lowQualScore : 1111 111111 11 22222 2222222222222 1111 22 222 1 1 1 2222222 444444444444444444444 2222222222 7777777777777777777777777777777777 22222 111 11 111 33333333
lowQualScore : 3 7777 2 55 9 1 333333 0 55 22222 66 77 1 1 3 1 666 4444444444444 3 44 8 3 555 3 3333 3 5 8 2 1 0 4 1 77 999 33 00 666 55 555 7 55 0 2 0 0 0 1 44 2 1 55 0000000 3 8888 3 3 66 8 4 5 1 1 33 4 4 4 11 222222222222222222222 66 8888888888 4 3333333333333333333333333333333333 6 5 7 777 22222 666 66 0 33 7 3 444 2 8 00000000 3 88 1
lowQualScore : . .... . .. . . ...... . .. ..... .. .. . . . . ... ............. . .. . . ... . .... . . . . . . . . .. ... .. .. ... .. ... . .. . . . . . . .. . . .. ....... . .... . . .. . . . . . .. . . . .. ..................... .. .......... . .................................. . . . ... ..... ... .. . .. . . ... . . ........ . .. .
lowQualScore : 3 6666 5 77 9 6 555555 4 00 88888 33 00 0 1 4 0 111 3333333333333 8 22 8 6 555 6 3333 3 9 3 7 4 8 0 6 77 000 77 11 555 77 555 1 11 3 5 5 9 0 7 66 8 4 66 7777777 3 5555 2 8 44 2 5 8 0 2 11 9 0 0 99 111111111111111111111 00 4444444444 4 7777777777777777777777777777777777 4 9 7 888 22222 666 99 8 88 3 8 000 2 0 66666666 2 00 4
consensus : TAGGAGGTCTGTAAAATA--C-TCCTAAN-AGTATATGTTTGT----TNTTGA--GTAATA--T-TCGACCCATATGCATTC-NAGNNGATTGATTTCGAGGTCGTTTCTACGTTTGTAG------TGTAT-TGTNTCTTTA-ATG--AA-CAN--NATAACACCACCGTGGCTATCTCCAACGCGATCTTTTCTTNTTGGTTTGT-GAAA--NGANGGAAGCATT-ATATCATCAGTTGA-GCAACAGNATCATTGAGCCAAGTTTCGGAAAAAGTTAGTATATC--AAANCCATATAG-TTCGG-----A-GT-AGATGATATCNAATTTGTGNTNNATACTTTGAACGTTGTAGTGAACNAANGACAAATTATNCGAAAAGTCTAGAGCT-T-CGAAATTA--C------GAT-GA--G---ATGAGGNAGATTGAGTACTA-CTGACAGAGCTTG-TATCAG-TGCAAGT--AG-CCN-ATGGGGCCTGGGTTTGGGTGNACATCTCCTGA---TAA-----CAACAATATGACCGATAG--CCAAGTTAGGAAAGTGATCGCAAATA---TCACAG-ATGCAATG-------TATTTAGTNAAGACTATATTTTCTGTGTATGTTTT
Reference ( gi|19193 ) : TAGGAGGTCTGTAGAATA--A-TCCTAAT-AGTAAACGTTTGT----TATTGA--GTAATA--TATCGACCCATATACATTC-AAGTGGGTTGATTTCAAGATCGTGTCTACGTTTGTAG------TGTAT-TGTGTCTTTA-ATG--AA-TAA--CATGACCCCTCCGTGGTTGTCTCCAATGCGATCTTTTCTTTCTGGTTTGT-TAAA--AGAAGGAAGCATC-ATATCATCAGTTGA---AACAGAATCATCGAGCCATGTTTCAGTAAAAGTAAGTATATC--AAAACCATATAA-TTCGG-----A-GT-AGATGATATCCAATTTGTGCTTTATACTCTGAACGTTGTAGTGTACTAACGACAAATTATTCGAAAAATCTAGAGCT-T-CGAAATTA--C------AAT-GA--G---ATGAGGTGGATTGAGTACTA-CTGACAGAGCTTG-TATCAGATATAAGT--AGTTCA-ATGGGGCCTGGGTTTGGGTGTACATCTCCTGA---TAA-----CAACAATATGACCGATAG--CCAAGTTAGGAAAGTGATCGCAAATA---TCATAG-ATGCAATG-------CATTTAGTCAAGTCTATATTTTCTGTGTATGTTTT
gi|19194 : TAGGAGGTCTGTAGAATA--A-TCCTAAT-AGTAAACGTTTGT----TATTGA--GTAATA--TATCGACCCATATACATTC-AAGTGGGTTGATTTCAAGATCGTATCTACGTTTGTAG------TGTAT-TGTGTCTTTA-ATG--AA-TAA--CATGACCCCTCCGTGGTTGTCTCCAATGCGATATTTTCTTTCTGGTTTGT-TAAA--AGAAGGAAGCATC-ATATCATCAGTTGA---AACAGAATCATCGAGCCATGTTTCAGTAAAAGTAAGTATATC--AAAACCATATAA-TTCGG-----A-GT-AGATGATATCCAATTTGTGCTTTATACTCTGAACGTTGTAGTGTACTAACGACAAATTATTCGAAAAATCTAGAGCT-T-CGAAATTA--C------AAT-GA--G---ATGAGGTGGATTGAGTACTA-CTGACAGAGCTTG-TATCAGATGTAAGT--AGTTCA-ATGGGGCCTGGGTTTGGGTGTGCATCTCCTGA---TAA-----CAACAATATGACCGATAA--CCAAGTTAGGAAAGTGATCGCAAATA---CCATAG-ATGCAATG-------CATTTAGTCAAGTCTATATTTTCTGTGTATGTTTT
gi|19195 : TAGGAGGTCTGTAGAATA--C-TCCTAAT-AGTCAACGTTTGT----TATTGA--GTAATA--TATCGACCCATATACATTC-AAGTGGGTTGATTTCAAGATCGTGTCTACGTTTGTAG------TGTAT-TGTGTCTTTA-ATG--AA-TAG--CATGACCCCTCCGTGGTTATCTCCAATGCGATCTTTTCTTTCTGGTTTGT-TAAA--AGAAGGAAGCACC-ATATCATCAGTTGA---AACAGAATCATCGAGACATGTTTTAGTAAAAGTAAGTATATC--AAAACCATATAG-TTCGG-----A-GT-AGATGATATCCAATTTGTGCTTTATACTCT-AACGTTGTAGTGTAATAACGACAAATTATTCGAAAAATCTAGAGTT-T-CGAAATTA--C------AAT-GA--G---ATGAGGTGGATTGAGTACTA-CTGACAGAGCTTG-TATCAGACGTAAGT--AGTTCA-ATGGGGCCTGGGTTTGGGTGTACATCTCCTGA---TAA-----CAACAATATGACCGATAG--CCAAGTTAGGAAAGTGATCGCAAATA---TCATAG-ATACAATG-------TATTTAGTCAAGTCTATATTTTCTATGTATGTTTT
gi|19196 : TAGAAGGTCTGTAGAATA--C-TCCTAAT-AGTAAACGTTTGT----TATTGA--GTAATA--TATCGACCCATATACATTC-AAGTGGGTTGATTTCAAGATCGTGTCTACGTTTGTAG------TGTAT-TGTGTCTTTA-ATG--AA-TAA--CATGACCC-TCCGTGGTTGTCTCCAATGCGATCTTTTCTTTCTGGTTTGT-TAAA--AGAAGGAAGCACC-ATATCATCAGTTGA---AACAAAATCATCGAGCCATGTTTCAGTAAAAGTAAGTATATC--AAAACCATATAG-TTCGG-----A-GT-AGATGATATCCAATTTGTGCTTTATACTCTGAACGTTGTAGTGTACTAATGACAAATTATTCGAAAAATTTAGAGCT-T-CGCAATTA--C------AAT-GA--G---AGGAGGTAGAATGAGTACTA-CTGACAGAGCTTG-TATCAGATGGAA-T--AGTTCA-ATGGTGCCTGGGTTTGGGTGTACATCTCCTGA---TAA-----CAACAATATGACCGATAG--CCAATTTAGGAAAGTGATCGCAAATA---TCAAAA-ATGCAATG-------TATTTAGTTAAGATTACATTTCCTGTGTATGTTTT
gi|19197 : TAGGGGGTCAGTAATACA--G-TCCAAAT-AATATATGTTTAT----GTTTGA--TTATAA--TTTCGATCAATATACATTT-AATTGCATGGGGTTCAAGGTCCTTTCTACGTTTGTAA------TATACATAATTATTTACATA--AAGCAA--C---ACACCACCATGACTGCTATCAACACGATCTTTTCTCTCGGGATT-T-TAAA--AGGAATACAAATTAAGGTCATGAGATGA---TATTG--T--TTG------GTTTCTGAAAAAGCCAGAATATT--AAAATCACTTAG-TTCGGT----ACGT-AG-T-ATATCAAGTTTGTTGTAAATGCTTTGGACATTGTAGTGAACGAATGACAAGTGTTTTGATAGGCCTA------T-TG-AATTA--CTCGCAGAGT-AA--GAAAATGAGGAAG-TT--GTACTATTTGAC-------G-T--------CAAG----------ACTGGGCCGGGGTTAGGGTGCACATCTCCTGA---TAC-----TAACACTAGTACAAATAA--CCAAGCT
gi|19198 : GGAGGTCTGTAAAAAA--C-TCCTAAG-AGTATATGTCTGT----GCTTAATAGTAAT---T-TCAACCCATACGCATTC-TAGACGATTGATTTCTAAGTCATTTCTGTGAGAAAAA------TGAAT-TGTCTCTTTA-ATA--TA-CAT--AATAACACCACCGTA----TCCCCAATGCGATCTTTTCTTATTGGTTTAT-GGAA--TGATGGAA--ATT-CTA-GATCAGCTGACGCAACAGTATCATTAAGCCAAGTTTCGGAGAATGTTAATATGTC--AAACCCATACAG-TTCAG-----A-GT-AGATTGTATCTAATTTGTATTTGATACTTTGAACATTATAATGCACAAGAGAAAGATTATGTGAAAAGTCGAAGGCT-T-CCAAACTA--CCT----GATAGG--A---ACGAGGAAGA-TGAA----A-CTG--AGA---TGTTATT---TGCAATTG-AGCCTACAT--GACCTGGGTTTGGGTGAATATCTCC--A---CAAGTCAGCAACAGAATGA
gi|19199 : GGAGGTCTGTAGAAAA--C-TCCTAAG-AGTATATGTCTGTACGTTAT--A--GTAAT---T-TCAACCCATATGCATTC-TAGACGATTGATTTCTAAGTCATTTCTACG-----AGAAAAATTGAAT-TGTCTTTTTA-ATA--TA-CAT--AATAACACCACCGTGGATATCTCCAATGCGATCTGTTCTTATTGGTTTAT-GGAA--TGCTGGAA--ATT-CTAT-ATCAGCTGACGCAACAGTATCATTAATCCAAGTTTCGGAGAATGTTTATATATC--AAATCCATACAG-TTCAG-----A-GT-AGATTGTATCTTATCTATATTTGATACTTTGAACATTATAACGAACAAGAGAAAGATTATATGAAAAGTCCAAGGCT-T-CCAAACTATCT------GATAGG--A---ACGAGGAAGA-TGAA----A-CTG--AGA---TGTTATT---TACAGTT--GGGCCT-ATAGGACATGGGTTTGGGTGAATATATCC--A---CAAGTCAGCAATAACATGA---AGGG--CCATGTTAG--CAGTGAT
gi|19200 : GGAGGTCTGTAAAATA--C-TCC-AATGAGAATATGTCTG-----TGTTCA--ATAGTAAGT-TCAACCCATATGCATTC-TAGACGATTGATTTCTAAGTCATTTCTACGAGAAAAA------TGAAT-TGTATCTTTA-ATG--TA-CAT--AATAATACCACCGCGGCTATCTCCAACGCGATCTTTTCTTATTGGTTTAT-GGAA--CGCTGGGA--ATT-CTA-GATCAGATGATGCAATAGTATCATTAAGCCAAGTTTCAGAGAAAGCTAATATATC--AAATCCATATAG-TTCAG-----A-GTAAAATG-TATCTAATTTATATCTAATACTTTGAACATTATAATGAACAAGAGAAAGACGATGTGAAAAGTCCAAGGCT-T-TCAAACTAT-C------TGT-AAAGG---ATGAGGTTGA-TGAA----A-CTG--AG---TTG-T-T--GGTAACAGTTGAG-CCT-ATAGGACCTAGGTTTGGGTGAATATCTCCACA---AGA-----CAGCAGTAGAAT--ATAGGTCCATGTAAG--AAGTG-TTGTAAA-------ACAA-ACGGAACGTATGAAATATTTGGTAAAAAATATATTATCT
gi|19201 : GGAGGTCTGTAAAATA--C-TCCTAAG-AGTATATGTGTGT----GTTTAATTGTAAT---T-TCAACCCAAATGCATCC-CAGATGATTGGTTTCTAGGTCATTTCTACGAGAAAAA------TGAAC-TACCTCTTTA-ATGTTAA-TAA--TA--ACACCACCGCGGCTAACTCCAACGCGATCTTTTCTTATTGGTTTAC-GGAA--TGCTGGAA--ATT-CTAG-ATCAGCTGACGCAACAGTATCATTAAGTCAAGTTACGGAGAATGTTAATAAATC--AAACCCATATAG-TTCAG-----A-GT-AAACTGTATCTAATTTACATTTGATACTTTGAACATTAAAATGAACAAAAGAAAGGTGATGTAAAAAGTCCAAA-CTATGTGAAAT------------AT-AT--G---ATGAGGTAGAT-GAA----A-CTGA--GA------TGTCAGTTGCAATT--GGGCCT-GTAGGACCTGGGTTTTGGTGAATATCTCCAGAAGTCAA-----CAATAAAATGA---ATAA--CCATGTTAGG--AGTG-TTGTAAACAAACTGACCGTATGAAAT---------ATTTGGTAAAAATTATATTATCT
gi|19203 : GGAGGTCGGTAAACTA--C-ACAAAGG-AGTATATGTTTGT----TATTAA--GTGAAA--TATCGATCCAGATACATTCTAAACAGTTTAA-TTCGAGATCTAGCCTGCGTTTGTA-------TGTAA-AGT-TCTT---ATA--TA-TAC--AATAACTCAACCATGACTACCACCATAACGGTATTTCCTTTTAGATTTTT-GAAA--TGACAGAATAAGT-AGTTCTTCGGTAGG---TATGGATTCATGTAACCAAGTTTCGGAGAATGTTAGGATGTC--GAATTGAT-TAAGTTCTGCACTAA-GC-AG-----GTCTAGTTTATAGCGTAAACTTTGGACATTATAATGAATTAAAGATAAGTTAT
gi|19202 : GGGGGTCTGTA--ATACCG-TCCAAAT-AATATATGTTTAT----GTTTGA--TTATAA--TTTCGATCCATATACATTC-AATTGCATGGGGTTCAAGGTCCTTTCTACGTTTGTAA------TGTA
gi|19204 : AGGTCTGTAAAAAA--ACTCCTGAA-AATATATGTCTGT----GCTTAATAGTAAT---T-TCAACCCATACGCATTC-TAGACGGTTGATTTCGAAGTATTTTCTACG-----AGAAAAACTA-AT-TGTATCTTTA-ATA--AA-CAT--AATAACACCACCGTGACTATCTTCAATGCGATCTTTTCTTATTGGTTTG
gi|19205 : GAGTTCGAGGTCAGGTCAAAGGATATAG------TGTA-----------A-A-G--AA-TAAGCTATAACACCTCCGTGGCTGCCACCGATCCGGTCTTTACGTTCCGGTATGGATAAGTTGGAA--AAGCA---ATGTCATCAGTCGG---AATAGATTCATTTAGCCAAGATTCTGAAAAAATTAAAACGTC--AAAGTGAAAAAG-TTCTG-----T-TT-TCAACAAGTCTAGTTTGGGTAATATACTCTGGCTGCTGTAGTGAATGATTGATACATTATGAGAGAAATCGAGAG
gi|19206 : ACCCTACCATGGTTATCGCCAAAACGGT-TTTACGGATTGGTTTGT-GAAA--ACCAGGGACAATT-ATGTCGTCAGTGGA---GATGGCGTTGTTTAGCCAAGTTTCAGAAAAGGTCAGAACATCGGAGGACC--CCAA-GTCGGCT---G-CT-AG-TGA-GTCAACCTTATGATACAGGCTTTGTACATTGTAGTGAACTACCGA
gi|19207 : GCCAAGTTTCTGAAAAAGCCAGAATATC--AAAATTACTTAG-TTCGGT----ACGT-AGA--ATATCAAGTTTGTTGTAAATGCTTTGGACATTGTAGTGAACGAATGACAAGTGTTTTGACAGGTCTA---CT-----GAATTA--CTCGCAGAGT-AA--GAAAATGAGGAAG-TTG-----TA-CTG---GAATTTG--A-CGG---CAAG----------ACTGGGCCAGGGTTAGGGTGCACATCTCCTGA---TAA-----TAACACTAATACAAATAA--CCAA
gi|19208 : TGATATCCAACTTGTGCTGTATACTCTGAACGTTGTAGTGTACTAATTACAAATAACTCGAGAAATCTAGAGCT-T-
Alignments
lowQualScore : 111 22 22222 111111 2222 333 1111111 11 1111111111111 1111 5555555555555555555555555555555555 22222 111 111 2222222
lowQualScore : 3 44 1 000 3 22 44 88888 1 22 5 3 2 999 0 777777 2 3 5 3 44 3 77 4 1 555 3 1 1 555 4444 3 4 777 1 3 1 0 3 0 2 0 77777 8888888 3 555 1 1 22 2 1 1 0 0 11 99 33 3 8 0 7777777777777 1 99 9999 4 7777777777777777777777777777777777 3 1 1 6 777 00000 111 66 99 5 1 111 2 6 1 1111111 1 4
lowQualScore : . .. . ... . .. .. ..... . .. . . . ... . ...... . . . . .. . .. . . ... . . . ... .... . . ... . . . . . . . . ..... ....... . ... . . .. . . . . . .. .. .. . . . ............. . .. .... . .................................. . . . . ... ..... ... .. .. . . ... . . . ....... . .
lowQualScore : 3 66 0 777 3 99 66 55555 0 00 1 8 2 333 7 777777 8 3 4 3 66 3 66 2 0 444 7 0 0 555 2222 3 6 111 0 3 6 8 2 2 5 8 55555 4444444 1 777 0 0 00 0 0 0 2 4 11 22 66 6 0 3 1111111111111 0 11 1111 0 3333333333333333333333333333333333 8 4 0 0 000 00000 444 11 11 0 7 777 2 7 7 7777777 0 0
consensus : TAGGAGGTCTGTAAAATA-C--TCCTAANAGTATACGTTTGT-NNTTG-AT-GT--AATA--T-TCGACCCATATACATTCNAGNNGGTTGATTTCGAGGTCGTNTCTACGTTTGTAG------TGTAT-TGTNTCTTTA-ATG--AA-CANNATAACACCACCGTG---GCTATCTCCAACGCGATCTTTTCTTNCTGGTTTGTGAAANG-ANGGAA--GCATT-ATATCATCAGTTGA-G-AACAGNATCA-TCGAGCCAAGTTTCGGAAAAAGTNAGTATATCAAA----NCCATATAGTTCGG-----A-GT-AGATGATATCCAATTTGTGCTTNATACTCTGAACGTTGTAGTGNACNAACGACAAATTATTCGAAAAGTCTA--GAGCT--T-CG-AAATTA--C--GAT-GA--GATGAGGTAGATTGAGTACTA-CTGACAG-AGCTTG-TATCAGAT-GCAAGT--AG-C-CNACGGGGCCTGGGTTTGGGTGNACATCTCCTGA---TAA-----CAACAATATGACCGATAG--CCAAGTTAGGAAAGTGATCGCAAATA---TCATAG-ATGCAATG-------TATTTAGTCAAGNCTATATTTTCTGTGTATGTTTT
Reference ( family-940 ) : TAGGAGGTCTGTAAAATA-C--TCCTAANAGTATATGTTTGT-TNTTG-A--GT--AATA--T-TCGACCCATATGCATTCNAGNNGATTGATTTCGAGGTCGTTTCTACGTTTGTAG------TGTAT-TGTNTCTTTA-ATG--AA-CANNATAACACCACCGTG---GCTATCTCCAACGCGATCTTTTCTTNTTGGTTTGTGAAANG-ANGGAA--GCATT-ATATCATCAGTTGA-GCAACAGNATCA-TTGAGCCAAGTTTCGGAAAAAGTTAGTATATCAAA----NCCATATAGTTCGG-----A-GT-AGATGATATCNAATTTGTGNTNNATACTTTGAACGTTGTAGTGAACNAANGACAAATTATNCGAAAAGTCTA--GAGCT--T-CG-AAATTA--C--GAT-GA--GATGAGGNAGATTGAGTACTA-CTGACAG-AGCTTG-TATCAG-T-GCAAGT--AG-C-CNATGGGGCCTGGGTTTGGGTGNACATCTCCTGA---TAA-----CAACAATATGACCGATAG--CCAAGTTAGGAAAGTGATCGCAAATA---TCACAG-ATGCAATG-------TATTTAGTNAAGACTATATTTTCTGTGTATGTTTT
gi|19193 : TAGGAGGTCTGTAGAATA-A--TCCTAATAGTAAACGTTTGT-TATTG-A--GT--AATA--TATCGACCCATATACATTCAAGTGGGTTGATTTCAAGATCGTGTCTACGTTTGTAG------TGTAT-TGTGTCTTTA-ATG--AA-TAACATGACCCCTCCGTG---GTTGTCTCCAATGCGATCTTTTCTTTCTGGTTTGTTAAAAG-AAGGAA--GCATC-ATATCATCAGTTGA---AACAGAATCA-TCGAGCCATGTTTCAGTAAAAGTAAGTATATCAAA----ACCATATAATTCGG-----A-GT-AGATGATATCCAATTTGTGCTTTATACTCTGAACGTTGTAGTGTACTAACGACAAATTATTCGAAAAATCTA--GAGCT--T-CG-AAATTA--C--AAT-GA--GATGAGGTGGATTGAGTACTA-CTGACAG-AGCTTG-TATCAGAT-ATAAGT--AGTT-CAATGGGGCCTGGGTTTGGGTGTACATCTCCTGA---TAA-----CAACAATATGACCGATAG--CCAAGTTAGGAAAGTGATCGCAAATA---TCATAG-ATGCAATG-------CATTTAGTCAAGTCTATATTTTCTGTGTATGTTTT
gi|19194 : TAGGAGGTCTGTAGAATA-A--TCCTAATAGTAAACGTTTGT-TATTG-A--GT--AATA--TATCGACCCATATACATTCAAGTGGGTTGATTTCAAGATCGTATCTACGTTTGTAG------TGTAT-TGTGTCTTTA-ATG--AA-TAACATGACCCCTCCGTG---GTTGTCTCCAATGCGATATTTTCTTTCTGGTTTGTTAAAAG-AAGGAA--GCATC-ATATCATCAGTTGA---AACAGAATCA-TCGAGCCATGTTTCAGTAAAAGTAAGTATATCAAA----ACCATATAATTCGG-----A-GT-AGATGATATCCAATTTGTGCTTTATACTCTGAACGTTGTAGTGTACTAACGACAAATTATTCGAAAAATCTA--GAGCT--T-CG-AAATTA--C--AAT-GA--GATGAGGTGGATTGAGTACTA-CTGACAG-AGCTTG-TATCAGAT-GTAAGT--AGTT-CAATGGGGCCTGGGTTTGGGTGTGCATCTCCTGA---TAA-----CAACAATATGACCGATAA--CCAAGTTAGGAAAGTGATCGCAAATA---CCATAG-ATGCAATG-------CATTTAGTCAAGTCTATATTTTCTGTGTATGTTTT
gi|19195 : TAGGAGGTCTGTAGAATA-C--TCCTAATAGTCAACGTTTGT-TATTG-A--GT--AATA--TATCGACCCATATACATTCAAGTGGGTTGATTTCAAGATCGTGTCTACGTTTGTAG------TGTAT-TGTGTCTTTA-ATG--AA-TAGCATGACCCCTCCGTG---GTTATCTCCAATGCGATCTTTTCTTTCTGGTTTGTTAAAAG-AAGGAA--GCACC-ATATCATCAGTTGA---AACAGAATCA-TCGAGACATGTTTTAGTAAAAGTAAGTATATCAAA----ACCATATAGTTCGG-----A-GT-AGATGATATCCAATTTGTGCTTTATACTCT-AACGTTGTAGTGTAATAACGACAAATTATTCGAAAAATCTA--GAGTT--T-CG-AAATTA--C--AAT-GA--GATGAGGTGGATTGAGTACTA-CTGACAG-AGCTTG-TATCAGAC-GTAAGT--AG-TTCAATGGGGCCTGGGTTTGGGTGTACATCTCCTGA---TAA-----CAACAATATGACCGATAG--CCAAGTTAGGAAAGTGATCGCAAATA---TCATAG-ATACAATG-------TATTTAGTCAAGTCTATATTTTCTATGTATGTTTT
gi|19196 : TAGAAGGTCTGTAGAATA-C--TCCTAATAGTAAACGTTTGT-TATTG-A--GT--AATA--TATCGACCCATATACATTCAAGTGGGTTGATTTCAAGATCGTGTCTACGTTTGTAG------TGTAT-TGTGTCTTTA-ATG--AA-TAACATGAC-CCTCCGTG---GTTGTCTCCAATGCGATCTTTTCTTTCTGGTTTGTTAAAAG-AAGGAA--GCACC-ATATCATCAGTTGA---AACAAAATCA-TCGAGCCATGTTTCAGTAAAAGTAAGTATATCAAA----ACCATATAGTTCGG-----A-GT-AGATGATATCCAATTTGTGCTTTATACTCTGAACGTTGTAGTGTACTAATGACAAATTATTCGAAAAATTTA--GAGCT--T-CG-CAATTA--C--AAT-GA--GAGGAGGTAGAATGAGTACTA-CTGACAG-AGCTTG-TATCAGAT-GGAA-T--AGTT-CAATGGTGCCTGGGTTTGGGTGTACATCTCCTGA---TAA-----CAACAATATGACCGATAG--CCAATTTAGGAAAGTGATCGCAAATA---TCAAAA-ATGCAATG-------TATTTAGTTAAGATTACATTTCCTGTGTATGTTTT
gi|19197 : TAGGGGGTCAGTAATACA-G--TCCAAATAATATATGTTTAT-GTTTG-ATTAT--AAT---T-TCGATCAATATACATTTAATTGCATGGGGTTCAAGGTCCTTTCTACGTTTGTAA------TATACATAATTATTTACATA--AAGCAAC---ACACCACCATGACTGCTAT---CAACACGATCTTTTCTCTCGGGATTTTAAAAGGAATACAA----ATTAAGGTCATGAGATGA--------TATTGTTTG------GTTTCTGAAAAAGCCAGAATATTAAA----ATCACTTAGTTCGGT----ACGT-AG-T-ATATCAAGTTTGTTGTAAATGCTTTGGACATTGTAGTGAACGAATGACAAGTGTTTTGATAGGCCTATTGAATTACT-CGCAGAGTA--A--GA---A--AATGAGGAAG-TT--GTACTATTTGAC--------G-T---------CAAG----------ACTGGGCCGGGGTTAGGGTGCACATCTCCTGA---TAC-----TAACACTAGTACAAATAA--CCAAGCT
gi|19198 : GGAGGTCTGTAAAAAA-C--TCCTAAGAGTATATGTCTGT-GCTTA-ATAGT--AAT---T-TCAACCCATACGCATTCTAGACGATTGATTTCTAAGTCATTTCTGTGAGAAAAA------TGAAT-TGTCTCTTTA-ATA--TA-CATAATAACACCACCGT-------ATCCCCAATGCGATCTTTTCTTATTGGTTTATGGAATG-ATGGAA----ATT-CTAG-ATCAGCTGACGCAACAGTATCA-TTAAGCCAAGTTTCGGAGAATGTTAATATGTCAAA----CCCATACAGTTCAG-----A-GT-AGATTGTATCTAATTTGTATTTGATACTTTGAACATTATAATGCACAAGAGAAAGATTATGTGAAAAGTCGA--AGGCT--T-CC-AAACTA--CCTGATAGG--AACGAGGAAGA-TGAA----A-CTG--AG-A---TGTTATT---T-GCAATTG-AG-C-CTACATGACCTGGGTTTGGGTGAATATCTCC--A---CAAGTCAGCAACAGAATGA
gi|19199 : GGAGGTCTGTAGAAAA-C--TCCTAAGAGTATATGTCTGTACGTTATA--GT--AAT---T-TCAACCCATATGCATTCTAGACGATTGATTTCTAAGTCATTTCTACG-----AGAAAAATTGAAT-TGTCTTTTTA-ATA--TA-CATAATAACACCACCGTG---GATATCTCCAATGCGATCTGTTCTTATTGGTTTATGGAATG-CTGGAA----ATT-CTAT-ATCAGCTGACGCAACAGTATCA-TTAATCCAAGTTTCGGAGAATGTTTATATATCAAA----TCCATACAGTTCAG-----A-GT-AGATTGTATCTTATCTATATTTGATACTTTGAACATTATAACGAACAAGAGAAAGATTATATGAAAAGTCCA--AGGCT--T-CC-AAACTATCT--GATAGG--AACGAGGAAGA-TGAA----A-CTG--AG-A---TGTTATT---T-AC-AGTTGGG-C-CTATAGGACATGGGTTTGGGTGAATATATCC--A---CAAGTCAGCAATAACATGA---AGGG--CCATGTTAG--CAGTGAT
gi|19200 : GGAGGTCTGTAAAATA-C--TCCAATGAGAATATGTCTGT--GTTC-A--AT--AGTAAGT-TCAACCCATATGCATTCTAGACGATTGATTTCTAAGTCATTTCTACGAGAAAAA------TGAAT-TGTATCTTTA-ATG--TA-CATAATAATACCACCGCG---GCTATCTCCAACGCGATCTTTTCTTATTGGTTTATGGAACG-CTGGGA----ATT-CTA-GATCAGATGATGCAATAGTATCA-TTAAGCCAAGTTTCAGAGAAAGCTAATATATCAAA----TCCATATAGTTCAG-----A-GTAAAATG-TATCTAATTTATATCTAATACTTTGAACATTATAATGAACAAGAGAAAGACGATGTGAAAAGTCCA--AGGCT--T-TC-AAACTAT-C--TGT-AAAGGATGAGGTTGA-TGAA----A-CTG--AGTTGTTGG-TAACAGTT-G-------AG-C-CTATAGGACCTAGGTTTGGGTGAATATCTCCACA---AGA-----CAGCAGTAGAAT--ATAGGTCCATGTAAG--AAGTG-TTGTAAA-------ACAA-ACGGAACGTATGAAATATTTGGTAAAAAATATATTATCT
gi|19201 : GGAGGTCTGTAAAATA-C--TCCTAAGAGTATATGTGTGT-GTTTA-ATTGT--AAT---T-TCAACCCAAATGCATCCCAGATGATTGGTTTCTAGGTCATTTCTACGAGAAAAA------TGAAC-TACCTCTTTA-ATGTTAA-TA--ATAACACCACCGCG---GCTAACTCCAACGCGATCTTTTCTTATTGGTTTACGGAATG-CTGGAA----ATT-CTAG-ATCAGCTGACGCAACAGTATCA-TTAAGTCAAGTTACGGAGAATGTTAATAAATCAAA----CCCATATAGTTCAG-----A-GT-AAACTGTATCTAATTTACATTTGATACTTTGAACATTAAAATGAACAAAAGAAAGGTGATGTAAAAAGTCCA--AA-CTA-TGTG-AAAT--------AT-AT--GATGAGGTAGAT-GAA----A-CTGA--G-A------TGTCAG-TTGCAATT--GGGC-CTGTAGGACCTGGGTTTTGGTGAATATCTCCAGAAGTCAA-----CAATAAAATGA---ATAA--CCATGTTAGG--AGTG-TTGTAAACAAACTGACCGTATGAAA---------TATTTGGTAAAAATTATATTATCT
gi|19202 : GGGGGTCTGTAA--TA-CCGTCCAAATAATATATGTTTAT-GTTTG-ATTAT--AAT---T-TCGATCCATATACATTCAATTGCATGGGGTTCAAGGTCCTTTCTACGTTTGTAA------TGTA
gi|19203 : GGAGGTCGGTAAACTA-C--ACAAAGGAGTATATGTTTGT-TATTA-A--GTGAAATA----TCGATCCAGATACATTCTAAACAGTTTAATTCGAGATCTAGCCTGCGTTTGTA-------TGTAA-AGT-TCTT---ATA--TA-TACAATAACTCAACCATG---ACTACCACCATAACGGTATTTCCTTTTAGATTTTTGAAATG-ACAGAA--TAAGT-AGTTCTTCGGT--A-GGTATGGATTCA-TGTAACCAAGTTTCGGAGAATGTTAGGATGTCGAA----TTGATTAAGTTCTGCACTAA-GC-AG-----GTCTAGTTTATAGCGTAAACTTTGGACATTATAATGAATTAAAGATAAGTTAT
gi|19204 : AGGTCTGTAAAAAAAC--TCCTGAAAATATATGTCTGT-GCTTA-ATAGT--AAT---T-TCAACCCATACGCATTCTAGACGGTTGATTTCGAAGTATTTTCTACG-----AGAAAAACTA-AT-TGTATCTTTA-ATA--AA-CATAATAACACCACCGTG---ACTATCTTCAATGCGATCTTTTCTTATTGGTTTG
gi|19205 : GAGTTCGAGGTCAGGTCAAAGGATATAG------TGTAA-AG-------A-ATA--AG-C--TATAACACCTCCGTG---GCTGCCACCGATCCGGTCTTTACGTTCCGGTATG-GATAAG-TTGGAAAAGCA---ATGTCATCAGTCGG---AATAGATTCA-TTTAGCCAAGATTCTGAAAAAATTAAAACGTCAAA----GTGAAAAAGTTCTG-----T-TT-TCAACAAGTCTAGTTTGGGTAATATACTCTGGCTGCTGTAGTGAATGATTGATACATTATGAGAGAAATCGA--GAG
gi|19206 : ACCCTACCATG---GTTATCGCCAAAACGGT-TTTACGGATTGGTTTGTGAAAAC-CAGGGA--CAATT-ATGTCGTCAGTGGA-G--ATGGCGTTG-TTTAGCCAAGTTTCAGAAAAGGTCAGAACATCGGAGGACCCCA---AG-TCGGCT---G-CT-AG-TGA-GTCAACCTTATGATACAGGCTTTGTACATTGTAGTGAACTACCGA
gi|19207 : GCCAAGTTTCTGAAAAAGCCAGAATATCAAA----ATTACTTAGTTCGGT----ACGT-AGA--ATATCAAGTTTGTTGTAAATGCTTTGGACATTGTAGTGAACGAATGACAAGTGTTTTGACAGGTCTACTGAATTACT-CGCAGAGTA--A--GA---A--AATGAGGAAG-TTG-----TA-CTG---G-AATTTG-----AC-G-GCAAG----------ACTGGGCCAGGGTTAGGGTGCACATCTCCTGA---TAA-----TAACACTAATACAAATAA--CCAA
gi|19208 : TGATATCCAACTTGTGCTGTATACTCTGAACGTTGTAGTGTACTAATTACAAATAACTCGAGAAATCTA--GAGCT--T-
Alignments
lowQualScore : 333 222 111111 2222 333 1111111 11 11111 1111 333333333333333333333333333333333 22222 111 111 2222222
lowQualScore : 3 44 1 0 22 444 111 1 22 5 3 1 999 0 777777 2 3 5 3 44 3 77 4 1 555 3 1 1 555 4444 3 4 777 1 3 33 0 3 0 1 0 77777 8888888 3 555 2 2 1 11 1 1 4 0 0 11 99 33 3 8 0 55555 666666 4 1 99 9999 4 555555555555555555555555555555555 3 22 1 6 777 00000 111 66 99 5 1 111 0 6 1 1111111 1 1
lowQualScore : . .. . . .. ... ... . .. . . . ... . ...... . . . . .. . .. . . ... . . . ... .... . . ... . . .. . . . . . ..... ....... . ... . . . .. . . . . . .. .. .. . . . ..... ...... . . .. .... . ................................. . .. . . ... ..... ... .. .. . . ... . . . ....... . .
lowQualScore : 3 66 0 7 00 000 111 0 00 1 8 0 333 7 777777 8 3 4 3 66 3 66 2 0 444 7 0 0 555 2222 3 6 555 0 3 00 8 2 2 0 8 55555 4444444 1 777 2 9 1 11 0 0 6 2 4 22 22 66 6 0 3 55555 777777 0 4 11 1111 0 444444444444444444444444444444444 8 66 0 0 000 00000 444 11 11 0 7 777 3 7 7 7777777 0 0
consensus : TAGGAGGTCTGTAAAATA-C--TCCTAANAGTATACGTTTGTGNTTGA-T-GTAATAT-TCGACCCATATACATTCNAGNNGGTTGATTTCGAGGTCGTNTCTACGTTTGTAG------TGTAT-TGTNTCTTTA-ATG--AA-CANNATAACACCACCGTG---GCTATCTCCAACGCGATCTTTTCTTNCTGGTTTGTGAAANG-ANGGAA--GCATT-ATATCATCAGTTGA-G-AACAGNATCA-TCGAGCCAAGTTTCGGAAAAAGTNAGTATATCAAA----NCCATATAGTTCGG-----A-GT-AGATGATATCCAATTTGT-GCTTNATACTCTGAACGTTGTAGTGNACNAACGACAAATTATTCGAAAAGTCTA--GAGCT--T-CG-AAATTA-C--GAT-GA--GA-TGAGGTAGATTGAGTACTA-CTGACAG-AGCTTG-TAT-CAGAT-GCAAGT-AGTCCNACGGGGCCTGGGTTTGGGTGNACATCTCCTGA---TAA-----CAACAATATGACCGATAG--CCAAGTTAGGAAAGTGATCGCAAATA---TCATAG-ATGCAATG-------TATTTAGTCAAGNCTATATTTTCTGTGTATGTTTT
Reference ( family-940 ) : TAGGAGGTCTGTAAAATA-C--TCCTAANAGTATACGTTTGTNNTTGA-T-GTAATAT-TCGACCCATATACATTCNAGNNGGTTGATTTCGAGGTCGTNTCTACGTTTGTAG------TGTAT-TGTNTCTTTA-ATG--AA-CANNATAACACCACCGTG---GCTATCTCCAACGCGATCTTTTCTTNCTGGTTTGTGAAANG-ANGGAA--GCATT-ATATCATCAGTTGA-G-AACAGNATCA-TCGAGCCAAGTTTCGGAAAAAGTNAGTATATCAAA----NCCATATAGTTCGG-----A-GT-AGATGATATCCAATTTGT-GCTTNATACTCTGAACGTTGTAGTGNACNAACGACAAATTATTCGAAAAGTCTA--GAGCT--T-CG-AAATTA-C--GAT-GA--GA-TGAGGTAGATTGAGTACTA-CTGACAG-AGCTTG-TAT-CAGAT-GCAAGT-AG-CCNACGGGGCCTGGGTTTGGGTGNACATCTCCTGA---TAA-----CAACAATATGACCGATAG--CCAAGTTAGGAAAGTGATCGCAAATA---TCATAG-ATGCAATG-------TATTTAGTCAAGNCTATATTTTCTGTGTATGTTTT
gi|19193 : TAGGAGGTCTGTAGAATA-A--TCCTAATAGTAAACGTTTGTTATTGA---GTAATATATCGACCCATATACATTCAAGTGGGTTGATTTCAAGATCGTGTCTACGTTTGTAG------TGTAT-TGTGTCTTTA-ATG--AA-TAACATGACCCCTCCGTG---GTTGTCTCCAATGCGATCTTTTCTTTCTGGTTTGTTAAAAG-AAGGAA--GCATC-ATATCATCAGTTGA---AACAGAATCA-TCGAGCCATGTTTCAGTAAAAGTAAGTATATCAAA----ACCATATAATTCGG-----A-GT-AGATGATATCCAATTTGT-GCTTTATACTCTGAACGTTGTAGTGTACTAACGACAAATTATTCGAAAAATCTA--GAGCT--T-CG-AAATTA-C--AAT-GA--GA-TGAGGTGGATTGAGTACTA-CTGACAG-AGCTTG-TAT-CAGAT-ATAAGT-AGTTCAATGGGGCCTGGGTTTGGGTGTACATCTCCTGA---TAA-----CAACAATATGACCGATAG--CCAAGTTAGGAAAGTGATCGCAAATA---TCATAG-ATGCAATG-------CATTTAGTCAAGTCTATATTTTCTGTGTATGTTTT
gi|19194 : TAGGAGGTCTGTAGAATA-A--TCCTAATAGTAAACGTTTGTTATTGA---GTAATATATCGACCCATATACATTCAAGTGGGTTGATTTCAAGATCGTATCTACGTTTGTAG------TGTAT-TGTGTCTTTA-ATG--AA-TAACATGACCCCTCCGTG---GTTGTCTCCAATGCGATATTTTCTTTCTGGTTTGTTAAAAG-AAGGAA--GCATC-ATATCATCAGTTGA---AACAGAATCA-TCGAGCCATGTTTCAGTAAAAGTAAGTATATCAAA----ACCATATAATTCGG-----A-GT-AGATGATATCCAATTTGT-GCTTTATACTCTGAACGTTGTAGTGTACTAACGACAAATTATTCGAAAAATCTA--GAGCT--T-CG-AAATTA-C--AAT-GA--GA-TGAGGTGGATTGAGTACTA-CTGACAG-AGCTTG-TAT-CAGAT-GTAAGT-AGTTCAATGGGGCCTGGGTTTGGGTGTGCATCTCCTGA---TAA-----CAACAATATGACCGATAA--CCAAGTTAGGAAAGTGATCGCAAATA---CCATAG-ATGCAATG-------CATTTAGTCAAGTCTATATTTTCTGTGTATGTTTT
gi|19195 : TAGGAGGTCTGTAGAATA-C--TCCTAATAGTCAACGTTTGTTATTGA---GTAATATATCGACCCATATACATTCAAGTGGGTTGATTTCAAGATCGTGTCTACGTTTGTAG------TGTAT-TGTGTCTTTA-ATG--AA-TAGCATGACCCCTCCGTG---GTTATCTCCAATGCGATCTTTTCTTTCTGGTTTGTTAAAAG-AAGGAA--GCACC-ATATCATCAGTTGA---AACAGAATCA-TCGAGACATGTTTTAGTAAAAGTAAGTATATCAAA----ACCATATAGTTCGG-----A-GT-AGATGATATCCAATTTGT-GCTTTATACTCT-AACGTTGTAGTGTAATAACGACAAATTATTCGAAAAATCTA--GAGTT--T-CG-AAATTA-C--AAT-GA--GA-TGAGGTGGATTGAGTACTA-CTGACAG-AGCTTG-TAT-CAGAC-GTAAGT-AGTTCAATGGGGCCTGGGTTTGGGTGTACATCTCCTGA---TAA-----CAACAATATGACCGATAG--CCAAGTTAGGAAAGTGATCGCAAATA---TCATAG-ATACAATG-------TATTTAGTCAAGTCTATATTTTCTATGTATGTTTT
gi|19196 : TAGAAGGTCTGTAGAATA-C--TCCTAATAGTAAACGTTTGTTATTGA---GTAATATATCGACCCATATACATTCAAGTGGGTTGATTTCAAGATCGTGTCTACGTTTGTAG------TGTAT-TGTGTCTTTA-ATG--AA-TAACATGAC-CCTCCGTG---GTTGTCTCCAATGCGATCTTTTCTTTCTGGTTTGTTAAAAG-AAGGAA--GCACC-ATATCATCAGTTGA---AACAAAATCA-TCGAGCCATGTTTCAGTAAAAGTAAGTATATCAAA----ACCATATAGTTCGG-----A-GT-AGATGATATCCAATTTGT-GCTTTATACTCTGAACGTTGTAGTGTACTAATGACAAATTATTCGAAAAATTTA--GAGCT--T-CG-CAATTA-C--AAT-GA--GA-GGAGGTAGAATGAGTACTA-CTGACAG-AGCTTG-TAT-CAGAT-GGAA-T-AGTTCAATGGTGCCTGGGTTTGGGTGTACATCTCCTGA---TAA-----CAACAATATGACCGATAG--CCAATTTAGGAAAGTGATCGCAAATA---TCAAAA-ATGCAATG-------TATTTAGTTAAGATTACATTTCCTGTGTATGTTTT
gi|19197 : TAGGGGGTCAGTAATACA-G--TCCAAATAATATATGTTTATGTTTGA-TTATAAT-T-TCGATCAATATACATTTAATTGCATGGGGTTCAAGGTCCTTTCTACGTTTGTAA------TATACATAATTATTTACATA--AAGCAAC---ACACCACCATGACTGCTAT---CAACACGATCTTTTCTCTCGGGATTTTAAAAGGAATACAA----ATTAAGGTCATGAGATGA--------TATTGTTTG------GTTTCTGAAAAAGCCAGAATATTAAA----ATCACTTAGTTCGGT----ACGT-AG-T-ATATCAAGTTTGT-TGTAAATGCTTTGGACATTGTAGTGAACGAATGACAAGTGTTTTGATAGGCCTATTGAATTACT-CGCAGAGTA-A--GA---A--AA-TGAGGAAG-TT--GTACTATTTGAC--------G-T----------CAAG--------ACTGGGCCGGGGTTAGGGTGCACATCTCCTGA---TAC-----TAACACTAGTACAAATAA--CCAAGCT
gi|19198 : GGAGGTCTGTAAAAAA-C--TCCTAAGAGTATATGTCTGTGCTTAA-TAGTAAT-T-TCAACCCATACGCATTCTAGACGATTGATTTCTAAGTCATTTCTGTGAGAAAAA------TGAAT-TGTCTCTTTA-ATA--TA-CATAATAACACCACCGT-------ATCCCCAATGCGATCTTTTCTTATTGGTTTATGGAATG-ATGGAA----ATT-CTAG-ATCAGCTGACGCAACAGTATCA-TTAAGCCAAGTTTCGGAGAATGTTAATATGTCAAA----CCCATACAGTTCAG-----A-GT-AGATTGTATCTAATTTGT-ATTTGATACTTTGAACATTATAATGCACAAGAGAAAGATTATGTGAAAAGTCGA--AGGCT--T-CC-AAACTA-CCTGATAGG--AA-CGAGGAAGA-TGAA----A-CTG--AG-A---TGTTAT-T---T-GCAATTGAG-CCTACATGACCTGGGTTTGGGTGAATATCTCC--A---CAAGTCAGCAACAGAATGA
gi|19199 : GGAGGTCTGTAGAAAA-C--TCCTAAGAGTATATGTCTGTACGTTA-TAGTAAT-T-TCAACCCATATGCATTCTAGACGATTGATTTCTAAGTCATTTCTACG-----AGAAAAATTGAAT-TGTCTTTTTA-ATA--TA-CATAATAACACCACCGTG---GATATCTCCAATGCGATCTGTTCTTATTGGTTTATGGAATG-CTGGAA----ATT-CTAT-ATCAGCTGACGCAACAGTATCA-TTAATCCAAGTTTCGGAGAATGTTTATATATCAAA----TCCATACAGTTCAG-----A-GT-AGATTGTATCTTATCTAT-ATTTGATACTTTGAACATTATAACGAACAAGAGAAAGATTATATGAAAAGTCCA--AGGCT--T-CC-AAACTA-TCTGAT-AG--GAACGAGGAAGAT-GAA----A-CTGA--G-ATGTTA-TTTACAGTT-G------GG-CCTATAGGACATGGGTTTGGGTGAATATATCC--A---CAAGTCAGCAATAACATGA---AGGG--CCATGTTAG--CAGTGAT
gi|19200 : GGAGGTCTGTAAAATA-C--TCCAATGAGAATATGTCTGTGTTCAA-TAGTAA-GT-TCAACCCATATGCATTCTAGACGATTGATTTCTAAGTCATTTCTACGAGAAAAA------TGAAT-TGTATCTTTA-ATG--TA-CATAATAATACCACCGCG---GCTATCTCCAACGCGATCTTTTCTTATTGGTTTATGGAACG-CTGGGA----ATT-CTA-GATCAGATGATGCAATAGTATCA-TTAAGCCAAGTTTCAGAGAAAGCTAATATATCAAA----TCCATATAGTTCAG-----A-GTAAAATG-TATCTAATTTAT-ATCTAATACTTTGAACATTATAATGAACAAGAGAAAGACGATGTGAAAAGTCCA--AGGCT--T-TC-AAACTATC--TGT-AAAGGA-TGAGGTTGA-TGAA----A-CTG--AGTTGTTGG-TAA-CAGTT-G------AG-CCTATAGGACCTAGGTTTGGGTGAATATCTCCACA---AGA-----CAGCAGTAGAAT--ATAGGTCCATGTAAG--AAGTG-TTGTAAA-------ACAA-ACGGAACGTATGAAATATTTGGTAAAAAATATATTATCT
gi|19201 : GGAGGTCTGTAAAATA-C--TCCTAAGAGTATATGTGTGTGTTTAA-TTGTAAT-T-TCAACCCAAATGCATCCCAGATGATTGGTTTCTAGGTCATTTCTACGAGAAAAA------TGAAC-TACCTCTTTA-ATGTTAA-TA--ATAACACCACCGCG---GCTAACTCCAACGCGATCTTTTCTTATTGGTTTACGGAATG-CTGGAA----ATT-CTAG-ATCAGCTGACGCAACAGTATCA-TTAAGTCAAGTTACGGAGAATGTTAATAAATCAAA----CCCATATAGTTCAG-----A-GT-AAACTGTATCTAATTTAC-ATTTGATACTTTGAACATTAAAATGAACAAAAGAAAGGTGATGTAAAAAGTCCA---AACTA-TGTG-AAAT-------AT-AT--GA-TGAGGTAGA-TGAA----A-CTG--AG-A------TGT-CAGTT-GCAATTGGG-CCTGTAGGACCTGGGTTTTGGTGAATATCTCCAGAAGTCAA-----CAATAAAATGA---ATAA--CCATGTTAGG--AGTG-TTGTAAACAAACTGACCGTATGAAA---------TATTTGGTAAAAATTATATTATCT
gi|19202 : GGGGGTCTGTAA--TA-CCGTCCAAATAATATATGTTTATGTTTGA-TTATAAT-T-TCGATCCATATACATTCAATTGCATGGGGTTCAAGGTCCTTTCTACGTTTGTAA------TGTA
gi|19203 : GGAGGTCGGTAAACTA-C--ACAAAGGAGTATATGTTTGTTATTAAGT-GAAATAT--CGATCCAGATACATTCTAAACAGTTTAATTCGAGATCTAGCCTGCGTTTGTA-------TGTAA-AGT-TCTT---ATA--TA-TACAATAACTCAACCATG---ACTACCACCATAACGGTATTTCCTTTTAGATTTTTGAAATG-ACAGAA--TAAGT-AGTTCTTCGGTAG--G-TATGGATTCA-TGTAACCAAGTTTCGGAGAATGTTAGGATGTCGAA----TTGATTAAGTTCTGCACTAA-GC-AG-----GTCTAGTTTATAGCGTAA-ACTTTGGACATTATAATGAATTAAAGATAAGTTAT
gi|19204 : AGGTCTGTAAAAAAAC--TCCTGAAAATATATGTCTGTGCTTAA-TAGTAAT-T-TCAACCCATACGCATTCTAGACGGTTGATTTCGAAGTATTTTCTACG-----AGAAAAACTA-AT-TGTATCTTTA-ATA--AA-CATAATAACACCACCGTG---ACTATCTTCAATGCGATCTTTTCTTATTGGTTTG
gi|19205 : GAGTTCGAGGTCAGGTCAAAGGATATAG------TGTAA-AG-------A-ATA--AG-C--TATAACACCTCCGTG---GCTGCCACCGATCCGGTCTTTACGTTCCGGTATG-GATAAG-TTGGAAAAGCA---ATGTCATCAGTCG--G-AATAGATTCA-TTTAGCCAAGATTCTGAAAAAATTAAAACGTCAAA----GTGAAAAAGTTCTG-----T-TT-TCAACAAGTCTAGTTTGG-GTAATATACTCTGGCTGCTGTAGTGAATGATTGATACATTATGAGAGAAATCGA--GAG
gi|19206 : ACCCTACCATG---GTTATCGCCAAAACGGT-TTTACGGATTGGTTTGTGAAAAC-CAGGGA--CAATT-ATGTCGTCAGTGGA-G-A-TGGCGTTG-TTTAGCCAAGTTTCAGAAAAGGTCAGAACATCGGAGGACCCCA---AG-TCGGCT---G-CT-AG-TGA-GTCAACCTTAT-GATACAGGCTTTGTACATTGTAGTGAACTACCGA
gi|19207 : GCCAAGTTTCTGAAAAAGCCAGAATATCAAA----ATTACTTAGTTCGGT----ACGT-AGA--ATATCAAGTTTGT-TGTAAATGCTTTGGACATTGTAGTGAACGAATGACAAGTGTTTTGACAGGTCTACTGAATTACT-CGCAGAGTA-A--GA---A--AA-TGAGGAAG-TTG-----TA-CTG---G-AATTT--------GACGGCAAG--------ACTGGGCCAGGGTTAGGGTGCACATCTCCTGA---TAA-----TAACACTAATACAAATAA--CCAA
gi|19208 : TGATATCCAACTTGT-GCTGTATACTCTGAACGTTGTAGTGTACTAATTACAAATAACTCGAGAAATCTA--GAGCT--T-
Alignments
lowQualScore : 333 222 111111 2222 333 1111111 11 11111 1111 22222222222222222222222222222222 22222 111 111 2222222
lowQualScore : 3 44 1 0 22 444 111 1 22 5 3 1 999 0 777777 2 3 5 3 44 3 77 4 1 555 3 1 1 555 4444 3 6 777 1 3 33 0 3 0 1 0 77777 8888888 8888 2 2 1 11 1 1 4 0 0 11 99 33 3 8 0 55555 666666 4 1 555 9999 4 22222222222222222222222222222222 3 22 1 6 777 00000 111 66 99 5 1 111 0 6 1 1111111 1 1
lowQualScore : . .. . . .. ... ... . .. . . . ... . ...... . . . . .. . .. . . ... . . . ... .... . . ... . . .. . . . . . ..... ....... .... . . . .. . . . . . .. .. .. . . . ..... ...... . . ... .... . ................................ . .. . . ... ..... ... .. .. . . ... . . . ....... . .
lowQualScore : 3 66 0 7 88 000 111 0 00 1 8 0 333 7 777777 8 3 4 3 66 3 66 2 0 444 7 0 0 555 2222 3 7 555 0 3 00 8 2 2 0 8 55555 4444444 6666 2 9 1 11 0 0 6 2 4 22 22 66 6 0 3 55555 777777 0 4 000 1111 0 88888888888888888888888888888888 8 66 0 0 000 00000 444 11 11 0 7 777 3 7 7 7777777 0 0
consensus : TAGGAGGTCTGTAAAATA-C--TCCTAANAGTATACGTTTGTGNTTGA-T-GTAATAT-TCGACCCATATACATTCNAGNNGGTTGATTTCGAGGTCGTNTCTACGTTTGTAG------TGTAT-TGTNTCTTTA-ATG--AA-CANNATAACACCACCGTG---GCTATCTCCAACGCGATCTTTTCTTNCTGGTTTGTGAAANG-ANGGAA--GCATT-ATATCATCAGTTGA-G-AACAGNATCA-TCGAGCCAAGTTTCGGAAAAAGTNAGTATATCAAA----NCCATATAGTTCGG-----A-GTAGA-TGATATCCAATTTGT-GCTTNATACTCTGAACGTTGTAGTGNACNAACGACAAATTATTCGAAAAGTCTA--GAGCT--T-CG-AAATTA-C--GAT-GA--GA-TGAGGTAGATTGAGTACTA-CTGACAGA-GCTTG-T-ATCAGAT-GCAAGTAGTCCNACGGGGCCTGGGTTTGGGTGNACATCTCCTGA---TAA-----CAACAATATGACCGATAG--CCAAGTTAGGAAAGTGATCGCAAATA---TCATAG-ATGCAATG-------TATTTAGTCAAGNCTATATTTTCTGTGTATGTTTT
Reference ( family-940 ) : TAGGAGGTCTGTAAAATA-C--TCCTAANAGTATACGTTTGTGNTTGA-T-GTAATAT-TCGACCCATATACATTCNAGNNGGTTGATTTCGAGGTCGTNTCTACGTTTGTAG------TGTAT-TGTNTCTTTA-ATG--AA-CANNATAACACCACCGTG---GCTATCTCCAACGCGATCTTTTCTTNCTGGTTTGTGAAANG-ANGGAA--GCATT-ATATCATCAGTTGA-G-AACAGNATCA-TCGAGCCAAGTTTCGGAAAAAGTNAGTATATCAAA----NCCATATAGTTCGG-----A-GTAGA-TGATATCCAATTTGT-GCTTNATACTCTGAACGTTGTAGTGNACNAACGACAAATTATTCGAAAAGTCTA--GAGCT--T-CG-AAATTA-C--GAT-GA--GA-TGAGGTAGATTGAGTACTA-CTGACAGA-GCTTG-T-ATCAGAT-GCAAGTAGTCCNACGGGGCCTGGGTTTGGGTGNACATCTCCTGA---TAA-----CAACAATATGACCGATAG--CCAAGTTAGGAAAGTGATCGCAAATA---TCATAG-ATGCAATG-------TATTTAGTCAAGNCTATATTTTCTGTGTATGTTTT
gi|19193 : TAGGAGGTCTGTAGAATA-A--TCCTAATAGTAAACGTTTGTTATTGA---GTAATATATCGACCCATATACATTCAAGTGGGTTGATTTCAAGATCGTGTCTACGTTTGTAG------TGTAT-TGTGTCTTTA-ATG--AA-TAACATGACCCCTCCGTG---GTTGTCTCCAATGCGATCTTTTCTTTCTGGTTTGTTAAAAG-AAGGAA--GCATC-ATATCATCAGTTGA---AACAGAATCA-TCGAGCCATGTTTCAGTAAAAGTAAGTATATCAAA----ACCATATAATTCGG-----A-GTAGA-TGATATCCAATTTGT-GCTTTATACTCTGAACGTTGTAGTGTACTAACGACAAATTATTCGAAAAATCTA--GAGCT--T-CG-AAATTA-C--AAT-GA--GA-TGAGGTGGATTGAGTACTA-CTGACAGA-GCTTG-T-ATCAGAT-ATAAGTAGTTCAATGGGGCCTGGGTTTGGGTGTACATCTCCTGA---TAA-----CAACAATATGACCGATAG--CCAAGTTAGGAAAGTGATCGCAAATA---TCATAG-ATGCAATG-------CATTTAGTCAAGTCTATATTTTCTGTGTATGTTTT
gi|19194 : TAGGAGGTCTGTAGAATA-A--TCCTAATAGTAAACGTTTGTTATTGA---GTAATATATCGACCCATATACATTCAAGTGGGTTGATTTCAAGATCGTATCTACGTTTGTAG------TGTAT-TGTGTCTTTA-ATG--AA-TAACATGACCCCTCCGTG---GTTGTCTCCAATGCGATATTTTCTTTCTGGTTTGTTAAAAG-AAGGAA--GCATC-ATATCATCAGTTGA---AACAGAATCA-TCGAGCCATGTTTCAGTAAAAGTAAGTATATCAAA----ACCATATAATTCGG-----A-GTAGA-TGATATCCAATTTGT-GCTTTATACTCTGAACGTTGTAGTGTACTAACGACAAATTATTCGAAAAATCTA--GAGCT--T-CG-AAATTA-C--AAT-GA--GA-TGAGGTGGATTGAGTACTA-CTGACAGA-GCTTG-T-ATCAGAT-GTAAGTAGTTCAATGGGGCCTGGGTTTGGGTGTGCATCTCCTGA---TAA-----CAACAATATGACCGATAA--CCAAGTTAGGAAAGTGATCGCAAATA---CCATAG-ATGCAATG-------CATTTAGTCAAGTCTATATTTTCTGTGTATGTTTT
gi|19195 : TAGGAGGTCTGTAGAATA-C--TCCTAATAGTCAACGTTTGTTATTGA---GTAATATATCGACCCATATACATTCAAGTGGGTTGATTTCAAGATCGTGTCTACGTTTGTAG------TGTAT-TGTGTCTTTA-ATG--AA-TAGCATGACCCCTCCGTG---GTTATCTCCAATGCGATCTTTTCTTTCTGGTTTGTTAAAAG-AAGGAA--GCACC-ATATCATCAGTTGA---AACAGAATCA-TCGAGACATGTTTTAGTAAAAGTAAGTATATCAAA----ACCATATAGTTCGG-----A-GTAGA-TGATATCCAATTTGT-GCTTTATACTCT-AACGTTGTAGTGTAATAACGACAAATTATTCGAAAAATCTA--GAGTT--T-CG-AAATTA-C--AAT-GA--GA-TGAGGTGGATTGAGTACTA-CTGACAGA-GCTTG-T-ATCAGAC-GTAAGTAGTTCAATGGGGCCTGGGTTTGGGTGTACATCTCCTGA---TAA-----CAACAATATGACCGATAG--CCAAGTTAGGAAAGTGATCGCAAATA---TCATAG-ATACAATG-------TATTTAGTCAAGTCTATATTTTCTATGTATGTTTT
gi|19196 : TAGAAGGTCTGTAGAATA-C--TCCTAATAGTAAACGTTTGTTATTGA---GTAATATATCGACCCATATACATTCAAGTGGGTTGATTTCAAGATCGTGTCTACGTTTGTAG------TGTAT-TGTGTCTTTA-ATG--AA-TAACATGAC-CCTCCGTG---GTTGTCTCCAATGCGATCTTTTCTTTCTGGTTTGTTAAAAG-AAGGAA--GCACC-ATATCATCAGTTGA---AACAAAATCA-TCGAGCCATGTTTCAGTAAAAGTAAGTATATCAAA----ACCATATAGTTCGG-----A-GTAGA-TGATATCCAATTTGT-GCTTTATACTCTGAACGTTGTAGTGTACTAATGACAAATTATTCGAAAAATTTA--GAGCT--T-CG-CAATTA-C--AAT-GA--GA-GGAGGTAGAATGAGTACTA-CTGACAGA-GCTTG-T-ATCAGAT-GGAA-TAGTTCAATGGTGCCTGGGTTTGGGTGTACATCTCCTGA---TAA-----CAACAATATGACCGATAG--CCAATTTAGGAAAGTGATCGCAAATA---TCAAAA-ATGCAATG-------TATTTAGTTAAGATTACATTTCCTGTGTATGTTTT
gi|19197 : TAGGGGGTCAGTAATACA-G--TCCAAATAATATATGTTTATGTTTGA-TTATAAT-T-TCGATCAATATACATTTAATTGCATGGGGTTCAAGGTCCTTTCTACGTTTGTAA------TATACATAATTATTTACATA--AAGCAAC---ACACCACCATGACTGCTAT---CAACACGATCTTTTCTCTCGGGATTTTAAAAGGAATACAA----ATTAAGGTCATGAGATGA--------TATTGTTTG------GTTTCTGAAAAAGCCAGAATATTAAA----ATCACTTAGTTCGGT----ACGTAG--T-ATATCAAGTTTGT-TGTAAATGCTTTGGACATTGTAGTGAACGAATGACAAGTGTTTTGATAGGCCTATTGAATTACT-CGCAGAGTA-A--GA---A--AA-TGAGGAAG-TT--GTACTATTTGAC--------G-T----------CAAG-------ACTGGGCCGGGGTTAGGGTGCACATCTCCTGA---TAC-----TAACACTAGTACAAATAA--CCAAGCT
gi|19198 : GGAGGTCTGTAAAAAA-C--TCCTAAGAGTATATGTCTGTGCTTAA-TAGTAAT-T-TCAACCCATACGCATTCTAGACGATTGATTTCTAAGTCATTTCTGTGAGAAAAA------TGAAT-TGTCTCTTTA-ATA--TA-CATAATAACACCACCGT-------ATCCCCAATGCGATCTTTTCTTATTGGTTTATGGAATG-ATGGAA----ATT-CTAG-ATCAGCTGACGCAACAGTATCA-TTAAGCCAAGTTTCGGAGAATGTTAATATGTCAAA----CCCATACAGTTCAG-----A-GTAGA-TTGTATCTAATTTGT-ATTTGATACTTTGAACATTATAATGCACAAGAGAAAGATTATGTGAAAAGTCGA--AGGCT--T-CC-AAACTA-CCTGATAGG--AA-CGAGGAAGA-TGAA----A-CTG--AGA----TGTT-ATT---T-GCAATTGAGCCTACATGACCTGGGTTTGGGTGAATATCTCC--A---CAAGTCAGCAACAGAATGA
gi|19199 : GGAGGTCTGTAGAAAA-C--TCCTAAGAGTATATGTCTGTACGTTA-TAGTAAT-T-TCAACCCATATGCATTCTAGACGATTGATTTCTAAGTCATTTCTACG-----AGAAAAATTGAAT-TGTCTTTTTA-ATA--TA-CATAATAACACCACCGTG---GATATCTCCAATGCGATCTGTTCTTATTGGTTTATGGAATG-CTGGAA----ATT-CTAT-ATCAGCTGACGCAACAGTATCA-TTAATCCAAGTTTCGGAGAATGTTTATATATCAAA----TCCATACAGTTCAG-----A-GTAGA-TTGTATCTTATCTAT-ATTTGATACTTTGAACATTATAACGAACAAGAGAAAGATTATATGAAAAGTCCA--AGGCT--T-CC-AAACTA-TCTGAT-AG--GAACGAGGAAGAT-GAA----A-CTGA--GA----TG-TTATT---T-ACAGTTGGGCCTATAGGACATGGGTTTGGGTGAATATATCC--A---CAAGTCAGCAATAACATGA---AGGG--CCATGTTAG--CAGTGAT
gi|19200 : GGAGGTCTGTAAAATA-C--TCCAATGAGAATATGTCTGTGTTCAA-TAGTAA-GT-TCAACCCATATGCATTCTAGACGATTGATTTCTAAGTCATTTCTACGAGAAAAA------TGAAT-TGTATCTTTA-ATG--TA-CATAATAATACCACCGCG---GCTATCTCCAACGCGATCTTTTCTTATTGGTTTATGGAACG-CTGGGA----ATT-CTAG-ATCAGATGATGCAATAGTATCA-TTAAGCCAAGTTTCAGAGAAAGCTAATATATCAAA----TCCATATAGTTCAG-----A-GTAAAATG-TATCTAATTTAT-ATCTAATACTTTGAACATTATAATGAACAAGAGAAAGACGATGTGAAAAGTCCA--AGGCT--T-TC-AAACTATC--TGT-AAAGGA-TGAGGTTGAT-GAA----A-CTGA--GTTGTTGG-T-AACAGTT-G-----AG-CCTATAGGACCTAGGTTTGGGTGAATATCTCCACA---AGA-----CAGCAGTAGAAT--ATAGGTCCATGTAAG--AAGTG-TTGTAAA-------ACAA-ACGGAACGTATGAAATATTTGGTAAAAAATATATTATCT
gi|19201 : GGAGGTCTGTAAAATA-C--TCCTAAGAGTATATGTGTGTGTTTAA-TTGTAAT-T-TCAACCCAAATGCATCCCAGATGATTGGTTTCTAGGTCATTTCTACGAGAAAAA------TGAAC-TACCTCTTTA-ATGTTAA-TA--ATAACACCACCGCG---GCTAACTCCAACGCGATCTTTTCTTATTGGTTTACGGAATG-CTGGAA----ATT-CTAG-ATCAGCTGACGCAACAGTATCA-TTAAGTCAAGTTACGGAGAATGTTAATAAATCAAA----CCCATATAGTTCAG-----A-GTAAA-CTGTATCTAATTTAC-ATTTGATACTTTGAACATTAAAATGAACAAAAGAAAGGTGATGTAAAAAGTCCA---AACTA-TGTG-AAAT-------AT-AT--GA-TGAGGTAGA-TGAA----A-CTG--AGA-------T-GTCAGTT-GCAATTGGGCCTGTAGGACCTGGGTTTTGGTGAATATCTCCAGAAGTCAA-----CAATAAAATGA---ATAA--CCATGTTAGG--AGTG-TTGTAAACAAACTGACCGTATGAAA---------TATTTGGTAAAAATTATATTATCT
gi|19202 : GGGGGTCTGTAA--TA-CCGTCCAAATAATATATGTTTATGTTTGA-TTATAAT-T-TCGATCCATATACATTCAATTGCATGGGGTTCAAGGTCCTTTCTACGTTTGTAA------TGTA
gi|19203 : GGAGGTCGGTAAACTA-C--ACAAAGGAGTATATGTTTGTTATTAAGT-GAAATAT--CGATCCAGATACATTCTAAACAGTTTAATTCGAGATCTAGCCTGCGTTTGTA-------TGTAA-AGT-TCTT---ATA--TA-TACAATAACTCAACCATG---ACTACCACCATAACGGTATTTCCTTTTAGATTTTTGAAATG-ACAGAA--TAAGT-AGTTCTTCGGTAG--G-TATGGATTCA-TGTAACCAAGTTTCGGAGAATGTTAGGATGTCGAA----TTGATTAAGTTCTGCACTAA-GCAG------GTCTAGTTTATAGCGTAA-ACTTTGGACATTATAATGAATTAAAGATAAGTTAT
gi|19204 : AGGTCTGTAAAAAAAC--TCCTGAAAATATATGTCTGTGCTTAA-TAGTAAT-T-TCAACCCATACGCATTCTAGACGGTTGATTTCGAAGTATTTTCTACG-----AGAAAAACTA-AT-TGTATCTTTA-ATA--AA-CATAATAACACCACCGTG---ACTATCTTCAATGCGATCTTTTCTTATTGGTTTG
gi|19205 : GAGTTCGAGGTCAGGTCAAAGGATATAG------TGTAA-AG-------A-ATA--AG-C--TATAACACCTCCGTG---GCTGCCACCGATCCGGTCTTTACGTTCCGGTATG-GATAAG-TTGGAAAAGCA---ATGTCATCAGTCG--G-AATAGATTCA-TTTAGCCAAGATTCTGAAAAAATTAAAACGTCAAA----GTGAAAAAGTTCTG-----T-TTTCA-ACAAGTCTAGTTTGG-GTAATATACTCTGGCTGCTGTAGTGAATGATTGATACATTATGAGAGAAATCGA--GAG
gi|19206 : ACCCTACCATG---GTTATCGCCAAAACGGT-TTTACGGATTGGTTTGTGAAAAC-CAGGGA--CAATT-ATGTCGTCAGTGGA-G--ATGGCGTTG-TTTAGCCAAGTTTCAGAAAAGGTCAGAACATCGGAGGACCCCA---AG-TCGGCT---G-CTAG--TGA-GTCAACCTTAT-GATACAGGCTTTGTACATTGTAGTGAACTACCGA
gi|19207 : GCCAAGTTTCTGAAAAAGCCAGAATATCAAA----ATTACTTAGTTCGGT----ACGTAGA---ATATCAAGTTTGT-TGTAAATGCTTTGGACATTGTAGTGAACGAATGACAAGTGTTTTGACAGGTCTACTGAATTACT-CGCAGAGTA-A--GA---A--AA-TGAGGAAG-TTG-----TA-CTG---GA-ATTT--------GACGGCAAG-------ACTGGGCCAGGGTTAGGGTGCACATCTCCTGA---TAA-----TAACACTAATACAAATAA--CCAA
gi|19208 : -TGATATCCAACTTGT-GCTGTATACTCTGAACGTTGTAGTGTACTAATTACAAATAACTCGAGAAATCTA--GAGCT--T-
Alignments
lowQualScore : 333 222 111111 2222 333 1111111 11 11111 1111 22222222222222222222222222222222 22222 111 111 2222222
lowQualScore : 3 44 1 0 22 444 111 1 22 5 3 1 999 0 777777 2 3 5 3 44 3 77 4 1 555 3 1 1 555 4444 3 6 777 1 3 33 0 3 0 1 0 77777 8888888 8888 2 2 1 11 1 1 4 0 0 11 99 33 3 8 0 55555 666666 4 1 555 9999 4 22222222222222222222222222222222 3 22 1 6 777 00000 111 66 99 5 1 111 0 6 1 1111111 1 1
lowQualScore : . .. . . .. ... ... . .. . . . ... . ...... . . . . .. . .. . . ... . . . ... .... . . ... . . .. . . . . . ..... ....... .... . . . .. . . . . . .. .. .. . . . ..... ...... . . ... .... . ................................ . .. . . ... ..... ... .. .. . . ... . . . ....... . .
lowQualScore : 3 66 0 7 88 000 111 0 00 1 8 0 333 7 777777 8 3 4 3 66 3 66 2 0 444 7 0 0 555 2222 3 7 555 0 3 00 8 2 2 0 8 55555 4444444 6666 2 9 1 11 0 0 6 2 4 22 22 66 6 0 3 55555 777777 0 4 000 1111 0 88888888888888888888888888888888 8 66 0 0 000 00000 444 11 11 0 7 777 3 7 7 7777777 0 0
consensus : TAGGAGGTCTGTAAAATA-C--TCCTAANAGTATACGTTTGTGNTTGA-T-GTAATAT-TCGACCCATATACATTCNAGNNGGTTGATTTCGAGGTCGTNTCTACGTTTGTAG------TGTAT-TGTNTCTTTA-ATG--AA-CANNATAACACCACCGTG---GCTATCTCCAACGCGATCTTTTCTTNCTGGTTTGTGAAANG-ANGGAA--GCATT-ATATCATCAGTTGA-G-AACAGNATCA-TCGAGCCAAGTTTCGGAAAAAGTNAGTATATCAAA----NCCATATAGTTCGG-----A-GTAGA-TGATATCCAATTTGT-GCTTNATACTCTGAACGTTGTAGTGNACNAACGACAAATTATTCGAAAAGTCTA--GAGCT--T-CG-AAATTA-C--GAT-GA--GA-TGAGGTAGATTGAGTACTA-CTGACAGA-GCTTG-T-ATCAGAT-GCAAGTAGTCCNACGGGGCCTGGGTTTGGGTGNACATCTCCTGA---TAA-----CAACAATATGACCGATAG--CCAAGTTAGGAAAGTGATCGCAAATA---TCATAG-ATGCAATG-------TATTTAGTCAAGNCTATATTTTCTGTGTATGTTTT
Reference ( family-940 ) : TAGGAGGTCTGTAAAATA-C--TCCTAANAGTATACGTTTGTGNTTGA-T-GTAATAT-TCGACCCATATACATTCNAGNNGGTTGATTTCGAGGTCGTNTCTACGTTTGTAG------TGTAT-TGTNTCTTTA-ATG--AA-CANNATAACACCACCGTG---GCTATCTCCAACGCGATCTTTTCTTNCTGGTTTGTGAAANG-ANGGAA--GCATT-ATATCATCAGTTGA-G-AACAGNATCA-TCGAGCCAAGTTTCGGAAAAAGTNAGTATATCAAA----NCCATATAGTTCGG-----A-GTAGA-TGATATCCAATTTGT-GCTTNATACTCTGAACGTTGTAGTGNACNAACGACAAATTATTCGAAAAGTCTA--GAGCT--T-CG-AAATTA-C--GAT-GA--GA-TGAGGTAGATTGAGTACTA-CTGACAGA-GCTTG-T-ATCAGAT-GCAAGTAGTCCNACGGGGCCTGGGTTTGGGTGNACATCTCCTGA---TAA-----CAACAATATGACCGATAG--CCAAGTTAGGAAAGTGATCGCAAATA---TCATAG-ATGCAATG-------TATTTAGTCAAGNCTATATTTTCTGTGTATGTTTT
gi|19193 : TAGGAGGTCTGTAGAATA-A--TCCTAATAGTAAACGTTTGTTATTGA---GTAATATATCGACCCATATACATTCAAGTGGGTTGATTTCAAGATCGTGTCTACGTTTGTAG------TGTAT-TGTGTCTTTA-ATG--AA-TAACATGACCCCTCCGTG---GTTGTCTCCAATGCGATCTTTTCTTTCTGGTTTGTTAAAAG-AAGGAA--GCATC-ATATCATCAGTTGA---AACAGAATCA-TCGAGCCATGTTTCAGTAAAAGTAAGTATATCAAA----ACCATATAATTCGG-----A-GTAGA-TGATATCCAATTTGT-GCTTTATACTCTGAACGTTGTAGTGTACTAACGACAAATTATTCGAAAAATCTA--GAGCT--T-CG-AAATTA-C--AAT-GA--GA-TGAGGTGGATTGAGTACTA-CTGACAGA-GCTTG-T-ATCAGAT-ATAAGTAGTTCAATGGGGCCTGGGTTTGGGTGTACATCTCCTGA---TAA-----CAACAATATGACCGATAG--CCAAGTTAGGAAAGTGATCGCAAATA---TCATAG-ATGCAATG-------CATTTAGTCAAGTCTATATTTTCTGTGTATGTTTT
gi|19194 : TAGGAGGTCTGTAGAATA-A--TCCTAATAGTAAACGTTTGTTATTGA---GTAATATATCGACCCATATACATTCAAGTGGGTTGATTTCAAGATCGTATCTACGTTTGTAG------TGTAT-TGTGTCTTTA-ATG--AA-TAACATGACCCCTCCGTG---GTTGTCTCCAATGCGATATTTTCTTTCTGGTTTGTTAAAAG-AAGGAA--GCATC-ATATCATCAGTTGA---AACAGAATCA-TCGAGCCATGTTTCAGTAAAAGTAAGTATATCAAA----ACCATATAATTCGG-----A-GTAGA-TGATATCCAATTTGT-GCTTTATACTCTGAACGTTGTAGTGTACTAACGACAAATTATTCGAAAAATCTA--GAGCT--T-CG-AAATTA-C--AAT-GA--GA-TGAGGTGGATTGAGTACTA-CTGACAGA-GCTTG-T-ATCAGAT-GTAAGTAGTTCAATGGGGCCTGGGTTTGGGTGTGCATCTCCTGA---TAA-----CAACAATATGACCGATAA--CCAAGTTAGGAAAGTGATCGCAAATA---CCATAG-ATGCAATG-------CATTTAGTCAAGTCTATATTTTCTGTGTATGTTTT
gi|19195 : TAGGAGGTCTGTAGAATA-C--TCCTAATAGTCAACGTTTGTTATTGA---GTAATATATCGACCCATATACATTCAAGTGGGTTGATTTCAAGATCGTGTCTACGTTTGTAG------TGTAT-TGTGTCTTTA-ATG--AA-TAGCATGACCCCTCCGTG---GTTATCTCCAATGCGATCTTTTCTTTCTGGTTTGTTAAAAG-AAGGAA--GCACC-ATATCATCAGTTGA---AACAGAATCA-TCGAGACATGTTTTAGTAAAAGTAAGTATATCAAA----ACCATATAGTTCGG-----A-GTAGA-TGATATCCAATTTGT-GCTTTATACTCT-AACGTTGTAGTGTAATAACGACAAATTATTCGAAAAATCTA--GAGTT--T-CG-AAATTA-C--AAT-GA--GA-TGAGGTGGATTGAGTACTA-CTGACAGA-GCTTG-T-ATCAGAC-GTAAGTAGTTCAATGGGGCCTGGGTTTGGGTGTACATCTCCTGA---TAA-----CAACAATATGACCGATAG--CCAAGTTAGGAAAGTGATCGCAAATA---TCATAG-ATACAATG-------TATTTAGTCAAGTCTATATTTTCTATGTATGTTTT
gi|19196 : TAGAAGGTCTGTAGAATA-C--TCCTAATAGTAAACGTTTGTTATTGA---GTAATATATCGACCCATATACATTCAAGTGGGTTGATTTCAAGATCGTGTCTACGTTTGTAG------TGTAT-TGTGTCTTTA-ATG--AA-TAACATGAC-CCTCCGTG---GTTGTCTCCAATGCGATCTTTTCTTTCTGGTTTGTTAAAAG-AAGGAA--GCACC-ATATCATCAGTTGA---AACAAAATCA-TCGAGCCATGTTTCAGTAAAAGTAAGTATATCAAA----ACCATATAGTTCGG-----A-GTAGA-TGATATCCAATTTGT-GCTTTATACTCTGAACGTTGTAGTGTACTAATGACAAATTATTCGAAAAATTTA--GAGCT--T-CG-CAATTA-C--AAT-GA--GA-GGAGGTAGAATGAGTACTA-CTGACAGA-GCTTG-T-ATCAGAT-GGAA-TAGTTCAATGGTGCCTGGGTTTGGGTGTACATCTCCTGA---TAA-----CAACAATATGACCGATAG--CCAATTTAGGAAAGTGATCGCAAATA---TCAAAA-ATGCAATG-------TATTTAGTTAAGATTACATTTCCTGTGTATGTTTT
gi|19197 : TAGGGGGTCAGTAATACA-G--TCCAAATAATATATGTTTATGTTTGA-TTATAAT-T-TCGATCAATATACATTTAATTGCATGGGGTTCAAGGTCCTTTCTACGTTTGTAA------TATACATAATTATTTACATA--AAGCAAC---ACACCACCATGACTGCTAT---CAACACGATCTTTTCTCTCGGGATTTTAAAAGGAATACAA----ATTAAGGTCATGAGATGA--------TATTGTTTG------GTTTCTGAAAAAGCCAGAATATTAAA----ATCACTTAGTTCGGT----ACGTAG--T-ATATCAAGTTTGT-TGTAAATGCTTTGGACATTGTAGTGAACGAATGACAAGTGTTTTGATAGGCCTATTGAATTACT-CGCAGAGTA-A--GA---A--AA-TGAGGAAG-TT--GTACTATTTGAC--------G-T----------CAAG-------ACTGGGCCGGGGTTAGGGTGCACATCTCCTGA---TAC-----TAACACTAGTACAAATAA--CCAAGCT
gi|19198 : GGAGGTCTGTAAAAAA-C--TCCTAAGAGTATATGTCTGTGCTTAA-TAGTAAT-T-TCAACCCATACGCATTCTAGACGATTGATTTCTAAGTCATTTCTGTGAGAAAAA------TGAAT-TGTCTCTTTA-ATA--TA-CATAATAACACCACCGT-------ATCCCCAATGCGATCTTTTCTTATTGGTTTATGGAATG-ATGGAA----ATT-CTAG-ATCAGCTGACGCAACAGTATCA-TTAAGCCAAGTTTCGGAGAATGTTAATATGTCAAA----CCCATACAGTTCAG-----A-GTAGA-TTGTATCTAATTTGT-ATTTGATACTTTGAACATTATAATGCACAAGAGAAAGATTATGTGAAAAGTCGA--AGGCT--T-CC-AAACTA-CCTGATAGG--AA-CGAGGAAGA-TGAA----A-CTG--AGA----TGTT-ATT---T-GCAATTGAGCCTACATGACCTGGGTTTGGGTGAATATCTCC--A---CAAGTCAGCAACAGAATGA
gi|19199 : GGAGGTCTGTAGAAAA-C--TCCTAAGAGTATATGTCTGTACGTTA-TAGTAAT-T-TCAACCCATATGCATTCTAGACGATTGATTTCTAAGTCATTTCTACG-----AGAAAAATTGAAT-TGTCTTTTTA-ATA--TA-CATAATAACACCACCGTG---GATATCTCCAATGCGATCTGTTCTTATTGGTTTATGGAATG-CTGGAA----ATT-CTAT-ATCAGCTGACGCAACAGTATCA-TTAATCCAAGTTTCGGAGAATGTTTATATATCAAA----TCCATACAGTTCAG-----A-GTAGA-TTGTATCTTATCTAT-ATTTGATACTTTGAACATTATAACGAACAAGAGAAAGATTATATGAAAAGTCCA--AGGCT--T-CC-AAACTA-TCTGAT-AG--GAACGAGGAAGAT-GAA----A-CTGA--GA----TG-TTATT---T-ACAGTTGGGCCTATAGGACATGGGTTTGGGTGAATATATCC--A---CAAGTCAGCAATAACATGA---AGGG--CCATGTTAG--CAGTGAT
gi|19200 : GGAGGTCTGTAAAATA-C--TCCAATGAGAATATGTCTGTGTTCAA-TAGTAA-GT-TCAACCCATATGCATTCTAGACGATTGATTTCTAAGTCATTTCTACGAGAAAAA------TGAAT-TGTATCTTTA-ATG--TA-CATAATAATACCACCGCG---GCTATCTCCAACGCGATCTTTTCTTATTGGTTTATGGAACG-CTGGGA----ATT-CTAG-ATCAGATGATGCAATAGTATCA-TTAAGCCAAGTTTCAGAGAAAGCTAATATATCAAA----TCCATATAGTTCAG-----A-GTAAAATG-TATCTAATTTAT-ATCTAATACTTTGAACATTATAATGAACAAGAGAAAGACGATGTGAAAAGTCCA--AGGCT--T-TC-AAACTATC--TGT-AAAGGA-TGAGGTTGAT-GAA----A-CTGA--GTTGTTGG-T-AACAGTT-G-----AG-CCTATAGGACCTAGGTTTGGGTGAATATCTCCACA---AGA-----CAGCAGTAGAAT--ATAGGTCCATGTAAG--AAGTG-TTGTAAA-------ACAA-ACGGAACGTATGAAATATTTGGTAAAAAATATATTATCT
gi|19201 : GGAGGTCTGTAAAATA-C--TCCTAAGAGTATATGTGTGTGTTTAA-TTGTAAT-T-TCAACCCAAATGCATCCCAGATGATTGGTTTCTAGGTCATTTCTACGAGAAAAA------TGAAC-TACCTCTTTA-ATGTTAA-TA--ATAACACCACCGCG---GCTAACTCCAACGCGATCTTTTCTTATTGGTTTACGGAATG-CTGGAA----ATT-CTAG-ATCAGCTGACGCAACAGTATCA-TTAAGTCAAGTTACGGAGAATGTTAATAAATCAAA----CCCATATAGTTCAG-----A-GTAAA-CTGTATCTAATTTAC-ATTTGATACTTTGAACATTAAAATGAACAAAAGAAAGGTGATGTAAAAAGTCCA---AACTA-TGTG-AAAT-------AT-AT--GA-TGAGGTAGA-TGAA----A-CTG--AGA-------T-GTCAGTT-GCAATTGGGCCTGTAGGACCTGGGTTTTGGTGAATATCTCCAGAAGTCAA-----CAATAAAATGA---ATAA--CCATGTTAGG--AGTG-TTGTAAACAAACTGACCGTATGAAA---------TATTTGGTAAAAATTATATTATCT
gi|19202 : GGGGGTCTGTAA--TA-CCGTCCAAATAATATATGTTTATGTTTGA-TTATAAT-T-TCGATCCATATACATTCAATTGCATGGGGTTCAAGGTCCTTTCTACGTTTGTAA------TGTA
gi|19203 : GGAGGTCGGTAAACTA-C--ACAAAGGAGTATATGTTTGTTATTAAGT-GAAATAT--CGATCCAGATACATTCTAAACAGTTTAATTCGAGATCTAGCCTGCGTTTGTA-------TGTAA-AGT-TCTT---ATA--TA-TACAATAACTCAACCATG---ACTACCACCATAACGGTATTTCCTTTTAGATTTTTGAAATG-ACAGAA--TAAGT-AGTTCTTCGGTAG--G-TATGGATTCA-TGTAACCAAGTTTCGGAGAATGTTAGGATGTCGAA----TTGATTAAGTTCTGCACTAA-GCAG------GTCTAGTTTATAGCGTAA-ACTTTGGACATTATAATGAATTAAAGATAAGTTAT
gi|19204 : AGGTCTGTAAAAAAAC--TCCTGAAAATATATGTCTGTGCTTAA-TAGTAAT-T-TCAACCCATACGCATTCTAGACGGTTGATTTCGAAGTATTTTCTACG-----AGAAAAACTA-AT-TGTATCTTTA-ATA--AA-CATAATAACACCACCGTG---ACTATCTTCAATGCGATCTTTTCTTATTGGTTTG
gi|19205 : GAGTTCGAGGTCAGGTCAAAGGATATAG------TGTAA-AG-------A-ATA--AG-C--TATAACACCTCCGTG---GCTGCCACCGATCCGGTCTTTACGTTCCGGTATG-GATAAG-TTGGAAAAGCA---ATGTCATCAGTCG--G-AATAGATTCA-TTTAGCCAAGATTCTGAAAAAATTAAAACGTCAAA----GTGAAAAAGTTCTG-----T-TTTCA-ACAAGTCTAGTTTGG-GTAATATACTCTGGCTGCTGTAGTGAATGATTGATACATTATGAGAGAAATCGA--GAG
gi|19206 : ACCCTACCATG---GTTATCGCCAAAACGGT-TTTACGGATTGGTTTGTGAAAAC-CAGGGA--CAATT-ATGTCGTCAGTGGA-G--ATGGCGTTG-TTTAGCCAAGTTTCAGAAAAGGTCAGAACATCGGAGGACCCCA---AG-TCGGCT---G-CTAG--TGA-GTCAACCTTAT-GATACAGGCTTTGTACATTGTAGTGAACTACCGA
gi|19207 : GCCAAGTTTCTGAAAAAGCCAGAATATCAAA----ATTACTTAGTTCGGT----ACGTAGA---ATATCAAGTTTGT-TGTAAATGCTTTGGACATTGTAGTGAACGAATGACAAGTGTTTTGACAGGTCTACTGAATTACT-CGCAGAGTA-A--GA---A--AA-TGAGGAAG-TTG-----TA-CTG---GA-ATTT--------GACGGCAAG-------ACTGGGCCAGGGTTAGGGTGCACATCTCCTGA---TAA-----TAACACTAATACAAATAA--CCAA
gi|19208 : -TGATATCCAACTTGT-GCTGTATACTCTGAACGTTGTAGTGTACTAATTACAAATAACTCGAGAAATCTA--GAGCT--T-
blockSeqs : A CG T TA TT ATA A TG A G A TTT AAAAAT T A G C TT G AC C T ACT T T A AAT AAGC A C CGC A T CG A A GGACC CACTAA AATG C A C TT T T C TC TT AC G C CCTG TAAAG A T ATT TACT T ACAGAGCTTGTATCAGATGTAAGTAGTT A TG T T AGT GTCAG CCG GT GA A T AAC T T TATGAAA C T
blockSeqs : . . T TA TA ATA A TG A G G TTT AAAAAC T . G . . . GC C T . T T A AA GC . C CGC A . CG A A A TAC ATG C . C TT T T C TC CT AC . C TCTG TAGG . T ATT TACT . ACAGAGCTTGTATCAGACGTAAGTAGTT A TG T T . GTCAG CCG . GA A T . . T . C T
blockSeqs : . . T TA TA ATA A TG A G G TTT . T . G . . . AC A T . T T A AA GC . C TGC A . CG A A A CTG ATG C . C TT T T T TC . A . . TCT TGA . T AAT TACT . ACAGAGCTTGTATCAGATGGAATAGTT A TG T T . . CCG . GA A T . . T . T A
blockSeqs : . . T GT TA GT A TG A C T TTT . T . T . . . AC A A . C T G AA GC . C CGC T . TG T C A TAC ATG A . G AA A G T TT . . . . CA TGA . A TT TACT . AGATGTTATTTGCAATTGAGC T CT C T . . CAA . G A C . . C . A A
blockSeqs : . . G GC TT AT T AC T A T AGA . A . C . . . TA A A . T A T AT TA . C G T . TA G T A A ATT T . T TG C A A GT . . . . CA TGA . A AT T . AGATGTTATTTACAGTTGGGC T CA A A . . CAA . . . . . . . . A A
blockSeqs : . . G AC TT T T AC T A T AGA . A . C . . . TA A A . T A T CT CA . C G T . TA G T C A ATT T . T TG A A A AT . . . . CA TAG . A AT . . AGTTGTTGGTAACAGTTGAGC T TA A A . . T . . .
blockSeqs : . . G GT GT T T AC T A T AGA . A . A . . . TA A A . C A C CT . . C G T . TA A T T A ACT T . T TA A A A GT . . . . AG TAT . T AT . . AGATGTCAGTTGCAATTGGGC T TA A T . . . .
blockSeqs : . . G GT TA T C AT T A T TTT . A . C . . . CA T A . C A T CT . . . . T . TA G T T A AAC T . T TG A A A GT . . . . AG A . T AT . . GAATTTGACGGCAAG . TA A . . . . .
blockSeqs : . . T GT . T A TG A C T TTT . T . A . . . TA A A . A T T AC . . . . A . GT G T C A TG T . C TA A T A GA . . . . . A . A TT . . ACGTCAAG . CT C . . .
blockSeqs : . . G TA . T T AC G T G GAT . T . . . . . T A A . T A A TT . . . . A . TT T T T A T T . T AT A G T TT . . .
blockSeqs : . . A GC . T T AC G T T . . T . . . . . . C T . T T A CA . . . . C . TT A C G A A A . A AC A T C TC .
blockSeqs : G A G . . . . A . A A T C A T . A . G AA A G T
blockSeqs : C . C GT T T T
blockSeqCons : TN* T** G** AT* ACAGAGCTTGTGTCAGNTGCAATTGGGC****
originalCons : TAGGAGGTCTGTAAAATA-C--TCCTAANAGTATACGTTTGTGNTTGA-T-GTAATAT-TCGACCCATATACATTCNAGNNGGTTGATTTCGAGGTCGTNTCTACGTTTGTAG------TGTAT-TGTNTCTTTA-ATG--AA-CANNATAACACCACCGTG---GCTATCTCCAACGCGATCTTTTCTTNCTGGTTTGTGAAANG-ANGGAA--GCATT-ATATCATCAGTTGA-G-AACAGNATCA-TCGAGCCAAGTTTCGGAAAAAGTNAGTATATCAAA----NCCATATAGTTCGG-----A-GTAGA-TGATATCCAATTTGT-GCTTNATACTCTGAACGTTGTAGTGNACNAACGACAAATTATTCGAAAAGTCTA--GAGCT--T-CG-AAATTA-C--GAT-GA--GA-TGAGGTAGATTGAGTACTA-CTGACAGA-GCTTG-T-ATCAGAT-GCAAGTAGTCCNACGGGGCCTGGGTTTGGGTGNACATCTCCTGA---TAA-----CAACAATATGACCGATAG--CCAAGTTAGGAAAGTGATCGCAAATA---TCATAG-ATGCAATG-------TATTTAGTCAAGNCTATATTTTCTGTGTATGTTTT
finalCons : TAGGAGGTCTGTAAAATA-C--TCCTAANAGTATACGTTTGTGNTTGATN-GTAATT--TCGACCCATATACATTCNAGNNGGTTGATTTCGAGGTCGTNTCTACGTTTGTAG------TGTAT-TGTNTCTTTA-ATG--AA-CANNATAACACCACCGTG---GCTATCTCCAACGCGATCTTTTCTTNCTGGTTTGTGAAANG-ANGGAA--GCATT-ATATCATCAGTTGAG--AACAGNATCA-TCGAGCCAAGTTTCGGAAAAAGTNAGTATATCAAA----NCCATATAGTTCGG-----A-GTAGA-TGATATCCAATTTGT-GCTTNATACTCTGAACGTTGTAGTGNACNAACGACAAATTATTCGAAAAGTCTA--GAGCT--T-CG-AAATTA-C--GAT-GA--GA-TGAGGTAGAT-GAGTACTA-CTGACAGAGCTTGTGTCAGNTGCAATTGGGC----CNACGGGGCCTGGGTTTGGGTGNACATCTCCTGA---TAA-----CAACAATATGACCGATAG--CCAAGTTAGGAAAGTGATCGCAAATA---TCATAG-ATGCAATG-------TATTTAGTCAAGNCTATATTTTCTGTGTATGTTTT
Alignments
lowQualScore : 11 111 111111 2222 333 1111111 11 1111111111111 111 11 2222222222 22222 111 111 2222222
lowQualScore : 3 44 1 0 22 55 999 1 22 5 3 1 999 0 777777 2 3 5 3 44 3 77 4 1 555 3 1 1 555 4444 3 4 777 1 3 33 0 3 0 1 0 77777 8888888 3 555 2 2 1 11 1 1 4 0 0 11 99 33 3 8 0 7777777777777 1 222 33 4 5555555555 33 9 2 1 55 1 6 777 00000 111 66 99 5 1 111 0 6 1 1111111 1 1
lowQualScore : . .. . . .. .. ... . .. . . . ... . ...... . . . . .. . .. . . ... . . . ... .... . . ... . . .. . . . . . ..... ....... . ... . . . .. . . . . . .. .. .. . . . ............. . ... .. . .......... .. . . . .. . . ... ..... ... .. .. . . ... . . . ....... . .
lowQualScore : 3 66 0 7 88 00 888 0 00 1 8 0 333 7 777777 8 3 4 3 66 3 66 2 0 444 7 0 0 555 2222 3 6 555 0 3 00 8 2 2 0 8 55555 4444444 1 777 2 9 1 11 0 0 6 2 4 22 22 66 6 0 3 1111111111111 4 222 66 0 4444444444 44 5 5 0 11 0 0 000 00000 444 11 11 0 7 777 3 7 7 7777777 0 0
consensus : TAGGAGGTCTGTAAAATA-C--TCCTAANAGTATACGTTTGTGNTTGAT-GTAAT-T-TCGACCCATATACATTCNAGNNGGTTGATTTCGAGGTCGTNTCTACGTTTGTAG------TGTAT-TGTNTCTTTA-ATG--AA-CANNATAACACCACCGTG---GCTATCTCCAACGCGATCTTTTCTTNCTGGTTTGTGAAANG-ANGGAA--GCATT-ATATCATCAGTTGA-G-AACAGNATCA-TCGAGCCAAGTTTCGGAAAAAGTNAGTATATCAAA----NCCATATAGTTCGG-----A-GT-AGATGATATCCAATTTGT-GCTTNATACTCTGAACGTTGTAGTGNACNAACGACAAATTATTCGAAAAGTCTA--GAGCT--T-CG-AAATTA--C--GAT-GA--GATGAGGTAG-A-TGAGTACTA-CTGACAGAGCTTGTGTCAGNTGCAANTGGGCCNATGGGGCCTGGGTTTGGGTGNACATCTCCTGA---TAA-----CAACAATATGACCGATAG--CCAAGTTAGGAAAGTGATCGCAAATA---TCATAG-ATGCAATG-------TATTTAGTCAAGNCTATATTTTCTGTGTATGTTTT
Reference ( family-940 ) : TAGGAGGTCTGTAAAATA-C--TCCTAANAGTATACGTTTGTGNTTGATNGTAAT-T-TCGACCCATATACATTCNAGNNGGTTGATTTCGAGGTCGTNTCTACGTTTGTAG------TGTAT-TGTNTCTTTA-ATG--AA-CANNATAACACCACCGTG---GCTATCTCCAACGCGATCTTTTCTTNCTGGTTTGTGAAANG-ANGGAA--GCATT-ATATCATCAGTTGA-G-AACAGNATCA-TCGAGCCAAGTTTCGGAAAAAGTNAGTATATCAAA----NCCATATAGTTCGG-----A-GT-AGATGATATCCAATTTGT-GCTTNATACTCTGAACGTTGTAGTGNACNAACGACAAATTATTCGAAAAGTCTA--GAGCT--T-CG-AAATTA--C--GAT-GA--GATGAGGTAG-A-TGAGTACTA-CTGACAGAGCTTGTGTCAGNTGCAATTGGGCCNACGGGGCCTGGGTTTGGGTGNACATCTCCTGA---TAA-----CAACAATATGACCGATAG--CCAAGTTAGGAAAGTGATCGCAAATA---TCATAG-ATGCAATG-------TATTTAGTCAAGNCTATATTTTCTGTGTATGTTTT
gi|19193 : TAGGAGGTCTGTAGAATA-A--TCCTAATAGTAAACGTTTGTTATTGA--GTAATATATCGACCCATATACATTCAAGTGGGTTGATTTCAAGATCGTGTCTACGTTTGTAG------TGTAT-TGTGTCTTTA-ATG--AA-TAACATGACCCCTCCGTG---GTTGTCTCCAATGCGATCTTTTCTTTCTGGTTTGTTAAAAG-AAGGAA--GCATC-ATATCATCAGTTGA---AACAGAATCA-TCGAGCCATGTTTCAGTAAAAGTAAGTATATCAAA----ACCATATAATTCGG-----A-GT-AGATGATATCCAATTTGT-GCTTTATACTCTGAACGTTGTAGTGTACTAACGACAAATTATTCGAAAAATCTA--GAGCT--T-CG-AAATTA--C--AAT-GA--GATGAGGTGG-ATTGAGTACTA-CTGACAGAGCTTGTATCAGATATAAGTAGTTCAATGGGGCCTGGGTTTGGGTGTACATCTCCTGA---TAA-----CAACAATATGACCGATAG--CCAAGTTAGGAAAGTGATCGCAAATA---TCATAG-ATGCAATG-------CATTTAGTCAAGTCTATATTTTCTGTGTATGTTTT
gi|19194 : TAGGAGGTCTGTAGAATA-A--TCCTAATAGTAAACGTTTGTTATTGA--GTAATATATCGACCCATATACATTCAAGTGGGTTGATTTCAAGATCGTATCTACGTTTGTAG------TGTAT-TGTGTCTTTA-ATG--AA-TAACATGACCCCTCCGTG---GTTGTCTCCAATGCGATATTTTCTTTCTGGTTTGTTAAAAG-AAGGAA--GCATC-ATATCATCAGTTGA---AACAGAATCA-TCGAGCCATGTTTCAGTAAAAGTAAGTATATCAAA----ACCATATAATTCGG-----A-GT-AGATGATATCCAATTTGT-GCTTTATACTCTGAACGTTGTAGTGTACTAACGACAAATTATTCGAAAAATCTA--GAGCT--T-CG-AAATTA--C--AAT-GA--GATGAGGTGG-ATTGAGTACTA-CTGACAGAGCTTGTATCAGATGTAAGTAGTTCAATGGGGCCTGGGTTTGGGTGTGCATCTCCTGA---TAA-----CAACAATATGACCGATAA--CCAAGTTAGGAAAGTGATCGCAAATA---CCATAG-ATGCAATG-------CATTTAGTCAAGTCTATATTTTCTGTGTATGTTTT
gi|19195 : TAGGAGGTCTGTAGAATA-C--TCCTAATAGTCAACGTTTGTTATTGA--GTAATATATCGACCCATATACATTCAAGTGGGTTGATTTCAAGATCGTGTCTACGTTTGTAG------TGTAT-TGTGTCTTTA-ATG--AA-TAGCATGACCCCTCCGTG---GTTATCTCCAATGCGATCTTTTCTTTCTGGTTTGTTAAAAG-AAGGAA--GCACC-ATATCATCAGTTGA---AACAGAATCA-TCGAGACATGTTTTAGTAAAAGTAAGTATATCAAA----ACCATATAGTTCGG-----A-GT-AGATGATATCCAATTTGT-GCTTTATACTCT-AACGTTGTAGTGTAATAACGACAAATTATTCGAAAAATCTA--GAGTT--T-CG-AAATTA--C--AAT-GA--GATGAGGTGG-ATTGAGTACTA-CTGACAGAGCTTGTATCAGACGTAAGTAGTTCAATGGGGCCTGGGTTTGGGTGTACATCTCCTGA---TAA-----CAACAATATGACCGATAG--CCAAGTTAGGAAAGTGATCGCAAATA---TCATAG-ATACAATG-------TATTTAGTCAAGTCTATATTTTCTATGTATGTTTT
gi|19196 : TAGAAGGTCTGTAGAATA-C--TCCTAATAGTAAACGTTTGTTATTGA--GTAATATATCGACCCATATACATTCAAGTGGGTTGATTTCAAGATCGTGTCTACGTTTGTAG------TGTAT-TGTGTCTTTA-ATG--AA-TAACATGAC-CCTCCGTG---GTTGTCTCCAATGCGATCTTTTCTTTCTGGTTTGTTAAAAG-AAGGAA--GCACC-ATATCATCAGTTGA---AACAAAATCA-TCGAGCCATGTTTCAGTAAAAGTAAGTATATCAAA----ACCATATAGTTCGG-----A-GT-AGATGATATCCAATTTGT-GCTTTATACTCTGAACGTTGTAGTGTACTAATGACAAATTATTCGAAAAATTTA--GAGCT--T-CG-CAATTA--C--AAT-GA--GAGGAGGTAGAA-TGAGTACTA-CTGACAGAGCTTGTATCAGATGGAA-TAGTTCAATGGTGCCTGGGTTTGGGTGTACATCTCCTGA---TAA-----CAACAATATGACCGATAG--CCAATTTAGGAAAGTGATCGCAAATA---TCAAAA-ATGCAATG-------TATTTAGTTAAGATTACATTTCCTGTGTATGTTTT
gi|19197 : TAGGGGGTCAGTAATACA-G--TCCAAATAATATATGTTTATGTTTGATTATAAT-T-TCGATCAATATACATTTAATTGCATGGGGTTCAAGGTCCTTTCTACGTTTGTAA------TATACATAATTATTTACATA--AAGCAAC---ACACCACCATGACTGCTAT---CAACACGATCTTTTCTCTCGGGATTTTAAAAGGAATACAA----ATTAAGGTCATGAGATGA--------TATTGTTTG------GTTTCTGAAAAAGCCAGAATATTAAA----ATCACTTAGTTCGGT----ACGT-AG-T-ATATCAAGTTTGT-TGTAAATGCTTTGGACATTGTAGTGAACGAATGACAAGTGTTTTGATAGGCCTATTGAATTACT-CGCAGAGTA--A--GA---A--AATGAGGAAG-T-T--GTACTATTTGAC---------GTCAAG----ACTGGGCCG---------GGGTTAGGGTGCACATCTCCTGA---TAC-----TAACACTAGTACAAATAA--CCAAGCT
gi|19198 : GGAGGTCTGTAAAAAA-C--TCCTAAGAGTATATGTCTGTGCTTAATAGTAAT-T-TCAACCCATACGCATTCTAGACGATTGATTTCTAAGTCATTTCTGTGAGAAAAA------TGAAT-TGTCTCTTTA-ATA--TA-CATAATAACACCACCGT-------ATCCCCAATGCGATCTTTTCTTATTGGTTTATGGAATG-ATGGAA----ATT-CTAG-ATCAGCTGACGCAACAGTATCA-TTAAGCCAAGTTTCGGAGAATGTTAATATGTCAAA----CCCATACAGTTCAG-----A-GT-AGATTGTATCTAATTTGT-ATTTGATACTTTGAACATTATAATGCACAAGAGAAAGATTATGTGAAAAGTCGA--AGGCT--T-CC-AAACTA--CCTGATAGG--AACGAGGAAG-A-TGAA----A-CTG--AGA-----TGTTATTTGCAATTGAGCCTACATGACCTGGGTTTGGGTGAATATCTCC--A---CAAGTCAGCAACAGAATGA
gi|19199 : GGAGGTCTGTAGAAAA-C--TCCTAAGAGTATATGTCTGTACGTTATAGTAAT-T-TCAACCCATATGCATTCTAGACGATTGATTTCTAAGTCATTTCTACG-----AGAAAAATTGAAT-TGTCTTTTTA-ATA--TA-CATAATAACACCACCGTG---GATATCTCCAATGCGATCTGTTCTTATTGGTTTATGGAATG-CTGGAA----ATT-CTAT-ATCAGCTGACGCAACAGTATCA-TTAATCCAAGTTTCGGAGAATGTTTATATATCAAA----TCCATACAGTTCAG-----A-GT-AGATTGTATCTTATCTAT-ATTTGATACTTTGAACATTATAACGAACAAGAGAAAGATTATATGAAAAGTCCA--AGGCT--T-CC-AAACTATCT--GATAGG--AACGAGGAAG-A-TGAA----A-CTG--AGA-----TGTTATTTACAGTTGGGCCTATAGGACATGGGTTTGGGTGAATATATCC--A---CAAGTCAGCAATAACATGA---AGGG--CCATGTTAG--CAGTGAT
gi|19200 : GGAGGTCTGTAAAATA-C--TCCAATGAGAATATGTCTGTGTTCAATAGTAAG-T-TCAACCCATATGCATTCTAGACGATTGATTTCTAAGTCATTTCTACGAGAAAAA------TGAAT-TGTATCTTTA-ATG--TA-CATAATAATACCACCGCG---GCTATCTCCAACGCGATCTTTTCTTATTGGTTTATGGAACG-CTGGGA----ATT-CTA-GATCAGATGATGCAATAGTATCA-TTAAGCCAAGTTTCAGAGAAAGCTAATATATCAAA----TCCATATAGTTCAG-----A-GTAAAATG-TATCTAATTTAT-ATCTAATACTTTGAACATTATAATGAACAAGAGAAAGACGATGTGAAAAGTCCA--AGGCT--T-TC-AAACTAT-C--TGT-AAAGGATGAGGTTG-A-TGAA-ACT--------GAGT---TGTTGGTAACAGTTGAGCCTATAGGACCTAGGTTTGGGTGAATATCTCCACA---AGA-----CAGCAGTAGAAT--ATAGGTCCATGTAAG--AAGTG-TTGTAAA-------ACAA-ACGGAACGTATGAAATATTTGGTAAAAAATATATTATCT
gi|19201 : GGAGGTCTGTAAAATA-C--TCCTAAGAGTATATGTGTGTGTTTAATTGTAAT-T-TCAACCCAAATGCATCCCAGATGATTGGTTTCTAGGTCATTTCTACGAGAAAAA------TGAAC-TACCTCTTTA-ATGTTAA-TA--ATAACACCACCGCG---GCTAACTCCAACGCGATCTTTTCTTATTGGTTTACGGAATG-CTGGAA----ATT-CTAG-ATCAGCTGACGCAACAGTATCA-TTAAGTCAAGTTACGGAGAATGTTAATAAATCAAA----CCCATATAGTTCAG-----A-GT-AAACTGTATCTAATTTAC-ATTTGATACTTTGAACATTAAAATGAACAAAAGAAAGGTGATGTAAAAAGTCCA---AACTA-TGTG-AAAT--------AT-AT--GATGAGGTAG-A-TGAA----A-CTG--AGA-----TGTCAGTTGCAATTGGGCCTGTAGGACCTGGGTTTTGGTGAATATCTCCAGAAGTCAA-----CAATAAAATGA---ATAA--CCATGTTAGG--AGTG-TTGTAAACAAACTGACCGTATGAAA---------TATTTGGTAAAAATTATATTATCT
gi|19202 : GGGGGTCTGTAA--TA-CCGTCCAAATAATATATGTTTATGTTTGATTATAAT-T-TCGATCCATATACATTCAATTGCATGGGGTTCAAGGTCCTTTCTACGTTTGTAA------TGTA
gi|19203 : GGAGGTCGGTAAACTA-C--ACAAAGGAGTATATGTTTGTTATTAAGTGAAAT-A-TCGATCCAGATACATTCTAAACAGTTTAATTCGAGATCTAGCCTGCGTTTGTA-------TGTAA-AGT-TCTT---ATA--TA-TACAATAACTCAACCATG---ACTACCACCATAACGGTATTTCCTTTTAGATTTTTGAAATG-ACAGAA--TAAGT-AGTTCTTCGGTAG--G-TATGGATTCA-TGTAACCAAGTTTCGGAGAATGTTAGGATGTCGAA----TTGATTAAGTTCTGCACTAA-GC-AG-----GTCTAGTTTATAGCGTAA-ACTTTGGACATTATAATGAATTAAAGATAAGTTAT
gi|19204 : AGGTCTGTAAAAAAAC--TCCTGAAAATATATGTCTGTGCTTAATAGTAAT-T-TCAACCCATACGCATTCTAGACGGTTGATTTCGAAGTATTTTCTACG-----AGAAAAACTA-AT-TGTATCTTTA-ATA--AA-CATAATAACACCACCGTG---ACTATCTTCAATGCGATCTTTTCTTATTGGTTTG
gi|19205 : GAGTTCGAGGTCAGGTCAAAGGATATAG------TGTAA-AG-------A-ATA--AG-C--TATAACACCTCCGTG---GCTGCCACCGATCCGGTCTTTACGTTCCGGTATG-GATAAG-TTGGAAAAGCA---ATGTCATCAGTCG--G-AATAGATTCA-TTTAGCCAAGATTCTGAAAAAATTAAAACGTCAAA----GTGAAAAAGTTCTG-----T-TT-TCAACAAGTCTAGTTTGG-GTAATATACTCTGGCTGCTGTAGTGAATGATTGATACATTATGAGAGAAATCGA--GAG
gi|19206 : ACCCTACCATG---GTTATCGCCAAAACGGT-TTTACGGATTGGTTTGTGAAAAC-CAGGGA--CAATT-ATGTCGTCAGTGGA-G-A-TGGCGTTG-TTTAGCCAAGTTTCAGAAAAGGTCAGAACATCGGAGGACCCCA---AG-TCGGCT---G-CT-AG-TGA-GTCAACCTTAT-GATACAGGCTTTGTACATTGTAGTGAACTACCGA
gi|19207 : GCCAAGTTTCTGAAAAAGCCAGAATATCAAA----ATTACTTAGTTCGGT----ACGT-AGA--ATATCAAGTTTGT-TGTAAATGCTTTGGACATTGTAGTGAACGAATGACAAGTGTTTTGACAGGTCTACTGAATTACT-CGCAGAGTA--A--GA---A--AATGAGGAAG-T-TG-----TA-CTG---GAATTTG-----ACGGCAA-------GACTGGGCCAGGGTTAGGGTGCACATCTCCTGA---TAA-----TAACACTAATACAAATAA--CCAA
gi|19208 : TGATATCCAACTTGT-GCTGTATACTCTGAACGTTGTAGTGTACTAATTACAAATAACTCGAGAAATCTA--GAGCT--T-