lowQualScore : 1 11 333333333 11111 111111 111 11 11111111 111111 11 2222222 1111 1 1111 222222222222 1111111
lowQualScore : 77 2 0 3 3 7 77 777777777 0 1 1 1 66666 3 66 5 3 666666 1 6 6 2 1 6 6 66 6 6 99 000 6 2 11 1 66 6 1 5 5 33 5 888 5 66666666 66666 1 1 4 888888 7 2 55 7777777 777 7 5555 3 0 1 6 5 66 8888 222222222222 6 6 8888888 77 7 9 3 888 6 0 1
lowQualScore : .. . . . . . .. ......... . . . . ..... . .. . . ...... . . . . . . . .. . . .. ... . . .. . .. . . . . .. . ... . ........ ..... . . . ...... . . .. ....... ... . .... . . . . . .. .... ............ . . ....... .. . . . ... . . .
lowQualScore : 33 2 3 3 3 3 88 000000000 3 5 0 0 77777 7 22 2 3 777777 0 7 7 2 0 7 7 77 7 7 22 222 4 1 22 2 99 1 4 0 0 66 0 888 0 55555555 11111 4 0 5 555555 6 5 00 0000000 888 0 5555 3 7 7 7 0 66 2222 000000000000 3 2 7777777 44 8 5 5 000 2 2 5
consensus : AGTAAGCGATTTT-ATTCAAAGATGGATAANTAATNATCCTAGT-ACAACTTGGNCACAATTGAAAAATGGACTTG----CAACGCGATACGCTGAGGTAATAGATTCTCATCATTCGTTAATGCTACTGG-----GNACANTTTTGCAAAAANCGAATGAAANCGTACAA--A-A-TTATGCAG-AAAGATT-GCTNGATTTGGGTCAAGATGCATTCGAAGAATATCA-GGGAGA-TTTACAATTTATT-G-AAAA--AAT--GTTGGTTGGNTATTTCGTNAATGGGTTGGCGTA--TGATTATATGAAAATG-A-GGTTAATGAG-AGAAAA---T-C-----A--CATAACTCTCCAAGCAGCGGTNA-AT--NCGGCCATGANNGAACAAAATCTTA--GG-AAAAA---ACTAG----AA-TTAAAAAC-AGGTCAAAATTCA-GGAAAT--GATTTTCANAA--GAGAAANCAGATAAANTCT-CT---AAATGGCAAGGAAAACCAGGTTATCAGTAAAAGATCGANAGGTTACAAACG-AAG-CAATGCTCAAGGCAAAA
Reference ( gi|17213 ) : AGTAAGCGATTTC-ATTCAAAGATGGATAATTAATAATCCTAGT-ACAACTTGGTTACAATTGAAAAATGGACTTA----CAAAGCAATACGCTGAGGTAATAGATTCTCATCATTCGTTAATGTTACTGG-----GTACAATTTTGCAAAAACCAAATGAAAATGTACAA--A-A-TTATGCAG-AAAGATT-GCTAGATTTGGGTCAAGATGCATTCAAAGAATATCA-GGGAGA-TTTACAATTTATT-G-AAAA--AAT--GTTGGTTGGTTATTTCATAAATGGATTGTTGTA--TGATTATATGAAAATG-A-GGTTAATGAG-AGAAAA---T-C-----A--CATAACTCTCCAAGCAGCAGTCA-AT--TCGGCCATGACAGAACAAAATCTTA--GG-AAAAA---ATTAG----AA-TTAAAAAC-AGGTCAAAATGCA-AGAAAT--ATTTTTCAAAA--GAAAAATCAGATGAAATTG-CT---AAATGATAATGAAAACCAGGTTATCAGTAAAAGATCAACAGGTTACAAACA-AAG-CAATGCTCAAGGCAAAA
gi|17214 : AGTAAGCGATTTC-ATTCAAAGATGGATAATTAATAATCCTAGT-ACAACTTGGTTACAATTGAAAAATGGACTTA----CAAATCAATACGCTGAGGTAATAGATTCTCATCATTCGTTAATGTTACTTG-----GTACAATTTTGCAAAAACCAAATGAAAATGTACAA--A-A-TTATGCAG-AAAGATT-GCTAGATTTGAGTCAAGATGCATTCAAAGAATATCA-GGGAGA-TTTACAATTTATT-G-AAAA--AAA--GTTGGTTGGTTATTTCATAAATGGATTGTTGTA--TGATTATATGAAAATG-A-GGTTAATGAG-AGAAAA---T-C-----A--CATAACTCTCCAAGCAGCAGTCA-AT--TCGGTCATGACAGAACAAAATCTTA--GA-AAAAC---ATTAG----AA-TTAAAAAC-AGGTCAAAATTCA-AGAAAT--AAGTTTCAAAA--GAGAAATCAGATGAAATTG-CT---AAATGATTATGAAAACCAGGTTATCAGTAAAAGATCCACAGGTTACAAACA-AAG-CAATGCTCGAGGCAAAA
gi|17215 : AGTAAGCGATTTT-ATTCAAAGATGGATAATTAATAATCCTAGT-AAAACTTGGTCACAGTTGAAAAATTGACTTG----TAACGCAATACGCTTAGGTAAAAGATTCTTATCATTCGTTAATGCTTCTGG-----GTACATTTTTGCAAAAAACAAATGAAAATGTACAA--A-A-TTATGCAG-AAAGATT-GCTAGATTTGGGTCAAGATGCATTCAAAGAATATCA-GAGAGA-TTTACAATTTATT-G-AAAA--AAT--GTTGGTTGGATATTTCATAAATGGGTTGGTGTA--TGATTATATGAAAATG-A-GGTTAATGAG-AGAATA---T-C-----A--CATTACTCTCCAATCAGCAGTAA-AT--TCGGCCATGATAGAACAAAATCTTAGGGG-AAAAA---A--GG----AA-TTAAAAAC-AGGTCAAAATTCA-AGAAAT--AATTTTCAATA--AAGAAATCAGATGAATTTT-CT---AAATGGCAATGAAAACCAGGTTACCAGTAAAAGATCCACAGGTTACAAACA-AAG-CAATGCTCAAGGTAAAA
gi|17216 : AGTAAGCGATTTC-ATTCAAAGATGGATAACTAATTATCCTAGT-ACAACTTGGTCACAATTGAAAAATGGGCTTG----CAACGCAATACGCTGAGGTAATAGATAATCATCATTCGTTAATGCTACTGGGTACTGTACATTTTTGCAAAAACCAAATGAAAATGTACAA--A-A-TTATGCAG-AAAGATT-GCTAGATTTGGGTCAAGATGCATTCAAAGAATATTA-CGAAAA-TTTACAATTTATT-GAAAAA--AAT--GTTGGTTTGATATTTGATAAATGGGTTTGGGTA--TGATTATATTAAAATG-A-TGTTAATGAG-AGAAAA---T-T-----A--CATAACTCTCCAAGCAGCAGTCA-AT--TCGGCCATGATACAACAAAATCT---------AAA---ATAAG----AA-TTAAAAAC-AGGTCAAAATTCA-ACAAAT--AATTTTCTAAA--GAGAAATCAGATGAATTTT-CT---AAATGGCAATGAAAACCAGGTTGTCAGTAAAAGATACACAGGTTACAAACA-AAG-CAATGCTCAAAGTAAAA
gi|17217 : AGTTAGCGATTTTTATTCACAGATGGATAATTGATAATCCTAGT-AAAACTTGGGCACAAATGAAATATGAACTTG----AAACGCGATATGCCGAGGTAATATATTTCCACCATTCATTAATGTTACTGG-----GGAAGATTTTGCAAAAGACAAATGAAATTGTACAA--A-AACTATGCAG-AAAGATT-ACTGGATTTGGGTTTAGATGCGTTCAAAGAATATCA-GGGCGA-TTTATAATTTATT-G-AGCA--GAT--GTTAGTTAGATATTTCATAAATGGATTAGCGTA--TGATTATCTAAACATG-A-GGTTAATGAC-AGAATA---T-C-----A--CACCACTCTTCAAACAGCCGTTA-CA--CCCACCATGACCGAGCAAAATTTTA--GG-AAAAA---AATAG----AA-TT---AAC-AAGTCAGAATTGG-GGAAAT--GATTTTCATAA--GAGACATCACATAAATTCT-CT---ATATGGCAAGGAAAACAAGATTATCAATAAAAGATCGACATGTTACAATGG-AAG-CAAGGCTCATGGTAAA
gi|17218 : GTAAGTGATTTT-GTACAGAGATATCTAAATGATCATCCAAATGACA-CTTGGG-ATAATTTCAAAATAGAATTAGCGTCA---CAATTTGCTGAAATTACTGACTCTCGGCATGCATTTATGCTACTTA-----GAACCGTTAAACAAAAAATGTCTGAACCCGTGCAA------TTATATTGTGAACATTTGCTTGCTCTAGCGGAGGAGGCATTTGAAGGACATCATGGGGAA-TTGGCAACA-ATC-G-AAAGGCAAT----TGGTTGGCTTCTTTGTTGATAGGTTAGCACA--TGACTATCTTAAAATG-A-AGATTATGAG-AGAAAA---TCC-----AGCCATA---TTACAAGCTGCTGTGAGAA--GC-GCGATGAATGAACAACATCT--------AAGA---ACTAGGTTCAATTTAAGATT-AGGTAAAGA
gi|17219 : GTAAGTGATTTT-GTACAGAGATATCTAAATTTTCATCCAAATGACA-CTTGGG-ATAATTTCAAAATAGAATTAGCGTCA---CGATTTGCTGAAATTACTGACTCTTAGCATGCATTTATGCTACTAA-----GAACCGTTAAACAAAAATTGTCTGAACCCGTGCTATCATA-TTGTG----AACGTTT-GCTTGCTCTAGCGGAAGAGGCATTTGTAGGACATCA-AGGGGAATTGGCAAC--ACTCG-AAAA--AAACAATTGGTCGGCTTCTTTGTTAATGGGTT--TGCACATGACTATCTTAAAATG-AAGGTTA-TCAG-AGAAAA---T-CCAGCCA--CAT-----TACAAGCTGCGGTGAGAA--GCG-CGATGAATGAACAAAATCT--------AAGA---ACTAGGTTCAA-TTTAAGACTAGGTAAAAA
gi|17220 : TTGGTTATTTCATTGACGGACTGTTGAA--TGACTACATGAAAATGAA-GGTT-ATGCG-AGATAACCCT-C-----A-----AACGCTCCAAGCGGCGGTAACAT--GCGTCACTAAT-GAACAAAATATTA--GA-AAACACATACTAG---------AGAAACTAGGCCACAACCCATTGAAGTCGATCAT--AATA--GGAAA--CAGGTGAA
gi|17221 : ATTGCTAAA--TGATTAT--GAAAACC-A-GGTTA-TCAGTAAAAGA---T-C--------CACAGGT-TACAAACAA-AG-CA-ATGCTCG---------------------A--GGCAAAAA---GTTAA----GA-TCAAA-------TCAAAATTCA-GGAAAT--GATTTTCATAA--TAGACCACAGATAAACTTT-CA---AAATGGCAAGGAAATTCAGGTTATCAGTAAAAGATCGAAAGGTTACAAAGG-AAA-TCATGCTCAAGGCAAA
gi|17223 : AA---AGTAA----AA-GTTAAGAT-AAGTCAAAATTCT-GGAAAT--GATTTTCATAA--TAGACAACAGATAAACTCT-CA---AAATGGCAAGGGAAACCAGGTCATCAGTAAAAGATCGAAAGGTTACTAAAG-AAG-TCATGCTCAAGGCAAA
gi|17224 : AA----AG-TTAAGATC-AAGTCAAAATTCA-GGAAAT--GATTTTCATAA--TAGACCACAGATAAACTCT-CA---AAATGGCAAGGAAAATCAGATTATCAGTAAAAGATCGAAAGGTTACAAAAG-AAG-TCATGCTCAAGGCAAA
gi|17225 : AA----AG-TTAACATC-AAGTCAAAATTCA-GGAAAT--GATTTTCATAATTGACCA--CAGAT-AAACC--CTTA-AAATGGCAAGGAAAATCAGGTTATCAGTAAAAGATCGAAAGGTTAAAAAAT-AAG-TCATGCTCAAGGCAAA
gi|17222 : -TTGAGATC-AAGTCAAAATTCA-GGAAAT--AGAT--CA------------CAGAT-AAACT--CTCAAAAATGGCAAGGAAAATCAGATTATCAGTAAAAGGTCGAAAGGTTAC-AACAGAAG-TCACACTCAAGGCAAA
gi|17226 : gaataaaatttacttattatatacaaagacttgCAGATAAACTCT-CA---AAATGGCAAGGAAAATCAGGTTATCAGTAAAAGATCGAAATGTTACAAA-A-GAGTCAA-GCTCAAGGCAAA
gi|17227 : tttcataatagaccaCAGATAAACTCT-CA---AAATGGCAAGGAAATTCAGGTTATCAGTAAAAGATCGAAATGTTACAAA-A-GAGTCAA-GCTCAAGGCAAA
gi|17228 : tttcataatagaccaAAATTTTCT---TAATGGCAAACAAAACCAGGTTATCAGTAAAAGATCCACAGGTTACAAACA-AAG-TAATGCTCAAGGCAAAA
gi|17221 : ATTG-CT---AAATGATTATGAAAACCAGGTTATCAGTAAAAGATCCACAGGTTACAAACA-AAG-CAATGCTCGAGGCAAAA
Alignments
lowQualScore : 1 1 11111 111111 11111111 1111 222222222222 1111111
lowQualScore : 5 1 1 1 5 99 1 1 44444 1 1 1 1 22 111111 5 5 1 1 5 5 33 5 5 77 77 1 2 1 0 1 4 0 4 4 1 4 777 4 33333333 22 0 0 5 2 4444 6 22 777 888888888888 666 8 4444444 1 6 3 7 4 6 999 1 5 3 1 5 0 1
lowQualScore : . . . . . .. . . ..... . . . . .. ...... . . . . . . .. . . .. .. . . . . . . . . . . . ... . ........ .. . . . . .... . .. ... ............ ... . ....... . . . . . . ... . . . . . . .
lowQualScore : 7 0 0 4 0 99 4 4 33333 0 0 0 4 44 777777 7 7 0 4 7 7 11 7 7 99 99 0 0 0 2 1 4 1 4 4 9 4 888 4 77777777 88 1 1 4 6 7777 7 00 000 000000000000 444 0 7777777 0 2 6 3 0 6 999 0 0 1 0 4 2 5
consensus : AGTAAGCGATTTC-GTTCAAAGATGGATAATTAATAATCCTAGT-ACAACTTGGTCACAATTGAAAAATGGACTT-GCAACGCGATACGCTGAGGTAATAGATTCTCATCATTCGTTAATGCTACTGG-----GTACANTTTTGCAAAAANCGAATGAAAACGTACAA--A-A-TTATGCAG-AAAGATT-GCTAGATTTGGGTCAAGATGCATTCGAAGAATATCA-GGGAGA-TTTACAATTTATT-G-AAAA--AAT--GTTGGTTGGNTATTTCGTAAATGGGTTGGCGTATGATTATATGAAAATG-A-GGTTAATGAG-AGAAAA---T-C-----A--CATAACTCTCCAAGCAGCGGTNA-ATNCGGCCATGANNGAACAAAAT---CTTA--GGA-----AAAA---ACTAG----AA-TTAAAAAC-AGGTCAAAATTCA-GGAAAT-GATTTTCATAATAGACAACAGATAAACTCTCNAAA-TGGCAAGGAAAACCAGGTTATCAGTAAAAGATCGANAGGTTACAAANGAAGCAATGCTCAAGGCAAAA
Reference ( family-937 ) : AGTAAGCGATTTT-ATTCAAAGATGGATAANTAATNATCCTAGT-ACAACTTGGNCACAATTGAAAAATGGACTT-GCAACGCGATACGCTGAGGTAATAGATTCTCATCATTCGTTAATGCTACTGG-----GNACANTTTTGCAAAAANCGAATGAAANCGTACAA--A-A-TTATGCAG-AAAGATT-GCTNGATTTGGGTCAAGATGCATTCGAAGAATATCA-GGGAGA-TTTACAATTTATT-G-AAAA--AAT--GTTGGTTGGNTATTTCGTNAATGGGTTGGCGTATGATTATATGAAAATG-A-GGTTAATGAG-AGAAAA---T-C-----A--CATAACTCTCCAAGCAGCGGTNA-ATNCGGCCATGANNGAACAAAAT---CTTA--GGA-----AAAA---ACTAG----AA-TTAAAAAC-AGGTCAAAATTCA-GGAAAT-GATTTTCANAAGAGAAANCAGATAAANTCTCTAAA-TGGCAAGGAAAACCAGGTTATCAGTAAAAGATCGANAGGTTACAAACGAAGCAATGCTCAAGGCAAAA
gi|17213 : AGTAAGCGATTTC-ATTCAAAGATGGATAATTAATAATCCTAGT-ACAACTTGGTTACAATTGAAAAATGGACTT-ACAAAGCAATACGCTGAGGTAATAGATTCTCATCATTCGTTAATGTTACTGG-----GTACAATTTTGCAAAAACCAAATGAAAATGTACAA--A-A-TTATGCAG-AAAGATT-GCTAGATTTGGGTCAAGATGCATTCAAAGAATATCA-GGGAGA-TTTACAATTTATT-G-AAAA--AAT--GTTGGTTGGTTATTTCATAAATGGATTGTTGTATGATTATATGAAAATG-A-GGTTAATGAG-AGAAAA---T-C-----A--CATAACTCTCCAAGCAGCAGTCA-ATTCGGCCATGACAGAACAAAAT---CTTA--GGA-----AAAA---ATTAG----AA-TTAAAAAC-AGGTCAAAATGCA-AGAAAT-ATTTTTCAAAAGAAAAATCAGATGAAATTGCTAAA-TGATAATGAAAACCAGGTTATCAGTAAAAGATCAACAGGTTACAAACAAAGCAATGCTCAAGGCAAAA
gi|17214 : AGTAAGCGATTTC-ATTCAAAGATGGATAATTAATAATCCTAGT-ACAACTTGGTTACAATTGAAAAATGGACTT-ACAAATCAATACGCTGAGGTAATAGATTCTCATCATTCGTTAATGTTACTTG-----GTACAATTTTGCAAAAACCAAATGAAAATGTACAA--A-A-TTATGCAG-AAAGATT-GCTAGATTTGAGTCAAGATGCATTCAAAGAATATCA-GGGAGA-TTTACAATTTATT-G-AAAA--AAA--GTTGGTTGGTTATTTCATAAATGGATTGTTGTATGATTATATGAAAATG-A-GGTTAATGAG-AGAAAA---T-C-----A--CATAACTCTCCAAGCAGCAGTCA-ATTCGGTCATGACAGAACAAAAT---CTTA--GAA-----AAAC---ATTAG----AA-TTAAAAAC-AGGTCAAAATTCA-AGAAAT-AAGTTTCAAAAGAGAAATCAGATGAAATTGCTAAA-TGATTATGAAAACCAGGTTATCAGTAAAAGATCCACAGGTTACAAACAAAGCAATGCTCGAGGCAAAA
gi|17215 : AGTAAGCGATTTT-ATTCAAAGATGGATAATTAATAATCCTAGT-AAAACTTGGTCACAGTTGAAAAATTGACTT-GTAACGCAATACGCTTAGGTAAAAGATTCTTATCATTCGTTAATGCTTCTGG-----GTACATTTTTGCAAAAAACAAATGAAAATGTACAA--A-A-TTATGCAG-AAAGATT-GCTAGATTTGGGTCAAGATGCATTCAAAGAATATCA-GAGAGA-TTTACAATTTATT-G-AAAA--AAT--GTTGGTTGGATATTTCATAAATGGGTTGGTGTATGATTATATGAAAATG-A-GGTTAATGAG-AGAATA---T-C-----A--CATTACTCTCCAATCAGCAGTAA-ATTCGGCCATGATAGAACAAAAT---CTTAGGGGA-----AAAA---A--GG----AA-TTAAAAAC-AGGTCAAAATTCA-AGAAAT-AATTTTCAATAAAGAAATCAGATGAATTTTCTAAA-TGGCAATGAAAACCAGGTTACCAGTAAAAGATCCACAGGTTACAAACAAAGCAATGCTCAAGGTAAAA
gi|17216 : AGTAAGCGATTTC-ATTCAAAGATGGATAACTAATTATCCTAGT-ACAACTTGGTCACAATTGAAAAATGGGCTT-GCAACGCAATACGCTGAGGTAATAGATAATCATCATTCGTTAATGCTACTGGGTACTGTACATTTTTGCAAAAACCAAATGAAAATGTACAA--A-A-TTATGCAG-AAAGATT-GCTAGATTTGGGTCAAGATGCATTCAAAGAATATTA-CGAAAA-TTTACAATTTATT-GAAAAA--AAT--GTTGGTTTGATATTTGATAAATGGGTTTGGGTATGATTATATTAAAATG-A-TGTTAATGAG-AGAAAA---T-T-----A--CATAACTCTCCAAGCAGCAGTCA-ATTCGGCCATGATACAACAAAAT---CT-------------AAA---ATAAG----AA-TTAAAAAC-AGGTCAAAATTCA-ACAAAT-AATTTTCTAAAGAGAAATCAGATGAATTTTCTAAA-TGGCAATGAAAACCAGGTTGTCAGTAAAAGATACACAGGTTACAAACAAAGCAATGCTCAAAGTAAAA
gi|17217 : AGTTAGCGATTTTTATTCACAGATGGATAATTGATAATCCTAGT-AAAACTTGGGCACAAATGAAATATGAACTT-GAAACGCGATATGCCGAGGTAATATATTTCCACCATTCATTAATGTTACTGG-----GGAAGATTTTGCAAAAGACAAATGAAATTGTACAA--A-AACTATGCAG-AAAGATT-ACTGGATTTGGGTTTAGATGCGTTCAAAGAATATCA-GGGCGA-TTTATAATTTATT-G-AGCA--GAT--GTTAGTTAGATATTTCATAAATGGATTAGCGTATGATTATCTAAACATG-A-GGTTAATGAC-AGAATA---T-C-----A--CACCACTCTTCAAACAGCCGTTA-CACCCACCATGACCGAGCAAAAT---TTTA--GGA-----AAAA---AATAG----AA-TT---AAC-AAGTCAGAATTGG-GGAAAT-GATTTTCATAAGAGACATCACATAAATTCTCTATA-TGGCAAGGAAAACAAGATTATCAATAAAAGATCGACATGTTACAATGGAAGCAAGGCTCATGGTAAA
gi|17218 : GTAAGTGATTTT-GTACAGAGATATCTAAATGATCATCCAAATGACA-CTTGGG-ATAATTTCAAAATAGAATTAGCGTCACAATTTGCTGAAATTACTGACTCTCGGCATGCATTTATGCTACTTA-----GAACCGTTAAACAAAAAATGTCTGAACCCGTGCAA------TTATATTGTGAACATTTGCTTGCTCTAGCGGAGGAGGCATTTGAAGGACATCATGGGGAA-TTGGCAACA-ATC-G-AAAGGCAAT----TGGTTGGCTTCTTTGTTGATAGGTTAGCACATGACTATCTTAAAATG-A-AGATTATGAG-AGAAAA---TCC-----AGCCATA---TTACAAGCTGCTGTGAGAAGC-GCGATGAATGAACAACAT---CT------------AAGA---ACTAGGTTCAATTTAAGATT-AGGTAAAGA
gi|17219 : GTAAGTGATTTT-GTACAGAGATATCTAAATTTTCATCCAAATGACA-CTTGGG-ATAATTTCAAAATAGAATTAGCGTCACGATTTGCTGAAATTACTGACTCTTAGCATGCATTTATGCTACTAA-----GAACCGTTAAACAAAAATTGTCTGAACCCGTGCTATCATA-TTGTG----AACGTTT-GCTTGCTCTAGCGGAAGAGGCATTTGTAGGACATCA-AGGGGAATTGGCAAC--ACTCG-AAAA--AAACAATTGGTCGGCTTCTTTGTTAATGGGTTTGCACATGACTATCTTAAAATG-AAGGTTA-TCAG-AGAAAA---T-CCAGCCA--CAT-----TACAAGCTGCGGTGAGAAGCG-CGATGAATGAACAAAAT---CT------------AAGA---ACTAGGTTCAA-TTTAAGACTAGGTAAAAA
gi|17220 : TTGGTTATTTCATTGACGGACTGTTGAATGACTACATGAAAATGAA-GGTT-ATGCG-AGATAACCCT-C-----A-----AACGCTCCAAGCGGCGGTAACATGC-GTCACTAATGAACAAAAT---ATTA--GAA-----AACACATACTAG---------AGAAACTAGGCCACAACCCATTGAAGTCGA---TCATAATAGGAAACAGGTGAA
gi|17221 : ATGATTAT--GAAAACC-A-GGTTA-TCAGTAAAAGA---T-C--------CACAGGT-TACAAACA------A-A----GCAATGCTCGA----------------GGC-----AAAA---A---------G-TTAAGATC-AAATCAAAATTCA-GGAAAT-GATTTTCATAATAGACCACAGATAAACTTTCAAAA-TGGCAAGGAAATTCAGGTTATCAGTAAAAGATCGAAAGGTTACAAAGGAAATCATGCTCAAGGCAAA
gi|17222 : attgctaaGAATAAAATTTACTTA--TTATATACAAAG---ACTTG-------TTGAGATC-AAGTCAAAATTCA-GGAAATAGAT---CA----------CAGATAAACTCTCAAAAATGGCAAGGAAAATCAGATTATCAGTAAAAGGTCGAAAGGTTACAACAGAAGTCACACTCAAGGCAAA
gi|17223 : AA---AGTAA----AA-GTTAAGAT-AAGTCAAAATTCT-GGAAAT-GATTTTCATAATAGACAACAGATAAACTCTCAAAA-TGGCAAGGGAAACCAGGTCATCAGTAAAAGATCGAAAGGTTACTAAAGAAGTCATGCTCAAGGCAAA
gi|17224 : AA----AG-TTAAGATC-AAGTCAAAATTCA-GGAAAT-GATTTTCATAATAGACCACAGATAAACTCTCAAAA-TGGCAAGGAAAATCAGATTATCAGTAAAAGATCGAAAGGTTACAAAAGAAGTCATGCTCAAGGCAAA
gi|17225 : AA----AG-TTAACATC-AAGTCAAAATTCA-GGAAAT-GATTTTCATAATTGACCACAGATAAACCCTTAAAA-TGGCAAGGAAAATCAGGTTATCAGTAAAAGATCGAAAGGTTAAAAAATAAGTCATGCTCAAGGCAAA
gi|17226 : TTTCATAATAGACCACAGATAAACTCTCAAAA-TGGCAAGGAAAATCAGGTTATCAGTAAAAGATCGAAATGTTACAAAAGAGTCAA-GCTCAAGGCAAA
gi|17227 : TTTCATAATAGACCACAGATAAACTCTCAAAA-TGGCAAGGAAATTCAGGTTATCAGTAAAAGATCGAAATGTTACAAAAGAGTCAA-GCTCAAGGCAAA
gi|17228 : AAATTTTCTTAA-TGGCAAACAAAACCAGGTTATCAGTAAAAGATCCACAGGTTACAAACAAAGTAATGCTCAAGGCAAAA
Alignments
lowQualScore : 1 11 1 11111 111111 11111111 1111 222222222222 1111111
lowQualScore : 77 0 1 1 5 00 1 1 44444 1 1 1 1 33 111111 5 5 0 1 5 5 33 5 5 77 77 1 2 0 0 1 4 0 4 4 1 4 777 4 33333333 22 0 0 5 2 4444 6 22 777 888888888888 666 8 4444444 1 6 3 3 3 4 66666 44 1 1 0 1
lowQualScore : .. . . . . .. . . ..... . . . . .. ...... . . . . . . .. . . .. .. . . . . . . . . . . . ... . ........ .. . . . . .... . .. ... ............ ... . ....... . . . . . . ..... .. . . . .
lowQualScore : 11 6 6 4 0 11 4 4 33333 9 0 0 4 00 777777 7 7 6 4 7 7 11 7 7 99 99 0 0 8 2 1 4 1 4 4 9 4 888 4 77777777 88 1 1 4 6 7777 7 00 000 000000000000 444 0 7777777 0 2 6 6 1 1 22222 11 0 0 2 5
consensus : AGTAAGCGATTTC-GTTCAAAGATGGATAATTAATAATCCTAGT-ACAACTTGGTCACAATTGAAAAATGGACTT-GCAACGCGATACGCTGAGGTAATAGATTCTCATCATTCGTTAATGCTACTGG-----GTACANTTTTGCAAAAANCGAATGAAAACGTACAA--A-A-TTATGCAG-AAAGATT-GCTAGATTTGGGTCAAGATGCATTCGAAGAATATCA-GGGAGA-TTTACAATTTATT-G-AAAA--AAT--GTTGGTTGGNTATTTCGTAAATGGGTTGGCGTATGATTATATGAAAATG-A-GGTTAATGAG-AGAAAA---T-C-----A--CATAACTCTCCAAGCAGCGGTNA-ATNCGGCCATGANNGAACAAAAT---CTTA--GGA-----AAAA---ACTAG----AA-TTAAAAAC-AGGTCAAAATTCA-GGAAAT-GATTTTC-ATAATAGACNA--CAGATAAACTCTC-NAAATGGCAAGGAAAACCAGGTTATCAGTAAAAGATCGANAGGTTACAAANGAAGCAATGCTCAAGGCAAAA
Reference ( family-937 ) : AGTAAGCGATTTC-GTTCAAAGATGGATAATTAATAATCCTAGT-ACAACTTGGTCACAATTGAAAAATGGACTT-GCAACGCGATACGCTGAGGTAATAGATTCTCATCATTCGTTAATGCTACTGG-----GTACANTTTTGCAAAAANCGAATGAAAACGTACAA--A-A-TTATGCAG-AAAGATT-GCTAGATTTGGGTCAAGATGCATTCGAAGAATATCA-GGGAGA-TTTACAATTTATT-G-AAAA--AAT--GTTGGTTGGNTATTTCGTAAATGGGTTGGCGTATGATTATATGAAAATG-A-GGTTAATGAG-AGAAAA---T-C-----A--CATAACTCTCCAAGCAGCGGTNA-ATNCGGCCATGANNGAACAAAAT---CTTA--GGA-----AAAA---ACTAG----AA-TTAAAAAC-AGGTCAAAATTCA-GGAAAT-GATTTTC-ATAATAGACAA--CAGATAAACTCTC-NAAATGGCAAGGAAAACCAGGTTATCAGTAAAAGATCGANAGGTTACAAANGAAGCAATGCTCAAGGCAAAA
gi|17213 : AGTAAGCGATTTC-ATTCAAAGATGGATAATTAATAATCCTAGT-ACAACTTGGTTACAATTGAAAAATGGACTT-ACAAAGCAATACGCTGAGGTAATAGATTCTCATCATTCGTTAATGTTACTGG-----GTACAATTTTGCAAAAACCAAATGAAAATGTACAA--A-A-TTATGCAG-AAAGATT-GCTAGATTTGGGTCAAGATGCATTCAAAGAATATCA-GGGAGA-TTTACAATTTATT-G-AAAA--AAT--GTTGGTTGGTTATTTCATAAATGGATTGTTGTATGATTATATGAAAATG-A-GGTTAATGAG-AGAAAA---T-C-----A--CATAACTCTCCAAGCAGCAGTCA-ATTCGGCCATGACAGAACAAAAT---CTTA--GGA-----AAAA---ATTAG----AA-TTAAAAAC-AGGTCAAAATGCA-AGAAAT-ATTTTTC-AAAAGAAAAAT--CAGATGAAATTGC-TAAATGATAATGAAAACCAGGTTATCAGTAAAAGATCAACAGGTTACAAACAAAGCAATGCTCAAGGCAAAA
gi|17214 : AGTAAGCGATTTC-ATTCAAAGATGGATAATTAATAATCCTAGT-ACAACTTGGTTACAATTGAAAAATGGACTT-ACAAATCAATACGCTGAGGTAATAGATTCTCATCATTCGTTAATGTTACTTG-----GTACAATTTTGCAAAAACCAAATGAAAATGTACAA--A-A-TTATGCAG-AAAGATT-GCTAGATTTGAGTCAAGATGCATTCAAAGAATATCA-GGGAGA-TTTACAATTTATT-G-AAAA--AAA--GTTGGTTGGTTATTTCATAAATGGATTGTTGTATGATTATATGAAAATG-A-GGTTAATGAG-AGAAAA---T-C-----A--CATAACTCTCCAAGCAGCAGTCA-ATTCGGTCATGACAGAACAAAAT---CTTA--GAA-----AAAC---ATTAG----AA-TTAAAAAC-AGGTCAAAATTCA-AGAAAT-AAGTTTC-AAAAGAGAAAT--CAGATGAAATTGC-TAAATGATTATGAAAACCAGGTTATCAGTAAAAGATCCACAGGTTACAAACAAAGCAATGCTCGAGGCAAAA
gi|17215 : AGTAAGCGATTTT-ATTCAAAGATGGATAATTAATAATCCTAGT-AAAACTTGGTCACAGTTGAAAAATTGACTT-GTAACGCAATACGCTTAGGTAAAAGATTCTTATCATTCGTTAATGCTTCTGG-----GTACATTTTTGCAAAAAACAAATGAAAATGTACAA--A-A-TTATGCAG-AAAGATT-GCTAGATTTGGGTCAAGATGCATTCAAAGAATATCA-GAGAGA-TTTACAATTTATT-G-AAAA--AAT--GTTGGTTGGATATTTCATAAATGGGTTGGTGTATGATTATATGAAAATG-A-GGTTAATGAG-AGAATA---T-C-----A--CATTACTCTCCAATCAGCAGTAA-ATTCGGCCATGATAGAACAAAAT---CTTAGGGGA-----AAAA---A--GG----AA-TTAAAAAC-AGGTCAAAATTCA-AGAAAT-AATTTTCAATAA-AGAAAT--CAGATGAATTTTC-TAAATGGCAATGAAAACCAGGTTACCAGTAAAAGATCCACAGGTTACAAACAAAGCAATGCTCAAGGTAAAA
gi|17216 : AGTAAGCGATTTC-ATTCAAAGATGGATAACTAATTATCCTAGT-ACAACTTGGTCACAATTGAAAAATGGGCTT-GCAACGCAATACGCTGAGGTAATAGATAATCATCATTCGTTAATGCTACTGGGTACTGTACATTTTTGCAAAAACCAAATGAAAATGTACAA--A-A-TTATGCAG-AAAGATT-GCTAGATTTGGGTCAAGATGCATTCAAAGAATATTA-CGAAAA-TTTACAATTTATT-GAAAAA--AAT--GTTGGTTTGATATTTGATAAATGGGTTTGGGTATGATTATATTAAAATG-A-TGTTAATGAG-AGAAAA---T-T-----A--CATAACTCTCCAAGCAGCAGTCA-ATTCGGCCATGATACAACAAAAT---CT-------------AAA---ATAAG----AA-TTAAAAAC-AGGTCAAAATTCA-ACAAAT-AATTTTC--TAA-AGAGAAATCAGATGAATTTTC-TAAATGGCAATGAAAACCAGGTTGTCAGTAAAAGATACACAGGTTACAAACAAAGCAATGCTCAAAGTAAAA
gi|17217 : AGTTAGCGATTTTTATTCACAGATGGATAATTGATAATCCTAGT-AAAACTTGGGCACAAATGAAATATGAACTT-GAAACGCGATATGCCGAGGTAATATATTTCCACCATTCATTAATGTTACTGG-----GGAAGATTTTGCAAAAGACAAATGAAATTGTACAA--A-AACTATGCAG-AAAGATT-ACTGGATTTGGGTTTAGATGCGTTCAAAGAATATCA-GGGCGA-TTTATAATTTATT-G-AGCA--GAT--GTTAGTTAGATATTTCATAAATGGATTAGCGTATGATTATCTAAACATG-A-GGTTAATGAC-AGAATA---T-C-----A--CACCACTCTTCAAACAGCCGTTA-CACCCACCATGACCGAGCAAAAT---TTTA--GGA-----AAAA---AATAG----AA-TT---AAC-AAGTCAGAATTGG-GGAAAT-GATTTTC-ATAAGAGACAT--CACATAAATTCTC-TATATGGCAAGGAAAACAAGATTATCAATAAAAGATCGACATGTTACAATGGAAGCAAGGCTCATGGTAAA
gi|17218 : GTAAGTGATTTT-GTACAGAGATATCTAAATGATCATCCAAATGACA-CTTGGG-ATAATTTCAAAATAGAATTAGCGTCACAATTTGCTGAAATTACTGACTCTCGGCATGCATTTATGCTACTTA-----GAACCGTTAAACAAAAAATGTCTGAACCCGTGCAA------TTATATTGTGAACATTTGCTTGCTCTAGCGGAGGAGGCATTTGAAGGACATCATGGGGAA-TTGGCAACA-ATC-G-AAAGGCAAT----TGGTTGGCTTCTTTGTTGATAGGTTAGCACATGACTATCTTAAAATG-A-AGATTATGAG-AGAAAA---TCC-----AGCCATA---TTACAAGCTGCTGTGAGAAGC-GCGATGAATGAACAACAT---CT------------AAGA---ACTAGGTTCAATTTAAGATT-AGGTAAAGA
gi|17219 : GTAAGTGATTTT-GTACAGAGATATCTAAATTTTCATCCAAATGACA-CTTGGG-ATAATTTCAAAATAGAATTAGCGTCACGATTTGCTGAAATTACTGACTCTTAGCATGCATTTATGCTACTAA-----GAACCGTTAAACAAAAATTGTCTGAACCCGTGCTATCATA-TTGTG----AACGTTT-GCTTGCTCTAGCGGAAGAGGCATTTGTAGGACATCA-AGGGGAATTGGCAAC--ACTCG-AAAA--AAACAATTGGTCGGCTTCTTTGTTAATGGGTTTGCACATGACTATCTTAAAATG-AAGGTTA-TCAG-AGAAAA---T-CCAGCCA--CAT-----TACAAGCTGCGGTGAGAAGCG-CGATGAATGAACAAAAT---CT------------AAGA---ACTAGGTTCAA-TTTAAGACTAGGTAAAAA
gi|17220 : TTGGTTATTTCATTGACGGACTGTTGAATGACTACATGAAAATGAA-GGTT-ATGCG-AGATAACCCT-C-----A-----AACGCTCCAAGCGGCGGTAACATGC-GTCACTAATGAACAAAAT---ATTA--GAA-----AACACATACTAG---------AGAAACTAGGCCACAACCCATTGAAGTCGA---TC-ATAATAGGAAA--CAGGTGAA
gi|17221 : ATGATTAT--GAAAACC-A-GGTTA-TCAGTAAAAGA---T-C--------CACAGGT-TACAAACA------A-A----GCAATGCTCGA----------------GGC-----AAAA---A---------G-TTAAGATC-AAATCAAAATTCA-GGAAAT-GATTTTC-ATAATAGACCA--CAGATAAACTTTC-AAAATGGCAAGGAAATTCAGGTTATCAGTAAAAGATCGAAAGGTTACAAAGGAAATCATGCTCAAGGCAAA
gi|17222 : attgctaaGAATAAAATTTACTTA--TTATATACAAAG---ACTTG-------TTGAGATC-AAGTCAAAATTCA-GGA--------------AATAGATCA--CAGATAAACTCTCAAAAATGGCAAGGAAAATCAGATTATCAGTAAAAGGTCGAAAGGTTACAACAGAAGTCACACTCAAGGCAAA
gi|17223 : AA---AGTAA----AA-GTTAAGAT-AAGTCAAAATTCT-GGAAAT-GATTTTC-ATAATAGACAA--CAGATAAACTCTC-AAAATGGCAAGGGAAACCAGGTCATCAGTAAAAGATCGAAAGGTTACTAAAGAAGTCATGCTCAAGGCAAA
gi|17224 : AA----AG-TTAAGATC-AAGTCAAAATTCA-GGAAAT-GATTTTC-ATAATAGACCA--CAGATAAACTCTC-AAAATGGCAAGGAAAATCAGATTATCAGTAAAAGATCGAAAGGTTACAAAAGAAGTCATGCTCAAGGCAAA
gi|17225 : AA----AG-TTAACATC-AAGTCAAAATTCA-GGAAAT-GATTTTC-ATAATTGACCA--CAGATAAACCCTT-AAAATGGCAAGGAAAATCAGGTTATCAGTAAAAGATCGAAAGGTTAAAAAATAAGTCATGCTCAAGGCAAA
gi|17226 : TTTC-ATAATAGACCA--CAGATAAACTCTC-AAAATGGCAAGGAAAATCAGGTTATCAGTAAAAGATCGAAATGTTACAAAAGAGTCAA-GCTCAAGGCAAA
gi|17227 : TTTC-ATAATAGACCA--CAGATAAACTCTC-AAAATGGCAAGGAAATTCAGGTTATCAGTAAAAGATCGAAATGTTACAAAAGAGTCAA-GCTCAAGGCAAA
gi|17228 : AAATTTTC-TTAATGGCAAACAAAACCAGGTTATCAGTAAAAGATCCACAGGTTACAAACAAAGTAATGCTCAAGGCAAAA
Alignments
lowQualScore : 1 11 1 11111 111111 11111111 1111 222222222222 1111111
lowQualScore : 77 0 1 1 5 00 1 1 44444 1 1 1 1 33 111111 5 5 0 1 5 5 33 5 5 77 77 1 2 0 0 1 4 0 4 4 1 4 777 4 33333333 22 0 0 5 2 4444 6 22 777 888888888888 666 8 4444444 1 6 3 3 3 4 55555 44 1 1 0 1
lowQualScore : .. . . . . .. . . ..... . . . . .. ...... . . . . . . .. . . .. .. . . . . . . . . . . . ... . ........ .. . . . . .... . .. ... ............ ... . ....... . . . . . . ..... .. . . . .
lowQualScore : 11 6 6 4 0 11 4 4 33333 9 0 0 4 00 777777 7 7 6 4 7 7 11 7 7 99 99 0 0 8 2 1 4 1 4 4 9 4 888 4 77777777 88 1 1 4 6 7777 7 00 000 000000000000 444 0 7777777 0 2 6 6 1 1 11111 11 0 0 2 5
consensus : AGTAAGCGATTTC-GTTCAAAGATGGATAATTAATAATCCTAGT-ACAACTTGGTCACAATTGAAAAATGGACTT-GCAACGCGATACGCTGAGGTAATAGATTCTCATCATTCGTTAATGCTACTGG-----GTACANTTTTGCAAAAANCGAATGAAAACGTACAA--A-A-TTATGCAG-AAAGATT-GCTAGATTTGGGTCAAGATGCATTCGAAGAATATCA-GGGAGA-TTTACAATTTATT-G-AAAA--AAT--GTTGGTTGGNTATTTCGTAAATGGGTTGGCGTATGATTATATGAAAATG-A-GGTTAATGAG-AGAAAA---T-C-----A--CATAACTCTCCAAGCAGCGGTNA-ATNCGGCCATGANNGAACAAAAT---CTTA--GGA-----AAAA---ACTAG----AA-TTAAAAAC-AGGTCAAAATTCA-GGAAAT-GATTTTC-ATAATAGACNA--CAGATAAACTCTC-NAAATGGCAAGGAAAACCAGGTTATCAGTAAAAGATCGANAGGTTACAAANGAAGCAATGCTCAAGGCAAAA
Reference ( family-937 ) : AGTAAGCGATTTC-GTTCAAAGATGGATAATTAATAATCCTAGT-ACAACTTGGTCACAATTGAAAAATGGACTT-GCAACGCGATACGCTGAGGTAATAGATTCTCATCATTCGTTAATGCTACTGG-----GTACANTTTTGCAAAAANCGAATGAAAACGTACAA--A-A-TTATGCAG-AAAGATT-GCTAGATTTGGGTCAAGATGCATTCGAAGAATATCA-GGGAGA-TTTACAATTTATT-G-AAAA--AAT--GTTGGTTGGNTATTTCGTAAATGGGTTGGCGTATGATTATATGAAAATG-A-GGTTAATGAG-AGAAAA---T-C-----A--CATAACTCTCCAAGCAGCGGTNA-ATNCGGCCATGANNGAACAAAAT---CTTA--GGA-----AAAA---ACTAG----AA-TTAAAAAC-AGGTCAAAATTCA-GGAAAT-GATTTTC-ATAATAGACNA--CAGATAAACTCTC-NAAATGGCAAGGAAAACCAGGTTATCAGTAAAAGATCGANAGGTTACAAANGAAGCAATGCTCAAGGCAAAA
gi|17213 : AGTAAGCGATTTC-ATTCAAAGATGGATAATTAATAATCCTAGT-ACAACTTGGTTACAATTGAAAAATGGACTT-ACAAAGCAATACGCTGAGGTAATAGATTCTCATCATTCGTTAATGTTACTGG-----GTACAATTTTGCAAAAACCAAATGAAAATGTACAA--A-A-TTATGCAG-AAAGATT-GCTAGATTTGGGTCAAGATGCATTCAAAGAATATCA-GGGAGA-TTTACAATTTATT-G-AAAA--AAT--GTTGGTTGGTTATTTCATAAATGGATTGTTGTATGATTATATGAAAATG-A-GGTTAATGAG-AGAAAA---T-C-----A--CATAACTCTCCAAGCAGCAGTCA-ATTCGGCCATGACAGAACAAAAT---CTTA--GGA-----AAAA---ATTAG----AA-TTAAAAAC-AGGTCAAAATGCA-AGAAAT-ATTTTTC-AAAAGAAAAAT--CAGATGAAATTGC-TAAATGATAATGAAAACCAGGTTATCAGTAAAAGATCAACAGGTTACAAACAAAGCAATGCTCAAGGCAAAA
gi|17214 : AGTAAGCGATTTC-ATTCAAAGATGGATAATTAATAATCCTAGT-ACAACTTGGTTACAATTGAAAAATGGACTT-ACAAATCAATACGCTGAGGTAATAGATTCTCATCATTCGTTAATGTTACTTG-----GTACAATTTTGCAAAAACCAAATGAAAATGTACAA--A-A-TTATGCAG-AAAGATT-GCTAGATTTGAGTCAAGATGCATTCAAAGAATATCA-GGGAGA-TTTACAATTTATT-G-AAAA--AAA--GTTGGTTGGTTATTTCATAAATGGATTGTTGTATGATTATATGAAAATG-A-GGTTAATGAG-AGAAAA---T-C-----A--CATAACTCTCCAAGCAGCAGTCA-ATTCGGTCATGACAGAACAAAAT---CTTA--GAA-----AAAC---ATTAG----AA-TTAAAAAC-AGGTCAAAATTCA-AGAAAT-AAGTTTC-AAAAGAGAAAT--CAGATGAAATTGC-TAAATGATTATGAAAACCAGGTTATCAGTAAAAGATCCACAGGTTACAAACAAAGCAATGCTCGAGGCAAAA
gi|17215 : AGTAAGCGATTTT-ATTCAAAGATGGATAATTAATAATCCTAGT-AAAACTTGGTCACAGTTGAAAAATTGACTT-GTAACGCAATACGCTTAGGTAAAAGATTCTTATCATTCGTTAATGCTTCTGG-----GTACATTTTTGCAAAAAACAAATGAAAATGTACAA--A-A-TTATGCAG-AAAGATT-GCTAGATTTGGGTCAAGATGCATTCAAAGAATATCA-GAGAGA-TTTACAATTTATT-G-AAAA--AAT--GTTGGTTGGATATTTCATAAATGGGTTGGTGTATGATTATATGAAAATG-A-GGTTAATGAG-AGAATA---T-C-----A--CATTACTCTCCAATCAGCAGTAA-ATTCGGCCATGATAGAACAAAAT---CTTAGGGGA-----AAAA---A--GG----AA-TTAAAAAC-AGGTCAAAATTCA-AGAAAT-AATTTTCAATAA-AGAAAT--CAGATGAATTTTC-TAAATGGCAATGAAAACCAGGTTACCAGTAAAAGATCCACAGGTTACAAACAAAGCAATGCTCAAGGTAAAA
gi|17216 : AGTAAGCGATTTC-ATTCAAAGATGGATAACTAATTATCCTAGT-ACAACTTGGTCACAATTGAAAAATGGGCTT-GCAACGCAATACGCTGAGGTAATAGATAATCATCATTCGTTAATGCTACTGGGTACTGTACATTTTTGCAAAAACCAAATGAAAATGTACAA--A-A-TTATGCAG-AAAGATT-GCTAGATTTGGGTCAAGATGCATTCAAAGAATATTA-CGAAAA-TTTACAATTTATT-GAAAAA--AAT--GTTGGTTTGATATTTGATAAATGGGTTTGGGTATGATTATATTAAAATG-A-TGTTAATGAG-AGAAAA---T-T-----A--CATAACTCTCCAAGCAGCAGTCA-ATTCGGCCATGATACAACAAAAT---CT-------------AAA---ATAAG----AA-TTAAAAAC-AGGTCAAAATTCA-ACAAAT-AATTTTC--TAA-AGAGAAATCAGATGAATTTTC-TAAATGGCAATGAAAACCAGGTTGTCAGTAAAAGATACACAGGTTACAAACAAAGCAATGCTCAAAGTAAAA
gi|17217 : AGTTAGCGATTTTTATTCACAGATGGATAATTGATAATCCTAGT-AAAACTTGGGCACAAATGAAATATGAACTT-GAAACGCGATATGCCGAGGTAATATATTTCCACCATTCATTAATGTTACTGG-----GGAAGATTTTGCAAAAGACAAATGAAATTGTACAA--A-AACTATGCAG-AAAGATT-ACTGGATTTGGGTTTAGATGCGTTCAAAGAATATCA-GGGCGA-TTTATAATTTATT-G-AGCA--GAT--GTTAGTTAGATATTTCATAAATGGATTAGCGTATGATTATCTAAACATG-A-GGTTAATGAC-AGAATA---T-C-----A--CACCACTCTTCAAACAGCCGTTA-CACCCACCATGACCGAGCAAAAT---TTTA--GGA-----AAAA---AATAG----AA-TT---AAC-AAGTCAGAATTGG-GGAAAT-GATTTTC-ATAAGAGACAT--CACATAAATTCTC-TATATGGCAAGGAAAACAAGATTATCAATAAAAGATCGACATGTTACAATGGAAGCAAGGCTCATGGTAAA
gi|17218 : GTAAGTGATTTT-GTACAGAGATATCTAAATGATCATCCAAATGACA-CTTGGG-ATAATTTCAAAATAGAATTAGCGTCACAATTTGCTGAAATTACTGACTCTCGGCATGCATTTATGCTACTTA-----GAACCGTTAAACAAAAAATGTCTGAACCCGTGCAA------TTATATTGTGAACATTTGCTTGCTCTAGCGGAGGAGGCATTTGAAGGACATCATGGGGAA-TTGGCAACA-ATC-G-AAAGGCAAT----TGGTTGGCTTCTTTGTTGATAGGTTAGCACATGACTATCTTAAAATG-A-AGATTATGAG-AGAAAA---TCC-----AGCCATA---TTACAAGCTGCTGTGAGAAGC-GCGATGAATGAACAACAT---CT------------AAGA---ACTAGGTTCAATTTAAGATT-AGGTAAAGA
gi|17219 : GTAAGTGATTTT-GTACAGAGATATCTAAATTTTCATCCAAATGACA-CTTGGG-ATAATTTCAAAATAGAATTAGCGTCACGATTTGCTGAAATTACTGACTCTTAGCATGCATTTATGCTACTAA-----GAACCGTTAAACAAAAATTGTCTGAACCCGTGCTATCATA-TTGTG----AACGTTT-GCTTGCTCTAGCGGAAGAGGCATTTGTAGGACATCA-AGGGGAATTGGCAAC--ACTCG-AAAA--AAACAATTGGTCGGCTTCTTTGTTAATGGGTTTGCACATGACTATCTTAAAATG-AAGGTTA-TCAG-AGAAAA---T-CCAGCCA--CAT-----TACAAGCTGCGGTGAGAAGCG-CGATGAATGAACAAAAT---CT------------AAGA---ACTAGGTTCAA-TTTAAGACTAGGTAAAAA
gi|17220 : TTGGTTATTTCATTGACGGACTGTTGAATGACTACATGAAAATGAA-GGTT-ATGCG-AGATAACCCT-C-----A-----AACGCTCCAAGCGGCGGTAACATGC-GTCACTAATGAACAAAAT---ATTA--GAA-----AACACATACTAG---------AGAAACTAGGCCACAACCCATTGAAGTCGA---TC-ATAATAGGAAA--CAGGTGAA
gi|17221 : ATGATTAT--GAAAACC-A-GGTTA-TCAGTAAAAGA---T-C--------CACAGGT-TACAAACA------A-A----GCAATGCTCGA----------------GGC-----AAAA---A---------G-TTAAGATC-AAATCAAAATTCA-GGAAAT-GATTTTC-ATAATAGACCA--CAGATAAACTTTC-AAAATGGCAAGGAAATTCAGGTTATCAGTAAAAGATCGAAAGGTTACAAAGGAAATCATGCTCAAGGCAAA
gi|17222 : attgctaaGAATAAAATTTACTTA--TTATATACAAAG---ACTTG-------TTGAGATC-AAGTCAAAATTCA-GGA--------------AATAGATCA--CAGATAAACTCTCAAAAATGGCAAGGAAAATCAGATTATCAGTAAAAGGTCGAAAGGTTACAACAGAAGTCACACTCAAGGCAAA
gi|17223 : AA---AGTAA----AA-GTTAAGAT-AAGTCAAAATTCT-GGAAAT-GATTTTC-ATAATAGACAA--CAGATAAACTCTC-AAAATGGCAAGGGAAACCAGGTCATCAGTAAAAGATCGAAAGGTTACTAAAGAAGTCATGCTCAAGGCAAA
gi|17224 : AA----AG-TTAAGATC-AAGTCAAAATTCA-GGAAAT-GATTTTC-ATAATAGACCA--CAGATAAACTCTC-AAAATGGCAAGGAAAATCAGATTATCAGTAAAAGATCGAAAGGTTACAAAAGAAGTCATGCTCAAGGCAAA
gi|17225 : AA----AG-TTAACATC-AAGTCAAAATTCA-GGAAAT-GATTTTC-ATAATTGACCA--CAGATAAACCCTT-AAAATGGCAAGGAAAATCAGGTTATCAGTAAAAGATCGAAAGGTTAAAAAATAAGTCATGCTCAAGGCAAA
gi|17226 : TTTC-ATAATAGACCA--CAGATAAACTCTC-AAAATGGCAAGGAAAATCAGGTTATCAGTAAAAGATCGAAATGTTACAAAAGAGTCAA-GCTCAAGGCAAA
gi|17227 : TTTC-ATAATAGACCA--CAGATAAACTCTC-AAAATGGCAAGGAAATTCAGGTTATCAGTAAAAGATCGAAATGTTACAAAAGAGTCAA-GCTCAAGGCAAA
gi|17228 : AAATTTTC-TTAATGGCAAACAAAACCAGGTTATCAGTAAAAGATCCACAGGTTACAAACAAAGTAATGCTCAAGGCAAAA
blockSeqs : TA A G A TT A A GTACT T A C A AT TCATA T T A T A TT C A GC CA T A T A A A A T CCC C CAGCCA AA A C GAAG G CA TTA TATTATATAC CAT T GTTCAAT A T T C A G GAAAT AA C C T
blockSeqs : A A G A TC A A . T T A A AT AAA . . A . . TT . . . . A A T A . . A . . . AGC TA A A GAAG G TA . TAGGGGA . T GTTCAA A T . . . G AAT T C C T
blockSeqs : A T . A TC . A . T T C A AT AA . . A . . TT . . . . A A G A . . A . . . A AA A C CATG G TA . TAGAA . A AA A . . . . T AAT T C C T
blockSeqs : A A . A GC . G . G A A A TT AA . . A . . TT . . . . A A C C . . A . . . A CA C T ATT C CC . TAGGA . C AA A . . . . T CAT T C G G
blockSeqs : G C . . G . A . A G A G CC AA . . G . . A . . . . C G C C . . A . . . A AA T G ATT G AT . TAGAA . C AA T . . . . T AAA T A G T
blockSeqs : G C . . G . G . A G T G CC . . . G . . . . . . . C G C C . . A . . . A AG G G ATT . AT . GGC . C AA A . . . . T CCA A A A C
blockSeqs : T A T A . . . . . . A A G A CAC . AT . . . C AA A . . . . T TCA A A A T
blockSeqs : . . . . . . . . . . . A . TC . . . G AG T . . . . T CAA A A A T
blockSeqs : . . . . AG T . . . . T CCA A A A T
blockSeqs : . . G A . . . . T CCA A A A T
blockSeqs : . T . . . CCA A A A .
blockSeqs : . T . . . CCA T C C .
blockSeqCons :
originalCons : AGTAAGCGATTTC-GTTCAAAGATGGATAATTAATAATCCTAGT-ACAACTTGGTCACAATTGAAAAATGGACTT-GCAACGCGATACGCTGAGGTAATAGATTCTCATCATTCGTTAATGCTACTGG-----GTACANTTTTGCAAAAANCGAATGAAAACGTACAA--A-A-TTATGCAG-AAAGATT-GCTAGATTTGGGTCAAGATGCATTCGAAGAATATCA-GGGAGA-TTTACAATTTATT-G-AAAA--AAT--GTTGGTTGGNTATTTCGTAAATGGGTTGGCGTATGATTATATGAAAATG-A-GGTTAATGAG-AGAAAA---T-C-----A--CATAACTCTCCAAGCAGCGGTNA-ATNCGGCCATGANNGAACAAAAT---CTTA--GGA-----AAAA---ACTAG----AA-TTAAAAAC-AGGTCAAAATTCA-GGAAAT-GATTTTC-ATAATAGACNA--CAGATAAACTCTC-NAAATGGCAAGGAAAACCAGGTTATCAGTAAAAGATCGANAGGTTACAAANGAAGCAATGCTCAAGGCAAAA
finalCons : AGTAAGCGATTTC-GTTCAAAGATGGATAATTAATAATCCTAGT-ACAACTTGGTCACAATTGAAAAATGGACTT-GCAACGCGATACGCTGAGGTAATAGATTCTCATCATTCGTTAATGCTACTGG-----GTACANTTTTGCAAAAANCGAATGAAAACGTACAA--A-A-TTATGCAG-AAAGATT-GCTAGATTTGGGTCAAGATGCATTCGAAGAATATCA-GGGAGA-TTTACAATTTATT-G-AAAA--AAT--GTTGGTTGGNTATTTCGTAAATGGGTTGGCGTATGATTATATGAAAATG-A-GGTTAATGAG-AGAAAA---T-C-----A--CATAACTCTCCAAGCAGCGGTNA-ATNCGGCCATGANNGAACAAAAT---CTTA--GGA-----AAAA---ACTAG----AA-TTAAAAAC-AGGTCAAAATTCA-GGAAAT-GATTTTC-ATAATAGACNA--CAGATAAACTCTC-NAAATGGCAAGGAAAACCAGGTTATCAGTAAAAGATCGANAGGTTACAAANGAAGCAATGCTCAAGGCAAAA
Alignments
lowQualScore : 1 11 1 11111 111111 11111111 1111 222222222222 1111111
lowQualScore : 77 0 1 1 5 00 1 1 44444 1 1 1 1 33 111111 5 5 0 1 5 5 33 5 5 77 77 1 2 0 0 1 4 0 4 4 1 4 777 4 33333333 22 0 0 5 2 4444 6 22 777 888888888888 666 8 4444444 1 6 3 3 3 4 55555 44 1 1 0 1
lowQualScore : .. . . . . .. . . ..... . . . . .. ...... . . . . . . .. . . .. .. . . . . . . . . . . . ... . ........ .. . . . . .... . .. ... ............ ... . ....... . . . . . . ..... .. . . . .
lowQualScore : 11 6 6 4 0 11 4 4 33333 9 0 0 4 00 777777 7 7 6 4 7 7 11 7 7 99 99 0 0 8 2 1 4 1 4 4 9 4 888 4 77777777 88 1 1 4 6 7777 7 00 000 000000000000 444 0 7777777 0 2 6 6 1 1 11111 11 0 0 2 5
consensus : AGTAAGCGATTTC-GTTCAAAGATGGATAATTAATAATCCTAGT-ACAACTTGGTCACAATTGAAAAATGGACTT-GCAACGCGATACGCTGAGGTAATAGATTCTCATCATTCGTTAATGCTACTGG-----GTACANTTTTGCAAAAANCGAATGAAAACGTACAA--A-A-TTATGCAG-AAAGATT-GCTAGATTTGGGTCAAGATGCATTCGAAGAATATCA-GGGAGA-TTTACAATTTATT-G-AAAA--AAT--GTTGGTTGGNTATTTCGTAAATGGGTTGGCGTATGATTATATGAAAATG-A-GGTTAATGAG-AGAAAA---T-C-----A--CATAACTCTCCAAGCAGCGGTNA-ATNCGGCCATGANNGAACAAAAT---CTTA--GGA-----AAAA---ACTAG----AA-TTAAAAAC-AGGTCAAAATTCA-GGAAAT-GATTTTC-ATAATAGACNA--CAGATAAACTCTC-NAAATGGCAAGGAAAACCAGGTTATCAGTAAAAGATCGANAGGTTACAAANGAAGCAATGCTCAAGGCAAAA
Reference ( family-937 ) : AGTAAGCGATTTC-GTTCAAAGATGGATAATTAATAATCCTAGT-ACAACTTGGTCACAATTGAAAAATGGACTT-GCAACGCGATACGCTGAGGTAATAGATTCTCATCATTCGTTAATGCTACTGG-----GTACANTTTTGCAAAAANCGAATGAAAACGTACAA--A-A-TTATGCAG-AAAGATT-GCTAGATTTGGGTCAAGATGCATTCGAAGAATATCA-GGGAGA-TTTACAATTTATT-G-AAAA--AAT--GTTGGTTGGNTATTTCGTAAATGGGTTGGCGTATGATTATATGAAAATG-A-GGTTAATGAG-AGAAAA---T-C-----A--CATAACTCTCCAAGCAGCGGTNA-ATNCGGCCATGANNGAACAAAAT---CTTA--GGA-----AAAA---ACTAG----AA-TTAAAAAC-AGGTCAAAATTCA-GGAAAT-GATTTTC-ATAATAGACNA--CAGATAAACTCTC-NAAATGGCAAGGAAAACCAGGTTATCAGTAAAAGATCGANAGGTTACAAANGAAGCAATGCTCAAGGCAAAA
gi|17213 : AGTAAGCGATTTC-ATTCAAAGATGGATAATTAATAATCCTAGT-ACAACTTGGTTACAATTGAAAAATGGACTT-ACAAAGCAATACGCTGAGGTAATAGATTCTCATCATTCGTTAATGTTACTGG-----GTACAATTTTGCAAAAACCAAATGAAAATGTACAA--A-A-TTATGCAG-AAAGATT-GCTAGATTTGGGTCAAGATGCATTCAAAGAATATCA-GGGAGA-TTTACAATTTATT-G-AAAA--AAT--GTTGGTTGGTTATTTCATAAATGGATTGTTGTATGATTATATGAAAATG-A-GGTTAATGAG-AGAAAA---T-C-----A--CATAACTCTCCAAGCAGCAGTCA-ATTCGGCCATGACAGAACAAAAT---CTTA--GGA-----AAAA---ATTAG----AA-TTAAAAAC-AGGTCAAAATGCA-AGAAAT-ATTTTTC-AAAAGAAAAAT--CAGATGAAATTGC-TAAATGATAATGAAAACCAGGTTATCAGTAAAAGATCAACAGGTTACAAACAAAGCAATGCTCAAGGCAAAA
gi|17214 : AGTAAGCGATTTC-ATTCAAAGATGGATAATTAATAATCCTAGT-ACAACTTGGTTACAATTGAAAAATGGACTT-ACAAATCAATACGCTGAGGTAATAGATTCTCATCATTCGTTAATGTTACTTG-----GTACAATTTTGCAAAAACCAAATGAAAATGTACAA--A-A-TTATGCAG-AAAGATT-GCTAGATTTGAGTCAAGATGCATTCAAAGAATATCA-GGGAGA-TTTACAATTTATT-G-AAAA--AAA--GTTGGTTGGTTATTTCATAAATGGATTGTTGTATGATTATATGAAAATG-A-GGTTAATGAG-AGAAAA---T-C-----A--CATAACTCTCCAAGCAGCAGTCA-ATTCGGTCATGACAGAACAAAAT---CTTA--GAA-----AAAC---ATTAG----AA-TTAAAAAC-AGGTCAAAATTCA-AGAAAT-AAGTTTC-AAAAGAGAAAT--CAGATGAAATTGC-TAAATGATTATGAAAACCAGGTTATCAGTAAAAGATCCACAGGTTACAAACAAAGCAATGCTCGAGGCAAAA
gi|17215 : AGTAAGCGATTTT-ATTCAAAGATGGATAATTAATAATCCTAGT-AAAACTTGGTCACAGTTGAAAAATTGACTT-GTAACGCAATACGCTTAGGTAAAAGATTCTTATCATTCGTTAATGCTTCTGG-----GTACATTTTTGCAAAAAACAAATGAAAATGTACAA--A-A-TTATGCAG-AAAGATT-GCTAGATTTGGGTCAAGATGCATTCAAAGAATATCA-GAGAGA-TTTACAATTTATT-G-AAAA--AAT--GTTGGTTGGATATTTCATAAATGGGTTGGTGTATGATTATATGAAAATG-A-GGTTAATGAG-AGAATA---T-C-----A--CATTACTCTCCAATCAGCAGTAA-ATTCGGCCATGATAGAACAAAAT---CTTAGGGGA-----AAAA---A--GG----AA-TTAAAAAC-AGGTCAAAATTCA-AGAAAT-AATTTTCAATAA-AGAAAT--CAGATGAATTTTC-TAAATGGCAATGAAAACCAGGTTACCAGTAAAAGATCCACAGGTTACAAACAAAGCAATGCTCAAGGTAAAA
gi|17216 : AGTAAGCGATTTC-ATTCAAAGATGGATAACTAATTATCCTAGT-ACAACTTGGTCACAATTGAAAAATGGGCTT-GCAACGCAATACGCTGAGGTAATAGATAATCATCATTCGTTAATGCTACTGGGTACTGTACATTTTTGCAAAAACCAAATGAAAATGTACAA--A-A-TTATGCAG-AAAGATT-GCTAGATTTGGGTCAAGATGCATTCAAAGAATATTA-CGAAAA-TTTACAATTTATT-GAAAAA--AAT--GTTGGTTTGATATTTGATAAATGGGTTTGGGTATGATTATATTAAAATG-A-TGTTAATGAG-AGAAAA---T-T-----A--CATAACTCTCCAAGCAGCAGTCA-ATTCGGCCATGATACAACAAAAT---CT-------------AAA---ATAAG----AA-TTAAAAAC-AGGTCAAAATTCA-ACAAAT-AATTTTC--TAA-AGAGAAATCAGATGAATTTTC-TAAATGGCAATGAAAACCAGGTTGTCAGTAAAAGATACACAGGTTACAAACAAAGCAATGCTCAAAGTAAAA
gi|17217 : AGTTAGCGATTTTTATTCACAGATGGATAATTGATAATCCTAGT-AAAACTTGGGCACAAATGAAATATGAACTT-GAAACGCGATATGCCGAGGTAATATATTTCCACCATTCATTAATGTTACTGG-----GGAAGATTTTGCAAAAGACAAATGAAATTGTACAA--A-AACTATGCAG-AAAGATT-ACTGGATTTGGGTTTAGATGCGTTCAAAGAATATCA-GGGCGA-TTTATAATTTATT-G-AGCA--GAT--GTTAGTTAGATATTTCATAAATGGATTAGCGTATGATTATCTAAACATG-A-GGTTAATGAC-AGAATA---T-C-----A--CACCACTCTTCAAACAGCCGTTA-CACCCACCATGACCGAGCAAAAT---TTTA--GGA-----AAAA---AATAG----AA-TT---AAC-AAGTCAGAATTGG-GGAAAT-GATTTTC-ATAAGAGACAT--CACATAAATTCTC-TATATGGCAAGGAAAACAAGATTATCAATAAAAGATCGACATGTTACAATGGAAGCAAGGCTCATGGTAAA
gi|17218 : GTAAGTGATTTT-GTACAGAGATATCTAAATGATCATCCAAATGACA-CTTGGG-ATAATTTCAAAATAGAATTAGCGTCACAATTTGCTGAAATTACTGACTCTCGGCATGCATTTATGCTACTTA-----GAACCGTTAAACAAAAAATGTCTGAACCCGTGCAA------TTATATTGTGAACATTTGCTTGCTCTAGCGGAGGAGGCATTTGAAGGACATCATGGGGAA-TTGGCAACA-ATC-G-AAAGGCAAT----TGGTTGGCTTCTTTGTTGATAGGTTAGCACATGACTATCTTAAAATG-A-AGATTATGAG-AGAAAA---TCC-----AGCCATA---TTACAAGCTGCTGTGAGAAGC-GCGATGAATGAACAACAT---CT------------AAGA---ACTAGGTTCAATTTAAGATT-AGGTAAAGA
gi|17219 : GTAAGTGATTTT-GTACAGAGATATCTAAATTTTCATCCAAATGACA-CTTGGG-ATAATTTCAAAATAGAATTAGCGTCACGATTTGCTGAAATTACTGACTCTTAGCATGCATTTATGCTACTAA-----GAACCGTTAAACAAAAATTGTCTGAACCCGTGCTATCATA-TTGTG----AACGTTT-GCTTGCTCTAGCGGAAGAGGCATTTGTAGGACATCA-AGGGGAATTGGCAAC--ACTCG-AAAA--AAACAATTGGTCGGCTTCTTTGTTAATGGGTTTGCACATGACTATCTTAAAATG-AAGGTTA-TCAG-AGAAAA---T-CCAGCCA--CAT-----TACAAGCTGCGGTGAGAAGCG-CGATGAATGAACAAAAT---CT------------AAGA---ACTAGGTTCAA-TTTAAGACTAGGTAAAAA
gi|17220 : TTGGTTATTTCATTGACGGACTGTTGAATGACTACATGAAAATGAA-GGTT-ATGCG-AGATAACCCT-C-----A-----AACGCTCCAAGCGGCGGTAACATGC-GTCACTAATGAACAAAAT---ATTA--GAA-----AACACATACTAG---------AGAAACTAGGCCACAACCCATTGAAGTCGA---TC-ATAATAGGAAA--CAGGTGAA
gi|17221 : ATGATTAT--GAAAACC-A-GGTTA-TCAGTAAAAGA---T-C--------CACAGGT-TACAAACA------A-A----GCAATGCTCGA----------------GGC-----AAAA---A---------G-TTAAGATC-AAATCAAAATTCA-GGAAAT-GATTTTC-ATAATAGACCA--CAGATAAACTTTC-AAAATGGCAAGGAAATTCAGGTTATCAGTAAAAGATCGAAAGGTTACAAAGGAAATCATGCTCAAGGCAAA
gi|17222 : attgctaaGAATAAAATTTACTTA--TTATATACAAAG---ACTTG-------TTGAGATC-AAGTCAAAATTCA-GGA--------------AATAGATCA--CAGATAAACTCTCAAAAATGGCAAGGAAAATCAGATTATCAGTAAAAGGTCGAAAGGTTACAACAGAAGTCACACTCAAGGCAAA
gi|17223 : AA---AGTAA----AA-GTTAAGAT-AAGTCAAAATTCT-GGAAAT-GATTTTC-ATAATAGACAA--CAGATAAACTCTC-AAAATGGCAAGGGAAACCAGGTCATCAGTAAAAGATCGAAAGGTTACTAAAGAAGTCATGCTCAAGGCAAA
gi|17224 : AA----AG-TTAAGATC-AAGTCAAAATTCA-GGAAAT-GATTTTC-ATAATAGACCA--CAGATAAACTCTC-AAAATGGCAAGGAAAATCAGATTATCAGTAAAAGATCGAAAGGTTACAAAAGAAGTCATGCTCAAGGCAAA
gi|17225 : AA----AG-TTAACATC-AAGTCAAAATTCA-GGAAAT-GATTTTC-ATAATTGACCA--CAGATAAACCCTT-AAAATGGCAAGGAAAATCAGGTTATCAGTAAAAGATCGAAAGGTTAAAAAATAAGTCATGCTCAAGGCAAA
gi|17226 : TTTC-ATAATAGACCA--CAGATAAACTCTC-AAAATGGCAAGGAAAATCAGGTTATCAGTAAAAGATCGAAATGTTACAAAAGAGTCAA-GCTCAAGGCAAA
gi|17227 : TTTC-ATAATAGACCA--CAGATAAACTCTC-AAAATGGCAAGGAAATTCAGGTTATCAGTAAAAGATCGAAATGTTACAAAAGAGTCAA-GCTCAAGGCAAA
gi|17228 : AAATTTTC-TTAATGGCAAACAAAACCAGGTTATCAGTAAAAGATCCACAGGTTACAAACAAAGTAATGCTCAAGGCAAAA