttgcctgtgccattatgtaattgtaggtataatatgtttataaattaaacttaatagctagacttgtcagattaataaatacgaaaagaataagttattcatcataaatacaTGAAA----------------CGAAAATAGTTC-CAGTCTAGTTGGTT-TATATCTCCAAATTAAATGAAAATAATCGGTGTTTC------G----GAAC-------TCA--ATT-----ACGGAACT----------------A---TA-----------------TC--TGA----ACATCCTTCGGTAGTTGAAAGTTGTCACTATTTATAGAACATC-T---------GCA------CTAC---------AAACGCGACT------ACT----TAACCTAGGCAAATATGTCCAGGTTAAAt
gi|8 : tataagtttatttttggaaatttacttacacccgctttgcttatttaataaataattacgacaatgataagccattagtcaaatatacagtatcaaagtagagAA---CA-C----TAGAAA-------G-----TAC-GGAAATAGTTC----------TG--A-CATATCTCCGAACGGAATTATTATAACCGGT-ATTT------G----GAAC-------TCA--ACT-----GTTGAACTTTTTTTCAGTGGTAGAA---TT-----------------TCA-TGG----AAGTCGTTCTGTTTGTTAAAG--------------AAATTATC-A-TTTATAGAACATCTACCCTACGAAGTTTTTCAACGCAACT------ACT----AAACAACGGCACATCTGCTTAGA-TAAatgactacttggtatttacagcaaaatccactgtaaatgtatccacctttcatttcttacaataacatgtacgtaaattatagttttgttgatttacactaggtaaattgta
gi|9 : ctatccactgtgtcttgcagggttagagttatatgtacgacttataatcatgttaatacatttatctgtaaacttaaccgacagactataattgataactgaatatgaaaaaaataactaataactaaaacataaaacaaaTTATCTCCGAGCTGA-C-GTTAAAAGATT---AATAACAAAATTAC--ATATCCAAGGTGAAT--TAATATAG-TTCAcaataggagactcggttttaacggca
gi|9 : TTA-A----AA-AA--GTT---AAATATCTTAGTGGAATTATGCA---------------AAT-ATTATTATAG-ATT--ACA-AAGACCGGTAACCAAGA-TA-TAA-AT-----GCAT------------AAATG----------------G--------ACAA----A------------CCAT---TTTATTTTTGTTT----TGGAACCT--TTTATTTatttttacgcttgacaaactgttaccggtaattaaaattcaattactatataattatgtgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaaaaaagttaaatatcttagtggaattatgcaaatattattatagattacaaagaccggtaaccaagatataaatgcataaatggacaaaccattttatttttgttttggaaccttttattt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): ATGCAATATGTGCAGAGATATAAATGCACACATGGACAAATTATTGTTGGAACTCAACTTT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111
lowQualScore : 1 1 5555555555555 1 222 1 22222 11 222222 33333333 11 1 11 222 1 11 222222 1 1 2222 1 2222 11 11 11 2222222222222222222222222222222222222222222222222 1 22222222 111 222222222 11111111111 111 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 22222222 111 33333333 33333333 11111111 1 22 222 11 333333333333333 3333 11111111111 2222222222222 11111111111 1111111 444444444444444444444444444444444444444 11111111 333333333333333333 11111111111111
lowQualScore : 1 1 5 5 0000000000000 5 111 5 1 1 66666 1 88 999999 33333333 1 1 88 1 5 1 77 2 999 1 1 5 1 2 1 22 88 888888 5 1 1 3 0 8888 7 3 7 5555 7 33 0 0 1 11 0 6 99 00 0000000000000000000000000000000000000000000000000 0 1 0 55555555 0 222 1 22 777777777 6 3 6 44444444444 5 3 000 3 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 0 888 55555555 222 00000000 6 0 66666666 9 33333333 5 1 5555 1 888888888 1 55555 4444444 1 2 22 3 333 33 4 3 0 333333333333333 1 0 0000 1 3 0 99999999999 6666666666666 3 44 44 7777 0 1 1 33333333333 1111111 55 99999 1 1 555555555555555555555555555555555555555 00000000 0 5 2 555555555555555555 0 777 00 66666666666666 0 1 5
lowQualScore : . . . . ............. . ... . . . ..... . .. ...... ........ . . .. . . . .. . ... . . . . . . .. .. ...... . . . . . .... . . . .... . .. . . . .. . . .. .. ................................................. . . . ........ . ... . .. ......... . . . ........... . . ... . ...................................................................................................................................... . ... ........ ... ........ . . ........ . ........ . . .... . ......... . ..... ....... . . .. . ... .. . . . ............... . . .... . . . ........... ............. . .. .. .... . . . ........... ....... .. ..... . . ....................................... ........ . . . .................. . ... .. .............. . . .
lowQualScore : 0 0 5 5 0000000000000 0 555 5 0 0 55555 0 00 555555 55555555 0 0 55 0 0 0 55 5 000 0 0 0 0 5 0 00 00 000000 5 0 0 3 7 7777 3 3 3 5555 0 88 8 8 4 00 8 7 22 77 2222222222222222222222222222222222222222222222222 8 4 0 00000000 2 000 0 88 333333333 7 2 7 66666666666 7 0 000 0 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 4 888 44444444 111 88888888 7 8 00000000 2 22222222 2 0 0000 0 000000000 0 00000 7777777 0 0 33 7 333 88 2 2 2 555555555555555 4 8 6666 0 8 1 99999999999 3333333333333 3 66 66 4444 5 0 9 22222222222 8888888 00 11111 0 3 666666666666666666666666666666666666666 22222222 7 7 0 222222222222222222 2 555 44 55555555555555 5 0 7
consensus : TTCAAAGAANGTTCAATCCCCAANGTAATCCATATGTAAAGTTTATTTTCCCAGTTGAAATATGTATTTTAANANATGCCCAGCCTCCAAGTNAAGATAATCTACATGTAATCTGTCAAAGNATGTTCAATNCNCCTTAAGANAATCTGCGTNTCCACGTTGAAATGTATNTTTAANAGAANGTCCCGTCTCCAAGNCGANNTTCATGCANATCTGTCAAAAGAANGTCCNATCT-CGAAG-C-GTATTTAT-ATATTTTAT-AAAATATCTCCATGAAAAAGTTCAAC--CATTATCTCCGAGCTGACGT--ATACATTTTAAAT-ACAAAATTGA--ATATCCAAGTTGAATNATAATATATTTCACAGA-------------AAG---AT------GT----------------T---ATGTATTTAAAAAGTTCAATCTCGAAGTTGAATTATGCATTTCAAAG-AA-G-T-CAATGTTGACGCTCAGCACATCGTTAGCTCGGAGTCAATAC-TA-TG-TATAT-ATGTATATATTG-TTT--TTA-A----AA-AAANGTT---CAATCTCCTAGTTGAATTATGCA---------------AACAATA-TT-TAA-A-T--A-A-AATAACGGTGACCAGGA-TAT-A----C-AT-----ATATG--------TGCAAAGA----------------GACAA----A------------TCAT---TTTTGTTTTG-TTT----GGAACCTA-TTTATTTT--------GA-TAGTCGTTTACGGAGTACTGTCAATAAGCAAAATAGTATTGCTTNGCTTAGTGAAATGNACCGNNNCNCCCNNNNNNNGCGGNCNNNNNGCCTTGGNNNNCGNANCGAAAGT-CACGGC---TGCA--TTTACTACGCCATGGAGGCTGTTGTAACTAGATTGGAGGTATAAATTATGTTTATAAATTAA---TAC--TT-GAAA-------AC----T-ACCGAAAATAGTTC-CAAGATAGCTGGTA-TNTATCTCCGAACTGAATTANAATAATCGGCGATTC------G----GAAC-------TCA--ACT-----GTNGAACT----------------A---TT-----------------TCA-TGG----ACGTCCTTCGGTTTGTGAAAGTTGTTACTATTTATAGAACATC-T-TTTATAGAACATCTATCCTACGAAGCTTCGAAACGCGACT------ACT----AAACCTAGGCAAATNTGCCCAGG-TAAA
Reference ( family-574 ) : TTCAAAGAANGTTCAATCCCCAANGTAATCCATATGTAAAGTTTATTTTCCCAGTTGAAATATGTATTTTAANANATGCCCAGCCTCCAAGTNAAGATAATCTACATGTAATCTGTCAAAGNATGTTCAATNCNCCTTAAGANAATCTGCGTNTCCACGTTGAAGTGTATNTTTAANAGAANGTCCCGTCTCCAAGNCGANNTTCATGCANATCTGTCAAAAGAANGTCCNATCT-CGAAG-C-GTATTTAT-ATATTTTAT-AAAATATCTCCATGAAAAAGTTCAAC--CATTATCTCCGAGCTGACGT--ATACATTTTAAAT-ACAAAATTGA--ATATCCAAGTTGAATNATAATATATTTCACAGA-------------AAG---AT------GT----------------T---ATATATTTAAAAAGTTCAATCTCGAAGTTGAATTATGCATTTCAAAG-AA-G-T-CAGTGTTGACGCTCAGCACANCGTTAGCTCGGAGTCAATAC-TA-TG-TATAT-ATGTATATATTG-TTT--TTA-A----AA-AAANGTT---CAATCTCCTAGTTGAATTATGCA---------------AACAATA-TT-TAA-A-T--A-A-AATAACGGTGACCAGGA-TAT-A----C-AT-----ATATG--------TGCAAAGA----------------GACAA----A------------TCAT---TTTTGTTTTG-TTT----GGAACCTA-TTTATTTT--------GA-TAGTCGTTTACGGAGTACTGTCAATAAGCAAAATAGTATTGCTTNGCTTGGTGAAATGNACCGNNNCNCCCNNNNNNNGCGGNCNNNNNGCCTTGGNNNNCGNANCGAAAGTGCACGGC---TGCA--TCTACTACGCCATGGAGGCTGTTGTAACGAGATTGGAGGTATANATTATGTTTATAAATTAA---TAC--TT-GAAA-------AC----T-ACCGAAAATAGTTC-CAAGATAGCTGGTA-TNTATCTCCGAACTGAATTANAATAATCGGCGATTC------G----GAAC-------TCA--ACT-----GTNGAACT----------------A---TT-----------------TCA-TGG----ACGTCCTTCGGTTTGTGAAAGTTGTTACTATTTATAGAACATC-T-TTTATAGAACATCTATCCTACGAAGCTTCGAAACGCGACT------ACT----AAACCTAGGCAAATNTGCCCAGG-TAAA
gi|1 : AAAAAGTTCAATCCCCAATGTA-TTTAT-TGTAAAGTTTATTTTCCCAGTTGAAATATGTATTTTAAAACATGCTCAATC-----ATAAAGATAATCTACATGTA------TAAAGT-------ATACATCTTAAAAAAATTTG-GTTTCCAAGTTGAAATGTATATTTAAAAGAAAGTCCCATCTTCAAGGCGATCTTCATGTATAT---TTAAAAGAATGTCCCATCTCCAAAG-TGGTATTTAT-GTA-TTTAT----ATGTCACCATGAAAAAGTTAAAC--CATTATACCAGAGCTGATGT--ATAAGTTTTAAAA-ACAATTTTGA--ATATTTAAGTTGAATGATAATATATTTCAAAGAAACCTTTATCTCCAAG---AT------GA----------------C---ATATATTAAAAAAGTTGAATCTCGAAGTTGAATAATGTATTTCAAAGAAA-A-TACAATATTGACGCTCATCACATCGTTAGCTTAGAGTTAAT-C-TGCTG-TATAT-ATGTATATATTG-TTT--TTATATTTTAA-AAATGTTCAACAATCTCCTAGTTGAATTATGCA---------------AACAATA-TTAAAA-A-TGAA-A-AAGAACAGTTGCT--GA-------------------ATATG--------TGCAAAGA----------------AATAACTGCATACATGGATGATTCAT---TTCT-TTTTG--TT----GGAACCTA-TTT
gi|1 : tttA--TCTACTGCGCCATGAAGGCTG-TATAAT--GACT-GAGGTAC-GATTAGGTTTATAAATT-A---TAT--TT-AAAA-------AC----T-ctctctgaatacgatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatggcgacaatctactgcgccatgaaggctgtataatgactgaggtacgattaggtttataaattatatttaaaaacttaatacgcaatgctaattagataacctaatacgtaaagatatgtaattaagaaaagacaaaattaacaaaaaaaaagaaaataccgaacatagttccaagatagcaggtatttatctctgaacagaattaggataaacggcgaatctaatgtagaactattttttcagcggtataattttatggacgttattcggttttgaaagttgttactatttataaaacatatatcgtatgaaactttgtt
gi|1 : tttaaaaagttcaatccccaatgtatttattgtaaagtttattttcccagttgaaatatgtattttaaaacatgctcaatcataaagataatctacatgtataaagtatacatcttaaaaaaatttggtttccaagttgaaatgtatatttaaaagaaagtcccatcttcaaggcgatcttcatgtatatttaaaagaatgtcccatctccaaagtggtatttatgtatttatatgtcaccatgaaaaagttaaaccattataccagagctgatgtataagttttaaaaacaattttgaatatttaagttgaatgataatatatttcaaagaaacctttatctccaagatgacatatattaaaaaagttgaatctcgaagttgaataatgtatttcaaagaaaatacaatattgacgctcatcacatcgttagcttagagttaatctgctgtatatatgtatatattgtttttatattttaaaaatgttcaacaatctcctagttgaattatgcaaacaatattaaaaatgaaaaagaacagttgctgaatatgtgcaaagaaataactgcatacatggatgattcatttctttttgttggaacctatttctctctgaatacgatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatggcgaca-GAAA-------A-----T-ACCGAACATAGTTC-CAAGATAGCAGGTA-TTTATCTCTGAACAGAATTAGGATAAACGGCGAATCTAATGTA----GAACTATTTTTTCA--GCG-----GTATA-------------------A---TT-----------------TTA-TGG----ACGTTATTCGGTTT-TGAAAGTTGTTACTATTTATAAAACATtaatacgcaatgctaattagataacctaatacgtaaagatatgtaattaagaaaagacaaaattaacaaaaaaaaagaaaataccgaacatagttccaagatagcaggtatttatctctgaacagaattaggataaacggcgaatctaatgtagaactattttttcagcggtataattttatggacgttattcggttttgaaagttgttactatttataaaacatatatcgtatgaaactttgtt
gi|10 : tttaaaaagttcaatccccaatgtatttattgtaaagtttattttcccagttgaaatatgtattttaaaacatgctcaatcataaagataatctacatgtataaagtatacatcttaaaaaaatttggtttccaagttgaaatgtatatttaaaagaaagtcccatcttcaaggcgatcttcatgtatatttaaaagaatgtcccatctccaaagtggtatttatgtatttatatgtcaccatgaaaaagttaaaccattataccagagctgatgtataagttttaaaaacaattttgaatatttaagttgaatgataatatatttcaaagaaacctttatctccaagatgacatatattaaaaaagttgaatctcgaagttgaataatgtatttcaaagaaaatacaatattgacgctcatcacatcgttagcttagagttaatctgctgtatatatgtatatattgtttttatattttaaaaatgttcaacaatctcctagttgaattatgcaaacaatattaaaaatgaaaaagaacagttgctgaatatgtgcaaagaaataactgcatacatggatgattcatttctttttgttggaacctatttctctctgaatacgatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatggcgacaatctactgcgccatgaaggctgtataatgactgaggtacgattaggtttataaattatatttaaaaacttaatacgcaatgctaattagataacctaatacgtaaagatatgtaattaagaaaagacaaaattaacaaaaaaaaaATAA--TAA---TAC-------AA-------AG----T-ACCGAAAATAGTTC-CGATATAGCTGATATTGTGTCTCCAAAATGAATTatatcgtatgaaactttgtt
gi|11 : tataattttgttaataaattaatatttaaaatcccgctgggcttatttaattgtgtatagtattactaaacaataagtgattgatcaaagatacaaaaaaaAC-------TCG--ACG-----GTAGA-CT----------------C---TC-----------------ACA-T------ACGTTCTTCGATTTGTGAAAGTTGTTTCTA----------------TTTATAGAATATCTACCCCAGGAAGTTTTGGAATGCG-TT------ACCTGAAAGACCTAGGTAg
gi|12 : ctatttttatcgT-ACAAAATTGA--ATATACAAGTCGAGTTATAATATATTTCACAGA-------------AAG---GT------TTATCTCCCAGATGACAAT---ATGCATTTAAAAAGTTCAATCTCGAAGTTGAATTATGCA
gi|13 : TTTAT-A---T-TCTCCATGAAAAAGTCCAAC--CATTACCTCCC--CTGATGT--ATACATTTTAAAT-ACAAAATTGAATATATCCAATCTGAATG---GTATGTTTCATAGA-------------Aaata
gi|14 : -TTTATCTCCGAGCTGAATTAAAATACTCGGCGAATC------G----G-AC-------ACA--ATT-----GTTGAACT----------------A---TT-----------------TCA-T
gi|15 : -TTTATAGAACATATATCCTACAAAGCTTTAGTATGCAAATTATTTAACT----AAACCTTGGCAAAAGTGCCCAGG-TAAAcagcagtagaaatccatatgcgtgcatcggttt
gi|16 : GA-TAT-AAATGC-AT-----ATATG--------GACAAA--------------------TAT----A------------TCTT---TTTCGTTTTG--TT----GAAACCT--TTTATTTTG-------GA-TAaatgatttttcaa
gi|17 : a------G----GAAC-------TCA--ACT------TTGAACT----------------A---TTTTTTCAGCAGTAGAATTTCA-TAG----ACGTCCTTCGGTtgacaagtcgt
gi|19 : tTCTATCCTATGAAGCTGCGAAACGCCACT------ACT----CAGCCTAGACAAAATTGCCCAGG-TAAAccaactttgaaa
gi|2 : TTCAAAGAATGTTCAATCTCCAAGATAATCCATATGTA-------------CA-TTG---TATATATTT-AACAAATGTCCAGCCTCCAAGTTAAAATAAT--ACATGTAATCTGTCAAAGAATGTTCAATCTTCC--AAGATAATCTACATGT--ACATTG---TATATCTTTAACA-AATGTCCAGTCTCCAAGTTAAAAT--ATGCAG-TCTGTCAAA-GAAAGTTCAATCT-CAAAGAC-GTATCTAT-ACATTTTATGAAAATATCTACAGGAAAATGTTCAACGGCA--ATCTCCCATCTGAGTT--ATACACGTTATAT-ACAAAACTGA--ATATCCAAGCTACATAATAATATATTTCACAGA-------------AAG---AT------GT----------------T---ATGTATTTAAAAAGTTC----TCGAAGTATAATTATCAATTTCAAAG-AATGCT-CAGTGTTGACGCTTAGTACAAC-TTAACTCAGAGTTAATAC-TA-TG-TTTGT-TTGTATAAATTGATTT--TTA-A----AA-AAAGATT---CAGTTGCTTAGTTGAATTATACA---------------AATAATA-TT-TAA-ACT--ACA-GATAACGGTGACCAGGA-GAT-A----C-AT-----GTATG--------TGCAAAGA----------------TACAA----T------------TCAT---TTTTGTTTTG-TTTATATGGAACCCA-TTTATTTC--------GA-TAGTCGTTAATGGCGTACTG-CAA----CAAAACA----TGTTTTGCTTA-TGAAATGAACCTAAACATTCGATTTCTGCGGTCTTCGAACCTTGACCGCCAGAACGAAAAT-CAGGAA---TGCA--TATACTACGCCATGGAGGCTGTTGTAACTA---TGGACGTTTAC-TTATGATTATAAATTAA---TAT--TTTGAAA-------AC----TTACCGACAATAGGTT-CAGAATAGCTGGTA-TATATCTCCAAACTAAATGACAATAATCGGCAATTC------A----GAAC-------TCA--ACT-----GTATAACT----------------A---TT-----------------TCA-T-G----ACGTCCTTCGGTTTATGAAAGTTATTAATATTTATAGAACATCTT-TTTATAGAACATCTTTCCTACGATGCTTCGAAACGCGACA------ACT----AAACCTAGGCAAATGTGCCCAAG-TAAAa
gi|3 : AGTTCAATCTCAAAGTTGAATTATATATTTCAAAG-AG-T-T-CAATTTTGATGTTCAGCACACCGTTAGTTTGGAGTCAATAT-TT-T------T-ATGAATATATTG-TTT--TGA-A----AA-AAAAGTT---CAGTATCTTAGTTGTAGTATGCAAATGATATTAAAGATAACAANN-NN-NNN-N-N--N-N-NNNNNNNNNNNNNNNNN-NNN-N----N-NN-----NNNNNCCAGGTCCTGTAAATG----------------GACAA----A------------TCAA---TTTTGTTTTG-TT-----GGAACC-----TANNNN--------NN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGGCAAAAGTGCATGGC---TGTA--TTTACTATGTCATGGAGGTT-TTG---CTAGATTGAAAGTATA-ATTATGTTCATAAATTAA---TCA--TT-AAAA-------AC----T-
gi|3 : tcaaattcataaaaaaaatctatgtttacactaagaggtttacATAAATCAAATATACAGTA-AAAA-------ACAAGAC-ACCTAAAATAGTTTGTAAG-TAGCTGGTA-T-TACCTCTGAGCAGAATAAGGTTAATCGGCAATTT------G----GAAC-------TCA--ACT-----GTTGAAAT----------------ATTTTT-----------------TCACTGGTAGAACATCCTTCAGTTT-TGAAAGTTGTTACTATTTGTAGAACATT-TATTCCTACAAAATCTtaacccactacgcttatcagataaatgaaaagaacaaataataaatcaaatatacagtaaaaaacaagacacctaaaatagtttgtaagtagctggtattacctctgagcagaataaggttaatcggcaatttggaactcaactgttgaaatattttttcactggtagaacatccttcagttttgaaagttgttactatttgtagaacatttattcctacaaaatcttagacaaatttgccaaagtaaaaactac
gi|4 : tcaaattcataaaaaaaatctatgtttacactaagaggtttacagttcaatctcaaagttgaattatatatttcaaagagttcaattttgatgttcagcacaccgttagtttggagtcaatatttttatgaatatattgttttgaaaaaaaagttcagtatcttagttgtagtatgcaaatgatattaaagataacaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccaggtcctgtaaatggacaaatcaattttgttttgttggaacctannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatggcaaaagtgcatggctgtatttactatgtcatggaggttttgctagattgaaagtataattatgttcataaattaatcattaaaaacttaacccactacgcttatcagataaatgaaaagaacaaataATCT-AGATG-C--T-TTTACCATATTTTAT-AAAATATCTCCCTGAAAAAGTTCAAC--CATTATCTCAGAGCTGACTT--TTACATTTTAAAT-ACATTATTAA--AAAGCCAAATTAAATTATGATATATTTCACAGA-------------AAGTTAATCTCCGAGT----------------TGGCAAATATTTGCAAAGTTCAATCTCGAAGTTGATTTATGCATTTCAAAA-AA-G-T-----GTTGACGCTCAGTACA--------------TCAATATATA-TACTATAC-ATGTATATATTG-TTTATCTA-A----AATAAAGGTT---CAATCTCCGAGTTGAATTATGCA---------------AACAAAAATT-TAA-A------A-AATA----TGAAAAGAACTATTA----CTAG-----ATATG--------TGCAAAGAAATTATTGCATTTATGGACAC----A------------TT-T---TTTTGTTTTA-TT------GAATCTA-TTTAAAAA--------GAACAGTCGTTTACTGAGTACTGT-AATAAACAAAATAATATTGCTTAGCTTAGTGAAATGTACtagacaaatttgccaaagtaaaaactac
gi|4 : A-------AG----T-ACTGAGAATAGTTC-CATGCTAACTGGTT-TATATATCCAAATTAAATTAAAACAATCGGCGATAG------G----GAAC-------TTA--TCT-----ATGGAACT----------------A---TT-----------------TTA--GG----ACGACCTTT-GTTTGT----ATCCTT-CTA-TTA---------------ATAGAACATCAATCATATGAAGCTTCGAAACGCGACT--------T-----AACCGAGGCAAATTGGCCGAGG-TAaataaaatgtttgtcgcccaaacggcggcaatcggcttatcaaataaatgaatacgaaaagaataattaattcatcaaatattctataacaaaattacgaagtactgagaatagttccatgctaactggtttatatatccaaattaaattaaaacaatcggcgatagggaacttatctatggaactattttaggacgacctttgtttgtatccttctattaatagaacatcaatcatatgaagcttcgaaacgcgacttaaccgaggcaaattggccgaggta
gi|5 : atctagatgcttttaccatattttataaaatatctccctgaaaaagttcaaccattatctcagagctgacttttacattttaaatacattattaaaaagccaaattaaattatgatatatttcacagaaagttaatctccgagttggcaaatatttgcaaagttcaatctcgaagttgatttatgcatttcaaaaaagtgttgacgctcagtacatcaatatatatactatacatgtatatattgtttatctaaaataaaggttcaatctccgagttgaattatgcaaacaaaaatttaaaaaatatgaaaagaactattactagatatgtgcaaagaaattattgcatttatggacacatttttttgttttattgaatctatttaaaaagaacagtcgtttactgagtactgtaataaacaaaataatattgcttagcttagtgaaatgtacaataaaatgtttgtcgcccaaacggcggcaatcggcttatcaaataaatgaatacgaaaagaataattaattcatcaaatattctataacaaaattacg-TATATTATGTA---ATTG-TTT--T--------AA-ATACGT----------CCTAGCTGAGTTATGCC---------------TA-AATA-TT-AAAGA-T--A-ACAANNNNNNNNNNNNNNN-NNN-N----N-NN-----NNNNN--------NNNNNNNNNNNNNNNC--------GACAA----A------------TCATGGTTTTTGTTTTG-TT-----GGAATCTAATTTATTTTTTTAATAGGA-TATTCGCTTATGGAGTACTGTCA----GAAAAATAGTATTGCT------GGT-AAATTGGTTGCCCTCCCCTCAAAAAAGAGATAAGTTGCCTTAGAATGTGAACC--AGG---ACGGCCAGTGCAACTTTGCTACGCT-TGCAGA----TG-AATGAGTATGGAAA-ATAA--TAAGTT-ATAAATCAAAGATACAATT-GAAATCAAGTAAG----T-ACCAACACTATTTC-AAAGATAAGTGGT-------CT------TGAACTGGGATTATCGCCTATTC------G----GAAC-------TCATTATTTTTTTGCGGAGAT--------------------TT-----------------TCA-TGG----ACGTCATTCGGTTTGTGAAAGGTGTTACT---CAT------TC-TATTTATAGAACACCTATCCTACAAAGCTT-------------------TT----AAACTTTGGCAAATTTGCCCAGG-TAAA
gi|6 : ATTGTAAGCTCGGAGTCAATA--TA-C--TATAT-ATGTGGTTAATA-TTT--TTA-A----AA-----GTT---CAATCTCCTAGCTGAATTATGCA---------------TA-AATA--T-TA-------A-A-GATAACAAAGACT-GGA-TAT-A----T-ATGCTAAATATC--------TGCAAAGATAGAAATGAATATGTTGACAA----A------------TCAT---TTTTGTTTTA--TT----GGAACTCA-ATTTTTTT--------TA-TAGaatagttctgcaa
gi|6 : agagtATTGTAGGTATAA--TATGTTTATAAATTAA----AC--TT-AATA-------GC----T-Agataaaattcgaacctggattgtccccctggctctatccactgtgttgcctgtgccattatgtaattgtaggtataatatgtttataaattaaacttaatagctagacttgtcagattaataaatacgaaaagaataagttattcatcataaatacaataaaaataatagaaaataccgaaaatagtgccaagatagctggtatttatctccatactgaatttcaataaaagtggattcgtgcaaaaccaaactgttgaattataatttcaggtgtccttcagtttgtgaaagttattactt
gi|6 : agagtattgtaagctcggagtcaatatactatatatgtggttaatatttttaaaagttcaatctcctagctgaattatgcataaatattaaagataacaaagactggatatatatgctaaatatctgcaaagatagaaatgaatatgttgacaaatcatttttgttttattggaactcaattttttttataggataaaattcgaacctggattgtccccctggctctatccactgtgttgcctgtgccattatgtaATAAA--AA---TAA--TA-GAAA-------A-----T-ACCGAAAATAGTGC-CAAGATAGCTGGTA-TTTATCTCCATACTGAATTTCAATAAAAGTGGATTC------GTGCAAAAC-------CAA--ACT-----GTTGAATTATA-------------A---TT-----------------TCA---G----GTGTCCTTCAGTTTGTGAAAGTTATTACTgacttgtcagattaataaatacgaaaagaataagttattcatcataaatacaataaaaataatagaaaataccgaaaatagtgccaagatagctggtatttatctccatactgaatttcaataaaagtggattcgtgcaaaaccaaactgttgaattataatttcaggtgtccttcagtttgtgaaagttattactt
gi|7 : agagtattgtaagctcggagtcaatatactatatatgtggttaatatttttaaaagttcaatctcctagctgaattatgcataaatattaaagataacaaagactggatatatatgctaaatatctgcaaagatagaaatgaatatgttgacaaatcatttttgttttattggaactcaattttttttataggataaaattcgaacctggattgtccccctggctctatccactgtgttgcctgtgccattatgtaattgtaggtataatatgtttataaattaaacttaatagctagacttgtcagattaataaatacgaaaagaataagttattcatcataaatacaT-GAAA-----------------CGAAAATAGTTC-CAGTCTAGTTGGTT-TATATCTCCAAATTAAATGAAAATAATCGGTGTTTC------G----GAAC-------TCA--ATT-----ACGGAACT----------------A---TA-----------------TC--TGA----ACATCCTTCGGTAGTTGAAAGTTGTCACTATTTATAGAACATC-T---------GCA------CTAC---------AAACGCGACT------ACT----TAACCTAGGCAAATATGTCCAGGTTAAAt
gi|8 : tataagtttatttttggaaatttacttacacccgctttgcttatttaataaataattacgacaatgataagccattagtcaaatatacagtatcaaagtagagAA---CAC--TA-GAAA-------G-----T-AC-GGAAATAGTTC----------TG--A-CATATCTCCGAACGGAATTATTATAACCGGT-ATTT------G----GAAC-------TCA--ACT-----GTTGAACTTTTTTTCAGTGGTAGAA---TT-----------------TCA-TGG----AAGTCGTTCTGTTTGTTAAAG--------------AAATTATC-A-TTTATAGAACATCTACCCTACGAAGTTTTTCAACGCAACT------ACT----AAACAACGGCACATCTGCTTAGA-TAAatgactacttggtatttacagcaaaatccactgtaaatgtatccacctttcatttcttacaataacatgtacgtaaattatagttttgttgatttacactaggtaaattgta
gi|9 : ctatccactgtgtcttgcagggttagagttatatgtacgacttataatcatgttaatacatttatctgtaaacttaaccgacagactataattgataactgaatatgaaaaaaataactaataactaaaacataaaacaaaTTATCTCCGAGCTGACGTTAAAAGATT---AATAACAAAATTAC--ATATCCAAGGTGAAT--TAATATAGTTCAcaataggagactcggttttaacggca
gi|9 : ----AA-AAAAGTT---AAATATCTTAGTGGAATTATGCA---------------AATATTA-TTATAG-ATT--ACA-AAGACCGGTAACCAAGA-TAT-A----A-AT-----GCAT------------AAATG----------------GACAA----A------------CCAT---TTTATTTTTGTTTT----GGAACCT--TTTATTTatttttacgcttgacaaactgttaccggtaattaaaattcaattactatataattatgtgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaaaaaagttaaatatcttagtggaattatgcaaatattattatagattacaaagaccggtaaccaagatataaatgcataaatggacaaaccattttatttttgttttggaaccttttattt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): ATGCAATATGTGCAGAGATATAAATGCACACATGGACAAATTATTGTTGGAACTCAACTTT
Alignments
lowQualScore : 1 1 5555555555555 1 222 1 22222 11 222222 33333333 11 1 11 222 1 11 222222 1 1 2222 1 2222 11 11 11 2222222 111 99999999999999999999999999999999999999999999999999999 1 222222 22222 11111111111 111 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 22222222 111 33333333 33333333 11 1 22 222 11 222222222222222 3333 11111111111 2222222222222 11111111111 1111111 444444444444444444444444444444444444444 11111111 333333333333333333 11111111111111
lowQualScore : 1 1 5 5 0000000000000 5 111 5 1 1 66666 1 88 999999 33333333 1 1 88 1 5 1 77 2 111 1 1 5 1 2 1 22 88 888888 5 1 1 3 0 8888 7 3 7 5555 7 33 0 0 1 11 0 6 99 00 1111111 111 88888888888888888888888888888888888888888888888888888 3 1 0 333333 0 0 3 77 1 44 44444 6 3 6 44444444444 5 3 000 3 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 0 888 55555555 222 00000000 6 0 66666666 9 00 5 5 1 5555 1 888888888 1 55555 4444444 1 2 00 3 333 33 1 3 0 777777777777777 1 0 0000 1 3 0 99999999999 6666666666666 3 44 44 7777 0 1 1 33333333333 1111111 55 99999 1 1 555555555555555555555555555555555555555 00000000 0 5 2 555555555555555555 0 777 00 66666666666666 0 1 5
lowQualScore : . . . . ............. . ... . . . ..... . .. ...... ........ . . .. . . . .. . ... . . . . . . .. .. ...... . . . . . .... . . . .... . .. . . . .. . . .. .. ....... ... ..................................................... . . . ...... . . . .. . .. ..... . . . ........... . . ... . ...................................................................................................................................... . ... ........ ... ........ . . ........ . .. . . . .... . ......... . ..... ....... . . .. . ... .. . . . ............... . . .... . . . ........... ............. . .. .. .... . . . ........... ....... .. ..... . . ....................................... ........ . . . .................. . ... .. .............. . . .
lowQualScore : 0 0 5 5 0000000000000 0 555 5 0 0 55555 0 00 555555 55555555 0 0 55 0 0 0 55 5 555 0 0 0 0 5 0 00 00 000000 5 0 0 3 7 7777 3 3 3 5555 0 88 8 8 4 00 8 7 22 77 7777777 777 77777777777777777777777777777777777777777777777777777 5 4 0 888888 8 2 2 88 4 00 33333 7 2 7 66666666666 7 0 000 0 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 4 888 44444444 111 88888888 7 8 00000000 2 22 2 2 0 0000 0 000000000 0 00000 7777777 0 0 77 7 333 88 2 2 2 888888888888888 4 8 4444 0 8 1 99999999999 3333333333333 3 66 66 4444 5 0 9 22222222222 8888888 00 11111 0 3 666666666666666666666666666666666666666 22222222 7 7 0 222222222222222222 2 555 44 55555555555555 5 0 7
consensus : TTCAAAGAANGTTCAATCCCCAANGTAATCCATATGTAAAGTTTATTTTCCCAGTTGAAATATGTATTTTAANANATGCCCAGCCTCCAAGTNAAGATAATCTACATGTAATCTGTCAAAGNATGTTCAATNCNCCTTAAGANAATCTGCGTNTCCACGTTGAAATGTATNTTTAANAGAANGTCCCGTCTCCAAGNCGANNTTCATGCANATCTGTCAAAAGAANGTCCNATCT-CGAAG-C-GTATTTAT-ATATTTTAT-AAAATATCTCCATGAAAAAGTTCAAC--CATTATCTCCGAGCTGACGT--ATACATTTTAAAT-ACAAAATTGA--ATATCCAAGTTGAATNATAATATA-------TTTCACA---GA-------------AAG---AT------GT----------------T---AC--GTATTTAAAAAGTTCAATCTCGAAGTTGAATTATGCATTTCAAAG-AA-G-T-CAATGTTGACGCTCAGCACATCGTTAGCTCGGAGTCAATACTA-TGTATAT-ATGTATATATTG-TTT--TTA-A----AA-AAANGTT---CAATCTCCTAGTTGAATTATGCA---------------AACAATA-TT-TAA-A-T--A-A-AATAACGGTGACCAGGA-TAT-A----C-AT-----ATATG--------TGCAAAGA----------------GACAA----A------------TCAT---TTTTGTTTTG-TTT----GGAACCTA-TTTATTTT--------GA-TAGTCGTTTACGGAGTACTGTCAATAAGCAAAATAGTATTGCTTNGCTTAGTGAAATGNACCGNNNCNCCCNNNNNNNGCGGNCNNNNNGCCTTGGNNNNCGNANCGAAAGT-CACGGC---TGCA--TTTACTACGCCATGGAGGCTGTTGTAACTAGATTGGAGGTATAAATTATGTTTATAAATTAA---TAC--TT-GAAA-------AC----T-ACCGAAAATAGTTC-CAAGATAGCTGGTA-TNTATCTCCGAACTGAATTANAATAATCGGCGATTC------G----GAAC-------TCA--ACT-----GTNGAACT----------------A---TT-----------------TCA-TGG----ACGTCCTTCGGTTTGTGAAAGTTGTTACTATTTATAGAACATC-T-TTTATAGAACATCTATCCTACGAAGCTTCGAAACGCGACT------ACT----AAACCTAGGCAAATNTGCCCAGG-TAAA
Reference ( family-574 ) : TTCAAAGAANGTTCAATCCCCAANGTAATCCATATGTAAAGTTTATTTTCCCAGTTGAAATATGTATTTTAANANATGCCCAGCCTCCAAGTNAAGATAATCTACATGTAATCTGTCAAAGNATGTTCAATNCNCCTTAAGANAATCTGCGTNTCCACGTTGAAATGTATNTTTAANAGAANGTCCCGTCTCCAAGNCGANNTTCATGCANATCTGTCAAAAGAANGTCCNATCT-CGAAG-C-GTATTTAT-ATATTTTAT-AAAATATCTCCATGAAAAAGTTCAAC--CATTATCTCCGAGCTGACGT--ATACATTTTAAAT-ACAAAATTGA--ATATCCAAGTTGAATNATAATATA-------TTTCACA---GA-------------AAG---AT------GT----------------T---AT--GTATTTAAAAAGTTCAATCTCGAAGTTGAATTATGCATTTCAAAG-AA-G-T-CAATGTTGACGCTCAGCACATCGTTAGCTCGGAGTCAATACTA-TGTATAT-ATGTATATATTG-TTT--TTA-A----AA-AAANGTT---CAATCTCCTAGTTGAATTATGCA---------------AACAATA-TT-TAA-A-T--A-A-AATAACGGTGACCAGGA-TAT-A----C-AT-----ATATG--------TGCAAAGA----------------GACAA----A------------TCAT---TTTTGTTTTG-TTT----GGAACCTA-TTTATTTT--------GA-TAGTCGTTTACGGAGTACTGTCAATAAGCAAAATAGTATTGCTTNGCTTAGTGAAATGNACCGNNNCNCCCNNNNNNNGCGGNCNNNNNGCCTTGGNNNNCGNANCGAAAGT-CACGGC---TGCA--TTTACTACGCCATGGAGGCTGTTGTAACTAGATTGGAGGTATAAATTATGTTTATAAATTAA---TAC--TT-GAAA-------AC----T-ACCGAAAATAGTTC-CAAGATAGCTGGTA-TNTATCTCCGAACTGAATTANAATAATCGGCGATTC------G----GAAC-------TCA--ACT-----GTNGAACT----------------A---TT-----------------TCA-TGG----ACGTCCTTCGGTTTGTGAAAGTTGTTACTATTTATAGAACATC-T-TTTATAGAACATCTATCCTACGAAGCTTCGAAACGCGACT------ACT----AAACCTAGGCAAATNTGCCCAGG-TAAA
gi|1 : AAAAAGTTCAATCCCCAATGTA-TTTAT-TGTAAAGTTTATTTTCCCAGTTGAAATATGTATTTTAAAACATGCTCAATC-----ATAAAGATAATCTACATGTA------TAAAGT-------ATACATCTTAAAAAAATTTG-GTTTCCAAGTTGAAATGTATATTTAAAAGAAAGTCCCATCTTCAAGGCGATCTTCATGTATAT---TTAAAAGAATGTCCCATCTCCAAAG-TGGTATTTAT-GTA-TTTAT----ATGTCACCATGAAAAAGTTAAAC--CATTATACCAGAGCTGATGT--ATAAGTTTTAAAA-ACAATTTTGA--ATATTTAAGTTGAATGATAATATA-------TTTCAAA---GAAACCTTTATCTCCAAG---AT------GA----------------C---AT--ATATTAAAAAAGTTGAATCTCGAAGTTGAATAATGTATTTCAAAGAAA-A-TACAATATTGACGCTCATCACATCGTTAGCTTAGAGTTAAT-CTGCTGTATAT-ATGTATATATTG-TTT--TTATATTTTAA-AAATGTTCAACAATCTCCTAGTTGAATTATGCA---------------AACAATA-TTAAAA-A-TGAA-A-AAGAACAGTTGCT--GA-------------------ATATG--------TGCAAAGA----------------AATAACTGCATACATGGATGATTCAT---TTCT-TTTTG--TT----GGAACCTA-TTT
gi|1 : tttA--TCTACTGCGCCATGAAGGCTG-TATAAT--GACT-GAGGTAC-GATTAGGTTTATAAATT-A---TAT--TT-AAAA-------AC----T-ctctctgaatacgatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatggcgacaatctactgcgccatgaaggctgtataatgactgaggtacgattaggtttataaattatatttaaaaacttaatacgcaatgctaattagataacctaatacgtaaagatatgtaattaagaaaagacaaaattaacaaaaaaaaagaaaataccgaacatagttccaagatagcaggtatttatctctgaacagaattaggataaacggcgaatctaatgtagaactattttttcagcggtataattttatggacgttattcggttttgaaagttgttactatttataaaacatatatcgtatgaaactttgtt
gi|1 : tttaaaaagttcaatccccaatgtatttattgtaaagtttattttcccagttgaaatatgtattttaaaacatgctcaatcataaagataatctacatgtataaagtatacatcttaaaaaaatttggtttccaagttgaaatgtatatttaaaagaaagtcccatcttcaaggcgatcttcatgtatatttaaaagaatgtcccatctccaaagtggtatttatgtatttatatgtcaccatgaaaaagttaaaccattataccagagctgatgtataagttttaaaaacaattttgaatatttaagttgaatgataatatatttcaaagaaacctttatctccaagatgacatatattaaaaaagttgaatctcgaagttgaataatgtatttcaaagaaaatacaatattgacgctcatcacatcgttagcttagagttaatctgctgtatatatgtatatattgtttttatattttaaaaatgttcaacaatctcctagttgaattatgcaaacaatattaaaaatgaaaaagaacagttgctgaatatgtgcaaagaaataactgcatacatggatgattcatttctttttgttggaacctatttctctctgaatacgatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatggcgaca-GAAA-------A-----T-ACCGAACATAGTTC-CAAGATAGCAGGTA-TTTATCTCTGAACAGAATTAGGATAAACGGCGAATCTAATGTA----GAACTATTTTTTCA--GCG-----GTATA-------------------A---TT-----------------TTA-TGG----ACGTTATTCGGTTT-TGAAAGTTGTTACTATTTATAAAACATtaatacgcaatgctaattagataacctaatacgtaaagatatgtaattaagaaaagacaaaattaacaaaaaaaaagaaaataccgaacatagttccaagatagcaggtatttatctctgaacagaattaggataaacggcgaatctaatgtagaactattttttcagcggtataattttatggacgttattcggttttgaaagttgttactatttataaaacatatatcgtatgaaactttgtt
gi|10 : tttaaaaagttcaatccccaatgtatttattgtaaagtttattttcccagttgaaatatgtattttaaaacatgctcaatcataaagataatctacatgtataaagtatacatcttaaaaaaatttggtttccaagttgaaatgtatatttaaaagaaagtcccatcttcaaggcgatcttcatgtatatttaaaagaatgtcccatctccaaagtggtatttatgtatttatatgtcaccatgaaaaagttaaaccattataccagagctgatgtataagttttaaaaacaattttgaatatttaagttgaatgataatatatttcaaagaaacctttatctccaagatgacatatattaaaaaagttgaatctcgaagttgaataatgtatttcaaagaaaatacaatattgacgctcatcacatcgttagcttagagttaatctgctgtatatatgtatatattgtttttatattttaaaaatgttcaacaatctcctagttgaattatgcaaacaatattaaaaatgaaaaagaacagttgctgaatatgtgcaaagaaataactgcatacatggatgattcatttctttttgttggaacctatttctctctgaatacgatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatggcgacaatctactgcgccatgaaggctgtataatgactgaggtacgattaggtttataaattatatttaaaaacttaatacgcaatgctaattagataacctaatacgtaaagatatgtaattaagaaaagacaaaattaacaaaaaaaaaATAA--TAA---TAC-------AA-------AG----T-ACCGAAAATAGTTC-CGATATAGCTGATATTGTGTCTCCAAAATGAATTatatcgtatgaaactttgtt
gi|11 : tataattttgttaataaattaatatttaaaatcccgctgggcttatttaattgtgtatagtattactaaacaataagtgattgatcaaagatacaaaaaaaAC-------TCG--ACG-----GTAGA-CT----------------C---TC-----------------ACA-T------ACGTTCTTCGATTTGTGAAAGTTGTTTCTA----------------TTTATAGAATATCTACCCCAGGAAGTTTTGGAATGCG-TT------ACCTGAAAGACCTAGGTAg
gi|12 : ctatttttatcgT-ACAAAATTGA--ATATACAAGTCGAGTTATAATATA-------TTTCACA---GA-------------AAG---GT------TTATCTCCCAGATGACAAT---AT--GCATTTAAAAAGTTCAATCTCGAAGTTGAATTATGCA
gi|13 : TTTAT-A---T-TCTCCATGAAAAAGTCCAAC--CATTACCTCCC--CTGATGT--ATACATTTTAAAT-ACAAAATTGAATATATCCAATCTGAATG---GTATG-------TTTCATA---GA-------------Aaata
gi|14 : -TTTATCTCCGAGCTGAATTAAAATACTCGGCGAATC------G----G-AC-------ACA--ATT-----GTTGAACT----------------A---TT-----------------TCA-T
gi|15 : -TTTATAGAACATATATCCTACAAAGCTTTAGTATGCAAATTATTTAACT----AAACCTTGGCAAAAGTGCCCAGG-TAAAcagcagtagaaatccatatgcgtgcatcggttt
gi|16 : GA-TAT-AAATGC-AT-----ATATG--------GACAAA--------------------TAT----A------------TCTT---TTTCGTTTTG--TT----GAAACCT--TTTATTTTG-------GA-TAaatgatttttcaa
gi|17 : a------G----GAAC-------TCA--ACT------TTGAACT----------------A---TTTTTTCAGCAGTAGAATTTCA-TAG----ACGTCCTTCGGTtgacaagtcgt
gi|19 : tTCTATCCTATGAAGCTGCGAAACGCCACT------ACT----CAGCCTAGACAAAATTGCCCAGG-TAAAccaactttgaaa
gi|2 : TTCAAAGAATGTTCAATCTCCAAGATAATCCATATGTA-------------CA-TTG---TATATATTT-AACAAATGTCCAGCCTCCAAGTTAAAATAAT--ACATGTAATCTGTCAAAGAATGTTCAATCTTCC--AAGATAATCTACATGT--ACATTG---TATATCTTTAACA-AATGTCCAGTCTCCAAGTTAAAAT--ATGCAG-TCTGTCAAA-GAAAGTTCAATCT-CAAAGAC-GTATCTAT-ACATTTTATGAAAATATCTACAGGAAAATGTTCAACGGCA--ATCTCCCATCTGAGTT--ATACACGTTATAT-ACAAAACTGA--ATATCCAAGCTACATAATAATATA-------TTTCACA---GA-------------AAG---AT------GT----------------T---AT--GTATTTAAAAAGTTC----TCGAAGTATAATTATCAATTTCAAAG-AATGCT-CAGTGTTGACGCTTAGTACAAC-TTAACTCAGAGTTAATACTA-TGTTTGT-TTGTATAAATTGATTT--TTA-A----AA-AAAGATT---CAGTTGCTTAGTTGAATTATACA---------------AATAATA-TT-TAA-ACT--ACA-GATAACGGTGACCAGGA-GAT-A----C-AT-----GTATG--------TGCAAAGA----------------TACAA----T------------TCAT---TTTTGTTTTG-TTTATATGGAACCCA-TTTATTTC--------GA-TAGTCGTTAATGGCGTACTG-CAA----CAAAACA----TGTTTTGCTTA-TGAAATGAACCTAAACATTCGATTTCTGCGGTCTTCGAACCTTGACCGCCAGAACGAAAAT-CAGGAA---TGCA--TATACTACGCCATGGAGGCTGTTGTAACTA---TGGACGTTTAC-TTATGATTATAAATTAA---TAT--TTTGAAA-------AC----TTACCGACAATAGGTT-CAGAATAGCTGGTA-TATATCTCCAAACTAAATGACAATAATCGGCAATTC------A----GAAC-------TCA--ACT-----GTATAACT----------------A---TT-----------------TCA-T-G----ACGTCCTTCGGTTTATGAAAGTTATTAATATTTATAGAACATCTT-TTTATAGAACATCTTTCCTACGATGCTTCGAAACGCGACA------ACT----AAACCTAGGCAAATGTGCCCAAG-TAAAa
gi|3 : AGTTCAATCTCAAAGTTGAATTATATATTTCAAAG-AG-T-T-CAATTTTGATGTTCAGCACACCGTTAGTTTGGAGTCAATATTT-T-----T-ATGAATATATTG-TTT--TGA-A----AA-AAAAGTT---CAGTATCTTAGTTGTAGTATGCAAATGATATTAAAGATAACAANN-NN-NNN-N-N--N-N-NNNNNNNNNNNNNNNNN-NNN-N----N-NN-----NNNNNCCAGGTCCTGTAAATG----------------GACAA----A------------TCAA---TTTTGTTTTG-TT-----GGAACC-----TANNNN--------NN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGGCAAAAGTGCATGGC---TGTA--TTTACTATGTCATGGAGGTT-TTG---CTAGATTGAAAGTAT-AATTATGTTCATAAATTAA---TCA--TT-AAAA-------AC----T-
gi|3 : tcaaattcataaaaaaaatctatgtttacactaagaggtttacATAAATCAAATATACAGTA-AAAA-------ACAAGAC-ACCTAAAATAGTTTGTAAG-TAGCTGGTA-T-TACCTCTGAGCAGAATAAGGTTAATCGGCAATTT------G----GAAC-------TCA--ACT-----GTTGAAAT----------------ATTTTT-----------------TCACTGGTAGAACATCCTTCAGTTT-TGAAAGTTGTTACTATTTGTAGAACATT-TATTCCTACAAAATCTtaacccactacgcttatcagataaatgaaaagaacaaataataaatcaaatatacagtaaaaaacaagacacctaaaatagtttgtaagtagctggtattacctctgagcagaataaggttaatcggcaatttggaactcaactgttgaaatattttttcactggtagaacatccttcagttttgaaagttgttactatttgtagaacatttattcctacaaaatcttagacaaatttgccaaagtaaaaactac
gi|4 : tcaaattcataaaaaaaatctatgtttacactaagaggtttacagttcaatctcaaagttgaattatatatttcaaagagttcaattttgatgttcagcacaccgttagtttggagtcaatatttttatgaatatattgttttgaaaaaaaagttcagtatcttagttgtagtatgcaaatgatattaaagataacaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccaggtcctgtaaatggacaaatcaattttgttttgttggaacctannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatggcaaaagtgcatggctgtatttactatgtcatggaggttttgctagattgaaagtataattatgttcataaattaatcattaaaaacttaacccactacgcttatcagataaatgaaaagaacaaataATCT-AGATG-C--T-TTTACCATATTTTAT-AAAATATCTCCCTGAAAAAGTTCAAC--CATTATCTCAGAGCTGACTT--TTACATTTTAAAT-ACATTATTAA--AAAGCCAAATTAAATTATGATATA-------TTTCACA---GA-------------AAGTTAATCTCCGAGT----------------TGGCAA--ATATTTGCAAAGTTCAATCTCGAAGTTGATTTATGCATTTCAAAA-AA-G-T-----GTTGACGCTCAGTACATCAATATAT--------ATACTA-T----AC-ATGTATATATTG-TTTATCTA-A----AATAAAGGTT---CAATCTCCGAGTTGAATTATGCA---------------AACAAAAATT-TAA-A------A-AATA----TGAAAAGAACTATTA----CTAG-----ATATG--------TGCAAAGAAATTATTGCATTTATGGACAC----A------------TT-T---TTTTGTTTTA-TT------GAATCTA-TTTAAAAA--------GAACAGTCGTTTACTGAGTACTGT-AATAAACAAAATAATATTGCTTAGCTTAGTGAAATGTACtagacaaatttgccaaagtaaaaactac
gi|4 : A-------AG----T-ACTGAGAATAGTTC-CATGCTAACTGGTT-TATATATCCAAATTAAATTAAAACAATCGGCGATAG------G----GAAC-------TTA--TCT-----ATGGAACT----------------A---TT-----------------TTA--GG----ACGACCTTT-GTTTGT----ATCCTT-CTA-TTA---------------ATAGAACATCAATCATATGAAGCTTCGAAACGCGACT--------T-----AACCGAGGCAAATTGGCCGAGG-TAaataaaatgtttgtcgcccaaacggcggcaatcggcttatcaaataaatgaatacgaaaagaataattaattcatcaaatattctataacaaaattacgaagtactgagaatagttccatgctaactggtttatatatccaaattaaattaaaacaatcggcgatagggaacttatctatggaactattttaggacgacctttgtttgtatccttctattaatagaacatcaatcatatgaagcttcgaaacgcgacttaaccgaggcaaattggccgaggta
gi|5 : atctagatgcttttaccatattttataaaatatctccctgaaaaagttcaaccattatctcagagctgacttttacattttaaatacattattaaaaagccaaattaaattatgatatatttcacagaaagttaatctccgagttggcaaatatttgcaaagttcaatctcgaagttgatttatgcatttcaaaaaagtgttgacgctcagtacatcaatatatatactatacatgtatatattgtttatctaaaataaaggttcaatctccgagttgaattatgcaaacaaaaatttaaaaaatatgaaaagaactattactagatatgtgcaaagaaattattgcatttatggacacatttttttgttttattgaatctatttaaaaagaacagtcgtttactgagtactgtaataaacaaaataatattgcttagcttagtgaaatgtacaataaaatgtttgtcgcccaaacggcggcaatcggcttatcaaataaatgaatacgaaaagaataattaattcatcaaatattctataacaaaattacgTATATTATGTA---ATTG-TTT--T--------AA-ATACGT----------CCTAGCTGAGTTATGCC---------------TA-AATA-TT-AAAGA-T--A-ACAANNNNNNNNNNNNNNN-NNN-N----N-NN-----NNNNN--------NNNNNNNNNNNNNNNC--------GACAA----A------------TCATGGTTTTTGTTTTG-TT-----GGAATCTAATTTATTTTTTTAATAGGA-TATTCGCTTATGGAGTACTGTCA----GAAAAATAGTATTGCT------GGT-AAATTGGTTGCCCTCCCCTCAAAAAAGAGATAAGTTGCCTTAGAATGTGAACC--AGG---ACGGCCAGTGCAACTTTGCTACGCT-TGCAGA----TG-AATGAGTATGGAAA-ATAA--TAAGTT-ATAAATCAAAGATACAATT-GAAATCAAGTAAG----T-ACCAACACTATTTC-AAAGATAAGTGGT-------CT------TGAACTGGGATTATCGCCTATTC------G----GAAC-------TCATTATTTTTTTGCGGAGAT--------------------TT-----------------TCA-TGG----ACGTCATTCGGTTTGTGAAAGGTGTTACT---CAT------TC-TATTTATAGAACACCTATCCTACAAAGCTT-------------------TT----AAACTTTGGCAAATTTGCCCAGG-TAAA
gi|6 : ATTGTAAGCTCGGAGTCAATA-TA-C-TATAT-ATGTGGTTAATA-TTT--TTA-A----AA-----GTT---CAATCTCCTAGCTGAATTATGCA---------------TA-AATA--T-TA-------A-A-GATAACAAAGACT-GGA-TAT-A----T-ATGCTAAATATC--------TGCAAAGATAGAAATGAATATGTTGACAA----A------------TCAT---TTTTGTTTTA--TT----GGAACTCA-ATTTTTTT--------TA-TAGaatagttctgcaa
gi|6 : agagtATTGTAGGTATAA--TATGTTTATAAATTAA----AC--TT-AATA-------GC----T-Agataaaattcgaacctggattgtccccctggctctatccactgtgttgcctgtgccattatgtaattgtaggtataatatgtttataaattaaacttaatagctagacttgtcagattaataaatacgaaaagaataagttattcatcataaatacaataaaaataatagaaaataccgaaaatagtgccaagatagctggtatttatctccatactgaatttcaataaaagtggattcgtgcaaaaccaaactgttgaattataatttcaggtgtccttcagtttgtgaaagttattactt
gi|6 : agagtattgtaagctcggagtcaatatactatatatgtggttaatatttttaaaagttcaatctcctagctgaattatgcataaatattaaagataacaaagactggatatatatgctaaatatctgcaaagatagaaatgaatatgttgacaaatcatttttgttttattggaactcaattttttttataggataaaattcgaacctggattgtccccctggctctatccactgtgttgcctgtgccattatgtaATAAA--AA---TAA--TA-GAAA-------A-----T-ACCGAAAATAGTGC-CAAGATAGCTGGTA-TTTATCTCCATACTGAATTTCAATAAAAGTGGATTC------GTGCAAAAC-------CAA--ACT-----GTTGAATTATA-------------A---TT-----------------TCA---G----GTGTCCTTCAGTTTGTGAAAGTTATTACTgacttgtcagattaataaatacgaaaagaataagttattcatcataaatacaataaaaataatagaaaataccgaaaatagtgccaagatagctggtatttatctccatactgaatttcaataaaagtggattcgtgcaaaaccaaactgttgaattataatttcaggtgtccttcagtttgtgaaagttattactt
gi|7 : agagtattgtaagctcggagtcaatatactatatatgtggttaatatttttaaaagttcaatctcctagctgaattatgcataaatattaaagataacaaagactggatatatatgctaaatatctgcaaagatagaaatgaatatgttgacaaatcatttttgttttattggaactcaattttttttataggataaaattcgaacctggattgtccccctggctctatccactgtgttgcctgtgccattatgtaattgtaggtataatatgtttataaattaaacttaatagctagacttgtcagattaataaatacgaaaagaataagttattcatcataaatacaT-GAAA-----------------CGAAAATAGTTC-CAGTCTAGTTGGTT-TATATCTCCAAATTAAATGAAAATAATCGGTGTTTC------G----GAAC-------TCA--ATT-----ACGGAACT----------------A---TA-----------------TC--TGA----ACATCCTTCGGTAGTTGAAAGTTGTCACTATTTATAGAACATC-T---------GCA------CTAC---------AAACGCGACT------ACT----TAACCTAGGCAAATATGTCCAGGTTAAAt
gi|8 : tataagtttatttttggaaatttacttacacccgctttgcttatttaataaataattacgacaatgataagccattagtcaaatatacagtatcaaagtagagAA---CAC--TA-GAAA-------G-----T-AC-GGAAATAGTTC----------TG--A-CATATCTCCGAACGGAATTATTATAACCGGT-ATTT------G----GAAC-------TCA--ACT-----GTTGAACTTTTTTTCAGTGGTAGAA---TT-----------------TCA-TGG----AAGTCGTTCTGTTTGTTAAAG--------------AAATTATC-A-TTTATAGAACATCTACCCTACGAAGTTTTTCAACGCAACT------ACT----AAACAACGGCACATCTGCTTAGA-TAAatgactacttggtatttacagcaaaatccactgtaaatgtatccacctttcatttcttacaataacatgtacgtaaattatagttttgttgatttacactaggtaaattgta
gi|9 : ctatccactgtgtcttgcagggttagagttatatgtacgacttataatcatgttaatacatttatctgtaaacttaaccgacagactataattgataactgaatatgaaaaaaataactaataactaaaacataaaacaaaTTATCTCCGAGCTGACGTTAAAAGATT---AATAACAAAATTAC--ATATCCAAGGTGAAT--TAATATAGTTCAATTTTTACGCTTGAC------------AAA---CT------GT----------------T---ACCGGTAATTAAAA--TTCAATTACTATAT--AATTATGcaataggagactcggttttaacggca
gi|9 : ----AA-AAAAGTT---AAATATCTTAGTGGAATTATGCA---------------AATATTA-TTATAG-ATT--ACA-AAGACCGGTAACCAAGA-TAT-A----A-AT-----GCAT------------AAATG----------------GACAA----A------------CCAT---TTTATTTTTGTTTT----GGAACCT--TTTATTTtgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaaaaaagttaaatatcttagtggaattatgcaaatattattatagattacaaagaccggtaaccaagatataaatgcataaatggacaaaccattttatttttgttttggaaccttttattt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): ATGCAATATGTGCAGAGATATAAATGCACACATGGACAAATTATTGTTGGAACTCAACTTT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 5555555555555 1 222 1 22222 11 222222 33333333 11 1 11 222 1 11 222222 1 1 2222 1 2222 11 11 11 2222222 111 00000000000000000000000000000000000000000000000000000 1 222222 22222 11111111111 111 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 22222222 111 33333333 33333333 11 1 22 222 11 222222222222222 3333 11111111111 2222222222222 11111111111 1111111 444444444444444444444444444444444444444 11111111 333333333333333333 11111111111111
lowQualScore : 1 1 5 5 0000000000000 5 111 5 1 1 66666 1 88 999999 33333333 1 1 88 1 5 1 77 2 111 1 1 5 1 2 1 22 88 888888 5 1 1 3 0 8888 7 3 7 5555 7 33 0 0 1 11 0 6 99 00 1111111 111 44444444444444444444444444444444444444444444444444444 3 1 0 333333 0 0 3 77 1 44 44444 6 3 6 44444444444 5 3 000 3 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 0 888 55555555 222 00000000 6 0 66666666 9 00 5 5 1 5555 1 888888888 1 55555 4444444 1 2 00 3 333 33 1 3 0 777777777777777 1 0 0000 1 3 0 99999999999 6666666666666 3 44 44 7777 0 1 1 33333333333 1111111 55 99999 1 1 555555555555555555555555555555555555555 00000000 0 5 2 555555555555555555 0 777 00 66666666666666 0 1 5
lowQualScore : . . . . ............. . ... . . . ..... . .. ...... ........ . . .. . . . .. . ... . . . . . . .. .. ...... . . . . . .... . . . .... . .. . . . .. . . .. .. ....... ... ..................................................... . . . ...... . . . .. . .. ..... . . . ........... . . ... . ...................................................................................................................................... . ... ........ ... ........ . . ........ . .. . . . .... . ......... . ..... ....... . . .. . ... .. . . . ............... . . .... . . . ........... ............. . .. .. .... . . . ........... ....... .. ..... . . ....................................... ........ . . . .................. . ... .. .............. . . .
lowQualScore : 0 0 5 5 0000000000000 0 555 5 0 0 55555 0 00 555555 55555555 0 0 55 0 0 0 55 5 555 0 0 0 0 5 0 00 00 000000 5 0 0 3 7 7777 3 3 3 5555 0 88 8 8 4 00 8 7 22 77 7777777 777 11111111111111111111111111111111111111111111111111111 5 4 0 888888 8 2 2 88 4 00 33333 7 2 7 66666666666 7 0 000 0 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 4 888 44444444 111 88888888 7 8 00000000 2 22 2 2 0 0000 0 000000000 0 00000 7777777 0 0 77 7 333 88 2 2 2 888888888888888 4 8 4444 0 8 1 99999999999 3333333333333 3 66 66 4444 5 0 9 22222222222 8888888 00 11111 0 3 666666666666666666666666666666666666666 22222222 7 7 0 222222222222222222 2 555 44 55555555555555 5 0 7
consensus : TTCAAAGAANGTTCAATCCCCAANGTAATCCATATGTAAAGTTTATTTTCCCAGTTGAAATATGTATTTTAANANATGCCCAGCCTCCAAGTNAAGATAATCTACATGTAATCTGTCAAAGNATGTTCAATNCNCCTTAAGANAATCTGCGTNTCCACGTTGAAATGTATNTTTAANAGAANGTCCCGTCTCCAAGNCGANNTTCATGCANATCTGTCAAAAGAANGTCCNATCT-CGAAG-C-GTATTTAT-ATATTTTAT-AAAATATCTCCATGAAAAAGTTCAAC--CATTATCTCCGAGCTGACGT--ATACATTTTAAAT-ACAAAATTGA--ATATCCAAGTTGAATNATAATATA-------TTTCACA---GA-------------AAG---AT------GT----------------T---AC--GTATTTAAAAAGTTCAATCTCGAAGTTGAATTATGCATTTCAAAG-AA-G-T-CAATGTTGACGCTCAGCACATCGTTAGCTCGGAGTCAATACTA-TGTATAT-ATGTATATATTG-TTT--TTA-A----AA-AAANGTT---CAATCTCCTAGTTGAATTATGCA---------------AACAATA-TT-TAA-A-T--A-A-AATAACGGTGACCAGGA-TAT-A----C-AT-----ATATG--------TGCAAAGA----------------GACAA----A------------TCAT---TTTTGTTTTG-TTT----GGAACCTA-TTTATTTT--------GA-TAGTCGTTTACGGAGTACTGTCAATAAGCAAAATAGTATTGCTTNGCTTAGTGAAATGNACCGNNNCNCCCNNNNNNNGCGGNCNNNNNGCCTTGGNNNNCGNANCGAAAGT-CACGGC---TGCA--TTTACTACGCCATGGAGGCTGTTGTAACTAGATTGGAGGTATAAATTATGTTTATAAATTAA---TAC--TT-GAAA-------AC----T-ACCGAAAATAGTTC-CAAGATAGCTGGTA-TNTATCTCCGAACTGAATTANAATAATCGGCGATTC------G----GAAC-------TCA--ACT-----GTNGAACT----------------A---TT-----------------TCA-TGG----ACGTCCTTCGGTTTGTGAAAGTTGTTACTATTTATAGAACATC-T-TTTATAGAACATCTATCCTACGAAGCTTCGAAACGCGACT------ACT----AAACCTAGGCAAATNTGCCCAGG-TAAA
Reference ( family-574 ) : TTCAAAGAANGTTCAATCCCCAANGTAATCCATATGTAAAGTTTATTTTCCCAGTTGAAATATGTATTTTAANANATGCCCAGCCTCCAAGTNAAGATAATCTACATGTAATCTGTCAAAGNATGTTCAATNCNCCTTAAGANAATCTGCGTNTCCACGTTGAAATGTATNTTTAANAGAANGTCCCGTCTCCAAGNCGANNTTCATGCANATCTGTCAAAAGAANGTCCNATCT-CGAAG-C-GTATTTAT-ATATTTTAT-AAAATATCTCCATGAAAAAGTTCAAC--CATTATCTCCGAGCTGACGT--ATACATTTTAAAT-ACAAAATTGA--ATATCCAAGTTGAATNATAATATA-------TTTCACA---GA-------------AAG---AT------GT----------------T---AC--GTATTTAAAAAGTTCAATCTCGAAGTTGAATTATGCATTTCAAAG-AA-G-T-CAATGTTGACGCTCAGCACATCGTTAGCTCGGAGTCAATACTA-TGTATAT-ATGTATATATTG-TTT--TTA-A----AA-AAANGTT---CAATCTCCTAGTTGAATTATGCA---------------AACAATA-TT-TAA-A-T--A-A-AATAACGGTGACCAGGA-TAT-A----C-AT-----ATATG--------TGCAAAGA----------------GACAA----A------------TCAT---TTTTGTTTTG-TTT----GGAACCTA-TTTATTTT--------GA-TAGTCGTTTACGGAGTACTGTCAATAAGCAAAATAGTATTGCTTNGCTTAGTGAAATGNACCGNNNCNCCCNNNNNNNGCGGNCNNNNNGCCTTGGNNNNCGNANCGAAAGT-CACGGC---TGCA--TTTACTACGCCATGGAGGCTGTTGTAACTAGATTGGAGGTATAAATTATGTTTATAAATTAA---TAC--TT-GAAA-------AC----T-ACCGAAAATAGTTC-CAAGATAGCTGGTA-TNTATCTCCGAACTGAATTANAATAATCGGCGATTC------G----GAAC-------TCA--ACT-----GTNGAACT----------------A---TT-----------------TCA-TGG----ACGTCCTTCGGTTTGTGAAAGTTGTTACTATTTATAGAACATC-T-TTTATAGAACATCTATCCTACGAAGCTTCGAAACGCGACT------ACT----AAACCTAGGCAAATNTGCCCAGG-TAAA
gi|1 : AAAAAGTTCAATCCCCAATGTA-TTTAT-TGTAAAGTTTATTTTCCCAGTTGAAATATGTATTTTAAAACATGCTCAATC-----ATAAAGATAATCTACATGTA------TAAAGT-------ATACATCTTAAAAAAATTTG-GTTTCCAAGTTGAAATGTATATTTAAAAGAAAGTCCCATCTTCAAGGCGATCTTCATGTATAT---TTAAAAGAATGTCCCATCTCCAAAG-TGGTATTTAT-GTA-TTTAT----ATGTCACCATGAAAAAGTTAAAC--CATTATACCAGAGCTGATGT--ATAAGTTTTAAAA-ACAATTTTGA--ATATTTAAGTTGAATGATAATATA-------TTTCAAA---GAAACCTTTATCTCCAAG---AT------GA----------------C---AT--ATATTAAAAAAGTTGAATCTCGAAGTTGAATAATGTATTTCAAAGAAA-A-TACAATATTGACGCTCATCACATCGTTAGCTTAGAGTTAAT-CTGCTGTATAT-ATGTATATATTG-TTT--TTATATTTTAA-AAATGTTCAACAATCTCCTAGTTGAATTATGCA---------------AACAATA-TTAAAA-A-TGAA-A-AAGAACAGTTGCT--GA-------------------ATATG--------TGCAAAGA----------------AATAACTGCATACATGGATGATTCAT---TTCT-TTTTG--TT----GGAACCTA-TTT
gi|1 : tttA--TCTACTGCGCCATGAAGGCTG-TATAAT--GACT-GAGGTAC-GATTAGGTTTATAAATT-A---TAT--TT-AAAA-------AC----T-ctctctgaatacgatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatggcgacaatctactgcgccatgaaggctgtataatgactgaggtacgattaggtttataaattatatttaaaaacttaatacgcaatgctaattagataacctaatacgtaaagatatgtaattaagaaaagacaaaattaacaaaaaaaaagaaaataccgaacatagttccaagatagcaggtatttatctctgaacagaattaggataaacggcgaatctaatgtagaactattttttcagcggtataattttatggacgttattcggttttgaaagttgttactatttataaaacatatatcgtatgaaactttgtt
gi|1 : tttaaaaagttcaatccccaatgtatttattgtaaagtttattttcccagttgaaatatgtattttaaaacatgctcaatcataaagataatctacatgtataaagtatacatcttaaaaaaatttggtttccaagttgaaatgtatatttaaaagaaagtcccatcttcaaggcgatcttcatgtatatttaaaagaatgtcccatctccaaagtggtatttatgtatttatatgtcaccatgaaaaagttaaaccattataccagagctgatgtataagttttaaaaacaattttgaatatttaagttgaatgataatatatttcaaagaaacctttatctccaagatgacatatattaaaaaagttgaatctcgaagttgaataatgtatttcaaagaaaatacaatattgacgctcatcacatcgttagcttagagttaatctgctgtatatatgtatatattgtttttatattttaaaaatgttcaacaatctcctagttgaattatgcaaacaatattaaaaatgaaaaagaacagttgctgaatatgtgcaaagaaataactgcatacatggatgattcatttctttttgttggaacctatttctctctgaatacgatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatggcgaca-GAAA-------A-----T-ACCGAACATAGTTC-CAAGATAGCAGGTA-TTTATCTCTGAACAGAATTAGGATAAACGGCGAATCTAATGTA----GAACTATTTTTTCA--GCG-----GTATA-------------------A---TT-----------------TTA-TGG----ACGTTATTCGGTTT-TGAAAGTTGTTACTATTTATAAAACATtaatacgcaatgctaattagataacctaatacgtaaagatatgtaattaagaaaagacaaaattaacaaaaaaaaagaaaataccgaacatagttccaagatagcaggtatttatctctgaacagaattaggataaacggcgaatctaatgtagaactattttttcagcggtataattttatggacgttattcggttttgaaagttgttactatttataaaacatatatcgtatgaaactttgtt
gi|10 : tttaaaaagttcaatccccaatgtatttattgtaaagtttattttcccagttgaaatatgtattttaaaacatgctcaatcataaagataatctacatgtataaagtatacatcttaaaaaaatttggtttccaagttgaaatgtatatttaaaagaaagtcccatcttcaaggcgatcttcatgtatatttaaaagaatgtcccatctccaaagtggtatttatgtatttatatgtcaccatgaaaaagttaaaccattataccagagctgatgtataagttttaaaaacaattttgaatatttaagttgaatgataatatatttcaaagaaacctttatctccaagatgacatatattaaaaaagttgaatctcgaagttgaataatgtatttcaaagaaaatacaatattgacgctcatcacatcgttagcttagagttaatctgctgtatatatgtatatattgtttttatattttaaaaatgttcaacaatctcctagttgaattatgcaaacaatattaaaaatgaaaaagaacagttgctgaatatgtgcaaagaaataactgcatacatggatgattcatttctttttgttggaacctatttctctctgaatacgatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatggcgacaatctactgcgccatgaaggctgtataatgactgaggtacgattaggtttataaattatatttaaaaacttaatacgcaatgctaattagataacctaatacgtaaagatatgtaattaagaaaagacaaaattaacaaaaaaaaaATAA--TAA---TAC-------AA-------AG----T-ACCGAAAATAGTTC-CGATATAGCTGATATTGTGTCTCCAAAATGAATTatatcgtatgaaactttgtt
gi|11 : tataattttgttaataaattaatatttaaaatcccgctgggcttatttaattgtgtatagtattactaaacaataagtgattgatcaaagatacaaaaaaaAC-------TCG--ACG-----GTAGA-CT----------------C---TC-----------------ACA-T------ACGTTCTTCGATTTGTGAAAGTTGTTTCTA----------------TTTATAGAATATCTACCCCAGGAAGTTTTGGAATGCG-TT------ACCTGAAAGACCTAGGTAg
gi|12 : ctatttttatcgT-ACAAAATTGA--ATATACAAGTCGAGTTATAATATA-------TTTCACA---GA-------------AAG---GT------TTATCTCCCAGATGACAAT---AT--GCATTTAAAAAGTTCAATCTCGAAGTTGAATTATGCA
gi|13 : TTTAT-A---T-TCTCCATGAAAAAGTCCAAC--CATTACCTCCC--CTGATGT--ATACATTTTAAAT-ACAAAATTGAATATATCCAATCTGAATG---GTATG-------TTTCATA---GA-------------Aaata
gi|14 : -TTTATCTCCGAGCTGAATTAAAATACTCGGCGAATC------G----G-AC-------ACA--ATT-----GTTGAACT----------------A---TT-----------------TCA-T
gi|15 : -TTTATAGAACATATATCCTACAAAGCTTTAGTATGCAAATTATTTAACT----AAACCTTGGCAAAAGTGCCCAGG-TAAAcagcagtagaaatccatatgcgtgcatcggttt
gi|16 : GA-TAT-AAATGC-AT-----ATATG--------GACAAA--------------------TAT----A------------TCTT---TTTCGTTTTG--TT----GAAACCT--TTTATTTTG-------GA-TAaatgatttttcaa
gi|17 : a------G----GAAC-------TCA--ACT------TTGAACT----------------A---TTTTTTCAGCAGTAGAATTTCA-TAG----ACGTCCTTCGGTtgacaagtcgt
gi|19 : tTCTATCCTATGAAGCTGCGAAACGCCACT------ACT----CAGCCTAGACAAAATTGCCCAGG-TAAAccaactttgaaa
gi|2 : TTCAAAGAATGTTCAATCTCCAAGATAATCCATATGTA-------------CA-TTG---TATATATTT-AACAAATGTCCAGCCTCCAAGTTAAAATAAT--ACATGTAATCTGTCAAAGAATGTTCAATCTTCC--AAGATAATCTACATGT--ACATTG---TATATCTTTAACA-AATGTCCAGTCTCCAAGTTAAAAT--ATGCAG-TCTGTCAAA-GAAAGTTCAATCT-CAAAGAC-GTATCTAT-ACATTTTATGAAAATATCTACAGGAAAATGTTCAACGGCA--ATCTCCCATCTGAGTT--ATACACGTTATAT-ACAAAACTGA--ATATCCAAGCTACATAATAATATA-------TTTCACA---GA-------------AAG---AT------GT----------------T---AT--GTATTTAAAAAGTTC----TCGAAGTATAATTATCAATTTCAAAG-AATGCT-CAGTGTTGACGCTTAGTACAAC-TTAACTCAGAGTTAATACTA-TGTTTGT-TTGTATAAATTGATTT--TTA-A----AA-AAAGATT---CAGTTGCTTAGTTGAATTATACA---------------AATAATA-TT-TAA-ACT--ACA-GATAACGGTGACCAGGA-GAT-A----C-AT-----GTATG--------TGCAAAGA----------------TACAA----T------------TCAT---TTTTGTTTTG-TTTATATGGAACCCA-TTTATTTC--------GA-TAGTCGTTAATGGCGTACTG-CAA----CAAAACA----TGTTTTGCTTA-TGAAATGAACCTAAACATTCGATTTCTGCGGTCTTCGAACCTTGACCGCCAGAACGAAAAT-CAGGAA---TGCA--TATACTACGCCATGGAGGCTGTTGTAACTA---TGGACGTTTAC-TTATGATTATAAATTAA---TAT--TTTGAAA-------AC----TTACCGACAATAGGTT-CAGAATAGCTGGTA-TATATCTCCAAACTAAATGACAATAATCGGCAATTC------A----GAAC-------TCA--ACT-----GTATAACT----------------A---TT-----------------TCA-T-G----ACGTCCTTCGGTTTATGAAAGTTATTAATATTTATAGAACATCTT-TTTATAGAACATCTTTCCTACGATGCTTCGAAACGCGACA------ACT----AAACCTAGGCAAATGTGCCCAAG-TAAAa
gi|3 : AGTTCAATCTCAAAGTTGAATTATATATTTCAAAG-AG-T-T-CAATTTTGATGTTCAGCACACCGTTAGTTTGGAGTCAATATTT-T-----T-ATGAATATATTG-TTT--TGA-A----AA-AAAAGTT---CAGTATCTTAGTTGTAGTATGCAAATGATATTAAAGATAACAANN-NN-NNN-N-N--N-N-NNNNNNNNNNNNNNNNN-NNN-N----N-NN-----NNNNNCCAGGTCCTGTAAATG----------------GACAA----A------------TCAA---TTTTGTTTTG-TT-----GGAACC-----TANNNN--------NN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGGCAAAAGTGCATGGC---TGTA--TTTACTATGTCATGGAGGTT-TTG---CTAGATTGAAAGTAT-AATTATGTTCATAAATTAA---TCA--TT-AAAA-------AC----T-
gi|3 : tcaaattcataaaaaaaatctatgtttacactaagaggtttacATAAATCAAATATACAGTA-AAAA-------ACAAGAC-ACCTAAAATAGTTTGTAAG-TAGCTGGTA-T-TACCTCTGAGCAGAATAAGGTTAATCGGCAATTT------G----GAAC-------TCA--ACT-----GTTGAAAT----------------ATTTTT-----------------TCACTGGTAGAACATCCTTCAGTTT-TGAAAGTTGTTACTATTTGTAGAACATT-TATTCCTACAAAATCTtaacccactacgcttatcagataaatgaaaagaacaaataataaatcaaatatacagtaaaaaacaagacacctaaaatagtttgtaagtagctggtattacctctgagcagaataaggttaatcggcaatttggaactcaactgttgaaatattttttcactggtagaacatccttcagttttgaaagttgttactatttgtagaacatttattcctacaaaatcttagacaaatttgccaaagtaaaaactac
gi|4 : tcaaattcataaaaaaaatctatgtttacactaagaggtttacagttcaatctcaaagttgaattatatatttcaaagagttcaattttgatgttcagcacaccgttagtttggagtcaatatttttatgaatatattgttttgaaaaaaaagttcagtatcttagttgtagtatgcaaatgatattaaagataacaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccaggtcctgtaaatggacaaatcaattttgttttgttggaacctannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatggcaaaagtgcatggctgtatttactatgtcatggaggttttgctagattgaaagtataattatgttcataaattaatcattaaaaacttaacccactacgcttatcagataaatgaaaagaacaaataATCT-AGATG-C--T-TTTACCATATTTTAT-AAAATATCTCCCTGAAAAAGTTCAAC--CATTATCTCAGAGCTGACTT--TTACATTTTAAAT-ACATTATTAA--AAAGCCAAATTAAATTATGATATA-------TTTCACA---GA-------------AAGTTAATCTCCGAGT----------------TGGCAA--ATATTTGCAAAGTTCAATCTCGAAGTTGATTTATGCATTTCAAAA-AA-G-T-----GTTGACGCTCAGTACATCAATATAT--------ATACTA-T----AC-ATGTATATATTG-TTTATCTA-A----AATAAAGGTT---CAATCTCCGAGTTGAATTATGCA---------------AACAAAAATT-TAA-A------A-AATA----TGAAAAGAACTATTA----CTAG-----ATATG--------TGCAAAGAAATTATTGCATTTATGGACAC----A------------TT-T---TTTTGTTTTA-TT------GAATCTA-TTTAAAAA--------GAACAGTCGTTTACTGAGTACTGT-AATAAACAAAATAATATTGCTTAGCTTAGTGAAATGTACtagacaaatttgccaaagtaaaaactac
gi|4 : A-------AG----T-ACTGAGAATAGTTC-CATGCTAACTGGTT-TATATATCCAAATTAAATTAAAACAATCGGCGATAG------G----GAAC-------TTA--TCT-----ATGGAACT----------------A---TT-----------------TTA--GG----ACGACCTTT-GTTTGT----ATCCTT-CTA-TTA---------------ATAGAACATCAATCATATGAAGCTTCGAAACGCGACT--------T-----AACCGAGGCAAATTGGCCGAGG-TAaataaaatgtttgtcgcccaaacggcggcaatcggcttatcaaataaatgaatacgaaaagaataattaattcatcaaatattctataacaaaattacgaagtactgagaatagttccatgctaactggtttatatatccaaattaaattaaaacaatcggcgatagggaacttatctatggaactattttaggacgacctttgtttgtatccttctattaatagaacatcaatcatatgaagcttcgaaacgcgacttaaccgaggcaaattggccgaggta
gi|5 : atctagatgcttttaccatattttataaaatatctccctgaaaaagttcaaccattatctcagagctgacttttacattttaaatacattattaaaaagccaaattaaattatgatatatttcacagaaagttaatctccgagttggcaaatatttgcaaagttcaatctcgaagttgatttatgcatttcaaaaaagtgttgacgctcagtacatcaatatatatactatacatgtatatattgtttatctaaaataaaggttcaatctccgagttgaattatgcaaacaaaaatttaaaaaatatgaaaagaactattactagatatgtgcaaagaaattattgcatttatggacacatttttttgttttattgaatctatttaaaaagaacagtcgtttactgagtactgtaataaacaaaataatattgcttagcttagtgaaatgtacaataaaatgtttgtcgcccaaacggcggcaatcggcttatcaaataaatgaatacgaaaagaataattaattcatcaaatattctataacaaaattacgTATATTATGTA---ATTG-TTT--T--------AA-ATACGT----------CCTAGCTGAGTTATGCC---------------TA-AATA-TT-AAAGA-T--A-ACAANNNNNNNNNNNNNNN-NNN-N----N-NN-----NNNNN--------NNNNNNNNNNNNNNNC--------GACAA----A------------TCATGGTTTTTGTTTTG-TT-----GGAATCTAATTTATTTTTTTAATAGGA-TATTCGCTTATGGAGTACTGTCA----GAAAAATAGTATTGCT------GGT-AAATTGGTTGCCCTCCCCTCAAAAAAGAGATAAGTTGCCTTAGAATGTGAACC--AGG---ACGGCCAGTGCAACTTTGCTACGCT-TGCAGA----TG-AATGAGTATGGAAA-ATAA--TAAGTT-ATAAATCAAAGATACAATT-GAAATCAAGTAAG----T-ACCAACACTATTTC-AAAGATAAGTGGT-------CT------TGAACTGGGATTATCGCCTATTC------G----GAAC-------TCATTATTTTTTTGCGGAGAT--------------------TT-----------------TCA-TGG----ACGTCATTCGGTTTGTGAAAGGTGTTACT---CAT------TC-TATTTATAGAACACCTATCCTACAAAGCTT-------------------TT----AAACTTTGGCAAATTTGCCCAGG-TAAA
gi|6 : ATTGTAAGCTCGGAGTCAATA-TA-C-TATAT-ATGTGGTTAATA-TTT--TTA-A----AA-----GTT---CAATCTCCTAGCTGAATTATGCA---------------TA-AATA--T-TA-------A-A-GATAACAAAGACT-GGA-TAT-A----T-ATGCTAAATATC--------TGCAAAGATAGAAATGAATATGTTGACAA----A------------TCAT---TTTTGTTTTA--TT----GGAACTCA-ATTTTTTT--------TA-TAGaatagttctgcaa
gi|6 : agagtATTGTAGGTATAA--TATGTTTATAAATTAA----AC--TT-AATA-------GC----T-Agataaaattcgaacctggattgtccccctggctctatccactgtgttgcctgtgccattatgtaattgtaggtataatatgtttataaattaaacttaatagctagacttgtcagattaataaatacgaaaagaataagttattcatcataaatacaataaaaataatagaaaataccgaaaatagtgccaagatagctggtatttatctccatactgaatttcaataaaagtggattcgtgcaaaaccaaactgttgaattataatttcaggtgtccttcagtttgtgaaagttattactt
gi|6 : agagtattgtaagctcggagtcaatatactatatatgtggttaatatttttaaaagttcaatctcctagctgaattatgcataaatattaaagataacaaagactggatatatatgctaaatatctgcaaagatagaaatgaatatgttgacaaatcatttttgttttattggaactcaattttttttataggataaaattcgaacctggattgtccccctggctctatccactgtgttgcctgtgccattatgtaATAAA--AA---TAA--TA-GAAA-------A-----T-ACCGAAAATAGTGC-CAAGATAGCTGGTA-TTTATCTCCATACTGAATTTCAATAAAAGTGGATTC------GTGCAAAAC-------CAA--ACT-----GTTGAATTATA-------------A---TT-----------------TCA---G----GTGTCCTTCAGTTTGTGAAAGTTATTACTgacttgtcagattaataaatacgaaaagaataagttattcatcataaatacaataaaaataatagaaaataccgaaaatagtgccaagatagctggtatttatctccatactgaatttcaataaaagtggattcgtgcaaaaccaaactgttgaattataatttcaggtgtccttcagtttgtgaaagttattactt
gi|7 : agagtattgtaagctcggagtcaatatactatatatgtggttaatatttttaaaagttcaatctcctagctgaattatgcataaatattaaagataacaaagactggatatatatgctaaatatctgcaaagatagaaatgaatatgttgacaaatcatttttgttttattggaactcaattttttttataggataaaattcgaacctggattgtccccctggctctatccactgtgttgcctgtgccattatgtaattgtaggtataatatgtttataaattaaacttaatagctagacttgtcagattaataaatacgaaaagaataagttattcatcataaatacaT-GAAA-----------------CGAAAATAGTTC-CAGTCTAGTTGGTT-TATATCTCCAAATTAAATGAAAATAATCGGTGTTTC------G----GAAC-------TCA--ATT-----ACGGAACT----------------A---TA-----------------TC--TGA----ACATCCTTCGGTAGTTGAAAGTTGTCACTATTTATAGAACATC-T---------GCA------CTAC---------AAACGCGACT------ACT----TAACCTAGGCAAATATGTCCAGGTTAAAt
gi|8 : tataagtttatttttggaaatttacttacacccgctttgcttatttaataaataattacgacaatgataagccattagtcaaatatacagtatcaaagtagagAA---CAC--TA-GAAA-------G-----T-AC-GGAAATAGTTC----------TG--A-CATATCTCCGAACGGAATTATTATAACCGGT-ATTT------G----GAAC-------TCA--ACT-----GTTGAACTTTTTTTCAGTGGTAGAA---TT-----------------TCA-TGG----AAGTCGTTCTGTTTGTTAAAG--------------AAATTATC-A-TTTATAGAACATCTACCCTACGAAGTTTTTCAACGCAACT------ACT----AAACAACGGCACATCTGCTTAGA-TAAatgactacttggtatttacagcaaaatccactgtaaatgtatccacctttcatttcttacaataacatgtacgtaaattatagttttgttgatttacactaggtaaattgta
gi|9 : ctatccactgtgtcttgcagggttagagttatatgtacgacttataatcatgttaatacatttatctgtaaacttaaccgacagactataattgataactgaatatgaaaaaaataactaataactaaaacataaaacaaaTTATCTCCGAGCTGACGTTAAAAGATT---AATAACAAAATTAC--ATATCCAAGGTGAAT--TAATATAGTTCAATTTTTACGCTTGAC------------AAA---CT------GT----------------T---ACCGGTAATTAAAA--TTCAATTACTATAT--AATTATGcaataggagactcggttttaacggca
gi|9 : ----AA-AAAAGTT---AAATATCTTAGTGGAATTATGCA---------------AATATTA-TTATAG-ATT--ACA-AAGACCGGTAACCAAGA-TAT-A----A-AT-----GCAT------------AAATG----------------GACAA----A------------CCAT---TTTATTTTTGTTTT----GGAACCT--TTTATTTtgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaaaaaagttaaatatcttagtggaattatgcaaatattattatagattacaaagaccggtaaccaagatataaatgcataaatggacaaaccattttatttttgttttggaaccttttattt
blockSeqs : T G A A . . . . C A TCCAA T . ATCTGT AATGTTCA C T . T C G . C . C C . T A T AA . GTCTG . A A . ACG A C T GAAA A GG T TA A AT TA GTTCAAT CTT AAGGTTTATCTCCCAGATGACAATAT T C . TGCTC G CA T AC TGTT T T A ATCTAA T G . T AATGATATTAAAGATAACAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGGTCCTGTAAATGGACAAA GGT TTTATAT TAA TTTAATAG A NNNNNNNN N NN N N N NNNN N NNNNNNNNN N NNNNN NNNNNAT G A TG T CAG AC A A CTGTTGTAACTA C ACT T T ATATACAGTA TCAAGTAAG T GT TA ATTG A G GTGCA . TT TTTTT A A ATTTTTTCAGCAGTAGAATT CTGGTAGA G T ATTTATAGAACATCTTT TAG TATTTAACTA T T
blockSeqs : . C . . T AAA A . G . . . AA . . AAGTTAATCTCCGAGTTGGCAA A A . TTC A TG C AT CTA . T . TTAA . A . A TAAATATTAAAGATAACAAAGACTGGATATATATGCTAAATATCTGCAAAGATAGAAATGAATATGTTGACAAA . TTTT CA . . TAATAAA A TA G G T GCCC C TCAAAAAAG A AAGTT AATGTGA C . . C . . T A TTTTGCTAGAT A AAT T C AGATACAATT ACAAGA . C AA ATA C A G . . . T A TTTTTTCAGTGGTAGAATT TAG A A ATTTGTAGAACATTTAT CGA ACTC G .
blockSeqs : A . . C . . . TA . . CAAACTGTTACCG T T . GT G CG C AC T . T . TGAA . G . C AACAAAAATTTAAAAAATATGAAAAGAACTATTACTAGATATGTGCAAAGAAATTATTGCATTTATGGACACA . TT TA . . TCAG G . G . G . T . TGAATGAGTA A AA A T TATTTT AG . C GC TTA G A G . . . T A ATTTTT TGG G A ATTTATAGAACATCT CGA ACTA T .
blockSeqs : C . . . G . . AAGATGTTAT T C . . . A T . G . TTAA . C . C TAAATATTAAAGATAACAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGACAAA . TT CA . . G AA T . TCATT AC . C GA ATT A G A . . . A A ATAATT TGA G A AAATTATCAT CGA ACTT T .
blockSeqs : . . . . . . . . . T . A . A AATAATATTTAAACTACAGATAACGGTGACCAGGAGATACATGTATGTGCAAAGATACAAT . TT T . . TAATA AC . A GA TTA G T G . . . T A CTC TGG G A CATTCTAT TTC ACTA A .
blockSeqs : . . . . AATATTATTATAGATTACAAAGACCGGTAACCAAGATATAAATGCATAAATGGACAAA . TT T CACTA AG . C TC ACA C G G . . . G G ATT TG T A ATTA A TTA C .
blockSeqs : . TT . ACTT GC . C G AT A G G . . . G A ATT GG G . . T
blockSeqs : TAC A . . . . T . G . . . T A ATT T . .
blockSeqs : A . G . . . G A ATA G
blockSeqs : G . . . . T . TT
blockSeqs : . .
blockSeqCons : AC T**** TTAA******* *** ******** AA** G********** ******* ATTTATAGAACATCTAT* ACTN**********
originalCons : TTCAAAGAANGTTCAATCCCCAANGTAATCCATATGTAAAGTTTATTTTCCCAGTTGAAATATGTATTTTAANANATGCCCAGCCTCCAAGTNAAGATAATCTACATGTAATCTGTCAAAGNATGTTCAATNCNCCTTAAGANAATCTGCGTNTCCACGTTGAAATGTATNTTTAANAGAANGTCCCGTCTCCAAGNCGANNTTCATGCANATCTGTCAAAAGAANGTCCNATCT-CGAAG-C-GTATTTAT-ATATTTTAT-AAAATATCTCCATGAAAAAGTTCAAC--CATTATCTCCGAGCTGACGT--ATACATTTTAAAT-ACAAAATTGA--ATATCCAAGTTGAATNATAATATA-------TTTCACA---GA-------------AAG---AT------GT----------------T---AC--GTATTTAAAAAGTTCAATCTCGAAGTTGAATTATGCATTTCAAAG-AA-G-T-CAATGTTGACGCTCAGCACATCGTTAGCTCGGAGTCAATACTA-TGTATAT-ATGTATATATTG-TTT--TTA-A----AA-AAANGTT---CAATCTCCTAGTTGAATTATGCA---------------AACAATA-TT-TAA-A-T--A-A-AATAACGGTGACCAGGA-TAT-A----C-AT-----ATATG--------TGCAAAGA----------------GACAA----A------------TCAT---TTTTGTTTTG-TTT----GGAACCTA-TTTATTTT--------GA-TAGTCGTTTACGGAGTACTGTCAATAAGCAAAATAGTATTGCTTNGCTTAGTGAAATGNACCGNNNCNCCCNNNNNNNGCGGNCNNNNNGCCTTGGNNNNCGNANCGAAAGT-CACGGC---TGCA--TTTACTACGCCATGGAGGCTGTTGTAACTAGATTGGAGGTATAAATTATGTTTATAAATTAA---TAC--TT-GAAA-------AC----T-ACCGAAAATAGTTC-CAAGATAGCTGGTA-TNTATCTCCGAACTGAATTANAATAATCGGCGATTC------G----GAAC-------TCA--ACT-----GTNGAACT----------------A---TT-----------------TCA-TGG----ACGTCCTTCGGTTTGTGAAAGTTGTTACTATTTATAGAACATC-T-TTTATAGAACATCTATCCTACGAAGCTTCGAAACGCGACT------ACT----AAACCTAGGCAAATNTGCCCAGG-TAAA
finalCons : TTCAAAGAANGTTCAATCCCCAANGTAATCCATATGTAAAGTTTATTTTCCCAGTTGAAATATGTATTTTAANANATGCCCAGCCTCCAAGTNAAGATAATCTACATGTAATCTGTCAAAGNATGTTCAATNCNCCTTAAGANAATCTGCGTNTCCACGTTGAAATGTATNTTTAANAGAANGTCCCGTCTCCAAGNCGANNTTCATGCANATCTGTCAAAAGAANGTCCNATCT-CGAAG-C-GTATTTAT-ATATTTTAT-AAAATATCTCCATGAAAAAGTTCAAC--CATTATCTCCGAGCTGACGT--ATACATTTTAAAT-ACAAAATTGA--ATATCCAAGTTGAATNATAATATA-------TTTCACA---GA-------------AAG---AT------GT----------------T---AC--GTATTTAAAAAGTTCAATCTCGAAGTTGAATTATGCATTTCAAAG-AA-G-T-CAATGTTGACGCTCAGCACATCGTTAGCTCGGAGTCAATACTAT----TAT-ATGTATATATTG-TTTTTAA-------AA-AAANGTT---CAATCTCCTAGTTGAATTATGCA---------------AACAATA-TT-TAA-A-T--A-A-AATAACGGTGACCAGGA-TAT-A----C-AT-----ATATG--------TGCAAAGA----------------GACAA----A------------TCAT---TTTTGTTTTG-TTT----GGAACCTA-TTTATTTT--------GA-TAGTCGTTTACGGAGTACTGTCAATAAGCAAAATAGTATTGCTTNGCTTAGTGAAATGNACCGNNNCNCCCNNNNNNNGCGGNCNNNNNGCCTTGGNNNNCGNANCGAAAGT-CACGGC---TGCA--TTTACTACGCCATGGAGGCTGTTGTAACTAGATTGGAGGTATAA--TATGTTTATAAATTAA---TAC--TT-GAAA-------AC----T-ACCGAAAATAGTTC-CAAGATAGCTGGTA-TNTATCTCCGAACTGAATTANAATAATCGGCGATTCG----------GAAC-------TCA--ACT-----GTNGAACT----------------A---TT-----------------TCA-TGG----ACGTCCTTCGGTTTGTGAAAGTTGTTACTATTTATAGAACATCTAT-TTATAGAACATCTATCCTACGAAGCTTCGAAACGCGACTACTN----------AACCTAGGCAAATNTGCCCAGG-TAAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): ATGCAATATGTGCAGAGATATAAATGCACACATGGACAAATTATTGTTGGAACTCAACTTT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 5555555555555 1 222 1 22222 11 222222 33333333 11 1 11 222 1 11 222222 1 1 2222 1 2222 11 11 11 2222222 111 00000000000000000000000000000000000000000000000000000 1 222222 11 11111 11111111111 111 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 22222222 111 33333333 33333333 11 1 22 222 11 222222222222222 1 2222222222222222222222222222 11111111111 1111111 444444444444444444444444444444444444444 11111111 33333333333 2222222222
lowQualScore : 1 1 5 5 0000000000000 5 111 5 1 1 66666 1 88 999999 33333333 1 1 88 1 5 1 77 2 111 1 1 5 1 2 1 22 88 888888 5 1 1 3 0 8888 7 3 7 5555 7 33 0 0 1 11 0 6 99 00 1111111 111 44444444444444444444444444444444444444444444444444444 3 1 0 333333 0 0 3 77 1 11 3 3 99999 1 99 6 6 44444444444 5 3 000 3 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 0 888 55555555 222 00000000 6 0 66666666 9 00 5 5 1 5555 1 888888888 1 55555 4444444 1 2 00 3 333 33 1 3 0 777777777777777 1 0 3 6 1 33 6666666666666666666666666666 3 44 44 7777 0 1 1 33333333333 1111111 55 99999 1 1 555555555555555555555555555555555555555 00000000 0 5 1 1 00000000000 0 4 0 777 2222222222 5 1 888 0 1 5
lowQualScore : . . . . ............. . ... . . . ..... . .. ...... ........ . . .. . . . .. . ... . . . . . . .. .. ...... . . . . . .... . . . .... . .. . . . .. . . .. .. ....... ... ..................................................... . . . ...... . . . .. . .. . . ..... . .. . . ........... . . ... . ...................................................................................................................................... . ... ........ ... ........ . . ........ . .. . . . .... . ......... . ..... ....... . . .. . ... .. . . . ............... . . . . . .. ............................ . .. .. .... . . . ........... ....... .. ..... . . ....................................... ........ . . . . ........... . . . ... .......... . . ... . . .
lowQualScore : 0 0 5 5 0000000000000 0 555 5 0 0 55555 0 00 555555 55555555 0 0 55 0 0 0 55 5 555 0 0 0 0 5 0 00 00 000000 5 0 0 3 7 7777 3 3 3 5555 0 88 8 8 4 00 8 7 22 77 7777777 777 11111111111111111111111111111111111111111111111111111 5 4 0 888888 8 2 2 88 4 00 2 8 22222 0 22 7 7 66666666666 7 0 000 0 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 4 888 44444444 111 88888888 7 8 00000000 2 22 2 2 0 0000 0 000000000 0 00000 7777777 0 0 77 7 333 88 2 2 2 888888888888888 4 8 3 7 7 77 4444444444444444444444444444 3 66 66 4444 5 0 9 22222222222 8888888 00 11111 0 3 666666666666666666666666666666666666666 22222222 7 7 8 8 11111111111 4 4 2 555 5555555555 0 0 888 5 0 7
consensus : TTCAAAGAANGTTCAATCCCCAANGTAATCCATATGTAAAGTTTATTTTCCCAGTTGAAATATGTATTTTAANANATGCCCAGCCTCCAAGTNAAGATAATCTACATGTAATCTGTCAAAGNATGTTCAATNCNCCTTAAGANAATCTGCGTNTCCACGTTGAAATGTATNTTTAANAGAANGTCCCGTCTCCAAGNCGANNTTCATGCANATCTGTCAAAAGAANGTCCNATCT-CGAAG-C-GTATTTAT-ATATTTTAT-AAAATATCTCCATGAAAAAGTTCAAC--CATTATCTCCGAGCTGACGT--ATACATTTTAAAT-ACAAAATTGA--ATATCCAAGTTGAATNATAATATA-------TTTCACA---GA-------------AAG---AT------GT----------------T---AC--GTATTTAAAAAGTTCAATCTCGAAGTTGAATTATGCATTTCAAAG-AA-G-T-CAATGTTGACGCTCAGCACATCGTTAGCTCGGAGTCAA--TACTAT---TATATGTATA--TA-TTG-TTT--TTA-A----AA-AAANGTT---CAATCTCCTAGTTGAATTATGCA---------------AACAATA-TT-TAA-A-T--A-A-AATAACGGTGACCAGGA-TAT-A----C-AT-----ATATG--------TGCAAAGA----------------GACAA----A------------TCAT---TTTTGTTTTG-TTT----GGAACCTA-TTTATTTT--------GA-TAGTCGTTTACGGAGTACTGTCAATAAGCAAAATAGTATTGCTTNGCTTAGTGAAATGNACCGNNNCNCCCNNNNNNNGCGGNCNNNNNGCCTTGGNNNNCGNANCGAAAGT-CACGGC---TGCA--TTTACTACGCCATGGAGGCTGTTGTAACTAGATTGGAGGTATAA-T-ATGTTTATAAATTAA---TAC--TT-GAAA-------AC----T-ACCGAAAATAGTTC-CAAGATAGCTGGTA-TNTATCTCCGAACTGAATTANAATAATCGGCGATTC------G----GAAC-------TCA--ACT-----GTNGAACT----------------A---TT-----------------TCA-TGG----ACGTCCTTCGGTTTGTGAAAGTTGTTACTATTTATAGAACATCTATT-TATAGAACATCTATCCTACGAAGCTTCGAAACGCGACT------A-CTNA---ACCTAGGCAAATNTGCCCAGG-TAAA
Reference ( family-574 ) : TTCAAAGAANGTTCAATCCCCAANGTAATCCATATGTAAAGTTTATTTTCCCAGTTGAAATATGTATTTTAANANATGCCCAGCCTCCAAGTNAAGATAATCTACATGTAATCTGTCAAAGNATGTTCAATNCNCCTTAAGANAATCTGCGTNTCCACGTTGAAATGTATNTTTAANAGAANGTCCCGTCTCCAAGNCGANNTTCATGCANATCTGTCAAAAGAANGTCCNATCT-CGAAG-C-GTATTTAT-ATATTTTAT-AAAATATCTCCATGAAAAAGTTCAAC--CATTATCTCCGAGCTGACGT--ATACATTTTAAAT-ACAAAATTGA--ATATCCAAGTTGAATNATAATATA-------TTTCACA---GA-------------AAG---AT------GT----------------T---AC--GTATTTAAAAAGTTCAATCTCGAAGTTGAATTATGCATTTCAAAG-AA-G-T-CAATGTTGACGCTCAGCACATCGTTAGCTCGGAGTCAA--TACTAT---TATATGTATA--TA-TTG-TTT--TTA-A----AA-AAANGTT---CAATCTCCTAGTTGAATTATGCA---------------AACAATA-TT-TAA-A-T--A-A-AATAACGGTGACCAGGA-TAT-A----C-AT-----ATATG--------TGCAAAGA----------------GACAA----A------------TCAT---TTTTGTTTTG-TTT----GGAACCTA-TTTATTTT--------GA-TAGTCGTTTACGGAGTACTGTCAATAAGCAAAATAGTATTGCTTNGCTTAGTGAAATGNACCGNNNCNCCCNNNNNNNGCGGNCNNNNNGCCTTGGNNNNCGNANCGAAAGT-CACGGC---TGCA--TTTACTACGCCATGGAGGCTGTTGTAACTAGATTGGAGGTATAA-T-ATGTTTATAAATTAA---TAC--TT-GAAA-------AC----T-ACCGAAAATAGTTC-CAAGATAGCTGGTA-TNTATCTCCGAACTGAATTANAATAATCGGCGATTC------G----GAAC-------TCA--ACT-----GTNGAACT----------------A---TT-----------------TCA-TGG----ACGTCCTTCGGTTTGTGAAAGTTGTTACTATTTATAGAACATCTATT-TATAGAACATCTATCCTACGAAGCTTCGAAACGCGACT------A-CTNA---ACCTAGGCAAATNTGCCCAGG-TAAA
gi|1 : AAAAAGTTCAATCCCCAATGTA-TTTAT-TGTAAAGTTTATTTTCCCAGTTGAAATATGTATTTTAAAACATGCTCAATC-----ATAAAGATAATCTACATGTA------TAAAGT-------ATACATCTTAAAAAAATTTG-GTTTCCAAGTTGAAATGTATATTTAAAAGAAAGTCCCATCTTCAAGGCGATCTTCATGTATAT---TTAAAAGAATGTCCCATCTCCAAAG-TGGTATTTAT-GTA-TTTAT----ATGTCACCATGAAAAAGTTAAAC--CATTATACCAGAGCTGATGT--ATAAGTTTTAAAA-ACAATTTTGA--ATATTTAAGTTGAATGATAATATA-------TTTCAAA---GAAACCTTTATCTCCAAG---AT------GA----------------C---AT--ATATTAAAAAAGTTGAATCTCGAAGTTGAATAATGTATTTCAAAGAAA-A-TACAATATTGACGCTCATCACATCGTTAGCTTAGAGTTAATCTGCTGTA--TATATGTATA--TA-TTG-TTT--TTATATTTTAA-AAATGTTCAACAATCTCCTAGTTGAATTATGCA---------------AACAATA-TTAAAA-A-TGAA-A-AAGAACAGTTGCT--GA-------------------ATATG--------TGCAAAGA----------------AATAACTGCATACATGGATGATTCAT---TTCT-TTTTG--TT----GGAACCTA-TTT
gi|1 : tttA--TCTACTGCGCCATGAAGGCTG-TATAAT--GACT-GAGGTACGATT-AGGTTTATAAATT-A---TAT--TT-AAAA-------AC----T-ctctctgaatacgatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatggcgacaatctactgcgccatgaaggctgtataatgactgaggtacgattaggtttataaattatatttaaaaacttaatacgcaatgctaattagataacctaatacgtaaagatatgtaattaagaaaagacaaaattaacaaaaaaaaagaaaataccgaacatagttccaagatagcaggtatttatctctgaacagaattaggataaacggcgaatctaatgtagaactattttttcagcggtataattttatggacgttattcggttttgaaagttgttactatttataaaacatatatcgtatgaaactttgtt
gi|1 : tttaaaaagttcaatccccaatgtatttattgtaaagtttattttcccagttgaaatatgtattttaaaacatgctcaatcataaagataatctacatgtataaagtatacatcttaaaaaaatttggtttccaagttgaaatgtatatttaaaagaaagtcccatcttcaaggcgatcttcatgtatatttaaaagaatgtcccatctccaaagtggtatttatgtatttatatgtcaccatgaaaaagttaaaccattataccagagctgatgtataagttttaaaaacaattttgaatatttaagttgaatgataatatatttcaaagaaacctttatctccaagatgacatatattaaaaaagttgaatctcgaagttgaataatgtatttcaaagaaaatacaatattgacgctcatcacatcgttagcttagagttaatctgctgtatatatgtatatattgtttttatattttaaaaatgttcaacaatctcctagttgaattatgcaaacaatattaaaaatgaaaaagaacagttgctgaatatgtgcaaagaaataactgcatacatggatgattcatttctttttgttggaacctatttctctctgaatacgatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatggcgaca-GAAA-------A-----T-ACCGAACATAGTTC-CAAGATAGCAGGTA-TTTATCTCTGAACAGAATTAGGATAAACGGCGAATCTAATGTA----GAACTATTTTTTCA--GCG-----GTATA-------------------A---TT-----------------TTA-TGG----ACGTTATTCGGTTT-TGAAAGTTGTTACTATTTATAAAACATATATCGTATGAAACtaatacgcaatgctaattagataacctaatacgtaaagatatgtaattaagaaaagacaaaattaacaaaaaaaaagaaaataccgaacatagttccaagatagcaggtatttatctctgaacagaattaggataaacggcgaatctaatgtagaactattttttcagcggtataattttatggacgttattcggttttgaaagttgttactatttataaaacatatatcgtatgaaactttgtt
gi|10 : tttaaaaagttcaatccccaatgtatttattgtaaagtttattttcccagttgaaatatgtattttaaaacatgctcaatcataaagataatctacatgtataaagtatacatcttaaaaaaatttggtttccaagttgaaatgtatatttaaaagaaagtcccatcttcaaggcgatcttcatgtatatttaaaagaatgtcccatctccaaagtggtatttatgtatttatatgtcaccatgaaaaagttaaaccattataccagagctgatgtataagttttaaaaacaattttgaatatttaagttgaatgataatatatttcaaagaaacctttatctccaagatgacatatattaaaaaagttgaatctcgaagttgaataatgtatttcaaagaaaatacaatattgacgctcatcacatcgttagcttagagttaatctgctgtatatatgtatatattgtttttatattttaaaaatgttcaacaatctcctagttgaattatgcaaacaatattaaaaatgaaaaagaacagttgctgaatatgtgcaaagaaataactgcatacatggatgattcatttctttttgttggaacctatttctctctgaatacgatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatggcgacaatctactgcgccatgaaggctgtataatgactgaggtacgattaggtttataaattatatttaaaaacttaatacgcaatgctaattagataacctaatacgtaaagatatgtaattaagaaaagacaaaattaacaaaaaaaaaATAA--TAA---TAC-------AA-------AG----T-ACCGAAAATAGTTC-CGATATAGCTGATATTGTGTCTCCAAAATGAATTtttgtt
gi|11 : tataattttgttaataaattaatatttaaaatcccgctgggcttatttaattgtgtatagtattactaaacaataagtgattgatcaaagatacaaaaaaaAC-------TCG--ACG-----GTAGA-CT----------------C---TC-----------------ACA-T------ACGTTCTTCGATTTGTGAAAGTTGTT---------------TCTATT-TATAGAATATCTACCCCAGGAAGTTTTGGAATGCG-TT------ACCTGAAAGACCTAGGTAg
gi|12 : ctatttttatcgT-ACAAAATTGA--ATATACAAGTCGAGTTATAATATA-------TTTCACA---GA-------------AAG---GT------TTATCTCCCAGATGACAAT---AT--GCATTTAAAAAGTTCAATCTCGAAGTTGAATTATGCA
gi|13 : TTTAT-A---T-TCTCCATGAAAAAGTCCAAC--CATTACCTCCC--CTGATGT--ATACATTTTAAAT-ACAAAATTGAATATATCCAATCTGAATG---GTATG-------TTTCATA---GA-------------Aaata
gi|14 : -TTTATCTCCGAGCTGAATTAAAATACTCGGCGAATC------G----G-AC-------ACA--ATT-----GTTGAACT----------------A---TT-----------------TCA-T
gi|15 : TT-TATAGAACATATATCCTACAAAGCTTTAGTATGCAAATTATTTAA-CTAA---ACCTTGGCAAAAGTGCCCAGG-TAAAcagcagtagaaatccatatgcgtgcatcggttt
gi|16 : GA-TAT-AAATGC-AT-----ATATG--------GACAAA--------------------TAT----A------------TCTT---TTTCGTTTTG--TT----GAAACCT--TTTATTTTG-------GA-TAaatgatttttcaa
gi|17 : a------G----GAAC-------TCA--ACT------TTGAACT----------------A---TTTTTTCAGCAGTAGAATTTCA-TAG----ACGTCCTTCGGTtgacaagtcgt
gi|19 : tTCTATCCTATGAAGCTGCGAAACGCCACT------A-CTCA---GCCTAGACAAAATTGCCCAGG-TAAAccaactttgaaa
gi|2 : TTCAAAGAATGTTCAATCTCCAAGATAATCCATATGTA-------------CA-TTG---TATATATTT-AACAAATGTCCAGCCTCCAAGTTAAAATAAT--ACATGTAATCTGTCAAAGAATGTTCAATCTTCC--AAGATAATCTACATGT--ACATTG---TATATCTTTAACA-AATGTCCAGTCTCCAAGTTAAAAT--ATGCAG-TCTGTCAAA-GAAAGTTCAATCT-CAAAGAC-GTATCTAT-ACATTTTATGAAAATATCTACAGGAAAATGTTCAACGGCA--ATCTCCCATCTGAGTT--ATACACGTTATAT-ACAAAACTGA--ATATCCAAGCTACATAATAATATA-------TTTCACA---GA-------------AAG---AT------GT----------------T---AT--GTATTTAAAAAGTTC----TCGAAGTATAATTATCAATTTCAAAG-AATGCT-CAGTGTTGACGCTTAGTACAAC-TTAACTCAGAGTTAA--TACTATGTTTGTTTGTATA--AA-TTGATTT--TTA-A----AA-AAAGATT---CAGTTGCTTAGTTGAATTATACA---------------AATAATA-TT-TAA-ACT--ACA-GATAACGGTGACCAGGA-GAT-A----C-AT-----GTATG--------TGCAAAGA----------------TACAA----T------------TCAT---TTTTGTTTTG-TTTATATGGAACCCA-TTTATTTC--------GA-TAGTCGTTAATGGCGTACTG-CAA----CAAAACA----TGTTTTGCTTA-TGAAATGAACCTAAACATTCGATTTCTGCGGTCTTCGAACCTTGACCGCCAGAACGAAAAT-CAGGAA---TGCA--TATACTACGCCATGGAGGCTGTTGTAACTA---TGGACGTTTAC-TTATGATTATAAATTAA---TAT--TTTGAAA-------AC----TTACCGACAATAGGTT-CAGAATAGCTGGTA-TATATCTCCAAACTAAATGACAATAATCGGCAATTC------A----GAAC-------TCA--ACT-----GTATAACT----------------A---TT-----------------TCA-TG-----ACGTCCTTCGGTTTATGAAAGTTATTAATATTTATAGAACATCTTTT-TATAGAACATCTTTCCTACGATGCTTCGAAACGCGACA------A-CTAA---ACCTAGGCAAATGTGCCCAAG-TAAAa
gi|3 : AGTTCAATCTCAAAGTTGAATTATATATTTCAAAG-AG-T-T-CAATTTTGATGTTCAGCACACCGTTAGTTTGGAGTCAA--TATT-T---T-TATGAATA--TA-TTG-TTT--TGA-A----AA-AAAAGTT---CAGTATCTTAGTTGTAGTATGCAAATGATATTAAAGATAACAANN-NN-NNN-N-N--N-N-NNNNNNNNNNNNNNNNN-NNN-N----N-NN-----NNNNNCCAGGTCCTGTAAATG----------------GACAA----A------------TCAA---TTTTGTTTTG-TT-----GGAACC-----TANNNN--------NN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGGCAAAAGTGCATGGC---TGTA--TTTACTATGTCATGGAGGTT-TTG---CTAGATTGAAAGTATAATT-ATGTTCATAAATTAA---TCA--TT-AAAA-------AC----T-
gi|3 : tcaaattcataaaaaaaatctatgtttacactaagaggtttacATAAATCAAATATACAGTA-AAAA-------ACAAGAC-ACCTAAAATAGTTTGTAAG-TAGCTGGTA-T-TACCTCTGAGCAGAATAAGGTTAATCGGCAATTT------G----GAAC-------TCA--ACT-----GTTGAAAT----------------ATTTTT-----------------TCACTGGTAGAACATCCTTCAGTTT-TGAAAGTTGTTACTATTTGTAGAACATTTATT-CCTACAAAATCTtaacccactacgcttatcagataaatgaaaagaacaaataataaatcaaatatacagtaaaaaacaagacacctaaaatagtttgtaagtagctggtattacctctgagcagaataaggttaatcggcaatttggaactcaactgttgaaatattttttcactggtagaacatccttcagttttgaaagttgttactatttgtagaacatttattcctacaaaatcttagacaaatttgccaaagtaaaaactac
gi|4 : tcaaattcataaaaaaaatctatgtttacactaagaggtttacagttcaatctcaaagttgaattatatatttcaaagagttcaattttgatgttcagcacaccgttagtttggagtcaatatttttatgaatatattgttttgaaaaaaaagttcagtatcttagttgtagtatgcaaatgatattaaagataacaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccaggtcctgtaaatggacaaatcaattttgttttgttggaacctannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatggcaaaagtgcatggctgtatttactatgtcatggaggttttgctagattgaaagtataattatgttcataaattaatcattaaaaacttaacccactacgcttatcagataaatgaaaagaacaaataATCT-AGATG-C--T-TTTACCATATTTTAT-AAAATATCTCCCTGAAAAAGTTCAAC--CATTATCTCAGAGCTGACTT--TTACATTTTAAAT-ACATTATTAA--AAAGCCAAATTAAATTATGATATA-------TTTCACA---GA-------------AAGTTAATCTCCGAGT----------------TGGCAA--ATATTTGCAAAGTTCAATCTCGAAGTTGATTTATGCATTTCAAAA-AA-G-T-----GTTGACGCTCAGTACATCAATATAT--------A--TACTAT----ACATGTATA--TA-TTG-TTTATCTA-A----AATAAAGGTT---CAATCTCCGAGTTGAATTATGCA---------------AACAAAAATT-TAA-A------A-AATA----TGAAAAGAACTATTA----CTAG-----ATATG--------TGCAAAGAAATTATTGCATTTATGGACAC----A------------TT-T---TTTTGTTTTA-TT------GAATCTA-TTTAAAAA--------GAACAGTCGTTTACTGAGTACTGT-AATAAACAAAATAATATTGCTTAGCTTAGTGAAATGTACtagacaaatttgccaaagtaaaaactac
gi|4 : AA-T-AT-TCTATAA--CAA----AA--TT-ACGA-------AG----T-ACTGAGAATAGTTC-CATGCTAACTGGTT-TATATATCCAAATTAAATTAAAACAATCGGCGATAG------G----GAAC-------TTA--TCT-----ATGGAACT----------------A---TT-----------------TTA--GG----ACGACCTTT-GTTTGTA--------TCCT------------TCTATT-AATAGAACATCAATCATATGAAGCTTCGAAACGCG---------A-CTTA---ACCGAGGCAAATTGGCCGAGG-TAaataaaatgtttgtcgcccaaacggcggcaatcggcttatcaaataaatgaatacgaaaagaataattaattcatcaaatattctataacaaaattacgaagtactgagaatagttccatgctaactggtttatatatccaaattaaattaaaacaatcggcgatagggaacttatctatggaactattttaggacgacctttgtttgtatccttctattaatagaacatcaatcatatgaagcttcgaaacgcgacttaaccgaggcaaattggccgaggta
gi|5 : atctagatgcttttaccatattttataaaatatctccctgaaaaagttcaaccattatctcagagctgacttttacattttaaatacattattaaaaagccaaattaaattatgatatatttcacagaaagttaatctccgagttggcaaatatttgcaaagttcaatctcgaagttgatttatgcatttcaaaaaagtgttgacgctcagtacatcaatatatatactatacatgtatatattgtttatctaaaataaaggttcaatctccgagttgaattatgcaaacaaaaatttaaaaaatatgaaaagaactattactagatatgtgcaaagaaattattgcatttatggacacatttttttgttttattgaatctatttaaaaagaacagtcgtttactgagtactgtaataaacaaaataatattgcttagcttagtgaaatgtacaataaaatgtttgtcgcccaaacggcggcaatcggcttatcaaataaatgaatacgaaaagaataattaattcatca---TATAT-TATG--TAATTG-TTT--T--------AA-ATACGT----------CCTAGCTGAGTTATGCC---------------TA-AATA-TT-AAAGA-T--A-ACAANNNNNNNNNNNNNNN-NNN-N----N-NN-----NNNNN--------NNNNNNNNNNNNNNNC--------GACAA----A------------TCATGGTTTTTGTTTTG-TT-----GGAATCTAATTTATTTTTTTAATAGGA-TATTCGCTTATGGAGTACTGTCA----GAAAAATAGTATTGCT------GGT-AAATTGGTTGCCCTCCCCTCAAAAAAGAGATAAGTTGCCTTAGAATGTGAACC--AGG---ACGGCCAGTGCAACTTTGCTACGCT-TGCAGA----TG-AATGAGTATGGAAA-ATAA-T-AAGTT-ATAAATCAAAGATACAATT-GAAATCAAGTAAG----T-ACCAACACTATTTC-AAAGATAAGTGGT-------CT------TGAACTGGGATTATCGCCTATTC------G----GAAC-------TCATTATTTTTTTGCGGAGAT--------------------TT-----------------TCA-TGG----ACGTCATTCGGTTTGTGAAAGGTGTTACT---CAT------TCTATT-TATAGAACACCTATCCTACAAAGCTT--------------------TTAA---ACTTTGGCAAATTTGCCCAGG-TAAA
gi|6 : ATTGTAAGCTCGGAGTCAA--TA-TAC---TATATATGTGGTTA-ATA-TTT--TTA-A----AA-----GTT---CAATCTCCTAGCTGAATTATGCA---------------TA-AATA--T-TA-------A-A-GATAACAAAGACT-GGA-TAT-A----T-ATGCTAAATATC--------TGCAAAGATAGAAATGAATATGTTGACAA----A------------TCAT---TTTTGTTTTA--TT----GGAACTCA-ATTTTTTT--------TA-TAGaatagttctgcaa
gi|6 : agagtATTGTAGGTATAA-T-ATGTTTATAAATTAA----AC--TT-AATA-------GC----T-Agataaaattcgaacctggattgtccccctggctctatccactgtgttgcctgtgccattatgtaattgtaggtataatatgtttataaattaaacttaatagctagacttgtcagattaataaatacgaaaagaataagttattcatcataaatacaataaaaataatagaaaataccgaaaatagtgccaagatagctggtatttatctccatactgaatttcaataaaagtggattcgtgcaaaaccaaactgttgaattataatttcaggtgtccttcagtttgtgaaagttattactt
gi|6 : agagtattgtaagctcggagtcaatatactatatatgtggttaatatttttaaaagttcaatctcctagctgaattatgcataaatattaaagataacaaagactggatatatatgctaaatatctgcaaagatagaaatgaatatgttgacaaatcatttttgttttattggaactcaattttttttataggataaaattcgaacctggattgtccccctggctctatccactgtgttgcctgtgccattatgtaATAAA--AA---TAA--TA-GAAA-------A-----T-ACCGAAAATAGTGC-CAAGATAGCTGGTA-TTTATCTCCATACTGAATTTCAATAAAAGTGGATTC------GTGCAAAAC-------CAA--ACT-----GTTGAATTATA-------------A---TT-----------------TCA---G----GTGTCCTTCAGTTTGTGAAAGTTATTACTgacttgtcagattaataaatacgaaaagaataagttattcatcataaatacaataaaaataatagaaaataccgaaaatagtgccaagatagctggtatttatctccatactgaatttcaataaaagtggattcgtgcaaaaccaaactgttgaattataatttcaggtgtccttcagtttgtgaaagttattactt
gi|7 : agagtattgtaagctcggagtcaatatactatatatgtggttaatatttttaaaagttcaatctcctagctgaattatgcataaatattaaagataacaaagactggatatatatgctaaatatctgcaaagatagaaatgaatatgttgacaaatcatttttgttttattggaactcaattttttttataggataaaattcgaacctggattgtccccctggctctatccactgtgttgcctgtgccattatgtaattgtaggtataatatgtttataaattaaacttaatagctagacttgtcagattaataaatacgaaaagaataagttattcatcataaatacaT-GAAA-----------------CGAAAATAGTTC-CAGTCTAGTTGGTT-TATATCTCCAAATTAAATGAAAATAATCGGTGTTTC------G----GAAC-------TCA--ATT-----ACGGAACT----------------A---TA-----------------TC--TGA----ACATCCTTCGGTAGTTGAAAGTTGTCACTATTTATAGAACATCT----------GCA------CTAC---------AAACGCGACT------A-CTTA---ACCTAGGCAAATATGTCCAGGTTAAAt
gi|8 : tataagtttatttttggaaatttacttacacccgctttgcttatttaataaataattacgacaatgataagccattagtcaaatatacagtatcaaagtagagAA---CAC--TA-GAAA-------G-----T-AC-GGAAATAGTTC----------TG--A-CATATCTCCGAACGGAATTATTATAACCGGT-ATTT------G----GAAC-------TCA--ACT-----GTTGAACTTTTTTTCAGTGGTAGAA---TT-----------------TCA-TGG----AAGTCGTTCTGTTTGTTAAAG--------------AAATTATC-ATT-TATAGAACATCTACCCTACGAAGTTTTTCAACGCAACT------A-CTAA---ACAACGGCACATCTGCTTAGA-TAAatgactacttggtatttacagcaaaatccactgtaaatgtatccacctttcatttcttacaataacatgtacgtaaattatagttttgttgatttacactaggtaaattgta
gi|9 : ctatccactgtgtcttgcagggttagagttatatgtacgacttataatcatgttaatacatttatctgtaaacttaaccgacagactataattgataactgaatatgaaaaaaataactaataactaaaacataaaacaaaTTATCTCCGAGCTGACGTTAAAAGATT---AATAACAAAATTAC--ATATCCAAGGTGAAT--TAATATAGTTCAATTTTTACGCTTGAC------------AAA---CT------GT----------------T---ACCGGTAATTAAAA--TTCAATTACTATAT--AATTATGcaataggagactcggttttaacggca
gi|9 : ----AA-AAAAGTT---AAATATCTTAGTGGAATTATGCA---------------AATATTA-TTATAG-ATT--ACA-AAGACCGGTAACCAAGA-TAT-A----A-AT-----GCAT------------AAATG----------------GACAA----A------------CCAT---TTTATTTTTGTTTT----GGAACCT--TTTATTTtgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaaaaaagttaaatatcttagtggaattatgcaaatattattatagattacaaagaccggtaaccaagatataaatgcataaatggacaaaccattttatttttgttttggaaccttttattt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): ATGCAATATGTGCAGAGATATAAATGCACACATGGACAAATTATTGTTGGAACTCAACTTT