lowQualScore : 1 1 111 1
lowQualScore : 4 5 1 2 2 222 2 0 5 777777
lowQualScore : . . . . . ... . . . ......
lowQualScore : 4 1 1 7 7 444 7 1 0 777777
consensus : ATTAACGTTTCAAACAGCGATACCCCAAAT-CA-CC--AACTTT-GCAATTAGTAGCGGTTGTAAC------TACCATTTACAGCAA
Reference ( gi|146190 ) : ATTAAGGTTTCAAACAGAGATACCCTAAAT-CA-CA--AACTTT-GCAATAAGTAGCAGTTGTAAC------TACCATTTACAGCAA
gi|146191 : ATTAACATTTAAAACAACGATACCTCAAAT-CA-CC--AACATT-GCAATGAGTAGCGGTTGTGAC------TACCATTTACAGCAA
gi|146192 : ATTAACGCTTCAAAGAGCGATAACCTATAT-CA-CC--AACTTT-GTCATCAGTAGCGGTTGTAAC------TACCATTTACAGCAA
gi|146193 : ATTTACGTTTCAAACAGTGATACTTAAAAT-CA-CC--AACTTTTGTAATGTGTAGCGGTTGTAAC------TACCATTTACAGCAA
gi|146195 : ATTAATGTTTCAAAC-GCGATACTCTAAAT-CA-TC--AAGTTA-GTAATTAGTAGCGGTTGTAAC------TACCATTTACAGAAA
gi|146196 : ATCAAAGTTTCAATTAGCAATACCCTAAAT-CA-CC--AATTTT-GCAATTAGTAGCGGTTGTAAC------TTCCATTTA
gi|146194 : ATTTACGTTTCAAACGGCGGTACCCTAAAT-CA-CC--AATTTC-GCAATTAGTTGCGATTGTAAT------TATCATTTACAGCAA
gi|146198 : ATAAACGTTTCAAACAGCGGCACCCCGAAT-CC-CA--AACTTT-GCAATTAGTAGCGTTTGTAAC------TACATTTTACAGTAA
gi|146199 : ATTAATGCTTCAAACTTCGATACCCTAAAT-CA---------------ATAAGTAGCGGTTGTAAC------TACCATTTACAGCAA
gi|146200 : ACTAACATTTCAAACAGCGACACCCCACATACA-CA--A-CTTT-GGAATAAGTAGCGGTTGTAACTACATGTACCTTTTGCAGCAA
gi|146197 : ATAAACGTTTCAAACAGCGATACCCGAACT-CA-CC--ATATAT-GCAATTATTAACGGTTGTAAC------TATCATTTACAGCAA
gi|146201 : ATTAATGCTTCAAAAATCGATACCCTAAAT-CAACAGCAATTTT---------TAGCGGTTGTAAA------TACCATTAACAGCAA
gi|146202 : TTAACATTTCAAACAACGATACCCCAAAT-CA-CA--AACTTT-GCAATTAGTAACAGTTGTAAC------CACCATTTTCAGCAA
gi|146203 : TAACATTTCAAACAGCGACACTCCAAAT-CA-CC--AACT---GCAATAAGTAGCGGGTGTAAC------TACCATTTGCAGCA
gi|146204 : TAATGTTTCAAACAGCGTAACCCTAAAT-AA-CT--AACTTT-GCAATTAGTAGCGGGTGTAAC------TACCATTTAC
gi|146205 : GCTTCAAAAAGCGATACCCAAGAT-CA-AC--AACTCT-GCAGTTAATAACGGTTGTAAC------TACCATTTTCAGCAA
Alignments
lowQualScore : 2 2 2 2 1 777777
lowQualScore : . . . . . ......
lowQualScore : 5 7 5 5 4 222222
consensus : ATTAAC-GTTTCAAACAGCGATACCCTAAATCAC-CAACTTT-GCAATTAGTAGCGGTTGTAAC------TACCATTTACAGCAA
Reference ( family-939 ) : ATTAAC-GTTTCAAACAGCGATACCCCAAATCAC-CAACTTT-GCAATTAGTAGCGGTTGTAAC------TACCATTTACAGCAA
gi|146190 : ATTAAG-GTTTCAAACAGAGATACCCTAAATCAC-AAACTTT-GCAATAAGTAGCAGTTGTAAC------TACCATTTACAGCAA
gi|146191 : ATTAAC-ATTTAAAACAACGATACCTCAAATCAC-CAACATT-GCAATGAGTAGCGGTTGTGAC------TACCATTTACAGCAA
gi|146192 : ATTAAC-GCTTCAAAGAGCGATAACCTATATCAC-CAACTTT-GTCATCAGTAGCGGTTGTAAC------TACCATTTACAGCAA
gi|146193 : ATTTAC-GTTTCAAACAGTGATACTTAAAATCAC-CAACTTTTGTAATGTGTAGCGGTTGTAAC------TACCATTTACAGCAA
gi|146194 : ATTTAC-GTTTCAAACGGCGGTACCCTAAATCAC-CAATTTC-GCAATTAGTTGCGATTGTAAT------TATCATTTACAGCAA
gi|146195 : ATTAAT-GTTTCAAAC-GCGATACTCTAAATCAT-CAAGTTA-GTAATTAGTAGCGGTTGTAAC------TACCATTTACAGAAA
gi|146196 : ATCAAA-GTTTCAATTAGCAATACCCTAAATCAC-CAATTTT-GCAATTAGTAGCGGTTGTAAC------TTCCATTTA
gi|146197 : ATAAAC-GTTTCAAACAGCGATACCCGAACTCAC-CATATAT-GCAATTATTAACGGTTGTAAC------TATCATTTACAGCAA
gi|146198 : ATAAAC-GTTTCAAACAGCGGCACCCCGAATCCC-AAACTTT-GCAATTAGTAGCGTTTGTAAC------TACATTTTACAGTAA
gi|146199 : ATTAAT-GCTTCAAACTTCGATACCCTAAATCA-------------ATAAGTAGCGGTTGTAAC------TACCATTTACAGCAA
gi|146200 : ACTAAC-ATTTCAAACAGCGACACCCCACAT-ACACAACTTT-GGAATAAGTAGCGGTTGTAACTACATGTACCTTTTGCAGCAA
gi|146201 : ATTAAT-GCTTCAAAAATCGATACCCTAAATCAA-CA------GCAATTTTTAGCGGTTGTAAA------TACCATTAACAGCAA
gi|146202 : TTAAC-ATTTCAAACAACGATACCCCAAATCAC-AAACTTT-GCAATTAGTAACAGTTGTAAC------CACCATTTTCAGCAA
gi|146203 : TAAC-ATTTCAAACAGCGACACTCCAAATCAC-CAAC--T-GCAATAAGTAGCGGGTGTAAC------TACCATTTGCAGCA
gi|146204 : TAAT-GTTTCAAACAGCGTAACCCTAAATAAC-TAACTTT-GCAATTAGTAGCGGGTGTAAC------TACCATTTAC
gi|146205 : TAACCGCTTCAAAAAGCGATACCCAAGATCAA-CAACTCT-GCAGTTAATAACGGTTGTAAC------TACCATTTTCAGCAA
Alignments
lowQualScore : 2 0 2 2 1 777777
lowQualScore : . . . . . ......
lowQualScore : 5 4 5 5 4 222222
consensus : ATTAAC-GTTTCAAACAGCGATACCCTAAATCAC-CAACTTT-GCAATTAGTAGCGGTTGTAAC------TACCATTTACAGCAA
Reference ( family-939 ) : ATTAAC-GTTTCAAACAGCGATACCCTAAATCAC-CAACTTT-GCAATTAGTAGCGGTTGTAAC------TACCATTTACAGCAA
gi|146190 : ATTAAG-GTTTCAAACAGAGATACCCTAAATCAC-AAACTTT-GCAATAAGTAGCAGTTGTAAC------TACCATTTACAGCAA
gi|146191 : ATTAAC-ATTTAAAACAACGATACCTCAAATCAC-CAACATT-GCAATGAGTAGCGGTTGTGAC------TACCATTTACAGCAA
gi|146192 : ATTAAC-GCTTCAAAGAGCGATAACCTATATCAC-CAACTTT-GTCATCAGTAGCGGTTGTAAC------TACCATTTACAGCAA
gi|146193 : ATTTAC-GTTTCAAACAGTGATACTTAAAATCAC-CAACTTTTGTAATGTGTAGCGGTTGTAAC------TACCATTTACAGCAA
gi|146194 : ATTTAC-GTTTCAAACGGCGGTACCCTAAATCAC-CAATTTC-GCAATTAGTTGCGATTGTAAT------TATCATTTACAGCAA
gi|146195 : ATTAAT-GTTTCAAAC-GCGATACTCTAAATCAT-CAAGTTA-GTAATTAGTAGCGGTTGTAAC------TACCATTTACAGAAA
gi|146196 : ATCAAA-GTTTCAATTAGCAATACCCTAAATCAC-CAATTTT-GCAATTAGTAGCGGTTGTAAC------TTCCATTTA
gi|146197 : ATAAAC-GTTTCAAACAGCGATACCCGAACTCAC-CATATAT-GCAATTATTAACGGTTGTAAC------TATCATTTACAGCAA
gi|146198 : ATAAAC-GTTTCAAACAGCGGCACCCCGAATCCC-AAACTTT-GCAATTAGTAGCGTTTGTAAC------TACATTTTACAGTAA
gi|146199 : ATTAAT-GCTTCAAACTTCGATACCCTAAATCA-------------ATAAGTAGCGGTTGTAAC------TACCATTTACAGCAA
gi|146200 : ACTAAC-ATTTCAAACAGCGACACCCCACAT-ACACAACTTT-GGAATAAGTAGCGGTTGTAACTACATGTACCTTTTGCAGCAA
gi|146201 : ATTAAT-GCTTCAAAAATCGATACCCTAAATCAA-CA------GCAATTTTTAGCGGTTGTAAA------TACCATTAACAGCAA
gi|146202 : TTAAC-ATTTCAAACAACGATACCCCAAATCAC-AAACTTT-GCAATTAGTAACAGTTGTAAC------CACCATTTTCAGCAA
gi|146203 : TAAC-ATTTCAAACAGCGACACTCCAAATCAC-CAAC--T-GCAATAAGTAGCGGGTGTAAC------TACCATTTGCAGCA
gi|146204 : TAAT-GTTTCAAACAGCGTAACCCTAAATAAC-TAACTTT-GCAATTAGTAGCGGGTGTAAC------TACCATTTAC
gi|146205 : TAACCGCTTCAAAAAGCGATACCCAAGATCAA-CAACTCT-GCAGTTAATAACGGTTGTAAC------TACCATTTTCAGCAA
blockSeqs : C A T G TACATG
blockSeqs : . . . C .
blockSeqs : . . . G .
blockSeqs : . . . T .
blockSeqs : . . . T .
blockSeqs : . . . T .
blockSeqs : . . . T .
blockSeqs : . . . T .
blockSeqs : . . . A .
blockSeqs : . . . A .
blockSeqs : . . . T .
blockSeqs : . . . T .
blockSeqs : . . . A .
blockSeqs : . . . T .
blockSeqs : . . . T .
blockSeqCons :
originalCons : ATTAAC-GTTTCAAACAGCGATACCCTAAATCAC-CAACTTT-GCAATTAGTAGCGGTTGTAAC------TACCATTTACAGCAA
finalCons : ATTAAC-GTTTCAAACAGCGATACCCTAAATCAC-CAACTTT-GCAATTAGTAGCGGTTGTAAC------TACCATTTACAGCAA
Alignments
lowQualScore : 2 0 2 2 1 777777
lowQualScore : . . . . . ......
lowQualScore : 5 4 5 5 4 222222
consensus : ATTAAC-GTTTCAAACAGCGATACCCTAAATCAC-CAACTTT-GCAATTAGTAGCGGTTGTAAC------TACCATTTACAGCAA
Reference ( family-939 ) : ATTAAC-GTTTCAAACAGCGATACCCTAAATCAC-CAACTTT-GCAATTAGTAGCGGTTGTAAC------TACCATTTACAGCAA
gi|146190 : ATTAAG-GTTTCAAACAGAGATACCCTAAATCAC-AAACTTT-GCAATAAGTAGCAGTTGTAAC------TACCATTTACAGCAA
gi|146191 : ATTAAC-ATTTAAAACAACGATACCTCAAATCAC-CAACATT-GCAATGAGTAGCGGTTGTGAC------TACCATTTACAGCAA
gi|146192 : ATTAAC-GCTTCAAAGAGCGATAACCTATATCAC-CAACTTT-GTCATCAGTAGCGGTTGTAAC------TACCATTTACAGCAA
gi|146193 : ATTTAC-GTTTCAAACAGTGATACTTAAAATCAC-CAACTTTTGTAATGTGTAGCGGTTGTAAC------TACCATTTACAGCAA
gi|146194 : ATTTAC-GTTTCAAACGGCGGTACCCTAAATCAC-CAATTTC-GCAATTAGTTGCGATTGTAAT------TATCATTTACAGCAA
gi|146195 : ATTAAT-GTTTCAAAC-GCGATACTCTAAATCAT-CAAGTTA-GTAATTAGTAGCGGTTGTAAC------TACCATTTACAGAAA
gi|146196 : ATCAAA-GTTTCAATTAGCAATACCCTAAATCAC-CAATTTT-GCAATTAGTAGCGGTTGTAAC------TTCCATTTA
gi|146197 : ATAAAC-GTTTCAAACAGCGATACCCGAACTCAC-CATATAT-GCAATTATTAACGGTTGTAAC------TATCATTTACAGCAA
gi|146198 : ATAAAC-GTTTCAAACAGCGGCACCCCGAATCCC-AAACTTT-GCAATTAGTAGCGTTTGTAAC------TACATTTTACAGTAA
gi|146199 : ATTAAT-GCTTCAAACTTCGATACCCTAAATCA-------------ATAAGTAGCGGTTGTAAC------TACCATTTACAGCAA
gi|146200 : ACTAAC-ATTTCAAACAGCGACACCCCACAT-ACACAACTTT-GGAATAAGTAGCGGTTGTAACTACATGTACCTTTTGCAGCAA
gi|146201 : ATTAAT-GCTTCAAAAATCGATACCCTAAATCAA-CA------GCAATTTTTAGCGGTTGTAAA------TACCATTAACAGCAA
gi|146202 : TTAAC-ATTTCAAACAACGATACCCCAAATCAC-AAACTTT-GCAATTAGTAACAGTTGTAAC------CACCATTTTCAGCAA
gi|146203 : TAAC-ATTTCAAACAGCGACACTCCAAATCAC-CAAC--T-GCAATAAGTAGCGGGTGTAAC------TACCATTTGCAGCA
gi|146204 : TAAT-GTTTCAAACAGCGTAACCCTAAATAAC-TAACTTT-GCAATTAGTAGCGGGTGTAAC------TACCATTTAC
gi|146205 : TAACCGCTTCAAAAAGCGATACCCAAGATCAA-CAACTCT-GCAGTTAATAACGGTTGTAAC------TACCATTTTCAGCAA