lowQualScore                  :                                     1            1111111111111                 11        1                                     2222222222222222222                          11111                                                              
lowQualScore                  :                  44                 5            4444444444444     444       1 22        4   3    3            3  3  7777  5   4444444444444444444  3                       66666     3 3   555                                                
lowQualScore                  :                  ..                 .            .............     ...       . ..        .   .    .            .  .  ....  .   ...................  .                       .....     . .   ...                                                
lowQualScore                  :                  22                 3            7777777777777     777       2 88        3   3    3            3  3  1111  9   1111111111111111111  3                       77777     3 3   888                                                
consensus                     : ATAAATCCAGCACTGTA--AACCAGAAGATAAAACCAGCACTGTAAACC-------------AGAAG---AATCCAATCCAATCAAAAGTATA-TTGA-TATGCTGGAGAA-CA-TA----GAGAAA----ACA------------TG-GAAAACATGATGACAGAGACACA-----AAAAA-G-TCA---GAAATATAGTCCCCATAAATTGGTACACCTGTAAAGTATATATTTGCA
Reference ( gi|113110 )       : ATAAATCCAGCACTGTA--AACCAGAAGATAAAACCTGCACTGTAAACC-------------AGAAG---AATCCAATCCGATCAAAAGAATA-TTGA-TATGCTGGAGAA-CA-TA----GAGAAA----ACA------------TG-GAAAACATGATGACAGAGACACA-----AAAAA-G-TCA---GAAATATAGTCCCCATAAATTGGTACACCTGTAAAGTATATATTTGCA
gi|113108                     : ATAAAACCAGCACTGTA--AACCAGAAGATAAAACCAGCACTGTTAACC-------------AGAAG---AATCCAATCCAATCAAAAGTATA-TTGA-TATGCTGGAGAA-CA-TA----GAGAAA----ACA------------TG-GAAAAAATGATGACAAAGACACA-----AAAAA-G-TCA---GAAATATAGTCCCCATAAATTGGTTCACCTGTAAAGTATATATTTGCA
gi|113111                     : ATAAAACCAGCACTGTA--AACCAGAAGATAAG-CCAGCACTGTAAACC-------------AGAAG---AATCCAATTCAATCAAAAGTATA-TTGA-TATGCTGGAGAA-CA-TA----GAGAAA----ACA------------TG-GGAAAAATGATGACAGAGACACA-----AAAAA-G-TCA---GAAATATAGT-CCCATAAATTGGTACACTTGTAAAGTATATATTTGCA
gi|113115                     : ATAAATCAAGCACTGTA--AATTAGAAGATAAAACCAGCACTGAAAACC-------------AGAAG---AATCCAATCCAATCAAAAGTATA-TTGA-TATGCTGGAGAA-CA-TA----GAAAAA----ACA------------TG-GAAAAAATGATGACAGAGACACA-----AAAAA-G-TCA---GAAATATAGTCCCCATCAATTGGTACACCAGTAAAGTACATATTTGCA
gi|113114                     : ATAAAACCAGCACTGCA--AACCAGAAGATAAAACCTGCACTGTAAACC-------------AGAAG---AATCAAATCCAATCAAAAGTATA-TTGA-TATGCTGGAGAA-CA-TA----GA--------------------------GAAAACATGATGACAGAGACACA-----AAAAA-G-TCA---GAAATATAGTCCCCATAAATTGGTACACCTGTAAAGTATATATTTG
gi|113109                     : ATAAATTCAGCACTGTA--AACCAGAAGATAAAACCAGCACTGTAAACT-------------AGAAG---AATCCAATCCAATCAAAAGTATA-TTGA-TATGCAGGAGAA-CA-TA----GA--------------------------GAAAACATGATGACAGAGACACA-----AAAAA-G-TCA---GAAATATAGTCCCCATAAATTGGTACACCTGTAAAGTATATATTTGCA
gi|113112                     : ATAAATCCAGCACTGTA--AACCAGAAGATAAAACCAGCACTGTAAACCAGCACTGTAAAGAAGAAG---AATCCAATCCAATCAAAAGTATA-TTGA-TATGCAGGAGAA-CA-TA----GAGAAA----ACA------------TA-GAAAACATGATGACAGAGACACA-----AAAAA-GATCA---GAAATATAGTCCCCATAAATTGGTACATCCGTTAAGTATATATTTACA
gi|113119                     : ATAAATCAAGCACTGTA--AACCAGAAGATAAAACCAGCACTGTAAACG-------------AGAAG---A------------TAGAAGA-----------TGCTGGAGAA-CG-TA----GAGAAA----ACA------------TG-AAAAACATAATGACAGAGACACA-----AAAAT-G-TCA---GAAATATAGT-CCCATAAACTGGTACACCTGTAAAGTATATATTTGCA
gi|113113                     : ATAAACCCAGCACTGTA--AACCAGAAGATAAAACCAGCACTGTAAATC-------------AGAAGATAAATCCA
gi|113118                     : ATAAATTCAGCACTGTA--AACCAGAAGATAAAACTAGCACTGTAAACC-------------AGAAG---A
gi|113116                     : ATAAATCCAGCACTGTA--AACC-GAAGATAAAACCAGCACTGTTAACC-------------AGAAG---A
gi|113117                     :   AAATTC-GCACTGTA--AACCAGAAGATAAAACAAGCACTGTAAACC-------------AGAAG---AATCCAATCAAATCAAAAGTATA-TTTA-TATGCTGGAGAA-CA-TA----GA--------------------------GAAAACATGATGACAGAGACACA-----AAACA-G-TCA---GAAATATAGTCCCCGTAAATTAGTACACCTGTAAAGTATATATTTGCA
gi|113120                     :    ataCCAGCACTGTT--AACCAGAAGATAAAACCAGCACTGTAAACC-------------AGAAG---AATCCAA-CTAATCAAAAGTATA-TTGA-TATGCTGGAGAA-CA-TATATAGACAAA----ACA------------TG-GAAAACATGATGACAGAGACACA-----AAAAATG-TCA---GAAATATAGTCCCCATAAATTGGTACAACTGTTAAGTATATATTTGCA
gi|113121                     :            ACTGTATGAATACGAAGA---AACAAGCACTGTTAACC-------------AGAAG---AATCCAATC-----ACAGGCATA-TTGA-TATGCTGGAGTA-CG-TG----GAGAAATGAAAAA------------TTTAAAAATATGATGACAGAGACACGTCATCAGAAT-G-TAA---GAAATATCGTCCCCATAAATTGGTACACCTGTAAGGTTTATTCTTGCA
gi|113122                     :                        AGAAGA--AAACCAACCCTGTAAACC-------------AGAAG---AATCCAA---GGT-------ATGCTTGAGTATG-TAGAGAAACAGTA----ATGGAA----ATT------------TG-GGAAACATGGTGAAAGAGACGCGTAATCAAAAA-G-TCA---GAAATATGGTCTCC
gi|113123                     :                          AAGAAGAAACCAGAACTGTAA-CC-------------AGAAG---AATCCAATC-----AAAAGCATA-TTGA-TATGCTGTAGTA-CG-TA----GAGAAA-----CAGTAATGTAAATCTG-GAAAACATGATGACAGAGACAC------------G-TCATAAGAAATATGGTCCCCATAAATTGGTACACCTGTGAAGTATAT





Alignments
lowQualScore                  :                                                     1111111111111                                                                 2222222222222222222                          11111                                                              
lowQualScore                  :                     33                              3333333333333     444       0 4             3    3            3 6666 3    4   0000000000000000000  3                       55555     3 3   555                                                
lowQualScore                  :                     ..                              .............     ...       . .             .    .            . .... .    .   ...................  .                       .....     . .   ...                                                
lowQualScore                  :                     99                              8888888888888     444       4 7             1    1            1 5555 1    7   1111111111111111111  1                       44444     1 1   444                                                
consensus                     :    ATAAATCCAGCACTGTA--AACCAGAAGATAAAACCAGCACTGTAAACC-------------AGAAG---AATCCAATCCAATCAAAAGTATA-TTGA-TATGCTGGAGAA-C----A-TAGAGAAA----ACA------------TG-GAAAACATGATGACAGAGACACA-----AAAAA-G-TCA---GAAATATAGTCCCCATAAATTGGTACACCTGTAAAGTATATATTTGCA
Reference ( family-936 )      :    ATAAATCCAGCACTGTA--AACCAGAAGATAAAACCAGCACTGTAAACC-------------AGAAG---AATCCAATCCAATCAAAAGTATA-TTGA-TATGCTGGAGAA-C----A-TAGAGAAA----ACA------------TG-GAAAACATGATGACAGAGACACA-----AAAAA-G-TCA---GAAATATAGTCCCCATAAATTGGTACACCTGTAAAGTATATATTTGCA
gi|113108                     :    ATAAAACCAGCACTGTA--AACCAGAAGATAAAACCAGCACTGTTAACC-------------AGAAG---AATCCAATCCAATCAAAAGTATA-TTGA-TATGCTGGAGAA-C----A-TAGAGAAA----ACA------------TG-GAAAAAATGATGACAAAGACACA-----AAAAA-G-TCA---GAAATATAGTCCCCATAAATTGGTTCACCTGTAAAGTATATATTTGCA
gi|113109                     :    ATAAATTCAGCACTGTA--AACCAGAAGATAAAACCAGCACTGTAAACT-------------AGAAG---AATCCAATCCAATCAAAAGTATA-TTGA-TATGCAGGAGAA-C----A-TAGA--------------------------GAAAACATGATGACAGAGACACA-----AAAAA-G-TCA---GAAATATAGTCCCCATAAATTGGTACACCTGTAAAGTATATATTTGCA
gi|113110                     :    ATAAATCCAGCACTGTA--AACCAGAAGATAAAACCTGCACTGTAAACC-------------AGAAG---AATCCAATCCGATCAAAAGAATA-TTGA-TATGCTGGAGAA-C----A-TAGAGAAA----ACA------------TG-GAAAACATGATGACAGAGACACA-----AAAAA-G-TCA---GAAATATAGTCCCCATAAATTGGTACACCTGTAAAGTATATATTTGCA
gi|113111                     :    ATAAAACCAGCACTGTA--AACCAGAAGATAAG-CCAGCACTGTAAACC-------------AGAAG---AATCCAATTCAATCAAAAGTATA-TTGA-TATGCTGGAGAA-C----A-TAGAGAAA----ACA------------TG-GGAAAAATGATGACAGAGACACA-----AAAAA-G-TCA---GAAATATAGT-CCCATAAATTGGTACACTTGTAAAGTATATATTTGCA
gi|113112                     :    ATAAATCCAGCACTGTA--AACCAGAAGATAAAACCAGCACTGTAAACCAGCACTGTAAAGAAGAAG---AATCCAATCCAATCAAAAGTATA-TTGA-TATGCAGGAGAA-C----A-TAGAGAAA----ACA------------TA-GAAAACATGATGACAGAGACACA-----AAAAA-GATCA---GAAATATAGTCCCCATAAATTGGTACATCCGTTAAGTATATATTTACA
gi|113113                     :    ATAAACCCAGCACTGTA--AACCAGAAGATAAAACCAGCACTGTAAATC-------------AGAAGATAAATCCA
gi|113114                     :    ATAAAACCAGCACTGCA--AACCAGAAGATAAAACCTGCACTGTAAACC-------------AGAAG---AATCAAATCCAATCAAAAGTATA-TTGA-TATGCTGGAGAA-C----A-TAGA--------------------------GAAAACATGATGACAGAGACACA-----AAAAA-G-TCA---GAAATATAGTCCCCATAAATTGGTACACCTGTAAAGTATATATTTG
gi|113115                     :    ATAAATCAAGCACTGTA--AATTAGAAGATAAAACCAGCACTGAAAACC-------------AGAAG---AATCCAATCCAATCAAAAGTATA-TTGA-TATGCTGGAGAA-C----A-TAGAAAAA----ACA------------TG-GAAAAAATGATGACAGAGACACA-----AAAAA-G-TCA---GAAATATAGTCCCCATCAATTGGTACACCAGTAAAGTACATATTTGCA
gi|113116                     :    ATAAATCCAGCACTGTA--AACC-GAAGATAAAACCAGCACTGTTAACC-------------AGAAG---A
gi|113117                     :      AAATTC-GCACTGTA--AACCAGAAGATAAAACAAGCACTGTAAACC-------------AGAAG---AATCCAATCAAATCAAAAGTATA-TTTA-TATGCTGGAGAA-C----A-TAGA--------------------------GAAAACATGATGACAGAGACACA-----AAACA-G-TCA---GAAATATAGTCCCCGTAAATTAGTACACCTGTAAAGTATATATTTGCA
gi|113118                     : ataATAAATTCAGCACTGTA--AACCAGAAGATAAAACTAGCACTGTAAACC-------------AGAAG---A
gi|113119                     :    ATAAATCAAGCACTGTA--AACCAGAAGATAAAACCAGCACTGTAAACG-------------AGAAG---A------------TAGAAG-----------ATGCTGGAGAA-C----G-TAGAGAAA----ACA------------TG-AAAAACATAATGACAGAGACACA-----AAAAT-G-TCA---GAAATATAGT-CCCATAAACTGGTACACCTGTAAAGTATATATTTGCA
gi|113120                     :          CCAGCACTGTT--AACCAGAAGATAAAACCAGCACTGTAAACC-------------AGAAG---AATCCAA-CTAATCAAAAGTATA-TTGA-TATGCTGGAGAA-CATATA-TAGACAAA----ACA------------TG-GAAAACATGATGACAGAGACACA-----AAAAATG-TCA---GAAATATAGTCCCCATAAATTGGTACAACTGTTAAGTATATATTTGCA
gi|113121                     :               ACTGTATGAATACGAAGA---AACAAGCACTGTTAACC-------------AGAAG---AATCCAATC-----ACAGGCATA-TTGA-TATGCTGGAGTA-C----G-TGGAGAAATGAAAAA------------TTTAAAAATATGATGACAGAGACACGTCATCAGAAT-G-TAA---GAAATATCGTCCCCATAAATTGGTACACCTGTAAGGTTTATTCTTGCA
gi|113122                     :                           AGAAGA--AAACCAACCCTGTAAACC-------------AGAAG---AATCCAA----------GGTATGCTTGAGTATG-TAGAGAAAC----AGTAATGGAA----ATT------------TG-GGAAACATGGTGAAAGAGACGCGTAATCAAAAA-G-TCA---GAAATATGGTCTCC
gi|113123                     :                             AAGAAGAAACCAGAACTGTAA-CC-------------AGAAG---AATCCAATC-----AAAAGCATA-TTGA-TATGCTGTAGTA-C----G-TAGAGAAA-----CAGTAATGTAAATCTG-GAAAACATGATGACAGAGACAC------------G-TCATAAGAAATATGGTCCCCATAAATTGGTACACCTGTGAAGTATAT





Alignments
lowQualScore                  :                                                     1111111111111                                                                 2222222222222222222                          11111                                                              
lowQualScore                  :                     33                              3333333333333     444       0 4             3    3            3 6666 3    4   0000000000000000000  3                       55555     3 3   555                                                
lowQualScore                  :                     ..                              .............     ...       . .             .    .            . .... .    .   ...................  .                       .....     . .   ...                                                
lowQualScore                  :                     99                              8888888888888     444       4 7             1    1            1 5555 1    7   1111111111111111111  1                       44444     1 1   444                                                
consensus                     :    ATAAATCCAGCACTGTA--AACCAGAAGATAAAACCAGCACTGTAAACC-------------AGAAG---AATCCAATCCAATCAAAAGTATA-TTGA-TATGCTGGAGAA-C----A-TAGAGAAA----ACA------------TG-GAAAACATGATGACAGAGACACA-----AAAAA-G-TCA---GAAATATAGTCCCCATAAATTGGTACACCTGTAAAGTATATATTTGCA
Reference ( family-936 )      :    ATAAATCCAGCACTGTA--AACCAGAAGATAAAACCAGCACTGTAAACC-------------AGAAG---AATCCAATCCAATCAAAAGTATA-TTGA-TATGCTGGAGAA-C----A-TAGAGAAA----ACA------------TG-GAAAACATGATGACAGAGACACA-----AAAAA-G-TCA---GAAATATAGTCCCCATAAATTGGTACACCTGTAAAGTATATATTTGCA
gi|113108                     :    ATAAAACCAGCACTGTA--AACCAGAAGATAAAACCAGCACTGTTAACC-------------AGAAG---AATCCAATCCAATCAAAAGTATA-TTGA-TATGCTGGAGAA-C----A-TAGAGAAA----ACA------------TG-GAAAAAATGATGACAAAGACACA-----AAAAA-G-TCA---GAAATATAGTCCCCATAAATTGGTTCACCTGTAAAGTATATATTTGCA
gi|113109                     :    ATAAATTCAGCACTGTA--AACCAGAAGATAAAACCAGCACTGTAAACT-------------AGAAG---AATCCAATCCAATCAAAAGTATA-TTGA-TATGCAGGAGAA-C----A-TAGA--------------------------GAAAACATGATGACAGAGACACA-----AAAAA-G-TCA---GAAATATAGTCCCCATAAATTGGTACACCTGTAAAGTATATATTTGCA
gi|113110                     :    ATAAATCCAGCACTGTA--AACCAGAAGATAAAACCTGCACTGTAAACC-------------AGAAG---AATCCAATCCGATCAAAAGAATA-TTGA-TATGCTGGAGAA-C----A-TAGAGAAA----ACA------------TG-GAAAACATGATGACAGAGACACA-----AAAAA-G-TCA---GAAATATAGTCCCCATAAATTGGTACACCTGTAAAGTATATATTTGCA
gi|113111                     :    ATAAAACCAGCACTGTA--AACCAGAAGATAAG-CCAGCACTGTAAACC-------------AGAAG---AATCCAATTCAATCAAAAGTATA-TTGA-TATGCTGGAGAA-C----A-TAGAGAAA----ACA------------TG-GGAAAAATGATGACAGAGACACA-----AAAAA-G-TCA---GAAATATAGT-CCCATAAATTGGTACACTTGTAAAGTATATATTTGCA
gi|113112                     :    ATAAATCCAGCACTGTA--AACCAGAAGATAAAACCAGCACTGTAAACCAGCACTGTAAAGAAGAAG---AATCCAATCCAATCAAAAGTATA-TTGA-TATGCAGGAGAA-C----A-TAGAGAAA----ACA------------TA-GAAAACATGATGACAGAGACACA-----AAAAA-GATCA---GAAATATAGTCCCCATAAATTGGTACATCCGTTAAGTATATATTTACA
gi|113113                     :    ATAAACCCAGCACTGTA--AACCAGAAGATAAAACCAGCACTGTAAATC-------------AGAAGATAAATCCA
gi|113114                     :    ATAAAACCAGCACTGCA--AACCAGAAGATAAAACCTGCACTGTAAACC-------------AGAAG---AATCAAATCCAATCAAAAGTATA-TTGA-TATGCTGGAGAA-C----A-TAGA--------------------------GAAAACATGATGACAGAGACACA-----AAAAA-G-TCA---GAAATATAGTCCCCATAAATTGGTACACCTGTAAAGTATATATTTG
gi|113115                     :    ATAAATCAAGCACTGTA--AATTAGAAGATAAAACCAGCACTGAAAACC-------------AGAAG---AATCCAATCCAATCAAAAGTATA-TTGA-TATGCTGGAGAA-C----A-TAGAAAAA----ACA------------TG-GAAAAAATGATGACAGAGACACA-----AAAAA-G-TCA---GAAATATAGTCCCCATCAATTGGTACACCAGTAAAGTACATATTTGCA
gi|113116                     :    ATAAATCCAGCACTGTA--AACC-GAAGATAAAACCAGCACTGTTAACC-------------AGAAG---A
gi|113117                     :      AAATTC-GCACTGTA--AACCAGAAGATAAAACAAGCACTGTAAACC-------------AGAAG---AATCCAATCAAATCAAAAGTATA-TTTA-TATGCTGGAGAA-C----A-TAGA--------------------------GAAAACATGATGACAGAGACACA-----AAACA-G-TCA---GAAATATAGTCCCCGTAAATTAGTACACCTGTAAAGTATATATTTGCA
gi|113118                     : ataATAAATTCAGCACTGTA--AACCAGAAGATAAAACTAGCACTGTAAACC-------------AGAAG---A
gi|113119                     :    ATAAATCAAGCACTGTA--AACCAGAAGATAAAACCAGCACTGTAAACG-------------AGAAG---A------------TAGAAG-----------ATGCTGGAGAA-C----G-TAGAGAAA----ACA------------TG-AAAAACATAATGACAGAGACACA-----AAAAT-G-TCA---GAAATATAGT-CCCATAAACTGGTACACCTGTAAAGTATATATTTGCA
gi|113120                     :          CCAGCACTGTT--AACCAGAAGATAAAACCAGCACTGTAAACC-------------AGAAG---AATCCAA-CTAATCAAAAGTATA-TTGA-TATGCTGGAGAA-CATATA-TAGACAAA----ACA------------TG-GAAAACATGATGACAGAGACACA-----AAAAATG-TCA---GAAATATAGTCCCCATAAATTGGTACAACTGTTAAGTATATATTTGCA
gi|113121                     :               ACTGTATGAATACGAAGA---AACAAGCACTGTTAACC-------------AGAAG---AATCCAATC-----ACAGGCATA-TTGA-TATGCTGGAGTA-C----G-TGGAGAAATGAAAAA------------TTTAAAAATATGATGACAGAGACACGTCATCAGAAT-G-TAA---GAAATATCGTCCCCATAAATTGGTACACCTGTAAGGTTTATTCTTGCA
gi|113122                     :                           AGAAGA--AAACCAACCCTGTAAACC-------------AGAAG---AATCCAA----------GGTATGCTTGAGTATG-TAGAGAAAC----AGTAATGGAA----ATT------------TG-GGAAACATGGTGAAAGAGACGCGTAATCAAAAA-G-TCA---GAAATATGGTCTCC
gi|113123                     :                             AAGAAGAAACCAGAACTGTAA-CC-------------AGAAG---AATCCAATC-----AAAAGCATA-TTGA-TATGCTGTAGTA-C----G-TAGAGAAA-----CAGTAATGTAAATCTG-GAAAACATGATGACAGAGACAC------------G-TCATAAGAAATATGGTCCCCATAAATTGGTACACCTGTGAAGTATAT


blockSeqs                     :                     TG                              AGCACTGTAAAGA     ATA         C             C    G            A ATAT G    G   CAGTAATGTAAATC       T                       TCATC     T A   TAA
blockSeqs                     :                     .                               .                 .           C             .    .            . .    .    G   TGAAAAA              .                       TAATC     . .   .  
blockSeqs                     :                     .                               .                 .           C             .    .            . .    .    G   ACA                  .                       .         . .   .  
blockSeqs                     :                     .                               .                 .           C             .    .            . .    .    A   ACA                  .                       .         . .   .  
blockSeqs                     :                     .                               .                 .           C             .    .            . .    .    G   ACA                  .                       .         . .   .  
blockSeqs                     :                     .                               .                 .           C             .    .            . .    .    C   ACA                  .                       .         . .   .  
blockSeqs                     :                     .                               .                 .           A             .    .            . .    .    G   ACA                  .                       .         . .   .  
blockSeqs                     :                     .                               .                 .           T             .    .            . .    .    G   ACA                  .                       .         . .   .  
blockSeqs                     :                     .                               .                 .           .             .    .            . .    .    G   ATT                  .                       .         . .   .  
blockSeqs                     :                     .                               .                 .           .             .    .            . .    .    .   .                    .                       .         . .   .  
blockSeqs                     :                     .                               .                 .           .             .    .            . .    .    .   .                    .                       .         . .   .  
blockSeqs                     :                     .                               .                 .           .             .    .            . .    .    .   .                    .                       .         . .   .  
blockSeqs                     :                     .                               .                 .                                                                                                                           
blockSeqs                     :                                                     .                 .                                                                                                                           
blockSeqs                     :                                                     .                 .                                                                                                                           


blockSeqCons                  :    
originalCons                  :    ATAAATCCAGCACTGTA--AACCAGAAGATAAAACCAGCACTGTAAACC-------------AGAAG---AATCCAATCCAATCAAAAGTATA-TTGA-TATGCTGGAGAA-C----A-TAGAGAAA----ACA------------TG-GAAAACATGATGACAGAGACACA-----AAAAA-G-TCA---GAAATATAGTCCCCATAAATTGGTACACCTGTAAAGTATATATTTGCA
finalCons                     :    ATAAATCCAGCACTGTA--AACCAGAAGATAAAACCAGCACTGTAAACC-------------AGAAG---AATCCAATCCAATCAAAAGTATA-TTGA-TATGCTGGAGAA-C----A-TAGAGAAA----ACA------------TG-GAAAACATGATGACAGAGACACA-----AAAAA-G-TCA---GAAATATAGTCCCCATAAATTGGTACACCTGTAAAGTATATATTTGCA





Alignments
lowQualScore                  :                                                     1111111111111                                                                 2222222222222222222                          11111                                                              
lowQualScore                  :                     33                              3333333333333     444       0 4             3    3            3 6666 3    4   0000000000000000000  3                       55555     3 3   555                                                
lowQualScore                  :                     ..                              .............     ...       . .             .    .            . .... .    .   ...................  .                       .....     . .   ...                                                
lowQualScore                  :                     99                              8888888888888     444       4 7             1    1            1 5555 1    7   1111111111111111111  1                       44444     1 1   444                                                
consensus                     :    ATAAATCCAGCACTGTA--AACCAGAAGATAAAACCAGCACTGTAAACC-------------AGAAG---AATCCAATCCAATCAAAAGTATA-TTGA-TATGCTGGAGAA-C----A-TAGAGAAA----ACA------------TG-GAAAACATGATGACAGAGACACA-----AAAAA-G-TCA---GAAATATAGTCCCCATAAATTGGTACACCTGTAAAGTATATATTTGCA
Reference ( family-936 )      :    ATAAATCCAGCACTGTA--AACCAGAAGATAAAACCAGCACTGTAAACC-------------AGAAG---AATCCAATCCAATCAAAAGTATA-TTGA-TATGCTGGAGAA-C----A-TAGAGAAA----ACA------------TG-GAAAACATGATGACAGAGACACA-----AAAAA-G-TCA---GAAATATAGTCCCCATAAATTGGTACACCTGTAAAGTATATATTTGCA
gi|113108                     :    ATAAAACCAGCACTGTA--AACCAGAAGATAAAACCAGCACTGTTAACC-------------AGAAG---AATCCAATCCAATCAAAAGTATA-TTGA-TATGCTGGAGAA-C----A-TAGAGAAA----ACA------------TG-GAAAAAATGATGACAAAGACACA-----AAAAA-G-TCA---GAAATATAGTCCCCATAAATTGGTTCACCTGTAAAGTATATATTTGCA
gi|113109                     :    ATAAATTCAGCACTGTA--AACCAGAAGATAAAACCAGCACTGTAAACT-------------AGAAG---AATCCAATCCAATCAAAAGTATA-TTGA-TATGCAGGAGAA-C----A-TAGA--------------------------GAAAACATGATGACAGAGACACA-----AAAAA-G-TCA---GAAATATAGTCCCCATAAATTGGTACACCTGTAAAGTATATATTTGCA
gi|113110                     :    ATAAATCCAGCACTGTA--AACCAGAAGATAAAACCTGCACTGTAAACC-------------AGAAG---AATCCAATCCGATCAAAAGAATA-TTGA-TATGCTGGAGAA-C----A-TAGAGAAA----ACA------------TG-GAAAACATGATGACAGAGACACA-----AAAAA-G-TCA---GAAATATAGTCCCCATAAATTGGTACACCTGTAAAGTATATATTTGCA
gi|113111                     :    ATAAAACCAGCACTGTA--AACCAGAAGATAAG-CCAGCACTGTAAACC-------------AGAAG---AATCCAATTCAATCAAAAGTATA-TTGA-TATGCTGGAGAA-C----A-TAGAGAAA----ACA------------TG-GGAAAAATGATGACAGAGACACA-----AAAAA-G-TCA---GAAATATAGT-CCCATAAATTGGTACACTTGTAAAGTATATATTTGCA
gi|113112                     :    ATAAATCCAGCACTGTA--AACCAGAAGATAAAACCAGCACTGTAAACCAGCACTGTAAAGAAGAAG---AATCCAATCCAATCAAAAGTATA-TTGA-TATGCAGGAGAA-C----A-TAGAGAAA----ACA------------TA-GAAAACATGATGACAGAGACACA-----AAAAA-GATCA---GAAATATAGTCCCCATAAATTGGTACATCCGTTAAGTATATATTTACA
gi|113113                     :    ATAAACCCAGCACTGTA--AACCAGAAGATAAAACCAGCACTGTAAATC-------------AGAAGATAAATCCA
gi|113114                     :    ATAAAACCAGCACTGCA--AACCAGAAGATAAAACCTGCACTGTAAACC-------------AGAAG---AATCAAATCCAATCAAAAGTATA-TTGA-TATGCTGGAGAA-C----A-TAGA--------------------------GAAAACATGATGACAGAGACACA-----AAAAA-G-TCA---GAAATATAGTCCCCATAAATTGGTACACCTGTAAAGTATATATTTG
gi|113115                     :    ATAAATCAAGCACTGTA--AATTAGAAGATAAAACCAGCACTGAAAACC-------------AGAAG---AATCCAATCCAATCAAAAGTATA-TTGA-TATGCTGGAGAA-C----A-TAGAAAAA----ACA------------TG-GAAAAAATGATGACAGAGACACA-----AAAAA-G-TCA---GAAATATAGTCCCCATCAATTGGTACACCAGTAAAGTACATATTTGCA
gi|113116                     :    ATAAATCCAGCACTGTA--AACC-GAAGATAAAACCAGCACTGTTAACC-------------AGAAG---A
gi|113117                     :      AAATTC-GCACTGTA--AACCAGAAGATAAAACAAGCACTGTAAACC-------------AGAAG---AATCCAATCAAATCAAAAGTATA-TTTA-TATGCTGGAGAA-C----A-TAGA--------------------------GAAAACATGATGACAGAGACACA-----AAACA-G-TCA---GAAATATAGTCCCCGTAAATTAGTACACCTGTAAAGTATATATTTGCA
gi|113118                     : ataATAAATTCAGCACTGTA--AACCAGAAGATAAAACTAGCACTGTAAACC-------------AGAAG---A
gi|113119                     :    ATAAATCAAGCACTGTA--AACCAGAAGATAAAACCAGCACTGTAAACG-------------AGAAG---A------------TAGAAG-----------ATGCTGGAGAA-C----G-TAGAGAAA----ACA------------TG-AAAAACATAATGACAGAGACACA-----AAAAT-G-TCA---GAAATATAGT-CCCATAAACTGGTACACCTGTAAAGTATATATTTGCA
gi|113120                     :          CCAGCACTGTT--AACCAGAAGATAAAACCAGCACTGTAAACC-------------AGAAG---AATCCAA-CTAATCAAAAGTATA-TTGA-TATGCTGGAGAA-CATATA-TAGACAAA----ACA------------TG-GAAAACATGATGACAGAGACACA-----AAAAATG-TCA---GAAATATAGTCCCCATAAATTGGTACAACTGTTAAGTATATATTTGCA
gi|113121                     :               ACTGTATGAATACGAAGA---AACAAGCACTGTTAACC-------------AGAAG---AATCCAATC-----ACAGGCATA-TTGA-TATGCTGGAGTA-C----G-TGGAGAAATGAAAAA------------TTTAAAAATATGATGACAGAGACACGTCATCAGAAT-G-TAA---GAAATATCGTCCCCATAAATTGGTACACCTGTAAGGTTTATTCTTGCA
gi|113122                     :                           AGAAGA--AAACCAACCCTGTAAACC-------------AGAAG---AATCCAA----------GGTATGCTTGAGTATG-TAGAGAAAC----AGTAATGGAA----ATT------------TG-GGAAACATGGTGAAAGAGACGCGTAATCAAAAA-G-TCA---GAAATATGGTCTCC
gi|113123                     :                             AAGAAGAAACCAGAACTGTAA-CC-------------AGAAG---AATCCAATC-----AAAAGCATA-TTGA-TATGCTGTAGTA-C----G-TAGAGAAA-----CAGTAATGTAAATCTG-GAAAACATGATGACAGAGACAC------------G-TCATAAGAAATATGGTCCCCATAAATTGGTACACCTGTGAAGTATAT