lowQualScore : 111 111111
lowQualScore : 66 444 5555 2 888 333333
lowQualScore : .. ... .... . ... ......
lowQualScore : 33 777 7777 7 555 777777
consensus : TTTTTTGTATTTGAAGAAAA--TG---TATT----GCAGTGAAAAA-CATT--GACAC---AACTATACATTTCAAC
Reference ( gi|37414 ) : TTTTTTGTATTTGAAGAAAA--TG---TATT----GCAGTGAAAAA-CATT--TACAA---AGCTATACATTTCAAC
gi|37417 : TTCTTTGTATTTAAAGAAAA--TG---TATC----GCAGTCAAAAA-CATT--GACAA---AGTTATACATTTCAAC
gi|37418 : TTTTTTGTGTTTGAAGAAAA--TG---TATT----GCAGTGAAAAA-CATA--TACAC---AACTTTACGTTTCAAC
gi|37416 : TTTTTTGTATTTGAAGAAAA--TG---TATT----GCAGTTAAAAA-CATT--GGCAC---AACTATTCATTTCAAC
gi|37415 : TTTTTTGTATTTGAAGAAAA--TA---TATT----GTTGTGAAAAA-CGTT--AACAC---AACTATACATTTCAAC
gi|37423 : TTGTTTATATTTGAAGGAAA--TG---CATT----GCAGTAGAAAA-CATT--GACAC---AACTATACATTTCAAC
gi|37412 : tttTTTTTGGTATTATAAGAAAA--TG---TATA----GCAGTGAAAAC-CATT--AACAC---AGCTATACATTTCAAC
gi|37413 : TTTTTGGTATTATAAGAAAA--TG---TATA----GCAGTGAAACC-CATT--AACAC---AGCTATACATTTCAAC
gi|37420 : TTGTTTGTATTTAAAGAAAA--TG---TTTT----GCAGTGAAAAG-CA----CACAA-----CTATACATTTTAAC
gi|37421 : TTTTTTGTATTTGAAAAAAAA-CG---TATT----ACTATGAAAAA-CATT--GACAC---AACTATACATTTTA
gi|37419 : TTTTTTGTAT---AAGGAAA--TG---TATT----GCATTGAATAT-CATTGATACAA-----CTATGCATTTCAAC
gi|37422 : TCTTTGGTATTTGAAAAAAAAATG---AATT----GAAGTAAAAAAACAAT--GACAC---AGCTGTACATTTCAAC
gi|37424 : TTTTTGTATTCGAAGAAAA--TGTAATATTTCAAGCAGTG-AAAA-CATTAACACAACACAACTATACATTTCAAC
gi|37425 : TTTTGTATTTGAAGAAAA--TG---TATT----GCAATGAAAAA-CATT--GACAC---AACTATACATTTTAAC
gi|37426 : TTTTTTATTTGAAGAAAA--TG---TATT----GCAGTGAAAAA-CATT--AACAC---AACTATGCATTTCAA
gi|37427 : TGTATTTGAAGAAAA--TG---TATT----GCAGTGAAACA-CATT--GACAA---CATTATACATTTCAGC
Alignments
lowQualScore : 55 444 5555 2 66666
lowQualScore : .. ... .... . .....
lowQualScore : 99 444 3333 5 22222
consensus : TTTTTTGTATTTGAAGAAAA--TG---TATT----GCAGTGAAAAA-CATT-----GACACAACTATACATTTCAAC
Reference ( family-927 ) : TTTTTTGTATTTGAAGAAAA--TG---TATT----GCAGTGAAAAA-CATT-----GACACAACTATACATTTCAAC
gi|37412 : TTTTTGGTATTATAAGAAAA--TG---TATA----GCAGTGAAAAC-CATT-----AACACAGCTATACATTTCAAC
gi|37413 : TTTTTGGTATTATAAGAAAA--TG---TATA----GCAGTGAAACC-CATT-----AACACAGCTATACATTTCAAC
gi|37414 : TTTTTTGTATTTGAAGAAAA--TG---TATT----GCAGTGAAAAA-CATT-----TACAAAGCTATACATTTCAAC
gi|37415 : TTTTTTGTATTTGAAGAAAA--TA---TATT----GTTGTGAAAAA-CGTT-----AACACAACTATACATTTCAAC
gi|37416 : TTTTTTGTATTTGAAGAAAA--TG---TATT----GCAGTTAAAAA-CATT-----GGCACAACTATTCATTTCAAC
gi|37417 : TTCTTTGTATTTAAAGAAAA--TG---TATC----GCAGTCAAAAA-CATT-----GACAAAGTTATACATTTCAAC
gi|37418 : TTTTTTGTGTTTGAAGAAAA--TG---TATT----GCAGTGAAAAA-CATA-----TACACAACTTTACGTTTCAAC
gi|37419 : TTTTTTGTAT---AAGGAAA--TG---TATT----GCATTGAATAT-CATT-----GATACAACTATGCATTTCAAC
gi|37420 : TTGTTTGTATTTAAAGAAAA--TG---TTTT----GCAGTGAAAAG-C---------ACACAACTATACATTTTAAC
gi|37421 : TTTTTTGTATTTGAAAAAAAA-CG---TATT----ACTATGAAAAA-CATT-----GACACAACTATACATTTTA
gi|37422 : TCTTTGGTATTTGAAAAAAAAATG---AATT----GAAGTAAAAAAACAAT-----GACACAGCTGTACATTTCAAC
gi|37423 : TTGTTTATATTTGAAGGAAA--TG---CATT----GCAGTAGAAAA-CATT-----GACACAACTATACATTTCAAC
gi|37424 : tttTTTTTGTATTCGAAGAAAA--TGTAATATTTCAAGCAGTG-AAAA-CATTAACACAACACAACTATACATTTCAAC
gi|37425 : TTTTGTATTTGAAGAAAA--TG---TATT----GCAATGAAAAA-CATT-----GACACAACTATACATTTTAAC
gi|37426 : TTTTTTATTTGAAGAAAA--TG---TATT----GCAGTGAAAAA-CATT-----AACACAACTATGCATTTCAA
gi|37427 : TGTATTTGAAGAAAA--TG---TATT----GCAGTGAAACA-CATT-----GACAACATTATACATTTCAGC
Alignments
lowQualScore : 55 444 5555 2 66666
lowQualScore : .. ... .... . .....
lowQualScore : 99 444 3333 5 22222
consensus : TTTTTTGTATTTGAAGAAAA--TG---TATT----GCAGTGAAAAA-CATT-----GACACAACTATACATTTCAAC
Reference ( family-927 ) : TTTTTTGTATTTGAAGAAAA--TG---TATT----GCAGTGAAAAA-CATT-----GACACAACTATACATTTCAAC
gi|37412 : TTTTTGGTATTATAAGAAAA--TG---TATA----GCAGTGAAAAC-CATT-----AACACAGCTATACATTTCAAC
gi|37413 : TTTTTGGTATTATAAGAAAA--TG---TATA----GCAGTGAAACC-CATT-----AACACAGCTATACATTTCAAC
gi|37414 : TTTTTTGTATTTGAAGAAAA--TG---TATT----GCAGTGAAAAA-CATT-----TACAAAGCTATACATTTCAAC
gi|37415 : TTTTTTGTATTTGAAGAAAA--TA---TATT----GTTGTGAAAAA-CGTT-----AACACAACTATACATTTCAAC
gi|37416 : TTTTTTGTATTTGAAGAAAA--TG---TATT----GCAGTTAAAAA-CATT-----GGCACAACTATTCATTTCAAC
gi|37417 : TTCTTTGTATTTAAAGAAAA--TG---TATC----GCAGTCAAAAA-CATT-----GACAAAGTTATACATTTCAAC
gi|37418 : TTTTTTGTGTTTGAAGAAAA--TG---TATT----GCAGTGAAAAA-CATA-----TACACAACTTTACGTTTCAAC
gi|37419 : TTTTTTGTAT---AAGGAAA--TG---TATT----GCATTGAATAT-CATT-----GATACAACTATGCATTTCAAC
gi|37420 : TTGTTTGTATTTAAAGAAAA--TG---TTTT----GCAGTGAAAAG-C---------ACACAACTATACATTTTAAC
gi|37421 : TTTTTTGTATTTGAAAAAAAA-CG---TATT----ACTATGAAAAA-CATT-----GACACAACTATACATTTTA
gi|37422 : TCTTTGGTATTTGAAAAAAAAATG---AATT----GAAGTAAAAAAACAAT-----GACACAGCTGTACATTTCAAC
gi|37423 : TTGTTTATATTTGAAGGAAA--TG---CATT----GCAGTAGAAAA-CATT-----GACACAACTATACATTTCAAC
gi|37424 : tttTTTTTGTATTCGAAGAAAA--TGTAATATTTCAAGCAGTG-AAAA-CATTAACACAACACAACTATACATTTCAAC
gi|37425 : TTTTGTATTTGAAGAAAA--TG---TATT----GCAATGAAAAA-CATT-----GACACAACTATACATTTTAAC
gi|37426 : TTTTTTATTTGAAGAAAA--TG---TATT----GCAGTGAAAAA-CATT-----AACACAACTATGCATTTCAA
gi|37427 : TGTATTTGAAGAAAA--TG---TATT----GCAGTGAAACA-CATT-----GACAACATTATACATTTCAGC
blockSeqs : AA TAA TCAA A AACAC
blockSeqs : A . . . .
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blockSeqCons :
originalCons : TTTTTTGTATTTGAAGAAAA--TG---TATT----GCAGTGAAAAA-CATT-----GACACAACTATACATTTCAAC
finalCons : TTTTTTGTATTTGAAGAAAA--TG---TATT----GCAGTGAAAAA-CATT-----GACACAACTATACATTTCAAC
Alignments
lowQualScore : 55 444 5555 2 66666
lowQualScore : .. ... .... . .....
lowQualScore : 99 444 3333 5 22222
consensus : TTTTTTGTATTTGAAGAAAA--TG---TATT----GCAGTGAAAAA-CATT-----GACACAACTATACATTTCAAC
Reference ( family-927 ) : TTTTTTGTATTTGAAGAAAA--TG---TATT----GCAGTGAAAAA-CATT-----GACACAACTATACATTTCAAC
gi|37412 : TTTTTGGTATTATAAGAAAA--TG---TATA----GCAGTGAAAAC-CATT-----AACACAGCTATACATTTCAAC
gi|37413 : TTTTTGGTATTATAAGAAAA--TG---TATA----GCAGTGAAACC-CATT-----AACACAGCTATACATTTCAAC
gi|37414 : TTTTTTGTATTTGAAGAAAA--TG---TATT----GCAGTGAAAAA-CATT-----TACAAAGCTATACATTTCAAC
gi|37415 : TTTTTTGTATTTGAAGAAAA--TA---TATT----GTTGTGAAAAA-CGTT-----AACACAACTATACATTTCAAC
gi|37416 : TTTTTTGTATTTGAAGAAAA--TG---TATT----GCAGTTAAAAA-CATT-----GGCACAACTATTCATTTCAAC
gi|37417 : TTCTTTGTATTTAAAGAAAA--TG---TATC----GCAGTCAAAAA-CATT-----GACAAAGTTATACATTTCAAC
gi|37418 : TTTTTTGTGTTTGAAGAAAA--TG---TATT----GCAGTGAAAAA-CATA-----TACACAACTTTACGTTTCAAC
gi|37419 : TTTTTTGTAT---AAGGAAA--TG---TATT----GCATTGAATAT-CATT-----GATACAACTATGCATTTCAAC
gi|37420 : TTGTTTGTATTTAAAGAAAA--TG---TTTT----GCAGTGAAAAG-C---------ACACAACTATACATTTTAAC
gi|37421 : TTTTTTGTATTTGAAAAAAAA-CG---TATT----ACTATGAAAAA-CATT-----GACACAACTATACATTTTA
gi|37422 : TCTTTGGTATTTGAAAAAAAAATG---AATT----GAAGTAAAAAAACAAT-----GACACAGCTGTACATTTCAAC
gi|37423 : TTGTTTATATTTGAAGGAAA--TG---CATT----GCAGTAGAAAA-CATT-----GACACAACTATACATTTCAAC
gi|37424 : tttTTTTTGTATTCGAAGAAAA--TGTAATATTTCAAGCAGTG-AAAA-CATTAACACAACACAACTATACATTTCAAC
gi|37425 : TTTTGTATTTGAAGAAAA--TG---TATT----GCAATGAAAAA-CATT-----GACACAACTATACATTTTAAC
gi|37426 : TTTTTTATTTGAAGAAAA--TG---TATT----GCAGTGAAAAA-CATT-----AACACAACTATGCATTTCAA
gi|37427 : TGTATTTGAAGAAAA--TG---TATT----GCAGTGAAACA-CATT-----GACAACATTATACATTTCAGC