lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 2222 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 11 1 111111111 1111111111 1 1 6666666666666666666666666666666666666666666666666666
lowQualScore : 3 0 3 99 99 1111 6 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 3 9 00 3 3 3 0 0 4 3 88 444444444 3333333333 4 7 0 2 7 5 4444444444444444444444444444444444444444444444444444 3 88 6
lowQualScore : . . . .. .. .... . ..................................................................................................................................................................... . . .. . . . . . . . .. ......... .......... . . . . . . .................................................... . .. .
lowQualScore : 0 6 5 22 22 0000 7 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 3 3 00 3 3 3 5 2 1 6 33 777777777 1111111111 0 2 4 7 0 4 1111111111111111111111111111111111111111111111111111 4 55 0
consensus : ATGTTGGTTTCAGTGAAA--TA--TC-G--TTTTA-TTTTAT---CAC--AGNAAGC-ACTGA---AATGGTANG-GTCACG-----------GTGG----CGAAGCCACGAGTG-A----GCATG-CCA-AT-TCAGT-----GTTCATGA-GTGAAATTTAAT-TT--A-TGATATT--T------AA------------T--ATT-TTATTT-T-T-A-TTTTATGATTNAAAAC-AGCG-AAA---T-----TACCA------TTT-ATAATT-TCACTATTTTNAACAGTGAAATTACCAAAA--------ATAAT-TCA-C--TG-A--AA-ATCT------------CTATAATTCATCAAAAAGGCATAAA
Reference ( gi|2 ) : ATGTTGATTTTATTAAAA--TA--TT-G--TTTTA-TTTTA----CAC--AGGGAGC-AGTGA---GGTGGTAAG-GTCAC------------GTGA----CAAAGCTGCAAGTG-A----GCATG-CCA-ATATCAGT-----GTTCATGA-GTGAAATTTAATATTGCA-TAATATT--T------AA------------T--ATT-TTATTC-T-T-A-TTTCATGATTGAAAAC-AGTA-AAA---T-----TACCA------TTT-ATAATT-TCACTACTTTAAACAATGAAATAACCACAA--------ATATT-TCA-C--TG-AAGAA-ATCT------------ATATAATTCATCAAAAAGACACAAA
gi|8 : ATGTTTGTTTTAGTGAAA--TG--TTAG--TCTTA-TGTCAT---CAC--GTGAAGC---TGA---AATG-TAACTGTCACGT----------GTGG----AGAAGTCAGGAGTG-G----GCTTGTTTT-AT-TCAGTTAAGGGTTTCCCG-GTGAAATTTAAT-TTA----AA---C--T------AA------------C--ATT-TTGTT--T-T-A-TTTTATGATATTAAAC-AGTT-AAA---C-----T
gi|5 : aaTGTTGGTTTCAATGAAA--TG--TT----TTTTA-TTTTAT---CA---AGTAAGC-ACTGA---GATGGAATG-GTCACAAGCAATAAGTTGTAAGCAGCGAAGTTTCTAGTG-AGCTTGCATG-CCA-AGTTTAGT-----GGTCATTA-GTGAATTTTAAT-------TGATATT--T--------------------T--ATT-
gi|10 : TGTTGGTTTCAGTGAAT--TA--TC-A--TTTTA-TTTCA----TTA--AGCAAGC-A---------TGG-AA---T----------------TGG----CGAAGCCACGAGTG-A-----CATG-CCA-AT-TCAGT-----TTTC-TGAAGTGAAATTAAA------A-TGATATT--T------TA------------CCAATTGTTGTTCAT-T-A-TTT-ATGAgaaaccaacaatttgctactttaaaaataaatctctataattcatcaaaaaacataa
gi|14 : attaaaacagaaatatTGTTAGCTTCAGTGAAA--TA--TT-G--TTTT--TTTTAT---CATTGAGTGAGC-ACAGACTTAGTGGTATA-TTCAT------------GTCA----CAAcaatggaatacca
gi|1 : attataaacatgaaatatagaataatTGATTTTATTATAAGTTAACTT-GGGCTATA-TTTTAATTCCACCGAGAGAGC-ACTGG---GGTGGCAAG-G-----------------------------CTATAAGTA-A----GGAGG-CGACAT-TTAGT-----GGTCATGA-GTAAACTTC--TATTG-----AT-TT--T------AAAGACACCAACGAT--ATT-T-ATTT-C-T-A-TTTTATGGTTAAAACC-AACG-AGC---T-----TATCA------TTG-ATAGTT-TCACGATTTTAAACAGTGAAATTATCAAAA--------ATAAA-CCT-C--TG--AGAA-ATCT------------TTATAATTCACC-AAAGGGCATAAAgtggcaccgacttag
gi|6 : cTGAAA--TA--TC-C--TTTTAAGTTTA----T-C--AGGATGCCACTGA---AATGGTATG-GTCACAT----------GTGT----TGAAGCCAAAGATGGA----GCATG-TCA-AT------------TTCACGA----AA--CCA-----GCA-----ATT----------------------------T-TTAT----------TTCCTGATCAAAAAC-TGGG-AAA---A-----TACCA------CTC-ATAATT-TC-CTGCTTTTAACAGTGATATTA-TAGAA--------ATAAT-TCA-G--TG-A--GA-ATCT-------------T-TAATTAATCAAataaatg
gi|7 : AGCCCTAAGTG-A----TAATG-TCA-AT------------TTCATGA-ATAAAATTTAAT-------TGATGTT--TTACTGAAA------------C--AAA-CAATTA-T-T-AATTT--TGGTTAAAAATGAAAA-AAA---A-----TACCA------TTTTATAATT-CCACTATATTAAACAGTGAAATTACCAAAC--------ATAAA-TCA-T--CGTAATAA-ATTT-------------T-TAATTCAT--AAAAAACATAAA
gi|4 : CAAATG-A----GCAAG-CTA-ATATCTGC-----GTT-ATAA-ATTTAATT-GATATTTTACTAAAACTAGC------AA------------T--TCC-TT-TTT-T-T-A-ATTTATGGTTGAAAGC-AGTACAAA---TACATGTACCA------TTTTATAACT-TCACTA-TTTCAATGGTGAAATTATCAAAT--------ATAAT-CCA-C--TA-ACAAATATCTGTTTATATATACATGTAATTCATTTTAAAG-CATAAAtttaaataaat
gi|11 : gtaccagtgaaatatca-A----GCATG-CAG-ATTTTAGT-----ATTCATGC-GTGACCTTTAAT-------TGATATT--TCACAG-AA------------T--GCT-TT-TTC-T-T-T-TATCA----TGAAAAC-TGTG-AAT---T-----AACCA------AAG-AAAAGG-TCACTATTTTCAACAATCAAATTGCCA-AATTT-----ACATT-TCATC--TG-aca
gi|12 : TAATATTTCACTGAAATT--T------AC------------C--CTT-TTATTT-T-TTA-CTTTATGAATAAAATC-AGCA-AAA---T-----TATCA------TTT-ATAATT-TCAATAATTGTAAGAGTGAGATTATCACAATAACAGTGATATTATCA----------AA-A-----------------ATAATTCATCAAAAAGcaatcaaacct
gi|16 : --T------AA------------T--TTA-TTATTT-T-T-A-TTTCATGATTAAAAAC-AGTG-AAA---T-----TACCA------TAT-ATAATT-TCACcatgaaacaatag
gi|3 : ------AA------------T--ATT-TC--CC-TAT-A-TTTTATGATCGTAAAC-TGCA-GAA---T-----TACCAGTATACTTT-ATAATT-TCACTACTTCAAACTGTAAAATTACTAAAA--------ATA
gi|13 : ggattagtgaaatatcatttttatttcatatagtgagcatttatattaattcttttatgttttaattgatacttcactgaaaccaac-TTCTTT-T-T-A-TTTTATGGTTTAAAAC-AGT--ATA---T-----TGCTA------ATT-ACAATTATAA--ATTTTTAACAATGAAATTAACAAAA--------GCAGT-ACA-CTTTG-ATG----CCT------------CCATAATTCATCAAAAAGaataaaagataaatgttcagtcatctttgcttgtaacattttagaaaatgtaac
gi|9 : -T-A-TTT-ATGTTTTAAAAC-AGTG-AAAAGGG-----TA----------TT-ATTATT-TCACTATTTT-AACAGTGGAATTATCAAAA--------AGAAT-TTA-C--TG-A--GA-ATCT------------CTATAA-TCATCAAAAAAGCGTAAAcattaaataaat
gi|5 : atcgagtggtgacgatttaattgatatttcatcgaaactaataacaaaaatataAA-ATCT------------CTATAATTCATCAAAAA-ACATAActaaatg
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|15 ): TGATAAACTCACTTCTTTAAATGGTGAATTTATCAAGATATAATCCACCTTTTTTTCAATAAACCACCGAAAGGCATGAAATAAATGTTGATG
Alignments
lowQualScore : 11 1111 222 6666666666666666666666666666666666 111111 1111111111111 666666666666666666666666666666666666666 111 111111111 1111111111 2222 3333333333333333333 2
lowQualScore : 00 5 0000 999 1 888 1111111111111111111111111111111111 666666 33 5 9999 8 4 7777777777777 55 0 4 9999 555555555555555555555555555555555555555 3 6666 1 3 111 222222222 4444444444 3 8 4 77 666 4444 8888888888888888888 3 5
lowQualScore : .. . .... ... . ... .................................. ...... .. . .... . . ............. .. . . .... ....................................... . .... . . ... ......... .......... . . . .. ... .... ................... . .
lowQualScore : 99 7 1111 444 0 000 9999999999999999999999999999999999 444444 44 0 4444 9 4 4444444444444 66 1 7 4444 888888888888888888888888888888888888888 1 4444 0 1 333 999999999 5555555555 3 1 9 44 222 7777 3333333333333333333 2 0
consensus : ATGTTGGTTTCAGTGAAATATC-GTTTTA-TTTTA---TCAC--AGNGAGC-ACTGA---AATGGTATG-----GTCAC---------G-GTG------GCGAAGCCACAAGT-GAGC----ATGCCA-A-T-TC-AGT-----GTTCATG-AGTGAAATT----TAAT-T---A-GATATTT------A--AC-----ATT--TTATTT-TT-AT-TTTATGATTGAAAAC-AGCG-AAA---T-----TACCA------TTT-ATAATT-TCACTATTTTNAACAGTGAAATTACCAAAAATAATTCAC--TG-A--AAATCTC--------------TA---TAATTCATCAAAAA-GCA-TAAA
Reference ( family-139 ) : ATGTTGGTTTCAGTGAAATATC-GTTTTA-TTTTA---TCAC--AGNAAGC-ACTGA---AATGGTANG-----GTCAC---------G-GTG------GCGAAGCCACGAGT-GAGC----ATGCCA-A-T-TC-AGT-----GTTCATG-AGTGAAATT----TAAT-TT--ATGATATTT------A--AT-----ATT--TTATTT-TT-AT-TTTATGATTNAAAAC-AGCG-AAA---T-----TACCA------TTT-ATAATT-TCACTATTTTNAACAGTGAAATTACCAAAAATAATTCAC--TG-A--AAATCTC--------------TA---TAATTCATCAAAAAGGCA-TAAA
gi|1 : TA-TTTTAATTCCACCGAGAGAGC-ACTGG-------------------------------G-GTG------GCAAGGCTATAAGT-AAGG----AGGCGACA-T-TT-AGT-----GGTCATG-AGTAAACTTCTATTGAT-TTTAAAGACACCA------ACGAT-----ATT--T-ATTT-CT-AT-TTTATGGTTAAAACC-AACG-AGC---T-----TATCA------TTG-ATAGTT-TCACGATTTTAAACAGTGAAATTATCAAAAATAAACCTC--TG-AG-AAATCTT--------------TA---TAATTCACC-AAAGGGCA-TAAA
gi|10 : ctgattttattataagttaacttgggctaTGTTGGTTTCAGTGAATTATC-ATTTTA-TTTCA---TTA---AGCAAGC-A-TGG---AAT----------------------------TG------GCGAAGCCACGAGT-GA-C----ATGCCA-A-T-TC-AGT-----TTTC-TGAAGTGAAATT----AAA------ATGATATTT------T--ACCA---ATTG-TTGTTCATT-A--TTTATGAataaatg
gi|11 : attaaaacagaaatatAGC----ATGCAG-A-T-TTTAGT-----ATTCATG-CGTGACCTT----TAAT-T-----GATATTTCACAG-A--AT-----GCT--TT-----TT-CT-TTTATCAT-GAAAAC-TGTG-AAT---T-----AACCA------AAG-AAAAGG-TCACTATTTTCAACAATCAAATTGCCAAAcaatggaatacca
gi|12 : TGAAATTT------A--CC-----CTT--TTATTT-TTTAC-TTTATGAATAAAATC-AGCA-AAA---T-----TATCA------TTT-ATAATT-TCAATAATTGTAAGAGTGAGATTATCACAA-TAA--CAG--TG-A--TATTATC--------------AAAAATAATTCATCAAAAA-GCA-TGAAtttacatttcatctgcaatcaaacct
gi|13 : taatatttcac--TTCTTT-TT-AT-TTTATGGTTTAAAAC-AGT--ATA---T-----TGCTA------ATT-ACAATTATAA--ATTTTTAACAATGAAATTAACAAAAGCAGTACACTTTG----ATGCCTC--------------CA---TAATTCATCAAAAA-GCATTAAAacaatag
gi|14 : TGTTAGCTTCAGTGAAATATT-GTTTT--TTTTA---TCATTGAGTGAGC-ACAGACTTAGTGGTATATTCATGTCACA--------A-GTG------GCtaaat
gi|16 : attataaacatgaaatatagaataatT------A--AT-----TTA--TTATTT-TT-AT-TTCATGATTAAAAAC-AGTG-AAA---T-----TACCA------TAT-ATAATT-TCACaccgacttag
gi|2 : ATGTTGATTTTATTAAAATATT-GTTTTA-TTTTA----CAC--AGGGAGC-AGTGA---GGTGGTAAG-----GTCAC---------G--TG------ACAAAGCTGCAAGT-GAGC----ATGCCA-A-TATC-AGT-----GTTCATG-AGTGAAATT----TAATATTGCATAATATTT------A--AT-----ATT--TTATTC-TT-AT-TTCATGATTGAAAAC-AGTA-AAA---T-----TACCA------TTT-ATAATT-TCACTACTTTAAACAATGAAATAACCACAAATATTTCAC--TG-AAGAAATCTA--------------TA---TAATTCATCAAAAAGACA-CAAA
gi|3 : TGTTGGTTTCAGTGAAGTATC-
gi|3 : ggattagtgaaatatcatttttatttcatatagtgagcatttatattaattcttttatgttttaatt------A--AT-----ATT--TC-CCT-AT-AT-TTTATGATCGTAAAC-TGCA-GAA---T-----TACCAGTATACTTT-ATAATT-TCACTACTTCAAACTGTAAAATTACTAAAAATAAatatttccctatattttatgatcgtaaactgcagaattaccagtatactttataatttcactacttcaaactgtaaaattactaaaaataaataaaagataaatgttcagtcatctttgcttgtaacattttagaaaatgtaac
gi|4 : ggattagtgaaatatcatttttatttcatatagtgagcatttatattaattcttttatgttttaattgatacttcactgaaaccaacCACAAAT-GAGC----AAGCTA-A-TATC-TGC-----GTT-AT------AAATT----TAAT-T-----GATATTTTACTAAA--ACTAGCAATTCCTT-TTT-TT-AA-TTTATGGTTGAAAGC-AGTACAAA---TACATGTACCA------TTTTATAACT-TCACTATTT-CAATGGTGAAATTATCAAATATAATCCAC--TA-AC-AAATATCTGTTTATATATACATG---TAATTCATTTTAAA-GCA-TAAAataaaagataaatgttcagtcatctttgcttgtaacattttagaaaatgtaac
gi|5 : gtaccagtgaaatatTGTTGGTTTCAATGAAATGTT--TTTTA-TTTTA---TCA---AGTAAGC-ACTGA---GATGGAATG-----GTCACAAGCAATAAG-TTGTAAGCAGCGAAGTTTCTAGT-GAGCTTGCATGCCA-AGT-TT-AGT-----GGTCATT-AGTGAATTT----TAAT-T-----GATATTT------------------------------------T---ATTGAA----------------------ACCA----------ACAATT-T-GCTACTTT----------------AAAAATA---------------AATCTC--------------TA---TAATTCATCAAAAA-ACA-TAAaca
gi|6 : TGAAATATC-CTTTTAAGTTTA---TCA----GGATGCCACTGA---AATGGTATG-----GTCAC---------ATGTG------TTGAAGCCAAAGATGGAGC----ATGTCA-A-T-------------TTCACG-A---AA--C----CAG--------------C------A--AT------TT--TTATTT-CC--------TGATCAAAAAC-TGGG-AAA---A-----TACCA------CTC-ATAATT-TC-CTGCTTTTAACAGTGATATTA-TAGAAATAATTCAG--TG-A--GAATCTT-------------------TAATTAATCAA
gi|7 : AGCCCTAAGT-GATA----ATGTCA-A-T-T------------TCATG-AATAAAATT----TAAT-T-----GATGTTTTACTGAA--AC-----AAA--CAATTA-TT-AA-TTT-TGGTTAAAAATGAAAA-AAA---A-----TACCA------TTTTATAATT-CCACTATATTAAACAGTGAAATTACCAAACATAAATCAT--CGTAATAAATTTT-------------------TAATTCATAAAAAA--CA-TAAA
gi|8 : ATGTTTGTTTTAGTGAAATGTTAGTCTTA-TGTCA---TCAC--GTGAAGC---TGA---AATGTAACT-----GTCAC---------GTGTG------GAGAAGTCAGGAGT-GGGC----TTGTTTTA-T-TC-AGTTAAGGGTTTCCC-GGTGAAATT----TAAT-TT--A----AACT------A--AC-----ATT--TTGTTT-T--AT-TTTATGATATTAAAC-AGTT-AAA---C-----Ttttaaataaat
gi|9 : aaT-ATATTTATGTTTTAAAAC-AGTG-AAAAGGG-----TA----------TT-ATTATT-TCACTATTTT-AACAGTGGAATTATCAAAAAGAATTTAC--TG-A--GAATCTC--------------TA---TAA-TCATCAAAAAAGCG-TAAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): TGATAAACTCACTTCTTTAAATGGTGAATTTATCAAGATATAATCCACCTTTTTTTCAATAAACCACCGAAAGGCATGAAATAAATGTTGATG
Alignments
lowQualScore : 111 2222 5555555555555555555555555555555555555 111111111111 77777777777777777777777777777777777777777777777777777 111111111111111 111111111 111111 11 2222 3333333333333333333
lowQualScore : 666 5 888 6666 1 5 5 1 9999999999999999999999999999999999999 888888 7777 7 3 7 999999999999 666 2 333 66666666666666666666666666666666666666666666666666666 33 111111111111111 3 3 2 3 999 222222222 000000 7 3 4 3 00 666 4444 8888888888888888888 4 5 5
lowQualScore : ... . ... .... . . . . ..................................... ...... .... . . . ............ ... . ... ..................................................... .. ............... . . . . ... ......... ...... . . . . .. ... .... ................... . . .
lowQualScore : 777 0 888 6666 0 0 0 4 3333333333333333333333333333333333333 222222 7777 3 6 3 555555555555 777 0 777 11111111111111111111111111111111111111111111111111111 22 444444444444444 1 1 9 3 888 777777777 555555 3 6 9 9 22 222 7777 3333333333333333333 4 0 0
consensus : ATGTTGGTTTCAGTGAAATATC-G-TTTTA-TTTTA---TCAC--AGNGA-GC-ACTGA---AATGGTATGGTCAC---------G-GTG------GCGAAGCCACAAGTG-A----GCAT----GCCA-A-T-TC-AGT-----GTTCATG-AGTGA-AATTTAAT------T--GATATTT----------AA---C-----AT--------T----TTA-TT--------T-T----T-AT-TTTATGATTNAAAAC-AGCG-AAA---T-----TACCA------TTT-ATAATT-TCACTATTTTNAACAGTGAAATTACCAAAAATAATTCAC--TG-A--AAATCTC--------------TA---TAATTCATC-AAAAAG-CA-TAAA
Reference ( family-139 ) : ATGTTGGTTTCAGTGAAATATC-G-TTTTA-TTTTA---TCAC--AGNGA-GC-ACTGA---AATGGTATGGTCAC---------G-GTG------GCGAAGCCACAAGTG-A----GCAT----GCCA-A-T-TC-AGT-----GTTCATG-AGTGA-AATTTAAT------T-AGATATTT----------AA---C-----AT--------T----TTA-TT--------T-T----T-AT-TTTATGATTGAAAAC-AGCG-AAA---T-----TACCA------TTT-ATAATT-TCACTATTTTNAACAGTGAAATTACCAAAAATAATTCAC--TG-A--AAATCTC--------------TA---TAATTCATC-AAAAAG-CA-TAAA
gi|1 : TA-TTTTAATTCCACCGAGAGA-GC-ACTGG--------------------------G-GTG------GCAAGGCTATAAGTA-A----GGAG----GCGACA-T-TT-AGT-----GGTCATG-AGTAA-ACTTCTAT------T--GAT-TTT----------AAAGAC-----ACCAACGATAT----TTA-TT--------T-C----T-AT-TTTATGGTTAAAACC-AACG-AGC---T-----TATCA------TTG-ATAGTT-TCACGATTTTAAACAGTGAAATTATCAAAAATAAACCTC--TG-AG-AAATCTT--------------TA---TAATTCACC-AAAGGG-CA-TAAA
gi|10 : ctgattttattataagttaacttgggctaTGTTGGTTTCAGTGAATTATC-A-TTTTA-TTTCA---TTA---AGCAA-GC-A-TGG---AAT-----------------------TG------GCGAAGCCACGAGTG-A-----CAT----GCCA-A-T-TC-AGT-----TTTC-TGAAGTGA-AATTAAAA------T--GATATTT----------TA---CCA---AT--------TG---TTG-TT--------CAT----T-A--TTTATGAataaatg
gi|11 : attaaaacagaaatat-A----GCAT----GCAG-A-T-TTTAGT-----ATTCATG-CGTGA-CCTTTAAT------T--GATATTT----------CA---C-----AG--------A----ATGCTT--------T-T----T-CT-TTTATCAT-GAAAAC-TGTG-AAT---T-----AACCA------AAG-AAAAGG-TCACTATTTTCAACAATCAAATTGCCAAAcaatggaatacca
gi|12 : ATTTCAC------T--GAAATTT----------AC---C-----CT--------T----TTA-TT--------T-T----TTAC-TTTATGAATAAAATC-AGCA-AAA---T-----TATCA------TTT-ATAATT-TCAATAATTGTAAGAGTGAGATTATCACAA-TAA--CAG--TG-A--TATTATC--------------AAAAATAATTCATC-AAAAAG-CA-TGAAtttacatttcatctgcaatcaaacct
gi|13 : taat----TTC-TT--------T-T----T-AT-TTTATGGTTTAAAAC-AGT--ATA---T-----TGCTA------ATT-ACAATTATAA--ATTTTTAACAATGAAATTAACAAAAGCAGTACACTTTG----ATGCCTC--------------CA---TAATTCATC-AAAAAG-CATTAAAacaatag
gi|14 : TGTTAGCTTCAGTGAAATATT-G-TTTT--TTTTA---TCATTGAGTGA-GC-ACAGACTTAGTGGTATATTCAT-------------------------GTCACAAGTG------GCA------CCG-A-C-TT-AGtaaat
gi|16 : attataaacatgaaatatagaataat----TTA-TT--------T-T----T-AT-TTCATGATTAAAAAC-AGTG-AAA---T-----TACCA------TAT-ATAATT-TCAC
gi|2 : taatttaATGTTGATTTTATTAAAATATT-G-TTTTA-TTTTA----CAC--AGGGA-GC-AGTGA---GGTGGTAAGGTCAC---------G--TG------ACAAAGCTGCAAGTG-A----GCAT----GCCA-A-TATC-AGT-----GTTCATG-AGTGA-AATTTAATATTGCAT-A-ATATTT----------AA---T-----AT--------T----TTA-TT--------C-T----T-AT-TTCATGATTGAAAAC-AGTA-AAA---T-----TACCA------TTT-ATAATT-TCACTACTTTAAACAATGAAATAACCACAAATATTTCAC--TG-AAGAAATCTA--------------TA---TAATTCATC-AAAAAGACA-CAAA
gi|3 : TTAGTGAAATATC-ATTTTTA-TTTCA---T-AT--AGTGA-GC-ATT
gi|3 : ggaAGTG-A----GCATTTATATTA-A-T-TC---T------TTTATG---T-----TTTAAT------T--GATACTTCACTGAAACCAA---C-----AA--------T------A-TT--------T-CCCTAT-AT-TTTATGATCGTAAAC-TGCA-GAA---T-----TACCAGTATACTTT-ATAATT-TCACTACTTCAAACTGTAAAATTACTAAAAATAAtatattaattcttttatgttttaattgatacttcactgaaaccaacaatatttccctatattttatgatcgtaaactgcagaattaccagtatactttataatttcactacttcaaactgtaaaattactaaaaataaataaaagataaatgttcagtcatctttgcttgtaacattttagaaaatgtaac
gi|4 : ggattagtgaaatatcatttttatttcatatCACAAATG-A----GCAA----GCTA-A-TATC-TGC-----GTT-AT------A-AATTTAAT------T--GATATTTTACTAA----AA---CTAGCAAT--------TCC--TT--TT--------T-T----T-AA-TTTATGGTTGAAAGC-AGTACAAA---TACATGTACCA------TTTTATAACT-TCACTATTT-CAATGGTGAAATTATCAAATATAATCCAC--TA-AC-AAATATCTGTTTATATATACATG---TAATTCATT-TTAAAG-CA-TAAAataaaagataaatgttcagtcatctttgcttgtaacattttagaaaatgtaac
gi|5 : gtaccagtgaaatatTGTTGGTTTCAATGAAATGTT---TTTTA-TTTTA---TCA---AGTAA-GC-ACTGA---GATGGAATGGTCACAAGCAATAAG-TTGTAAGCAGCGAAGTTTCTAGTG-AGCTTGCAT----GCCA-AGT-TT-AGT-----GGTCATT-AGTGA-ATTTTAAT------T--GATATTT----------aca
gi|5 : AAAAATAA---------------ATCTC--------------TA---TAATTCATC-AAAAAA-CA-TAAtattgaaaccaacaatttgctactttaaaaataaatctctataattcatcaaaaaacataa
gi|6 : tgttggtttcaatgaaatgttttttattttatcaagtaagcactgagatggaatggtcacaagcaataagttgtaagcagcgaagtttctagtgagcttgcatgccaagtttagtggtcattagtgaattttaattgatattttattgaaaccaacaatttgctactttTGAAATATC-C-TTTTAAGTTTA---TCA-----GGATGCCACTGA---AATGGTATGGTCAC---------ATGTG------TTGAAGCCAAAGATGGA----GCAT----GTCA-A-T-T------------TCACG-A----------AAC------C-AG---------------------C-----A----------------A-TT--------T-T----T-AT-TTCCTGATCAAAAAC-TGGG-AAA---A-----TACCA------CTC-ATAATT-TC-CTGCTTTTAACAGTGATATTA-TAGAAATAATTCAG--TG-A--GAATCTT-------------------TAATTAATC-AA
gi|7 : AGCCCTAAGTG-A----TAAT----GTCA-A-T-T------------TCATG-AATAA-AATTTAAT------T--GATGTTTTACTGA----AA---C-----AA--------A----CAA-TT--------A-T----T-AA-TTT-TGGTTAAAAATGAAAA-AAA---A-----TACCA------TTTTATAATT-CCACTATATTAAACAGTGAAATTACCAAACATAAATCAT--CGTAATAAATTTT-------------------TAATTCAT--AAAAAA-CA-TAAA
gi|8 : ATGTTTGTTTTAGTGAAATGTTAG-TCTTA-TGTCA---TCAC---GTGA-A--GCTGA---AATGTAACTGTCAC---------GTGTG------GAGAAGTCAGGAGTG-G----GCTT----GTTTTA-T-TC-AGTTAAGGGTTTCCC-GGTGA-AATTTAAT------TTAAAC---T----------AA---C-----AT--------T----TTG-TT--------T-T------AT-TTTATGATATTAAAC-AGTT-AAA---C-----Ttttaaataaat
gi|9 : aaGTGACGATTTAAT------T--GATATTT---------------C-----AT--------CGAAACTA-ATAACAAAAAT-A----T-ATATTTATGTTTTAAAAC-AGTG-AAAAGGG-----TA----------TT-ATTATT-TCACTATTTT-AACAGTGGAATTATCAAAAAGAATTTAC--TG-A--GAATCTC--------------TA---TAA-TCATCAAAAAAG-CG-TAAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): TGATAAACTCACTTCTTTAAATGGTGAATTTATCAAGATATAATCCACCTTTTTTTCAATAAACCACCGAAAGGCATGAAATAAATGTTGATG
Alignments
lowQualScore : 111 2222 5555555555555555555555555555555555555 111111111111 6666666666666666666666666666666666666 111111111111111 111111111 111111 11 222 3333333333333333333
lowQualScore : 666 5 888 6666 1 5 5 1 9999999999999999999999999999999999999 888888 7777 7 3 7 999999999999 666 2 333 999999 6666666666666666666666666666666666666 33 111111111111111 3 3 1 3 999 222222222 000000 7 3 3 4 3 00 0 66 4 333 8888888888888888888 4 5 5
lowQualScore : ... . ... .... . . . . ..................................... ...... .... . . . ............ ... . ... ...... ..................................... .. ............... . . . . ... ......... ...... . . . . . .. . .. . ... ................... . . .
lowQualScore : 777 0 888 6666 0 0 0 4 3333333333333333333333333333333333333 222222 7777 3 6 3 555555555555 777 0 777 666666 5555555555555555555555555555555555555 22 444444444444444 1 1 0 3 888 777777777 555555 3 6 0 9 9 22 1 11 4 999 3333333333333333333 4 0 0
consensus : ATGTTGGTTTCAGTGAAATATC-G-TTTTA-TTTTA---TCAC--AGNGA-GC-ACTGA---AATGGTATGGTCAC---------G-GTG------GCGAAGCCACAAGTG-A----GCAT----GCCA-A-T-TC-AGT-----GTTCATG-AGTGA-AATTTAAT------TGATATTT----------AA---C-----AT--------T----TTA-TT--------T-T----T-AT-TTTATGATTNAAAAC-AGCG-AAA---T-----TACCA------TTT-ATAATT-TCACTATTTTNAACAGTGAAATTACCAAAAATAATTCACT--G-A--AAATCTC--------------TA---TAATTCATC-AAAAAG-CA-TAAA
Reference ( family-139 ) : ATGTTGGTTTCAGTGAAATATC-G-TTTTA-TTTTA---TCAC--AGNGA-GC-ACTGA---AATGGTATGGTCAC---------G-GTG------GCGAAGCCACAAGTG-A----GCAT----GCCA-A-T-TC-AGT-----GTTCATG-AGTGA-AATTTAAT------TGATATTT----------AA---C-----AT--------T----TTA-TT--------T-T----T-AT-TTTATGATTNAAAAC-AGCG-AAA---T-----TACCA------TTT-ATAATT-TCACTATTTTNAACAGTGAAATTACCAAAAATAATTCACT--G-A--AAATCTC--------------TA---TAATTCATC-AAAAAG-CA-TAAA
gi|1 : TA-TTTTAATTCCACCGAGAGA-GC-ACTGG--------------------------G-GTG------GCAAGGCTATAAGTA-A----GGAG----GCGACA-T-TT-AGT-----GGTCATG-AGTAA-ACTTCTAT------TGAT-TTT----------AAAGAC-----ACCAACGATAT----TTA-TT--------T-C----T-AT-TTTATGGTTAAAACC-AACG-AGC---T-----TATCA------TTG-ATAGTT-TCACGATTTTAAACAGTGAAATTATCAAAAATAAACCTCT--G-AG-AAATCTT--------------TA---TAATTCACC-AAAGGG-CA-TAAA
gi|10 : ctgattttattataagttaacttgggctaTGTTGGTTTCAGTGAATTATC-A-TTTTA-TTTCA---TTA---AGCAA-GC-A-TGG---AAT-----------------------TG------GCGAAGCCACGAGTG-A-----CAT----GCCA-A-T-TC-AGT-----TTTC-TGAAGTGA-AATTAAAA------TGATATTT----------TA---CCA---AT--------TG---TTG-TT--------CAT----T-A--TTTATGAataaatg
gi|11 : attaaaacagaaatat-A----GCAT----GCAG-A-T-TTTAGT-----ATTCATG-CGTGA-CCTTTAAT------TGATATTT----------CA---C-----AG--------A----ATGCTT--------T-T----T-CT-TTTATCA-TGAAAAC-TGTG-AAT---T-----AACCA------AAG-AAAAGG-TCACTATTTTCAACAATCAAATTGCCAAAcaatggaatacca
gi|12 : ATTTCAC------TGAAATTT----------AC---C-----CT--------T----TTA-TT--------T-T----TTAC-TTTATGAATAAAATC-AGCA-AAA---T-----TATCA------TTT-ATAATT-TCAATAATTGTAAGAGTGAGATTATCACAA-TAA--CAGT--G-A--TATTATC--------------AAAAATAATTCATC-AAAAAG-CA-TGAAtttacatttcatctgcaatcaaacct
gi|13 : taat----TTC-TT--------T-T----T-AT-TTTATGGTTTAAAAC-AGT--ATA---T-----TGCTA------ATT-ACAATTATAA--ATTTTTAACAATGAAATTAACAAAAGCAGTACACTTTG-A--TG-CCTC--------------CA---TAATTCATC-AAAAAG-CATTAAAacaatag
gi|14 : TGTTAGCTTCAGTGAAATATT-G-TTTT--TTTTA---TCATTGAGTGA-GC-ACAGACTTAGTGGTATATTCAT-------------------------GTCACAAGTG------GCA------CCG-A-C-TT-AGtaaat
gi|16 : attataaacatgaaatatagaataat----TTA-TT--------T-T----T-AT-TTCATGATTAAAAAC-AGTG-AAA---T-----TACCA------TAT-ATAATT-TCAC
gi|2 : taatttaATGTTGATTTTATTAAAATATT-G-TTTTA-TTTTA----CAC--AGGGA-GC-AGTGA---GGTGGTAAGGTCAC---------G--TG------ACAAAGCTGCAAGTG-A----GCAT----GCCA-A-TATC-AGT-----GTTCATG-AGTGA-AATTTAATATTGCATAATATTT----------AA---T-----AT--------T----TTA-TT--------C-T----T-AT-TTCATGATTGAAAAC-AGTA-AAA---T-----TACCA------TTT-ATAATT-TCACTACTTTAAACAATGAAATAACCACAAATATTTCACT--G-AAGAAATCTA--------------TA---TAATTCATC-AAAAAGACA-CAAA
gi|3 : TTAGTGAAATATC-ATTTTTA-TTTCA---T-AT--AGTGA-GC-ATT
gi|3 : ggaAGTG-A----GCATTTATATTA-A-T-TC---T------TTTATG---T-----TTTAAT------TGATACTTCACTGAAACCAA---C-----AA--------T------A-TT--------T-CCCTAT-AT-TTTATGATCGTAAAC-TGCA-GAA---T-----TACCAGTATACTTT-ATAATT-TCACTACTTCAAACTGTAAAATTACTAAAAATAAtatattaattcttttatgttttaattgatacttcactgaaaccaacaatatttccctatattttatgatcgtaaactgcagaattaccagtatactttataatttcactacttcaaactgtaaaattactaaaaataaataaaagataaatgttcagtcatctttgcttgtaacattttagaaaatgtaac
gi|4 : ggattagtgaaatatcatttttatttcatatCACAAATG-A----GCAA----GCTA-A-TATC-TGC-----GTT-AT------A-AATTTAAT------TGATATTTTACTAA----AA---CTAGCAAT--------TCC--TT--TT--------T-T----T-AA-TTTATGGTTGAAAGC-AGTACAAA---TACATGTACCA------TTTTATAACT-TCACTA-TTTCAATGGTGAAATTATCAAATATAATCCACT--A-AC-AAATATCTGTTTATATATACATG---TAATTCATT-TTAAAG-CA-TAAAataaaagataaatgttcagtcatctttgcttgtaacattttagaaaatgtaac
gi|5 : gtaccagtgaaatatTGTTGGTTTCAATGAAATGTT---TTTTA-TTTTA---TCA---AGTAA-GC-ACTGA---GATGGAATGGTCACAAGCAATAAG-TTGTAAGCAGCGAAGTTTCTAGTG-AGCTTGCAT----GCCA-AGT-TT-AGT-----GGTCATT-AGTGA-ATTTTAAT------TGATATTT----------aca
gi|5 : AAAAATAA---------------ATCTC--------------TA---TAATTCATC-AAAAAA-CA-TAAtattgaaaccaacaatttgctactttaaaaataaatctctataattcatcaaaaaacataa
gi|6 : tgttggtttcaatgaaatgttttttattttatcaagtaagcactgagatggaatggtcacaagcaataagttgtaagcagcgaagtttctagtgagcttgcatgccaagtttagtggtcattagtgaattttaattgatattttattgaaaccaacaatttgctactttTGAAATATC-C-TTTTAAGTTTA---TCA-----GGATGCCACTGA---AATGGTATGGTCAC---------ATGTG------TTGAAGCCAAAGATGGA----GCAT----GTCA-A-T-T------------TCACG-A----------AAC------C-----------------AG---C-----A----------------A-TT--------T-T----T-AT-TTCCTGATCAAAAAC-TGGG-AAA---A-----TACCA------CTC-ATAATT-TC-CTGCTTTTAACAGTGATATTA-TAGAAATAATTCAGT--G-A--GAATCTT-------------------TAATTAATC-AA
gi|7 : AGCCCTAAGTG-A----TAAT----GTCA-A-T-T------------TCATG-AATAA-AATTTAAT------TGATGTTTTACTGA----AA---C-----AA--------A----CAA-TT--------A-T----T-AA-TTT-TGGTTAAAAATGAAAA-AAA---A-----TACCA------TTTTATAATT-CCACTATATTAAACAGTGAAATTACCAAACATAAATCATC--GTAATAAATTTT-------------------TAATTCAT--AAAAAA-CA-TAAA
gi|8 : ATGTTTGTTTTAGTGAAATGTTAG-TCTTA-TGTCA---TCAC---GTGA-A--GCTGA---AATGTAACTGTCAC---------GTGTG------GAGAAGTCAGGAGTG-G----GCTT----GTTTTA-T-TC-AGTTAAGGGTTTCCC-GGTGA-AATTTAAT------TTAAACT-----------AA---C-----AT--------T----TTG-TT--------T-T------AT-TTTATGATATTAAAC-AGTT-AAA---C-----Ttttaaataaat
gi|9 : aaGTGACGATTTAAT------TGATATTT---------------C-----AT--------CGAAACTA-ATAACAAAAAT-A----T-ATATTTATGTTTTAAAAC-AGTG-AAAAGGG-----TA----------TT-ATTATT-TCACTATTTT-AACAGTGGAATTATCAAAAAGAATTTACT--G-A--GAATCTC--------------TA---TAA-TCATCAAAAAAG-CG-TAAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): TGATAAACTCACTTCTTTAAATGGTGAATTTATCAAGATATAATCCACCTTTTTTTCAATAAACCACCGAAAGGCATGAAATAAATGTTGATG
Alignments
lowQualScore : 111 2222 5555555555555555555555555555555555555 111111111111 6666666666666666666666666666666666666 111111111111111 111111111 111111 11 222 3333333333333333333
lowQualScore : 666 5 888 6666 1 5 5 1 9999999999999999999999999999999999999 888888 7777 7 3 7 999999999999 666 2 333 999999 6666666666666666666666666666666666666 33 111111111111111 3 3 1 3 999 222222222 000000 7 3 3 4 3 00 0 66 4 333 8888888888888888888 4 5 5
lowQualScore : ... . ... .... . . . . ..................................... ...... .... . . . ............ ... . ... ...... ..................................... .. ............... . . . . ... ......... ...... . . . . . .. . .. . ... ................... . . .
lowQualScore : 777 0 888 6666 0 0 0 4 3333333333333333333333333333333333333 222222 7777 3 6 3 555555555555 777 0 777 666666 5555555555555555555555555555555555555 22 444444444444444 1 1 0 3 888 777777777 555555 3 6 0 9 9 22 1 11 4 999 3333333333333333333 4 0 0
consensus : ATGTTGGTTTCAGTGAAATATC-G-TTTTA-TTTTA---TCAC--AGNGA-GC-ACTGA---AATGGTATGGTCAC---------G-GTG------GCGAAGCCACAAGTG-A----GCAT----GCCA-A-T-TC-AGT-----GTTCATG-AGTGA-AATTTAAT------TGATATTT----------AA---C-----AT--------T----TTA-TT--------T-T----T-AT-TTTATGATTNAAAAC-AGCG-AAA---T-----TACCA------TTT-ATAATT-TCACTATTTTNAACAGTGAAATTACCAAAAATAATTCACT--G-A--AAATCTC--------------TA---TAATTCATC-AAAAAG-CA-TAAA
Reference ( family-139 ) : ATGTTGGTTTCAGTGAAATATC-G-TTTTA-TTTTA---TCAC--AGNGA-GC-ACTGA---AATGGTATGGTCAC---------G-GTG------GCGAAGCCACAAGTG-A----GCAT----GCCA-A-T-TC-AGT-----GTTCATG-AGTGA-AATTTAAT------TGATATTT----------AA---C-----AT--------T----TTA-TT--------T-T----T-AT-TTTATGATTNAAAAC-AGCG-AAA---T-----TACCA------TTT-ATAATT-TCACTATTTTNAACAGTGAAATTACCAAAAATAATTCACT--G-A--AAATCTC--------------TA---TAATTCATC-AAAAAG-CA-TAAA
gi|1 : TA-TTTTAATTCCACCGAGAGA-GC-ACTGG--------------------------G-GTG------GCAAGGCTATAAGTA-A----GGAG----GCGACA-T-TT-AGT-----GGTCATG-AGTAA-ACTTCTAT------TGAT-TTT----------AAAGAC-----ACCAACGATAT----TTA-TT--------T-C----T-AT-TTTATGGTTAAAACC-AACG-AGC---T-----TATCA------TTG-ATAGTT-TCACGATTTTAAACAGTGAAATTATCAAAAATAAACCTCT--G-AG-AAATCTT--------------TA---TAATTCACC-AAAGGG-CA-TAAA
gi|10 : ctgattttattataagttaacttgggctaTGTTGGTTTCAGTGAATTATC-A-TTTTA-TTTCA---TTA---AGCAA-GC-A-TGG---AAT-----------------------TG------GCGAAGCCACGAGTG-A-----CAT----GCCA-A-T-TC-AGT-----TTTC-TGAAGTGA-AATTAAAA------TGATATTT----------TA---CCA---AT--------TG---TTG-TT--------CAT----T-A--TTTATGAataaatg
gi|11 : attaaaacagaaatat-A----GCAT----GCAG-A-T-TTTAGT-----ATTCATG-CGTGA-CCTTTAAT------TGATATTT----------CA---C-----AG--------A----ATGCTT--------T-T----T-CT-TTTATCA-TGAAAAC-TGTG-AAT---T-----AACCA------AAG-AAAAGG-TCACTATTTTCAACAATCAAATTGCCAAAcaatggaatacca
gi|12 : ATTTCAC------TGAAATTT----------AC---C-----CT--------T----TTA-TT--------T-T----TTAC-TTTATGAATAAAATC-AGCA-AAA---T-----TATCA------TTT-ATAATT-TCAATAATTGTAAGAGTGAGATTATCACAA-TAA--CAGT--G-A--TATTATC--------------AAAAATAATTCATC-AAAAAG-CA-TGAAtttacatttcatctgcaatcaaacct
gi|13 : taat----TTC-TT--------T-T----T-AT-TTTATGGTTTAAAAC-AGT--ATA---T-----TGCTA------ATT-ACAATTATAA--ATTTTTAACAATGAAATTAACAAAAGCAGTACACTTTG-A--TG-CCTC--------------CA---TAATTCATC-AAAAAG-CATTAAAacaatag
gi|14 : TGTTAGCTTCAGTGAAATATT-G-TTTT--TTTTA---TCATTGAGTGA-GC-ACAGACTTAGTGGTATATTCAT-------------------------GTCACAAGTG------GCA------CCG-A-C-TT-AGtaaat
gi|16 : attataaacatgaaatatagaataat----TTA-TT--------T-T----T-AT-TTCATGATTAAAAAC-AGTG-AAA---T-----TACCA------TAT-ATAATT-TCAC
gi|2 : taatttaATGTTGATTTTATTAAAATATT-G-TTTTA-TTTTA----CAC--AGGGA-GC-AGTGA---GGTGGTAAGGTCAC---------G--TG------ACAAAGCTGCAAGTG-A----GCAT----GCCA-A-TATC-AGT-----GTTCATG-AGTGA-AATTTAATATTGCATAATATTT----------AA---T-----AT--------T----TTA-TT--------C-T----T-AT-TTCATGATTGAAAAC-AGTA-AAA---T-----TACCA------TTT-ATAATT-TCACTACTTTAAACAATGAAATAACCACAAATATTTCACT--G-AAGAAATCTA--------------TA---TAATTCATC-AAAAAGACA-CAAA
gi|3 : TTAGTGAAATATC-ATTTTTA-TTTCA---T-AT--AGTGA-GC-ATT
gi|3 : ggaAGTG-A----GCATTTATATTA-A-T-TC---T------TTTATG---T-----TTTAAT------TGATACTTCACTGAAACCAA---C-----AA--------T------A-TT--------T-CCCTAT-AT-TTTATGATCGTAAAC-TGCA-GAA---T-----TACCAGTATACTTT-ATAATT-TCACTACTTCAAACTGTAAAATTACTAAAAATAAtatattaattcttttatgttttaattgatacttcactgaaaccaacaatatttccctatattttatgatcgtaaactgcagaattaccagtatactttataatttcactacttcaaactgtaaaattactaaaaataaataaaagataaatgttcagtcatctttgcttgtaacattttagaaaatgtaac
gi|4 : ggattagtgaaatatcatttttatttcatatCACAAATG-A----GCAA----GCTA-A-TATC-TGC-----GTT-AT------A-AATTTAAT------TGATATTTTACTAA----AA---CTAGCAAT--------TCC--TT--TT--------T-T----T-AA-TTTATGGTTGAAAGC-AGTACAAA---TACATGTACCA------TTTTATAACT-TCACTA-TTTCAATGGTGAAATTATCAAATATAATCCACT--A-AC-AAATATCTGTTTATATATACATG---TAATTCATT-TTAAAG-CA-TAAAataaaagataaatgttcagtcatctttgcttgtaacattttagaaaatgtaac
gi|5 : gtaccagtgaaatatTGTTGGTTTCAATGAAATGTT---TTTTA-TTTTA---TCA---AGTAA-GC-ACTGA---GATGGAATGGTCACAAGCAATAAG-TTGTAAGCAGCGAAGTTTCTAGTG-AGCTTGCAT----GCCA-AGT-TT-AGT-----GGTCATT-AGTGA-ATTTTAAT------TGATATTT----------aca
gi|5 : AAAAATAA---------------ATCTC--------------TA---TAATTCATC-AAAAAA-CA-TAAtattgaaaccaacaatttgctactttaaaaataaatctctataattcatcaaaaaacataa
gi|6 : tgttggtttcaatgaaatgttttttattttatcaagtaagcactgagatggaatggtcacaagcaataagttgtaagcagcgaagtttctagtgagcttgcatgccaagtttagtggtcattagtgaattttaattgatattttattgaaaccaacaatttgctactttTGAAATATC-C-TTTTAAGTTTA---TCA-----GGATGCCACTGA---AATGGTATGGTCAC---------ATGTG------TTGAAGCCAAAGATGGA----GCAT----GTCA-A-T-T------------TCACG-A----------AAC------C-----------------AG---C-----A----------------A-TT--------T-T----T-AT-TTCCTGATCAAAAAC-TGGG-AAA---A-----TACCA------CTC-ATAATT-TC-CTGCTTTTAACAGTGATATTA-TAGAAATAATTCAGT--G-A--GAATCTT-------------------TAATTAATC-AA
gi|7 : AGCCCTAAGTG-A----TAAT----GTCA-A-T-T------------TCATG-AATAA-AATTTAAT------TGATGTTTTACTGA----AA---C-----AA--------A----CAA-TT--------A-T----T-AA-TTT-TGGTTAAAAATGAAAA-AAA---A-----TACCA------TTTTATAATT-CCACTATATTAAACAGTGAAATTACCAAACATAAATCATC--GTAATAAATTTT-------------------TAATTCAT--AAAAAA-CA-TAAA
gi|8 : ATGTTTGTTTTAGTGAAATGTTAG-TCTTA-TGTCA---TCAC---GTGA-A--GCTGA---AATGTAACTGTCAC---------GTGTG------GAGAAGTCAGGAGTG-G----GCTT----GTTTTA-T-TC-AGTTAAGGGTTTCCC-GGTGA-AATTTAAT------TTAAACT-----------AA---C-----AT--------T----TTG-TT--------T-T------AT-TTTATGATATTAAAC-AGTT-AAA---C-----Ttttaaataaat
gi|9 : aaGTGACGATTTAAT------TGATATTT---------------C-----AT--------CGAAACTA-ATAACAAAAAT-A----T-ATATTTATGTTTTAAAAC-AGTG-AAAAGGG-----TA----------TT-ATTATT-TCACTATTTT-AACAGTGGAATTATCAAAAAGAATTTACT--G-A--GAATCTC--------------TA---TAA-TCATCAAAAAAG-CG-TAAA
blockSeqs : AT A . TTGA C T C C GATGGAATGGTCACAAGCAATAAGTTGTAAGCA AGCTT TTAT T G A CAGTTAAGGGT AAG G CGA ATTGCA TACTAAAACTAGCAATTCCT GC AACAAAAATA T A G G TAC TACATG GTATAC T A T C C TA TT T AGA TGTTTATATATACATG A A T
blockSeqs : AG . . CA T . . G AATGGTATGGTCACATGTG GA . . . A TTAGTAT CG G AA . CACTGAAACCAACAAT G TCCCTA . . A . TG AGGG . T . A T T TT . . ATA AAAAA . . .
blockSeqs : G . . TA G . . T AATGTAACTGTCACGTGTG A . . . . CAGTTT AG G CC . TACTGAAACAAAC A CAT . . T . CA T . . . T T A TC . . CA CA . . .
blockSeqs : G . . A T . . C CTTAGTGGTATATTCAT A . . . . CAGTGT AG G AA . TACCAATTGT C TT . . A . TG T . . . C A C TT . . T TA . . .
blockSeqs : C . . A T . . C GGTGGTAAGGTCACGTG A . . . . CTGCGT AA A AA . CATCGAAAC A TT . . G . TA T . . . C A C AT . . T TA . . .
blockSeqs : . . . C G . . C AATTG A . . . . TAGTGG GG G AT . CACAGAA A TT . . G . CA T . . . C C T TT . . G TA . . .
blockSeqs : . . . T . . . A . . . . CTT A G AA . ACCCTTT A TT . . G . GG T . . . T T C . . . G . . . .
blockSeqs : A . . . . . . . AA . AATATTT A CT . . A . AA T . . . T A T . . . . . .
blockSeqs : G . . . . . . . . . AACATTT A TT . . A . TT A . . . . . .
blockSeqs : . . . . . . . . AGCA G TT . . T . TG A . . .
blockSeqs : . A AT . . T . T C
blockSeqs : . TT . .
blockSeqCons : *** TA** AATGGNACGGTCACTGTG******************* AACATTT****************************** N**
originalCons : ATGTTGGTTTCAGTGAAATATC-G-TTTTA-TTTTA---TCAC--AGNGA-GC-ACTGA---AATGGTATGGTCAC---------G-GTG------GCGAAGCCACAAGTG-A----GCAT----GCCA-A-T-TC-AGT-----GTTCATG-AGTGA-AATTTAAT------TGATATTT----------AA---C-----AT--------T----TTA-TT--------T-T----T-AT-TTTATGATTNAAAAC-AGCG-AAA---T-----TACCA------TTT-ATAATT-TCACTATTTTNAACAGTGAAATTACCAAAAATAATTCACT--G-A--AAATCTC--------------TA---TAATTCATC-AAAAAG-CA-TAAA
finalCons : ATGTTGGTTTCAGTGAAATATC-G-TTTTA-TTTTA---TCATA--GNGA-GC-ACTGAAATGGNACGGTCACTGTG-------------------GCGAAGCCACAAGTG-A----GCAT----GCCA-A-T-TC-AGT-----GTTCATG-AGTGA-AATTTAAT------TGATATTTAACATTT------------------------------TA-TT--------T-T----T-AT-TTTATGATTNAAAAC-AGCG-AAA---T-----TACCA------TTT-ATAATT-TCACTATTTTNAACAGTGAAATTACCAAAAATAATTCACT--G-AN--AATCTC--------------TA---TAATTCATC-AAAAAG-CA-TAAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): TGATAAACTCACTTCTTTAAATGGTGAATTTATCAAGATATAATCCACCTTTTTTTCAATAAACCACCGAAAGGCATGAAATAAATGTTGATG
Alignments
lowQualScore : 2222 2222 555555555555555555555555555555 1111 111111111111 6666666666666666666666666666666666666 111111111111111 111111111 111111 11 1111111111111 333333333333333333
lowQualScore : 0000 5 6666 1 5 5 1 444444444444444444444444444444 2222 888888 7777 7 3 7 999999999999 666 2 333 999999 6666666666666666666666666666666666666 33 111111111111111 3 3 1 3 999 222222222 000000 7 3 4 3 00 0 6666666666666 333333333333333333 4 5 5
lowQualScore : .... . .... . . . . .............................. .... ...... .... . . . ............ ... . ... ...... ..................................... .. ............... . . . . ... ......... ...... . . . . .. . ............. .................. . . .
lowQualScore : 8888 0 2222 0 0 0 4 666666666666666666666666666666 1111 222222 7777 3 6 3 555555555555 777 0 777 666666 5555555555555555555555555555555555555 22 444444444444444 1 1 0 3 888 777777777 555555 3 6 9 9 22 1 7777777777777 222222222222222222 4 0 0
consensus : ATGTTGGTTTCAGTGAAATATC-G-TTTTA-TTTCATCAC--AGNGA-GC-ACTGA---AATGGTATGGTCAC-----------TGT----GGCGAAGCCACAAGTG-A----GCAT----GCCA-A-T-TC-AGT-----GTTCATG-AGTGA-AATTTAAT------TGATATTT----------AA---C-----AT--------T----TTA-TT--------T-T----T-AT-TTTATGATTNAAAAC-AGCG-AAA---T-----TACCA------TTT-ATAATT-TCACTATTTTNAACAGTGAAATTACCAAAAATAATTCACT--G--A--NA---ATCT-----------C-TA---TAATTCATC-AAAAAG-CA-TAAA
Reference ( family-139 ) : ATGTTGGTTTCAGTGAAATATC-G-TTTTA-TTTTATCAT--AGNGA-GC-ACTGA---AATGGNACGGTCAC-----------TGT----GGCGAAGCCACAAGTG-A----GCAT----GCCA-A-T-TC-AGT-----GTTCATG-AGTGA-AATTTAAT------TGATATTT----------AA---C-----AT--------T----TTA-TT--------T-T----T-AT-TTTATGATTNAAAAC-AGCG-AAA---T-----TACCA------TTT-ATAATT-TCACTATTTTNAACAGTGAAATTACCAAAAATAATTCACT--G--A--NA---ATCT-----------C-TA---TAATTCATC-AAAAAG-CA-TAAA
gi|1 : ATAT----TTTAA-TTCCACCG---AGAGA-GC-ACTG------------GG----------------GT----GGCAAGGCTATAAGTA-A----GGAG----GCGACA-T-TT-AGT-----GGTCATG-AGTAA-ACTTCTAT------TGAT-TTT----------AAAGAC-----ACCAACGATAT----TTA-TT--------T-C----T-AT-TTTATGGTTAAAACC-AACG-AGC---T-----TATCA------TTG-ATAGTT-TCACGATTTTAAACAGTGAAATTATCAAAAATAAACCTCT--G--AG-AA---ATCT-----------T-TA---TAATTCACC-AAAGGG-CA-TAAA
gi|10 : ctgattttattataagttaacttgggctTGTTGGTTTCAGTGAATTATC-A-TTTTA-TTTCATTA---AGCAA-GC-A-TGG---AAT------------------------T----GGCGAAGCCACGAGTG-A-----CAT----GCCA-A-T-TC-AGT-----TTTC-TGAAGTGA-AATTAAAA------TGATATTT----------TA---CCA---AT--------TG---TTG-TT--------CAT----T-A--TTTATGAataaatg
gi|11 : attaaaacagaaatat-A----GCAT----GCAG-A-T-TTTAGT-----ATTCATG-CGTGA-CCTTTAAT------TGATATTT----------CA---C-----AG--------A----ATGCTT--------T-T----T-CT-TTTATCA-TGAAAAC-TGTG-AAT---T-----AACCA------AAG-AAAAGG-TCACTATTTTCAACAATCAAATTGCCAAAcaatggaatacca
gi|12 : ATTTCAC------TGAAATTT----------AC---C-----CT--------T----TTA-TT--------T-T----TTAC-TTTATGAATAAAATC-AGCA-AAA---T-----TATCA------TTT-ATAATT-TCAATAATTGTAAGAGTGAGATTATCACAA-TAA--CAGT--G--A--TA---TTAT-----------C-AAAAATAATTCATC-AAAAAG-CA-TGAAtttacatttcatctgcaatcaaacct
gi|13 : taat----TTC-TT--------T-T----T-AT-TTTATGGTTTAAAAC-AGT--ATA---T-----TGCTA------ATT-ACAATTATAA--ATTTTTAACAATGAAATTAACAAAAGCAGTACACTTTG--A--TG----CCT-----------C-CA---TAATTCATC-AAAAAG-CATTAAAacaatag
gi|14 : TGTTAGCTTCAGTGAAATATT-G-TTTT--TTTTATCATTGAGTGA-GC-ACAGACTTAGTGGTATATTCA------------TGT------------CACAAGTG------GCA------CCG-A-C-TT-AGtaaat
gi|16 : attataaacatgaaatatagaataat----TTA-TT--------T-T----T-AT-TTCATGATTAAAAAC-AGTG-AAA---T-----TACCA------TAT-ATAATT-TCAC
gi|2 : taatttaATGTTGATTTTATTAAAATATT-G-TTTTA-TTTTA-CAC--AGGGA-GC-AGTGA---GGTGGTAAGGTCAC------------GT----GACAAAGCTGCAAGTG-A----GCAT----GCCA-A-TATC-AGT-----GTTCATG-AGTGA-AATTTAATATTGCATAATATTT----------AA---T-----AT--------T----TTA-TT--------C-T----T-AT-TTCATGATTGAAAAC-AGTA-AAA---T-----TACCA------TTT-ATAATT-TCACTACTTTAAACAATGAAATAACCACAAATATTTCACT--G--AAGAA---ATCT-----------A-TA---TAATTCATC-AAAAAGACA-CAAA
gi|3 : TTAGTGAAATATC-ATTTTTA-TTTCAT-AT--AGTGA-GC-ATT
gi|3 : ggaAGTG-A----GCATTTATATTA-A-T-TC---T------TTTATG---T-----TTTAAT------TGATACTTCACTGAAACCAA---C-----AA--------T------A-TT--------T-CCCTAT-AT-TTTATGATCGTAAAC-TGCA-GAA---T-----TACCAGTATACTTT-ATAATT-TCACTACTTCAAACTGTAAAATTACTAAAAATAAtatattaattcttttatgttttaattgatacttcactgaaaccaacaatatttccctatattttatgatcgtaaactgcagaattaccagtatactttataatttcactacttcaaactgtaaaattactaaaaataaataaaagataaatgttcagtcatctttgcttgtaacattttagaaaatgtaac
gi|4 : ggattagtgaaatatcatttttatttcatatCACAAATG-A----GCAA----GCTA-A-TATC-TGC-----GTT-AT------A-AATTTAAT------TGATATTTTACTAA----AA---CTAGCAAT--------TCC--TT--TT--------T-T----T-AA-TTTATGGTTGAAAGC-AGTACAAA---TACATGTACCA------TTTTATAACT-TCACTATTT-CAATGGTGAAATTATCAAATATAATCCACT--A--A--CAAATATCTGTTTATATATACATG---TAATTCATT-TTAAAG-CA-TAAAataaaagataaatgttcagtcatctttgcttgtaacattttagaaaatgtaac
gi|5 : gtaccagtgaaatatTGTTGGTTTCAATGAAATGTT---TTTTA-TTTTATCA---AGTAA-GC-ACTGA---GATGGAATGGTCACAAGCAATAAGTTGTAAGCAGCGAAGTTTCTAGTG-AGCTTGCAT----GCCA-AGT-TT-AGT-----GGTCATT-AGTGA-ATTTTAAT------TGATATTT----------aca
gi|5 : AAAAATAA-------------------ATCT-----------C-TA---TAATTCATC-AAAAAA-CA-TAAtattgaaaccaacaatttgctactttaaaaataaatctctataattcatcaaaaaacataa
gi|6 : tgttggtttcaatgaaatgttttttattttatcaagtaagcactgagatggaatggtcacaagcaataagttgtaagcagcgaagtttctagtgagcttgcatgccaagtttagtggtcattagtgaattttaattgatattttattgaaaccaacaatttgctactttTGAAATATC-C-TTTTAAGTTTATCA-----GGATGCCACTGA---AATGGTATGGTCACA----------TGT----GTTGAAGCCAAAGATGGA----GCAT----GTCA-A-T-T------------TCACG-A----------AAC------C-----------------AG---C-----A----------------A-TT--------T-T----T-AT-TTCCTGATCAAAAAC-TGGG-AAA---A-----TACCA------CTC-ATAATT-TC-CTGCTTTTAACAGTGATATTA-TAGAAATAATTCAGT--G--A--GA---ATCT-----------T------TAATTAATC-AA
gi|7 : AGCCCTAAGTG-A----TAAT----GTCA-A-T-T------------TCATG-AATAA-AATTTAAT------TGATGTTTTACTGA----AA---C-----AA--------A----CAA-TT--------A-T----T-AA-TTT-TGGTTAAAAATGAAAA-AAA---A-----TACCA------TTTTATAATT-CCACTATATTAAACAGTGAAATTACCAAACATAAATCATC--GTAA--TA---AATT-----------T-T----TAATTCAT--AAAAAA-CA-TAAA
gi|8 : ATGTTTGTTTTAGTGAAATGTTAG-TCTTA-TGTCATCAC---GTGA-A--GCTGA---AATGTAACTGTCACG----------TGT----GGAGAAGTCAGGAGTG-G----GCTT----GTTTTA-T-TC-AGTTAAGGGTTTCCC-GGTGA-AATTTAAT------TTAAACT-----------AA---C-----AT--------T----TTG-TT--------T-T------AT-TTTATGATATTAAAC-AGTT-AAA---C-----Ttttaaataaat
gi|9 : aaGTGACGATTTAAT------TGATATTT---------------C-----AT--------CGAAACTA-ATAACAAAAAT-A----T-ATATTTATGTTTTAAAAC-AGTG-AAAAGGG-----TA----------TT-ATTATT-TCACTATTTT-AACAGTGGAATTATCAAAAAGAATTTACT--G--A--GA---ATCT-----------C-TA---TAA-TCATCAAAAAAG-CG-TAAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): TGATAAACTCACTTCTTTAAATGGTGAATTTATCAAGATATAATCCACCTTTTTTTCAATAAACCACCGAAAGGCATGAAATAAATGTTGATG