lowQualScore : 1 11 1
lowQualScore : 6 0 5555 44444 2 1 1 22 4 0 2 2 6 4 9999 0 0 6 88
lowQualScore : . . .... ..... . . . .. . . . . . . .... . . . ..
lowQualScore : 0 8 8888 88888 7 4 9 22 3 5 1 7 7 4 4444 1 2 5 44
consensus : ATTCTCCAATTCGAAAAGGCGAAATCTC--GCTCTCGC-----GCGCGA-CGAGAT-CT-GCGCGNGACT-T-GAGCTCAGGGGAA-TCGCGTCACACCAT-AACAAACCGCAGTGGTGCTTCTGACAGTAGTTAAT----TACAACAAAGTTACATAAAACAGCCATGAAAAGAAAGAAAACAATACAAGATATGAAAGAAAA-TAAAAAA
Reference ( gi|120145 ) : ATTCTTCAATTCGAAAAGGTGAAATCTC--ACTCTCGT-----GCGTGA-CGAGAT-TT-GTGCGTGACT-T-GAGCTCAGGGGAA-TCGCGTCACACCAT-AACAAACCGCAGTGGTGTTTCTGACAGTAGTTAAT----TACAACAAAGTTACATAAAACAGCCATGAAAAGAAAGAAAACAATACAAGATATGAAAGAAAA-TAAAAAA
gi|120146 : ATTCTCTAATTCGAAAAGGTGAAATCTC--ACTCTCGT-----GCGTGA-CGAGAT-CT-TTGCGTGACT-T-AAGCTCAGGGGAA-TCGCGTCACACCAT-AACAAACCGCAGTGGTGTTTCTGACAGTAGTTAAT----TACAACAAAGTAACATAAAACAGCCATGAAAAGAAAGAAAACAATACAAGATATGAAAGAAAA-TAAAAAA
gi|120147 : ATTCTCCAATTCGAAAAGGTGAAATCTC--GCTCTCGT-----GCGTGA-CGAGAT-CT-GTGCGTGACT-T-GAGCTCAGGGCAA-TCGCGTCACACCAT-AACAAACCGCAGTGGTGCTTCTGACAGTAGTTAAT----TACAACAAAGTTACATAAAACAGCCATAAAAAGAAAGAAAACAATGCAAGATATGAAAGAAAA-GAAAAAA
gi|120148 : ATTCTCCAATTCAAAAAGGTGAAATCTC--GCTCTCGT-----GCGTGA-CGAGAT-CT-GTGCGTGACT-T-GAGCTCAGGGGAA-TCGCGTTACACCAT-AACAAACCGCAGTGGTGCTTTTGACAGTAGTTAAA----TACAACAAAGTTACATAAAACAGCCATTAAAAGAAAGAAAACAATACAAGATATGAAAGAAAA-TAAAAAA
gi|120149 : ATTCTCCAATTCGAAAAGGTGAAAATTC--GCTCTCGT-----GCGTGA-CGAGAT-CT-GTGCGTGACT-T-GAGCTCGGGGGAA-TCGCGTCACACCAT-AACAAACCGCAGTAGTGCTTCTGACAGTAGTTAATTATGTACAACAAAGTTACATAAAACAGCCATAAAAAGAAAGAAAAATATACAAGATATGAAAGAAAA-TAAAAAA
gi|120150 : ATTCTCCAATTCGAAAAGGTGAAATCTC--ACGCTCGT-----GCGTGA-CGAGAT-CT-GTGATTGACT-T-GAGCTCAGGGGAA-TCGCGTCACACCAT-AACAAACCGCAGT-GT-TTTCTGACAGTAGAAAAT----TACAACAAAGTTACATAAAACAGCCATGAAAAGAAAGAAAATAATACAAGACATGAAAGAAAA-TAAAAAA
gi|120151 : ATTCTCCAATTCGAAAAGGTGAAATCTC--GCTCTCGT-----ACGTGA-CGAGAT-CT-GTGCGTGACT-T-GAGCTCAGGGGAA-TCGCGTCACACCAT-AACAAACTGCAGTGGTGTTTCTGACAGTAGTTAA-----TACAACAAAGTTACAAAAAACAGCCAT---------GAAAACAATACAAGATATGAAAGAAAA--AAAAA
gi|120152 : ATTCTCCAATTCGAAAAGGTGAAATCTC--GCTCTCGT-----TTGTGA-CGAGAT-CT-GTACGTGACT-T-GAGCTCAGGGGAA-TCGCGTCACACCAT-AACAAACCGCAGTGGTGCTTCTGACAGTAATTAAT----TACAACAAAGTT-------ACA--------------------AATACAAGATATGAAAGAAAA-AAAAAAA
gi|120153 : ATTCTCCAATTCGAAAAGGTGAAATCTC--ACTCTCGC-----GTGTGA-TGAAAT-CT-GTACGTGACT-T-GAGCTCAGGGGAA-TCGCATCACAACATAAACAAACTGCAATGATGTTTCTGACAGTAGTTAAT----TACAGCA------------------ATGAAAAGAAAGTAAACAATACAAGATACGAAAGAAAATTAAAAAAagtttctcatgataaaataaaat
gi|120154 : ATTCTCCAATTCGAAA--------TCTC--ACTCTCGT-----GCGTGA-CGAGAT-CT-GTGCGTGACT-T-GAGCTCAGGGGAA-TCGCGTCATACCAT-AACAAACCGCAGTGATGTTTCTGACAGTAGTTAAT----TACA
gi|120156 : TTCGAAAACCCGAATTCTC--G-TCGCGT-----GCGAGAGCGAGAT-TTCGTACGAGACTAT-GAGCTCAGGGGAATTCGTTTCAC
gi|120157 : TTCGAAATCCCGAATTCTC--G-TCGCGT-----GCGAGAGCGAGAT-TTCGCCCGAGACTAT-GAGCTCAGGGGAA-TT-CGTTTCACC
gi|120158 : TTCGAAATCCCGAATTCT---AGTCGCGT-----GCGAGAGCGAGAT-TTCGCGCGAGACTAT-GAGCTCAGGAGAA-TT-CGTTTCACC
gi|120155 : TTCGAAATCCCGAATTCTC--G-TCGCGT-----GCGAGAGCGAGAT-TTCGCGCGAGACT-TTGAGCTCTGGGGAA-TT-CGTTTCACC
gi|120157 : GGCGAAATCTC--GCTCTCGC-----ACGCGA-CGAGAA-TT----CGGGATT-T-
gi|120160 : ttcgGTGATATCTC--GCTCTCGC-----ACGCGA-CGAGAT-TT-cgagactatgagctcaggggaattcgtttcacc
gi|120159 : GCGAAATCTC--GCTCTCGC-----ATTCGA-CGAGAA-TT----CGGGATT-T-gcgagactatgagctcaggggaattcgtctcacc
gi|120158 : gGCGAAATCTC--GCTCTCGC-----ACGCGA-CTAGAA-TT----CGGGATT-T-gcgagactatgagctcaggggaattcgtttcacc
gi|120155 : ttcgGCGAAATCTC--GCTCTCGC-----ACGCGA-CGAGAA-TT----CGGGATT-T-gcgagactatgagctcaggagaattcgtttcacc
gi|120156 : ttcgGAAATCTC--GCTCTCGC-----ACGCGA-CGAGAA-TT-gcgagactttgagctctggggaattcgtttcacc
gi|120159 : ttcgaaaacccgGAAATCCCGAATTCTCGTCGAATGCGAGAGCGAGAT-TTCGCGCGAGACTAT-GAGCTCAGGGGAA-TT-CGTTTCACCgtacgagactatgagctcaggggaattcgtttcac
gi|120160 : AAATCTC--G-TCGCGT-----GCGAGAGCGAGATATC-ACGCGAGACTAT-GAGCTCAGGGGAA-TT-CGTCTCACC
Alignments
lowQualScore : 111 222 1 1
lowQualScore : 2 111 444 2 33 666 5 1 1 2 2 2 5 4 0 8888 2 4 1 0 9999 4
lowQualScore : . ... ... . .. ... . . . . . . . . . .... . . . . .... .
lowQualScore : 1 444 444 5 44 222 0 0 0 5 5 5 6 0 5 5555 0 4 9 1 4444 4
consensus : ATTCTCCAATTCGAAAAGGCGAAATCTCG--CTCT---CG-CG--CGCGAGAGCGAGATCTCGCGCGTGACT-T-GAGCTCAGGGGAA-TCGCGTCACACCAT-AACAAACCGCAGTGGTGCTTCTGACAGTAGTTAAT----TACAACAAAGTTACATAAAAC-AGCCATGAAAAGAAAGAAAACAATACAAGAT----ATGAAAGAAAA-TAAAAAA
Reference ( family-925 ) : ATTCTCCAATTCGAAAAGGCGAAATCTCG--CTCT---CG-CG--CGCGA---CGAGATCT-GCGCGNGACT-T-GAGCTCAGGGGAA-TCGCGTCACACCAT-AACAAACCGCAGTGGTGCTTCTGACAGTAGTTAAT----TACAACAAAGTTACATAAAAC-AGCCATGAAAAGAAAGAAAACAATACAAGAT----ATGAAAGAAAA-TAAAAAA
gi|120145 : ATTCTTCAATTCGAAAAGGTGAAATCTCA--CTCT---CG-TG--CGTGA---CGAGATTT-GTGCGTGACT-T-GAGCTCAGGGGAA-TCGCGTCACACCAT-AACAAACCGCAGTGGTGTTTCTGACAGTAGTTAAT----TACAACAAAGTTACATAAAAC-AGCCATGAAAAGAAAGAAAACAATACAAGAT----ATGAAAGAAAA-TAAAAAA
gi|120146 : ATTCTCTAATTCGAAAAGGTGAAATCTCA--CTCT---CG-TG--CGTGA---CGAGATCT-TTGCGTGACT-T-AAGCTCAGGGGAA-TCGCGTCACACCAT-AACAAACCGCAGTGGTGTTTCTGACAGTAGTTAAT----TACAACAAAGTAACATAAAAC-AGCCATGAAAAGAAAGAAAACAATACAAGAT----ATGAAAGAAAA-TAAAAAA
gi|120147 : ATTCTCCAATTCGAAAAGGTGAAATCTCG--CTCT---CG-TG--CGTGA---CGAGATCT-GTGCGTGACT-T-GAGCTCAGGGCAA-TCGCGTCACACCAT-AACAAACCGCAGTGGTGCTTCTGACAGTAGTTAAT----TACAACAAAGTTACATAAAAC-AGCCATAAAAAGAAAGAAAACAATGCAAGAT----ATGAAAGAAAA-GAAAAAA
gi|120148 : ATTCTCCAATTCAAAAAGGTGAAATCTCG--CTCT---CG-TG--CGTGA---CGAGATCT-GTGCGTGACT-T-GAGCTCAGGGGAA-TCGCGTTACACCAT-AACAAACCGCAGTGGTGCTTTTGACAGTAGTTAAA----TACAACAAAGTTACATAAAAC-AGCCATTAAAAGAAAGAAAACAATACAAGAT----ATGAAAGAAAA-TAAAAAA
gi|120149 : ATTCTCCAATTCGAAAAGGTGAAAATTCG--CTCT---CG-TG--CGTGA---CGAGATCT-GTGCGTGACT-T-GAGCTCGGGGGAA-TCGCGTCACACCAT-AACAAACCGCAGTAGTGCTTCTGACAGTAGTTAATTATGTACAACAAAGTTACATAAAAC-AGCCATAAAAAGAAAGAAAAATATACAAGAT----ATGAAAGAAAA-TAAAAAA
gi|120150 : ATTCTCCAATTCGAAAAGGTGAAATCTCA--CGCT---CG-TG--CGTGA---CGAGATCT-GTGATTGACT-T-GAGCTCAGGGGAA-TCGCGTCACACCAT-AACAAACCGCAGTGTT--TTCTGACAGTAGAAAAT----TACAACAAAGTTACATAAAAC-AGCCATGAAAAGAAAGAAAATAATACAAGAC----ATGAAAGAAAA-TAAAAAA
gi|120151 : ATTCTCCAATTCGAAAAGGTGAAATCTCG--CTCT---CG-TA--CGTGA---CGAGATCT-GTGCGTGACT-T-GAGCTCAGGGGAA-TCGCGTCACACCAT-AACAAACTGCAGTGGTGTTTCTGACAGTAGTTAA-----TACAACAAAGTTACAAAAAAC-AGCCAT---------GAAAACAATACAAGAT----ATGAAAGAAAA--AAAAA
gi|120152 : ATTCTCCAATTCGAAAAGGTGAAATCTCG--CTCT---CG-TT--TGTGA---CGAGATCT-GTACGTGACT-T-GAGCTCAGGGGAA-TCGCGTCACACCAT-AACAAACCGCAGTGGTGCTTCTGACAGTAATTAAT----TACAACAAAGTTACA-AATACAAGATATG-AAAGAAAAAAAA-AA---AAGTTTCTCATG--ATAAAA-TAAAA
gi|120153 : ATTCTCCAATTCGAAAAGGTGAAATCTCA--CTCT---CG-CG--TGTGA---TGAAATCT-GTACGTGACT-T-GAGCTCAGGGGAA-TCGCATCACAACATAAACAAACTGCAATGATGTTTCTGACAGTAGTTAAT----TACAGCA-------------------ATGAAAAGAAAGTAAACAATACAAGAT----ACGAAAGAAAATTAAAAAAt
gi|120154 : ATTCTCCAATTCGAAA--------TCTCA--CTCT---CG-TG--CGTGA---CGAGATCT-GTGCGTGACT-T-GAGCTCAGGGGAA-TCGCGTCATACCAT-AACAAACCGCAGTGATGTTTCTGACAGTAGTTAAT----TACA
gi|120155 : TTCGAAATCCCGAATTCTCG-----T---CG-CG--TGCGAGAGCGAGATTTCGCGCGAGACT-TTGAGCTCTGGGGAA-TT-CGTTTCACC
gi|120156 : TTCGAAAACCCGAATTCTCG-----T---CG-CG--TGCGAGAGCGAGATTTCGTACGAGACTAT-GAGCTCAGGGGAATTCGTTTCAC
gi|120157 : TTCGAAATCCCGAATTCTCG-----T---CG-CG--TGCGAGAGCGAGATTTCGCCCGAGACTAT-GAGCTCAGGGGAA-TT-CGTTTCACC
gi|120158 : CGAAATCCCGAATTCTAGTCG-CG--TGCGAGAGCGAGATTTCGCGCGAGACTAT-GAGCTCAGGAGAA-TT-CGTTTCACC
gi|120159 : ttGAAATCCCGAATTCT---CGTCGAATGCGAGAGCGAGATTTCGCGCGAGACTAT-GAGCTCAGGGGAA-TT-CGTTTCACC
gi|120160 : AAATCTCG-----T---CG-CG--TGCGAGAGCGAGATATCACGCGAGACTAT-GAGCTCAGGGGAA-TT-CGTCTCACC
Alignments
lowQualScore : 111 333 1 1
lowQualScore : 2 111 444 2 33 222 9 1 0 2 2 2 5 4 0 8888 2 4 1 0 9999 4
lowQualScore : . ... ... . .. ... . . . . . . . . . .... . . . . .... .
lowQualScore : 1 444 444 5 44 999 1 0 8 5 5 5 6 0 5 5555 0 4 9 1 4444 4
consensus : ATTCTCCAATTCGAAAAGGCGAAATCTCG--CTCT---CG-CG--CGCGAGAGCGAGATCTCGCGCGTGAC-T-TGAGCTCAGGGGAA-TCGCGTCACACCAT-AACAAACCGCAGTGGTGCTTCTGACAGTAGTTAAT----TACAACAAAGTTACATAAAAC-AGCCATGAAAAGAAAGAAAACAATACAAGAT----ATGAAAGAAAA-TAAAAAA
Reference ( family-925 ) : ATTCTCCAATTCGAAAAGGCGAAATCTCG--CTCT---CG-CG--CGCGAGAGCGAGATCTCGCGCGTGAC-T-TGAGCTCAGGGGAA-TCGCGTCACACCAT-AACAAACCGCAGTGGTGCTTCTGACAGTAGTTAAT----TACAACAAAGTTACATAAAAC-AGCCATGAAAAGAAAGAAAACAATACAAGAT----ATGAAAGAAAA-TAAAAAA
gi|120145 : ATTCTTCAATTCGAAAAGGTGAAATCTCA--CTCT---CG-TG--CGTGA---CGAGATTT-GTGCGTGAC-T-TGAGCTCAGGGGAA-TCGCGTCACACCAT-AACAAACCGCAGTGGTGTTTCTGACAGTAGTTAAT----TACAACAAAGTTACATAAAAC-AGCCATGAAAAGAAAGAAAACAATACAAGAT----ATGAAAGAAAA-TAAAAAA
gi|120146 : ATTCTCTAATTCGAAAAGGTGAAATCTCA--CTCT---CG-TG--CGTGA---CGAGATCTT-TGCGTGAC-T-TAAGCTCAGGGGAA-TCGCGTCACACCAT-AACAAACCGCAGTGGTGTTTCTGACAGTAGTTAAT----TACAACAAAGTAACATAAAAC-AGCCATGAAAAGAAAGAAAACAATACAAGAT----ATGAAAGAAAA-TAAAAAA
gi|120147 : ATTCTCCAATTCGAAAAGGTGAAATCTCG--CTCT---CG-TG--CGTGA---CGAGATCT-GTGCGTGAC-T-TGAGCTCAGGGCAA-TCGCGTCACACCAT-AACAAACCGCAGTGGTGCTTCTGACAGTAGTTAAT----TACAACAAAGTTACATAAAAC-AGCCATAAAAAGAAAGAAAACAATGCAAGAT----ATGAAAGAAAA-GAAAAAA
gi|120148 : ATTCTCCAATTCAAAAAGGTGAAATCTCG--CTCT---CG-TG--CGTGA---CGAGATCT-GTGCGTGAC-T-TGAGCTCAGGGGAA-TCGCGTTACACCAT-AACAAACCGCAGTGGTGCTTTTGACAGTAGTTAAA----TACAACAAAGTTACATAAAAC-AGCCATTAAAAGAAAGAAAACAATACAAGAT----ATGAAAGAAAA-TAAAAAA
gi|120149 : ATTCTCCAATTCGAAAAGGTGAAAATTCG--CTCT---CG-TG--CGTGA---CGAGATCT-GTGCGTGAC-T-TGAGCTCGGGGGAA-TCGCGTCACACCAT-AACAAACCGCAGTAGTGCTTCTGACAGTAGTTAATTATGTACAACAAAGTTACATAAAAC-AGCCATAAAAAGAAAGAAAAATATACAAGAT----ATGAAAGAAAA-TAAAAAA
gi|120150 : ATTCTCCAATTCGAAAAGGTGAAATCTCA--CGCT---CG-TG--CGTGA---CGAGATCT-GTGATTGAC-T-TGAGCTCAGGGGAA-TCGCGTCACACCAT-AACAAACCGCAGTGTT--TTCTGACAGTAGAAAAT----TACAACAAAGTTACATAAAAC-AGCCATGAAAAGAAAGAAAATAATACAAGAC----ATGAAAGAAAA-TAAAAAA
gi|120151 : ATTCTCCAATTCGAAAAGGTGAAATCTCG--CTCT---CG-TA--CGTGA---CGAGATCT-GTGCGTGAC-T-TGAGCTCAGGGGAA-TCGCGTCACACCAT-AACAAACTGCAGTGGTGTTTCTGACAGTAGTTAA-----TACAACAAAGTTACAAAAAAC-AGCCAT---------GAAAACAATACAAGAT----ATGAAAGAAAA--AAAAA
gi|120152 : ATTCTCCAATTCGAAAAGGTGAAATCTCG--CTCT---CG-TT--TGTGA---CGAGATCT-GTACGTGAC-T-TGAGCTCAGGGGAA-TCGCGTCACACCAT-AACAAACCGCAGTGGTGCTTCTGACAGTAATTAAT----TACAACAAAGTTACA-AATACAAGATATG-AAAGAAAAAAAA-AA---AAGTTTCTCATG--ATAAAA-TAAAA
gi|120153 : ATTCTCCAATTCGAAAAGGTGAAATCTCA--CTCT---CG-CG--TGTGA---TGAAATCT-GTACGTGAC-T-TGAGCTCAGGGGAA-TCGCATCACAACATAAACAAACTGCAATGATGTTTCTGACAGTAGTTAAT----TACAGCA-------------------ATGAAAAGAAAGTAAACAATACAAGAT----ACGAAAGAAAATTAAAAAAt
gi|120154 : ATTCTCCAATTCGAAA--------TCTCA--CTCT---CG-TG--CGTGA---CGAGATCT-GTGCGTGAC-T-TGAGCTCAGGGGAA-TCGCGTCATACCAT-AACAAACCGCAGTGATGTTTCTGACAGTAGTTAAT----TACA
gi|120155 : TTCGAAATCCCGAATTCTCG-----T---CG-CG--TGCGAGAGCGAGATTTCGCGCGAGACTT-TGAGCTCTGGGGAA-TT-CGTTTCACC
gi|120156 : TTCGAAAACCCGAATTCTCG-----T---CG-CG--TGCGAGAGCGAGATTTCGTACGAGAC-TATGAGCTCAGGGGAATTCGTTTCAC
gi|120157 : TTCGAAATCCCGAATTCTCG-----T---CG-CG--TGCGAGAGCGAGATTTCGCCCGAGAC-TATGAGCTCAGGGGAA-TT-CGTTTCACC
gi|120158 : CGAAATCCCGAATTCTAGTCG-CG--TGCGAGAGCGAGATTTCGCGCGAGAC-TATGAGCTCAGGAGAA-TT-CGTTTCACC
gi|120159 : ttGAAATCCCGAATTCT---CGTCGAATGCGAGAGCGAGATTTCGCGCGAGAC-TATGAGCTCAGGGGAA-TT-CGTTTCACC
gi|120160 : AAATCTCG-----T---CG-CG--TGCGAGAGCGAGATATCACGCGAGAC-TATGAGCTCAGGGGAA-TT-CGTCTCACC
Alignments
lowQualScore : 111 333 1 1
lowQualScore : 2 111 444 2 33 222 9 1 0 2 2 2 5 4 0 8888 2 4 1 0 9999 4
lowQualScore : . ... ... . .. ... . . . . . . . . . .... . . . . .... .
lowQualScore : 1 444 444 5 44 999 1 0 8 5 5 5 6 0 5 5555 0 4 9 1 4444 4
consensus : ATTCTCCAATTCGAAAAGGCGAAATCTCG--CTCT---CG-CG--CGCGAGAGCGAGATCTCGCGCGTGAC-T-TGAGCTCAGGGGAA-TCGCGTCACACCAT-AACAAACCGCAGTGGTGCTTCTGACAGTAGTTAAT----TACAACAAAGTTACATAAAAC-AGCCATGAAAAGAAAGAAAACAATACAAGAT----ATGAAAGAAAA-TAAAAAA
Reference ( family-925 ) : ATTCTCCAATTCGAAAAGGCGAAATCTCG--CTCT---CG-CG--CGCGAGAGCGAGATCTCGCGCGTGAC-T-TGAGCTCAGGGGAA-TCGCGTCACACCAT-AACAAACCGCAGTGGTGCTTCTGACAGTAGTTAAT----TACAACAAAGTTACATAAAAC-AGCCATGAAAAGAAAGAAAACAATACAAGAT----ATGAAAGAAAA-TAAAAAA
gi|120145 : ATTCTTCAATTCGAAAAGGTGAAATCTCA--CTCT---CG-TG--CGTGA---CGAGATTT-GTGCGTGAC-T-TGAGCTCAGGGGAA-TCGCGTCACACCAT-AACAAACCGCAGTGGTGTTTCTGACAGTAGTTAAT----TACAACAAAGTTACATAAAAC-AGCCATGAAAAGAAAGAAAACAATACAAGAT----ATGAAAGAAAA-TAAAAAA
gi|120146 : ATTCTCTAATTCGAAAAGGTGAAATCTCA--CTCT---CG-TG--CGTGA---CGAGATCTT-TGCGTGAC-T-TAAGCTCAGGGGAA-TCGCGTCACACCAT-AACAAACCGCAGTGGTGTTTCTGACAGTAGTTAAT----TACAACAAAGTAACATAAAAC-AGCCATGAAAAGAAAGAAAACAATACAAGAT----ATGAAAGAAAA-TAAAAAA
gi|120147 : ATTCTCCAATTCGAAAAGGTGAAATCTCG--CTCT---CG-TG--CGTGA---CGAGATCT-GTGCGTGAC-T-TGAGCTCAGGGCAA-TCGCGTCACACCAT-AACAAACCGCAGTGGTGCTTCTGACAGTAGTTAAT----TACAACAAAGTTACATAAAAC-AGCCATAAAAAGAAAGAAAACAATGCAAGAT----ATGAAAGAAAA-GAAAAAA
gi|120148 : ATTCTCCAATTCAAAAAGGTGAAATCTCG--CTCT---CG-TG--CGTGA---CGAGATCT-GTGCGTGAC-T-TGAGCTCAGGGGAA-TCGCGTTACACCAT-AACAAACCGCAGTGGTGCTTTTGACAGTAGTTAAA----TACAACAAAGTTACATAAAAC-AGCCATTAAAAGAAAGAAAACAATACAAGAT----ATGAAAGAAAA-TAAAAAA
gi|120149 : ATTCTCCAATTCGAAAAGGTGAAAATTCG--CTCT---CG-TG--CGTGA---CGAGATCT-GTGCGTGAC-T-TGAGCTCGGGGGAA-TCGCGTCACACCAT-AACAAACCGCAGTAGTGCTTCTGACAGTAGTTAATTATGTACAACAAAGTTACATAAAAC-AGCCATAAAAAGAAAGAAAAATATACAAGAT----ATGAAAGAAAA-TAAAAAA
gi|120150 : ATTCTCCAATTCGAAAAGGTGAAATCTCA--CGCT---CG-TG--CGTGA---CGAGATCT-GTGATTGAC-T-TGAGCTCAGGGGAA-TCGCGTCACACCAT-AACAAACCGCAGTGTT--TTCTGACAGTAGAAAAT----TACAACAAAGTTACATAAAAC-AGCCATGAAAAGAAAGAAAATAATACAAGAC----ATGAAAGAAAA-TAAAAAA
gi|120151 : ATTCTCCAATTCGAAAAGGTGAAATCTCG--CTCT---CG-TA--CGTGA---CGAGATCT-GTGCGTGAC-T-TGAGCTCAGGGGAA-TCGCGTCACACCAT-AACAAACTGCAGTGGTGTTTCTGACAGTAGTTAA-----TACAACAAAGTTACAAAAAAC-AGCCAT---------GAAAACAATACAAGAT----ATGAAAGAAAA--AAAAA
gi|120152 : ATTCTCCAATTCGAAAAGGTGAAATCTCG--CTCT---CG-TT--TGTGA---CGAGATCT-GTACGTGAC-T-TGAGCTCAGGGGAA-TCGCGTCACACCAT-AACAAACCGCAGTGGTGCTTCTGACAGTAATTAAT----TACAACAAAGTTACA-AATACAAGATATG-AAAGAAAAAAAA-AA---AAGTTTCTCATG--ATAAAA-TAAAA
gi|120153 : ATTCTCCAATTCGAAAAGGTGAAATCTCA--CTCT---CG-CG--TGTGA---TGAAATCT-GTACGTGAC-T-TGAGCTCAGGGGAA-TCGCATCACAACATAAACAAACTGCAATGATGTTTCTGACAGTAGTTAAT----TACAGCA-------------------ATGAAAAGAAAGTAAACAATACAAGAT----ACGAAAGAAAATTAAAAAAt
gi|120154 : ATTCTCCAATTCGAAA--------TCTCA--CTCT---CG-TG--CGTGA---CGAGATCT-GTGCGTGAC-T-TGAGCTCAGGGGAA-TCGCGTCATACCAT-AACAAACCGCAGTGATGTTTCTGACAGTAGTTAAT----TACA
gi|120155 : TTCGAAATCCCGAATTCTCG-----T---CG-CG--TGCGAGAGCGAGATTTCGCGCGAGACTT-TGAGCTCTGGGGAA-TT-CGTTTCACC
gi|120156 : TTCGAAAACCCGAATTCTCG-----T---CG-CG--TGCGAGAGCGAGATTTCGTACGAGAC-TATGAGCTCAGGGGAATTCGTTTCAC
gi|120157 : TTCGAAATCCCGAATTCTCG-----T---CG-CG--TGCGAGAGCGAGATTTCGCCCGAGAC-TATGAGCTCAGGGGAA-TT-CGTTTCACC
gi|120158 : CGAAATCCCGAATTCTAGTCG-CG--TGCGAGAGCGAGATTTCGCGCGAGAC-TATGAGCTCAGGAGAA-TT-CGTTTCACC
gi|120159 : ttGAAATCCCGAATTCT---CGTCGAATGCGAGAGCGAGATTTCGCGCGAGAC-TATGAGCTCAGGGGAA-TT-CGTTTCACC
gi|120160 : AAATCTCG-----T---CG-CG--TGCGAGAGCGAGATATCACGCGAGAC-TATGAGCTCAGGGGAA-TT-CGTCTCACC
blockSeqs : T AAT AGT T AA GAG T T T A T G A TATG T A G TCTC T
blockSeqs : T AAT . . . GAG C T . A . G . . T . A . .
blockSeqs : T C . . . GAG C T . A . G . . T . T . .
blockSeqs : T C . . . GAG C T . A . G . . T . A . .
blockSeqs : T C . . . GAG C T . A . G . . T . G . .
blockSeqs : T C . . . GAG C T . . . G . . A . G . .
blockSeqs : T C . . . . C T . . . G . . . . G . .
blockSeqs : T C . . . . . T . . . G . . . . . . .
blockSeqs : C C . . . . . T . . . G . .
blockSeqs : C C . . . . . C . . . G
blockSeqs : C C . . . . . T . . . .
blockSeqs : C . . . . . . C . . . .
blockSeqs : . . . . . . . C . . . .
blockSeqs : . . . . . . C . . . .
blockSeqs : . . . . . . C . . . .
blockSeqCons :
originalCons : ATTCTCCAATTCGAAAAGGCGAAATCTCG--CTCT---CG-CG--CGCGAGAGCGAGATCTCGCGCGTGAC-T-TGAGCTCAGGGGAA-TCGCGTCACACCAT-AACAAACCGCAGTGGTGCTTCTGACAGTAGTTAAT----TACAACAAAGTTACATAAAAC-AGCCATGAAAAGAAAGAAAACAATACAAGAT----ATGAAAGAAAA-TAAAAAA
finalCons : ATTCTCCAATTCGAAAAGGCGAAATCTCG--CTCT---CG-CG--CGCGAGAGCGAGATCTCGCGCGTGAC-T-TGAGCTCAGGGGAA-TCGCGTCACACCAT-AACAAACCGCAGTGGTGCTTCTGACAGTAGTTAAT----TACAACAAAGTTACATAAAAC-AGCCATGAAAAGAAAGAAAACAATACAAGAT----ATGAAAGAAAA-TAAAAAA
Alignments
lowQualScore : 111 333 1 1
lowQualScore : 2 111 444 2 33 222 9 1 0 2 2 2 5 4 0 8888 2 4 1 0 9999 4
lowQualScore : . ... ... . .. ... . . . . . . . . . .... . . . . .... .
lowQualScore : 1 444 444 5 44 999 1 0 8 5 5 5 6 0 5 5555 0 4 9 1 4444 4
consensus : ATTCTCCAATTCGAAAAGGCGAAATCTCG--CTCT---CG-CG--CGCGAGAGCGAGATCTCGCGCGTGAC-T-TGAGCTCAGGGGAA-TCGCGTCACACCAT-AACAAACCGCAGTGGTGCTTCTGACAGTAGTTAAT----TACAACAAAGTTACATAAAAC-AGCCATGAAAAGAAAGAAAACAATACAAGAT----ATGAAAGAAAA-TAAAAAA
Reference ( family-925 ) : ATTCTCCAATTCGAAAAGGCGAAATCTCG--CTCT---CG-CG--CGCGAGAGCGAGATCTCGCGCGTGAC-T-TGAGCTCAGGGGAA-TCGCGTCACACCAT-AACAAACCGCAGTGGTGCTTCTGACAGTAGTTAAT----TACAACAAAGTTACATAAAAC-AGCCATGAAAAGAAAGAAAACAATACAAGAT----ATGAAAGAAAA-TAAAAAA
gi|120145 : ATTCTTCAATTCGAAAAGGTGAAATCTCA--CTCT---CG-TG--CGTGA---CGAGATTT-GTGCGTGAC-T-TGAGCTCAGGGGAA-TCGCGTCACACCAT-AACAAACCGCAGTGGTGTTTCTGACAGTAGTTAAT----TACAACAAAGTTACATAAAAC-AGCCATGAAAAGAAAGAAAACAATACAAGAT----ATGAAAGAAAA-TAAAAAA
gi|120146 : ATTCTCTAATTCGAAAAGGTGAAATCTCA--CTCT---CG-TG--CGTGA---CGAGATCTT-TGCGTGAC-T-TAAGCTCAGGGGAA-TCGCGTCACACCAT-AACAAACCGCAGTGGTGTTTCTGACAGTAGTTAAT----TACAACAAAGTAACATAAAAC-AGCCATGAAAAGAAAGAAAACAATACAAGAT----ATGAAAGAAAA-TAAAAAA
gi|120147 : ATTCTCCAATTCGAAAAGGTGAAATCTCG--CTCT---CG-TG--CGTGA---CGAGATCT-GTGCGTGAC-T-TGAGCTCAGGGCAA-TCGCGTCACACCAT-AACAAACCGCAGTGGTGCTTCTGACAGTAGTTAAT----TACAACAAAGTTACATAAAAC-AGCCATAAAAAGAAAGAAAACAATGCAAGAT----ATGAAAGAAAA-GAAAAAA
gi|120148 : ATTCTCCAATTCAAAAAGGTGAAATCTCG--CTCT---CG-TG--CGTGA---CGAGATCT-GTGCGTGAC-T-TGAGCTCAGGGGAA-TCGCGTTACACCAT-AACAAACCGCAGTGGTGCTTTTGACAGTAGTTAAA----TACAACAAAGTTACATAAAAC-AGCCATTAAAAGAAAGAAAACAATACAAGAT----ATGAAAGAAAA-TAAAAAA
gi|120149 : ATTCTCCAATTCGAAAAGGTGAAAATTCG--CTCT---CG-TG--CGTGA---CGAGATCT-GTGCGTGAC-T-TGAGCTCGGGGGAA-TCGCGTCACACCAT-AACAAACCGCAGTAGTGCTTCTGACAGTAGTTAATTATGTACAACAAAGTTACATAAAAC-AGCCATAAAAAGAAAGAAAAATATACAAGAT----ATGAAAGAAAA-TAAAAAA
gi|120150 : ATTCTCCAATTCGAAAAGGTGAAATCTCA--CGCT---CG-TG--CGTGA---CGAGATCT-GTGATTGAC-T-TGAGCTCAGGGGAA-TCGCGTCACACCAT-AACAAACCGCAGTGTT--TTCTGACAGTAGAAAAT----TACAACAAAGTTACATAAAAC-AGCCATGAAAAGAAAGAAAATAATACAAGAC----ATGAAAGAAAA-TAAAAAA
gi|120151 : ATTCTCCAATTCGAAAAGGTGAAATCTCG--CTCT---CG-TA--CGTGA---CGAGATCT-GTGCGTGAC-T-TGAGCTCAGGGGAA-TCGCGTCACACCAT-AACAAACTGCAGTGGTGTTTCTGACAGTAGTTAA-----TACAACAAAGTTACAAAAAAC-AGCCAT---------GAAAACAATACAAGAT----ATGAAAGAAAA--AAAAA
gi|120152 : ATTCTCCAATTCGAAAAGGTGAAATCTCG--CTCT---CG-TT--TGTGA---CGAGATCT-GTACGTGAC-T-TGAGCTCAGGGGAA-TCGCGTCACACCAT-AACAAACCGCAGTGGTGCTTCTGACAGTAATTAAT----TACAACAAAGTTACA-AATACAAGATATG-AAAGAAAAAAAA-AA---AAGTTTCTCATG--ATAAAA-TAAAA
gi|120153 : ATTCTCCAATTCGAAAAGGTGAAATCTCA--CTCT---CG-CG--TGTGA---TGAAATCT-GTACGTGAC-T-TGAGCTCAGGGGAA-TCGCATCACAACATAAACAAACTGCAATGATGTTTCTGACAGTAGTTAAT----TACAGCA-------------------ATGAAAAGAAAGTAAACAATACAAGAT----ACGAAAGAAAATTAAAAAAt
gi|120154 : ATTCTCCAATTCGAAA--------TCTCA--CTCT---CG-TG--CGTGA---CGAGATCT-GTGCGTGAC-T-TGAGCTCAGGGGAA-TCGCGTCATACCAT-AACAAACCGCAGTGATGTTTCTGACAGTAGTTAAT----TACA
gi|120155 : TTCGAAATCCCGAATTCTCG-----T---CG-CG--TGCGAGAGCGAGATTTCGCGCGAGACTT-TGAGCTCTGGGGAA-TT-CGTTTCACC
gi|120156 : TTCGAAAACCCGAATTCTCG-----T---CG-CG--TGCGAGAGCGAGATTTCGTACGAGAC-TATGAGCTCAGGGGAATTCGTTTCAC
gi|120157 : TTCGAAATCCCGAATTCTCG-----T---CG-CG--TGCGAGAGCGAGATTTCGCCCGAGAC-TATGAGCTCAGGGGAA-TT-CGTTTCACC
gi|120158 : CGAAATCCCGAATTCTAGTCG-CG--TGCGAGAGCGAGATTTCGCGCGAGAC-TATGAGCTCAGGAGAA-TT-CGTTTCACC
gi|120159 : ttGAAATCCCGAATTCT---CGTCGAATGCGAGAGCGAGATTTCGCGCGAGAC-TATGAGCTCAGGGGAA-TT-CGTTTCACC
gi|120160 : AAATCTCG-----T---CG-CG--TGCGAGAGCGAGATATCACGCGAGAC-TATGAGCTCAGGGGAA-TT-CGTCTCACC