lowQualScore : 1 22222222 11 22222222222 111111 11 11 1 11
lowQualScore : 5 8 1 1 1 99999999 00 999 44444444444 222222 4 7 66 2 8 66 0 99999 2 5 33 2 22 2 1 333 3 0 4 55 88888 4 0 66 7 3 77 1 11
lowQualScore : . . . . . ........ .. ... ........... ...... . . .. . . .. . ..... . . .. . .. . . ... . . . .. ..... . . .. . . .. . ..
lowQualScore : 0 0 0 0 0 88888888 22 999 77777777777 888888 4 2 22 9 6 99 6 44444 9 4 99 9 55 9 4 666 0 8 7 66 33333 0 4 66 2 9 99 8 22
consensus : TGCCAGACTGTTTGCA-GACGATTGCCTCCTGTAC---AGATTCAT-ACAATCCACCAG-G----G----ACA-----G-CAAGACTCTN-CAAGATGA-CCT-CAACAATCT---ACA-GANA--TGGG-AAGACA-ACTGGCAGATGTCG-TTCAATCCTGANAAATG-CGAG-----GTNATACGAATCACCANCAAANGNAAACCAC--TCCAATCTCCNTACAAAATACACAACA
Reference ( gi|32020 ) : TGCCAGACTGTTTTCA-GATGATTGCCTCCTGTAC---AGATACAT-ACAATCCACCAG-G----G----ACA-----G-CAAGGCTCTT-CAAGATGA-TCT-CACCAATCT---ACA-GACA--TGGG-AAAACA-ATTGGCAGATGTCA-TTCAATCCTGAGAAATT-TGAG-----GTAATACAAATCACCAACAAACGCAAACCAC--TCCAATCTCCTTACAAGGTACACAACA
gi|32019 : TGCCAGACTGTTTGCA-GACGATTGCCTCCTGTAC---ATATTCAT-TCAATCCACCAG-G----G----ACA-----G-CAAGGCTCTT-CAAGATGA-TCT-CACCAATCT---ACA-GACA--TGGG-AAAACA-ATTGGCAGATGTCA-TTCAAGCCTGAGAACTG-CGAG-----GTAATACGAATCACCCACAAATGTAAACCAC--TCCAATCTCCTTACAAGATACACAACA
gi|32021 : TGACAGACTGTTTGCA-GACGATTGCCTCCTGTAC---AGATGCAT-ACAATCCACCAG-G----G----ACA-----G-CAAGGCTCTT-CAAGATGA-CCT-CACCAATCT---ACA-GACA--TGGG-AAAACA-ATTGGCAGATTTCA-TTCTCTCCTGAGAAATG-TGAG-----GTAATACGAATCACCAGCAAACGTAAACCAC--ACCAATCTCCTTACAAGATTCACATCA
gi|32022 : TGCCAGACTGTTTGCA-GACGACTGCATCCTGTAC---AGATTCAT-ACAACTCACCAA-G----G----ACA-----G-CAAGACTCTT-CAAGATGA-TCT-CACCAATCT---ACA-GACA--TGGGAAAAACA-ATTGACAGATGTCA-TTCAATCCTAAGAAATG-CGAG-----GTAATACGAATCACCAACAAATGTAGACCAC--TCCAATCTCCGTACAAAATACAAAACA
gi|32023 : CAGACTATTCGCAAGTTGACAGCCTGCTATACTGGAGA---AT--CAA---ATCAG-AATGCG----ACT-----GACA---TTCTG-CAGAAAGA-CCT-CAGAAGCCTGGAACA----A--TGGG-AAGCCA-ACTGGCAGATGCAG-TTCAATCC------ATC-TAAGTGCGTGTCATACGAATAAACCGCAAGAGGAAGCC
gi|32026 : CTTTTTGCA-GACGATTGCCTACTCTAC---CGAGTCATCAAAAGC--CCAGAA----G----ACC-----A-CACCACCCTC-CAACAGGA-CCTACAACAA-CT---AGA-GACA--TGGA-CAGATA-CATGGGGTATGCGT-TTTAATGCAAAGAAAT
gi|32029 : ATGATTGTTTTGTTTAC--------CAT-AC---TCACCAG-AAT--G----ACGAAGATG-CCAGACTATTACAACATGA-CCT-CGACAGCCT---TCAAGATT--CGGG-GCAG-G-ACCGGCAGATGTTG-TTCCATC-TGAAGAATTGCAAA-----GTCATACAAATCAGTACCAAATGCAAgc
gi|32024 : CACCAA-G----GTCCTACA-----A-GAAGAC-CTA-CAAGAAGA-CCT-GAACAGACT---CCA-GAAG--TGGG-AAGAAG-ACTGGATGATGTAA-TTCAATCC
gi|32030 : acagtttgccgatggcagcctgttgtataagaaggttcgctctactgctga-----G-CAAGACTCTT-CAAGACAA-CCT-CACTGATCT---ACA-GACA--TTGA-AAAACA-CTTGGCAGAAGTCA-TTAAATCCTGAGAAATG-CGAA-----GTAATACAAATCACCAATAAATGTAAACCTC--TCCAATCTTCATAAAACATACACAACAcagtaagtgctgtgtaaaccgcatcacaaagaa
gi|32025 : -CAAG---CTA-CAAGATGA-TCT-------TCT---TGA-AAGA--TGGG-AAG-CAGACTGGCAGATGTTA-TTTCACCCTGACAAGTG-CAAG-----GTGATTCATATCACCACTAAA
gi|32027 : cttttcgcagacgacacactgttgtatcattctgtccatgcacagtcggaacgactgcgaCTCTC-CCAAATGA-TCT-TAACACCCT---AGA-AAAT--TAGG-AAGAAA-ACTGGTCTATGGAA-TTCAAGGCAGATAAATG-TGAA-----GTCATAAGAAT-AACAA-AAAAGAAAAACACCGTCATATCCCCCTATAAATTACACAATA
gi|32031 : ctctttgcagacgacactatagtgtacctaacaattaatacaatgtctgatccctaaaTCTT-CAAAATGA-TCT-TA-AAACCT----CA-GAAAATTGGG-AAGAAA-ATTGATAGATGGAA-TTCAAAGCAGATAAATG-TGAA-----GTCATAAGAATAACAAAAAGAAGAATACCA---TCATATTCTCTTATAAATTGCACAATA
gi|32032 : CTA-CAAGACGA-TCTTCAA-AATCT---TGA-AAGA--TGGA-AAGCCG-ACTGGCAGATGTCG-TTTCACCCTGACAAGTG-CAAG-----GTGATCCATATGACCACTAAACG
gi|32033 : CTA-CAAGATGGTTTT-CA-AAATCT---AGA-AAGA--TGAG-AAGCCA-ACTGGCATATGTCC-TTTCACACTGCCAAGTG-TGAG-----GTGATTCATATCACCATTAAAAG--AACCAC--T
gi|32034 : AAGATGA-TCTTCAA-AATCT---TGA-AAGA--TTAG-AAACCG-ACTGGCAGATGTCCTTTCAA-CCTGACAAGTG-CGAA-----TTGATTCATATCACCACTAAAAG--AACC
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|32028 ): TTCGCAGATGACAGCCTGTTTTACAGAAGAATCAAATCAGAACGCGACTCTGAGATTCTGCAAGAAGGCATAAGAAGCCTGGAGCAATGGGAAACCGACTGGCAGATGCAATTCAATCCATCCAAGTGCAAAGTCATTCGAATAACCCGCAA
Alignments
lowQualScore : 1111111 222222222222222222222222222222222222222222222222222222222222222222 11111
lowQualScore : 0 4 1111111 3 66 888888888888888888888888888888888888888888888888888888888888888888 44 4444 1 11111 0 88 1 66 444 2 2 2 7777 1 0 1 2 1 1 3 1 4 66 1 11
lowQualScore : . . ....... . .. .................................................................. .. .... . ..... . .. . .. ... . . . .... . . . . . . . . . .. . ..
lowQualScore : 1 0 8888888 6 55 666666666666666666666666666666666666666666666666666666666666666666 66 7777 0 88888 4 00 0 99 444 5 5 5 9999 5 1 0 5 0 1 8 0 5 99 0 44
consensus : TGCCAGACTGTTCGCA-GACGA-----CTGC-CT-NCTGTAC---A----GATTCA---T-ACAAT--C--CA-C---CAG--G----G----A-------CN-----GCAA--GAC--T-CTNCAAGATGACCT-CAACAATCTACAGANA--T---GGG-AAGACA-ACTGGCAGATGT-CG-TTCAATCCTGANAAG-TGCGAGGTNATACGAATCACCANCAAANGNAAACCAC--TCCAATCTCCTTACAAGATACACAACA
Reference ( family-921 ) : TGCCAGACTGTTTGCA-GACGA-----TTGC-CT-CCTGTAC---A----GATTCA---T-ACAAT--C--CA-C---CAG--G----G----A-------CA-----GCAA--GAC--T-CTNCAAGATGACCT-CAACAATCTACAGANA--T---GGG-AAGACA-ACTGGCAGATGT-CG-TTCAATCCTGANAAA-TGCGAGGTNATACGAATCACCANCAAANGNAAACCAC--TCCAATCTCCNTACAAAATACACAACA
gi|32019 : TGCCAGACTGTTTGCA-GACGA-----TTGC-CT-CCTGTAC---A----TATTCA---T-TCAAT--C--CA-C---CAG--G----G----A-------CA-----GCAA--GGC--T-CTTCAAGATGATCT-CACCAATCTACAGACA--T---GGG-AAAACA-ATTGGCAGATGT-CA-TTCAAGCCTGAGAAC-TGCGAGGTAATACGAATCACCCACAAATGTAAACCAC--TCCAATCTCCTTACAAGATACACAACA
gi|32020 : TGCCAGACTGTTTTCA-GATGA-----TTGC-CT-CCTGTAC---A----GATACA---T-ACAAT--C--CA-C---CAG--G----G----A-------CA-----GCAA--GGC--T-CTTCAAGATGATCT-CACCAATCTACAGACA--T---GGG-AAAACA-ATTGGCAGATGT-CA-TTCAATCCTGAGAAA-TTTGAGGTAATACAAATCACCAACAAACGCAAACCAC--TCCAATCTCCTTACAAGGTACACAACA
gi|32021 : TGACAGACTGTTTGCA-GACGA-----TTGC-CT-CCTGTAC---A----GATGCA---T-ACAAT--C--CA-C---CAG--G----G----A-------CA-----GCAA--GGC--T-CTTCAAGATGACCT-CACCAATCTACAGACA--T---GGG-AAAACA-ATTGGCAGATTT-CA-TTCTCTCCTGAGAAA-TGTGAGGTAATACGAATCACCAGCAAACGTAAACCAC--ACCAATCTCCTTACAAGATTCACATCA
gi|32022 : TGCCAGACTGTTTGCA-GACGA-----CTGC-AT-CCTGTAC---A----GATTCA---T-ACAAC--T--CA-C---CAA--G----G----A-------CA-----GCAA--GAC--T-CTTCAAGATGATCT-CACCAATCTACAGACA--T---GGGAAAAACA-ATTGACAGATGT-CA-TTCAATCCTAAGAAA-TGCGAGGTAATACGAATCACCAACAAATGTAGACCAC--TCCAATCTCCGTACAAAATACAAAACA
gi|32023 : CAGACTATTCGCAAGTTGA-----CAGC-CT-GCTATACTGGA----GAATCA-------AAT--C--------------A----G----A-------AT-----GCGACTGACATT-CTGCAGAAAGACCT-CAGAAGCCTGGAACAA--T---GGG-AAGCCA-ACTGGCAGATGC-AG-TTCAATCCATCTAAG-TGCG-TGTCATACGAATAAACCGCAAGAGGAAGCC
gi|32024 : ACAGTTTGCC-GATGG-----CAGC-CT-GTTGTAT---AAGAAGGTTCGCTCT-ACTGC--TGACA-C---CAA--G----GTCCTA-------CA-----AGAA--GAC----CTACAAGAAGACCT-GAACAGACTCCAGAAG--T---GGG-AAGAAG-ACTGGATGATGT-AA-TTCAATCCCAGTAAG-TGCTGTGTAAACCGCATCAC
gi|32025 : CTTTTCGCA-GACGA-----C-ACACT-GTTGTA------------TCA---T-TCTGT--C--CA-TGCACAGTCG----G----AACGACTGCG-----ACAA--G------CTACAAGATGATCT-------TCTTGAAAGA--T---GGG-AAG-CAGACTGGCAGATGT-TA-TTTCACCCTGACAAG-TGCAAGGTGATTCATATCACCACTAAAaaagaa
gi|32026 : CTTTTTGCA-GACGA-----TTGC-CT-ACTCTAC---C----GAGTCA---TCAAAAG--C-----C---CAGA-A----G----A-------CC-----ACAC--CAC--C-CTCCAACAGGACCTACAACAA-CTAGAGACA--T---GGA-CAGATA-CATGGGGTATG--CGTTTTAATGCAAAGAAA-TGC
gi|32027 : CTCTTTGCA-GACGACACTATAGT-GTACCTA-AC---A-----ATTAA---T-ACAATGTC--T----------------G----A-------TC-----CCTA--AAC--T-CTCCCAAATGATCT-TAACACCCTA--GAAAATT---AGG-AAGAAA-ACTGGTCTATGG-AA-TTCAAGGCAGATAAA-TGTGAAGTCATAAGAATAACAA--AAAAGAAAAACACCGTCATATCCCCCTATAAATTACACAATA
gi|32028 : TTCGCA-GATGA-----CAGC-CT-GTTTTAC---A----GA---------AGAAT--C--AAAT---CAG--AACGCG----A-------CT-----CTGA--GAT--T-CTGCAAGAAGGCAT-AAGAAGCCTGGAGCAA--T---GGG-AAACCG-ACTGGCAGATGC-AA-TTCAATCCATCCAAG-TGCAAAGTCATTCGAATAACCCGCAA
gi|32029 : ATGA-----TTGT-TT-TGTTTAC------------CA---T-AC-----T--CA-C---CAG--AAT--G----A-------CGAAGATGCCA--GAC--TATTACAACATGACCT-CGACAGCCTTCA-AGA--TTCGGGG-CAGG---ACCGGCAGATGT-TG-TTCCAT-CTGAAGAATTGCAAAGTCATACAAATCAGTACCAAATGCAA
gi|32030 : -----GCAA--GAC--T-CTTCAAGACAACCT-CACTGATCTACAGACA--T---TGA-AAAACA-CTTGGCAGAAGT-CA-TTAAATCCTGAGAAA-TGCGAAGTAATACAAATCACCAATAAATGTAAACCTC--TCCAATCTTCATAAAACATACACAACA
gi|32031 : --T-CTTCAAAATGATCT-TAA-AACCT-CAGAAAATT---GGG-AAGAAA-ATTGATAGATGG-AA-TTCAAAGCAGATAAA-TGTGAAGTCATAAGAATAACAAAAAGAAGAATACCA---TCATATTCTCTTATAAATTGCACAATA
gi|32032 : -CTACAAGACGATCTTCAA-AATCTTGAAAGA--T---GGA-AAGCCG-ACTGGCAGATGT-CG-TTTCACCCTGACAAG-TGCAAGGTGATCCATATGACCACTAAACG
gi|32033 : -CTACAAGATGGTTTTCAA-AATCTAGAAAGA--T---GAG-AAGCCA-ACTGGCATATGT-CC-TTTCACACTGCCAAG-TGTGAGGTGATTCATATCACCATTAAAAG--AACCAC--T
gi|32034 : AAGATGATCTTCAA-AATCTTGAAAGA--T---TAG-AAACCG-ACTGGCAGATGTCCT-TTCAA-CCTGACAAG-TGCGAATTGATTCATATCACCACTAAAAGAA
Alignments
lowQualScore : 33333333333333333333333333333333333333333333333 11111
lowQualScore : 0 1 4 8 4 4 1 00000000000000000000000000000000000000000000000 7777 999999 44 4444 1 11111 0 88 1 66 444 2 2 2 7777 1 1 1 0 1 1 3 1 4 66 0 11
lowQualScore : . . . . . . . ............................................... .... ...... .. .... . ..... . .. . .. ... . . . .... . . . . . . . . . .. . ..
lowQualScore : 1 2 0 6 0 0 0 11111111111111111111111111111111111111111111111 7777 333333 66 7777 0 88888 4 00 0 99 444 5 5 5 9999 5 6 0 1 0 1 8 0 5 99 3 00
consensus : TGCCAGACTGTTCGCA-GACGACTGC-C-TNCTGTAC---A----GATTCA---T-ACAAT--C--CA-C---CAG---G----G----ACN-----GCGA--GAC--T-CTNCAAGATGACCT-CAACAATCTACAGANA--T---GGG-AAGACA-ACTGGCAGATGT-CG-TTCAATCCTGANAAGTGCGAGGTNATACGAATCACCANCAAANGNAAACCAC--TCCAATCTCCTTACAAGATACACAACA
Reference ( family-921 ) : TGCCAGACTGTTCGCA-GACGACTGC-C-TNCTGTAC---A----GATTCA---T-ACAAT--C--CA-C---CAG---G----G----ACN-----GCAA--GAC--T-CTNCAAGATGACCT-CAACAATCTACAGANA--T---GGG-AAGACA-ACTGGCAGATGT-CG-TTCAATCCTGANAAGTGCGAGGTNATACGAATCACCANCAAANGNAAACCAC--TCCAATCTCCTTACAAGATACACAACA
gi|32019 : TGCCAGACTGTTTGCA-GACGATTGC-C-TCCTGTAC---A----TATTCA---T-TCAAT--C--CA-C---CAG---G----G----ACA-----GCAA--GGC--T-CTTCAAGATGATCT-CACCAATCTACAGACA--T---GGG-AAAACA-ATTGGCAGATGT-CA-TTCAAGCCTGAGAACTGCGAGGTAATACGAATCACCCACAAATGTAAACCAC--TCCAATCTCCTTACAAGATACACAACA
gi|32020 : TGCCAGACTGTTTTCA-GATGATTGC-C-TCCTGTAC---A----GATACA---T-ACAAT--C--CA-C---CAG---G----G----ACA-----GCAA--GGC--T-CTTCAAGATGATCT-CACCAATCTACAGACA--T---GGG-AAAACA-ATTGGCAGATGT-CA-TTCAATCCTGAGAAATTTGAGGTAATACAAATCACCAACAAACGCAAACCAC--TCCAATCTCCTTACAAGGTACACAACA
gi|32021 : TGACAGACTGTTTGCA-GACGATTGC-C-TCCTGTAC---A----GATGCA---T-ACAAT--C--CA-C---CAG---G----G----ACA-----GCAA--GGC--T-CTTCAAGATGACCT-CACCAATCTACAGACA--T---GGG-AAAACA-ATTGGCAGATTT-CA-TTCTCTCCTGAGAAATGTGAGGTAATACGAATCACCAGCAAACGTAAACCAC--ACCAATCTCCTTACAAGATTCACATCA
gi|32022 : TGCCAGACTGTTTGCA-GACGACTGC-A-TCCTGTAC---A----GATTCA---T-ACAAC--T--CA-C---CAA---G----G----ACA-----GCAA--GAC--T-CTTCAAGATGATCT-CACCAATCTACAGACA--T---GGGAAAAACA-ATTGACAGATGT-CA-TTCAATCCTAAGAAATGCGAGGTAATACGAATCACCAACAAATGTAGACCAC--TCCAATCTCCGTACAAAATACAAAACA
gi|32023 : CAGACTATTCGCAAGTTGACAGC-C-TGCTATACTGGA----GAATCA-------AAT--C---------------A----G----AAT-----GCGACTGACATT-CTGCAGAAAGACCT-CAGAAGCCTGGAACAA--T---GGG-AAGCCA-ACTGGCAGATGC-AG-TTCAATCCATCTAAGTGCG-TGTCATACGAATAAACCGCAAGAGGAAGCC
gi|32024 : ACAGTTTGCC-GATGGCAGC-C-TGTTGTAT---AAGAAGGTTCGCTCT-ACTGC--TGACA-C---CAA---G----GTCCTACA-----AGAA--GAC----CTACAAGAAGACCT-GAACAGACTCCAGAAG--T---GGG-AAGAAG-ACTGGATGATGT-AA-TTCAATCCCAGTAAGTGCTGTGTAAACCGCATCAC
gi|32025 : CTTTTCGCA-GACGAC-ACAC-TGTTGTA------------TCA---T-TCTGT--C--CA-TGCACAGTCGGAAC-G----ACT-----GCGA--CAA--G-CTACAAGATGATCT-------TCTTGAAAGA--T---GGG-AAG-CAGACTGGCAGATGT-TA-TTTCACCCTGACAAGTGCAAGGTGATTCATATCACCACTAAAaaagaa
gi|32026 : CTTTTTGCA-GACGATTGC-C-TACTCTAC---C----GAGTCA---TCAAAAG--C-----C---CAGA--A----G----ACC-----ACAC--CAC--C-CTCCAACAGGACCTACAACAA-CTAGAGACA--T---GGA-CAGATA-CATGGGGTATG--CGTTTTAATGCAAAGAAATGC
gi|32027 : CTCTTTGCA-GACGAC-AC-TATAGTGTACCTAAC---AATTAA---T-ACAATGTC--T-----------------G----ATC-----CCTA--AAC--T-CTCCCAAATGATCT-TAACACCCTA--GAAAATT---AGG-AAGAAA-ACTGGTCTATGG-AA-TTCAAGGCAGATAAATGTGAAGTCATAAGAATAACAA--AAAAGAAAAACACCGTCATATCCCCCTATAAATTACACAATA
gi|32028 : TTCGCA-GATGACAGC-C-TGTTTTAC---A----GA---------AGAAT--C--AAAT---CAG---AACGCG----ACT-----CTGA--GAT--T-CTGCAAGAAGGCAT-AAGAAGCCTGGAGCAA--T---GGG-AAACCG-ACTGGCAGATGC-AA-TTCAATCCATCCAAGTGCAAAGTCATTCGAATAACCCGCAA
gi|32029 : CA---T-AC-----T--CA-C---CAG---AAT--G----ACGAAGATGCCA--GAC--TATTACAACATGACCT-CGACAGCCTTCA-AGA--TTCGGGG-CAGG---ACCGGCAGATGT-TG-TTCCATCTGAAGAATTGCAAAGTCATACAAATCAGTACCAAATGCAA
gi|32030 : atgattgttttgtttac-----GCAA--GAC--T-CTTCAAGACAACCT-CACTGATCTACAGACA--T---TGA-AAAACA-CTTGGCAGAAGT-CA-TTAAATCCTGAGAAATGCGAAGTAATACAAATCACCAATAAATGTAAACCTC--TCCAATCTTCATAAAACATACACAACA
gi|32031 : --T-CTTCAAAATGATCT-TAA-AACCT-CAGAAAATT---GGG-AAGAAA-ATTGATAGATGG-AA-TTCAAAGCAGATAAATGTGAAGTCATAAGAATAACAAAAAGAAGAATACCA---TCATATTCTCTTATAAATTGCACAATA
gi|32032 : -CTACAAGACGATCTTCAA-AATCTTGAAAGA--T---GGA-AAGCCG-ACTGGCAGATGT-CG-TTTCACCCTGACAAGTGCAAGGTGATCCATATGACCACTAAACG
gi|32033 : -CTACAAGATGGTTTTCAA-AATCTAGAAAGA--T---GAG-AAGCCA-ACTGGCATATGT-CC-TTTCACACTGCCAAGTGTGAGGTGATTCATATCACCATTAAAAG--AACCAC--T
gi|32034 : AAGATGATCTTCAA-AATCTTGAAAGA--T---TAG-AAACCG-ACTGGCAGATGTCCT-TTCAA-CCTGACAAGTGCGAATTGATTCATATCACCACTAAAAGAA
Alignments
lowQualScore : 33333333333333333333333333333333333333333333333 11111
lowQualScore : 0 1 4 8 4 4 1 00000000000000000000000000000000000000000000000 7777 999999 3 44 4444 1 11111 0 88 1 66 444 2 2 2 7777 1 1 1 0 1 1 3 1 4 66 0 11
lowQualScore : . . . . . . . ............................................... .... ...... . .. .... . ..... . .. . .. ... . . . .... . . . . . . . . . .. . ..
lowQualScore : 1 2 0 6 0 0 0 11111111111111111111111111111111111111111111111 7777 333333 5 66 7777 0 88888 4 00 0 99 444 5 5 5 9999 5 6 0 1 0 1 8 0 5 99 3 00
consensus : TGCCAGACTGTTCGCA-GACGACTGC-C-TNCTGTAC---A----GATTCA---T-ACAAT--C--CA-C---CAG---G----G----ACN-----GCGA--GAC--T-CTNCAAGATGACCT-CAACAATCTACAGANA--T---GGG-AAGACA-ACTGGCAGATGT-CG-TTCAATCCTGANAAGTGCGAGGTNATACGAATCACCANCAAANGNAAACCAC--TCCAATCTCCTTACAAGATACACAACA
Reference ( family-921 ) : TGCCAGACTGTTCGCA-GACGACTGC-C-TNCTGTAC---A----GATTCA---T-ACAAT--C--CA-C---CAG---G----G----ACN-----GCGA--GAC--T-CTNCAAGATGACCT-CAACAATCTACAGANA--T---GGG-AAGACA-ACTGGCAGATGT-CG-TTCAATCCTGANAAGTGCGAGGTNATACGAATCACCANCAAANGNAAACCAC--TCCAATCTCCTTACAAGATACACAACA
gi|32019 : TGCCAGACTGTTTGCA-GACGATTGC-C-TCCTGTAC---A----TATTCA---T-TCAAT--C--CA-C---CAG---G----G----ACA-----GCAA--GGC--T-CTTCAAGATGATCT-CACCAATCTACAGACA--T---GGG-AAAACA-ATTGGCAGATGT-CA-TTCAAGCCTGAGAACTGCGAGGTAATACGAATCACCCACAAATGTAAACCAC--TCCAATCTCCTTACAAGATACACAACA
gi|32020 : TGCCAGACTGTTTTCA-GATGATTGC-C-TCCTGTAC---A----GATACA---T-ACAAT--C--CA-C---CAG---G----G----ACA-----GCAA--GGC--T-CTTCAAGATGATCT-CACCAATCTACAGACA--T---GGG-AAAACA-ATTGGCAGATGT-CA-TTCAATCCTGAGAAATTTGAGGTAATACAAATCACCAACAAACGCAAACCAC--TCCAATCTCCTTACAAGGTACACAACA
gi|32021 : TGACAGACTGTTTGCA-GACGATTGC-C-TCCTGTAC---A----GATGCA---T-ACAAT--C--CA-C---CAG---G----G----ACA-----GCAA--GGC--T-CTTCAAGATGACCT-CACCAATCTACAGACA--T---GGG-AAAACA-ATTGGCAGATTT-CA-TTCTCTCCTGAGAAATGTGAGGTAATACGAATCACCAGCAAACGTAAACCAC--ACCAATCTCCTTACAAGATTCACATCA
gi|32022 : TGCCAGACTGTTTGCA-GACGACTGC-A-TCCTGTAC---A----GATTCA---T-ACAAC--T--CA-C---CAA---G----G----ACA-----GCAA--GAC--T-CTTCAAGATGATCT-CACCAATCTACAGACA--T---GGGAAAAACA-ATTGACAGATGT-CA-TTCAATCCTAAGAAATGCGAGGTAATACGAATCACCAACAAATGTAGACCAC--TCCAATCTCCGTACAAAATACAAAACA
gi|32023 : CAGACTATTCGCAAGTTGACAGC-C-TGCTATACTGGA----GAATCA-------AAT--C---------------A----G----AAT-----GCGACTGACATT-CTGCAGAAAGACCT-CAGAAGCCTGGAACAA--T---GGG-AAGCCA-ACTGGCAGATGC-AG-TTCAATCCATCTAAGTGCG-TGTCATACGAATAAACCGCAAGAGGAAGCC
gi|32024 : ACAGTTTGCC-GATGGCAGC-C-TGTTGTAT---AAGAAGGTTCGCTCT-ACTGC--TGACA-C---CAA---G----GTCCTACA-----AGAA--GAC----CTACAAGAAGACCT-GAACAGACTCCAGAAG--T---GGG-AAGAAG-ACTGGATGATGT-AA-TTCAATCCCAGTAAGTGCTGTGTAAACCGCATCAC
gi|32025 : CTTTTCGCA-GACGAC-ACAC-TGTTGTA------------TCA---T-TCTGT--C--CA-TGCACAGTCGGAAC-G----ACT-----GCGA--CAA--G-CTACAAGATGATCT-------TCTTGAAAGA--T---GGG-AAG-CAGACTGGCAGATGT-TA-TTTCACCCTGACAAGTGCAAGGTGATTCATATCACCACTAAAaaagaa
gi|32026 : CTTTTTGCA-GACGATTGC-C-TACTCTAC---C----GAGTCA---TCAAAAG--C-----C---CAGA--A----G----ACC-----ACAC--CAC--C-CTCCAACAGGACCTACAACAA-CTAGAGACA--T---GGA-CAGATA-CATGGGGTATG--CGTTTTAATGCAAAGAAATGC
gi|32027 : CTCTTTGCA-GACGAC-AC-TATAGTGTACCTAAC---AATTAA---T-ACAATGTC--T-----------------G----ATC-----CCTA--AAC--T-CTCCCAAATGATCT-TAACACCCTA--GAAAATT---AGG-AAGAAA-ACTGGTCTATGG-AA-TTCAAGGCAGATAAATGTGAAGTCATAAGAATAACAA--AAAAGAAAAACACCGTCATATCCCCCTATAAATTACACAATA
gi|32028 : TTCGCA-GATGACAGC-C-TGTTTTAC---A----GA---------AGAAT--C--AAAT---CAG---AACGCG----ACT-----CTGA--GAT--T-CTGCAAGAAGGCAT-AAGAAGCCTGGAGCAA--T---GGG-AAACCG-ACTGGCAGATGC-AA-TTCAATCCATCCAAGTGCAAAGTCATTCGAATAACCCGCAA
gi|32029 : CA---T-AC-----T--CA-C---CAG---AAT--G----ACGAAGATGCCA--GAC--TATTACAACATGACCT-CGACAGCCTTCA-AGA--TTCGGGG-CAGG---ACCGGCAGATGT-TG-TTCCATCTGAAGAATTGCAAAGTCATACAAATCAGTACCAAATGCAA
gi|32030 : atgattgttttgtttac-----GCAA--GAC--T-CTTCAAGACAACCT-CACTGATCTACAGACA--T---TGA-AAAACA-CTTGGCAGAAGT-CA-TTAAATCCTGAGAAATGCGAAGTAATACAAATCACCAATAAATGTAAACCTC--TCCAATCTTCATAAAACATACACAACA
gi|32031 : --T-CTTCAAAATGATCT-TAA-AACCT-CAGAAAATT---GGG-AAGAAA-ATTGATAGATGG-AA-TTCAAAGCAGATAAATGTGAAGTCATAAGAATAACAAAAAGAAGAATACCA---TCATATTCTCTTATAAATTGCACAATA
gi|32032 : -CTACAAGACGATCTTCAA-AATCTTGAAAGA--T---GGA-AAGCCG-ACTGGCAGATGT-CG-TTTCACCCTGACAAGTGCAAGGTGATCCATATGACCACTAAACG
gi|32033 : -CTACAAGATGGTTTTCAA-AATCTAGAAAGA--T---GAG-AAGCCA-ACTGGCATATGT-CC-TTTCACACTGCCAAGTGTGAGGTGATTCATATCACCATTAAAAG--AACCAC--T
gi|32034 : AAGATGATCTTCAA-AATCTTGAAAGA--T---TAG-AAACCG-ACTGGCAGATGTCCT-TTCAA-CCTGACAAGTGCGAATTGATTCATATCACCACTAAAAGAA
blockSeqs : T A T A A C AAGAAGGTTCGCTCTACTGCTGACACCAAG TCCT GAAGAT A CT ATT T ACAAC AC C AT TCG A A G CGT T T G A A A C C CG GG
blockSeqs : T . T . . C TCATTCTGTCCATGCACAGTCGGAAC . A A . TA T CACC AC C AT . . A . CCT T T G A A G C T . GA
blockSeqs : T . T . . C AGATACATACAATCCACCAGG . A A . T T CACC AC C . . . A . CA T T G A A A T T . AA
blockSeqs : C . A . . G AGATGCATACAATCCACCAGG . A G . T G CACC GG A . . . C . CA T A T C A G A G . AT
blockSeqs : T . A . . G AGATTCATACAACTCACCAAG . T A . T A CAGA CC A . . . A . CA T C T A C C A A . CA
blockSeqs : C . T . . G CGAGTCATCAAAAGCCCAGAA . A G . G A GAAC TG G . . . A . AG C T C G T G T C . AT
blockSeqs : T . A . . A CTAACAATTAATACAATGTCT . T A . C C TAAC AG C . . . A . AA T A G C A C T T .
blockSeqs : T . . . . A AGAAGAATCAAATCAGAACGC . C T . T C AAGA GG A . . . C . TA G A T C T A A A
blockSeqs : C . . . . G TGGAGAATCAAATCA . C G . T G CGAC TC A . . . G . AA T A C C A A C A
blockSeqs : . T C . T A CACT AC G . . . A . AA T G G A A C A .
blockSeqs : A . T T TCAA TG C . . . A . TG T T G C A T A
blockSeqs : . T TCAA AG A . . . C . CA A A T G C C
blockSeqs : A TCAA TG G . . . C . AA C T C G T .
blockSeqs : A TAA A G . . . C . CG C T C G T
blockSeqs : . C G . . . . . CC . T C
blockSeqCons :
originalCons : TGCCAGACTGTTCGCA-GACGACTGC-C-TNCTGTAC---A----GATTCA---T-ACAAT--C--CA-C---CAG---G----G----ACN-----GCGA--GAC--T-CTNCAAGATGACCT-CAACAATCTACAGANA--T---GGG-AAGACA-ACTGGCAGATGT-CG-TTCAATCCTGANAAGTGCGAGGTNATACGAATCACCANCAAANGNAAACCAC--TCCAATCTCCTTACAAGATACACAACA
finalCons : TGCCAGACTGTTCGCA-GACGACTGC-C-TNCTGTAC---A----GATTCA---T-ACAAT--C--CA-C---CAG---G----G----ACN-----GCGA--GAC--T-CTNCAAGATGACCT-CAACAATCTACAGANA--T---GGG-AAGACA-ACTGGCAGATGT-CG-TTCAATCCTGANAAGTGCGAGGTNATACGAATCACCANCAAANGNAAACCAC--TCCAATCTCCTTACAAGATACACAACA
Alignments
lowQualScore : 33333333333333333333333333333333333333333333333 11111
lowQualScore : 0 1 4 8 4 4 1 00000000000000000000000000000000000000000000000 7777 999999 3 44 4444 1 11111 0 88 1 66 444 2 2 2 7777 1 1 1 0 1 1 3 1 4 66 0 11
lowQualScore : . . . . . . . ............................................... .... ...... . .. .... . ..... . .. . .. ... . . . .... . . . . . . . . . .. . ..
lowQualScore : 1 2 0 6 0 0 0 11111111111111111111111111111111111111111111111 7777 333333 5 66 7777 0 88888 4 00 0 99 444 5 5 5 9999 5 6 0 1 0 1 8 0 5 99 3 00
consensus : TGCCAGACTGTTCGCA-GACGACTGC-C-TNCTGTAC---A----GATTCA---T-ACAAT--C--CA-C---CAG---G----G----ACN-----GCGA--GAC--T-CTNCAAGATGACCT-CAACAATCTACAGANA--T---GGG-AAGACA-ACTGGCAGATGT-CG-TTCAATCCTGANAAGTGCGAGGTNATACGAATCACCANCAAANGNAAACCAC--TCCAATCTCCTTACAAGATACACAACA
Reference ( family-921 ) : TGCCAGACTGTTCGCA-GACGACTGC-C-TNCTGTAC---A----GATTCA---T-ACAAT--C--CA-C---CAG---G----G----ACN-----GCGA--GAC--T-CTNCAAGATGACCT-CAACAATCTACAGANA--T---GGG-AAGACA-ACTGGCAGATGT-CG-TTCAATCCTGANAAGTGCGAGGTNATACGAATCACCANCAAANGNAAACCAC--TCCAATCTCCTTACAAGATACACAACA
gi|32019 : TGCCAGACTGTTTGCA-GACGATTGC-C-TCCTGTAC---A----TATTCA---T-TCAAT--C--CA-C---CAG---G----G----ACA-----GCAA--GGC--T-CTTCAAGATGATCT-CACCAATCTACAGACA--T---GGG-AAAACA-ATTGGCAGATGT-CA-TTCAAGCCTGAGAACTGCGAGGTAATACGAATCACCCACAAATGTAAACCAC--TCCAATCTCCTTACAAGATACACAACA
gi|32020 : TGCCAGACTGTTTTCA-GATGATTGC-C-TCCTGTAC---A----GATACA---T-ACAAT--C--CA-C---CAG---G----G----ACA-----GCAA--GGC--T-CTTCAAGATGATCT-CACCAATCTACAGACA--T---GGG-AAAACA-ATTGGCAGATGT-CA-TTCAATCCTGAGAAATTTGAGGTAATACAAATCACCAACAAACGCAAACCAC--TCCAATCTCCTTACAAGGTACACAACA
gi|32021 : TGACAGACTGTTTGCA-GACGATTGC-C-TCCTGTAC---A----GATGCA---T-ACAAT--C--CA-C---CAG---G----G----ACA-----GCAA--GGC--T-CTTCAAGATGACCT-CACCAATCTACAGACA--T---GGG-AAAACA-ATTGGCAGATTT-CA-TTCTCTCCTGAGAAATGTGAGGTAATACGAATCACCAGCAAACGTAAACCAC--ACCAATCTCCTTACAAGATTCACATCA
gi|32022 : TGCCAGACTGTTTGCA-GACGACTGC-A-TCCTGTAC---A----GATTCA---T-ACAAC--T--CA-C---CAA---G----G----ACA-----GCAA--GAC--T-CTTCAAGATGATCT-CACCAATCTACAGACA--T---GGGAAAAACA-ATTGACAGATGT-CA-TTCAATCCTAAGAAATGCGAGGTAATACGAATCACCAACAAATGTAGACCAC--TCCAATCTCCGTACAAAATACAAAACA
gi|32023 : CAGACTATTCGCAAGTTGACAGC-C-TGCTATACTGGA----GAATCA-------AAT--C---------------A----G----AAT-----GCGACTGACATT-CTGCAGAAAGACCT-CAGAAGCCTGGAACAA--T---GGG-AAGCCA-ACTGGCAGATGC-AG-TTCAATCCATCTAAGTGCG-TGTCATACGAATAAACCGCAAGAGGAAGCC
gi|32024 : ACAGTTTGCC-GATGGCAGC-C-TGTTGTAT---AAGAAGGTTCGCTCT-ACTGC--TGACA-C---CAA---G----GTCCTACA-----AGAA--GAC----CTACAAGAAGACCT-GAACAGACTCCAGAAG--T---GGG-AAGAAG-ACTGGATGATGT-AA-TTCAATCCCAGTAAGTGCTGTGTAAACCGCATCAC
gi|32025 : CTTTTCGCA-GACGAC-ACAC-TGTTGTA------------TCA---T-TCTGT--C--CA-TGCACAGTCGGAAC-G----ACT-----GCGA--CAA--G-CTACAAGATGATCT-------TCTTGAAAGA--T---GGG-AAG-CAGACTGGCAGATGT-TA-TTTCACCCTGACAAGTGCAAGGTGATTCATATCACCACTAAAaaagaa
gi|32026 : CTTTTTGCA-GACGATTGC-C-TACTCTAC---C----GAGTCA---TCAAAAG--C-----C---CAGA--A----G----ACC-----ACAC--CAC--C-CTCCAACAGGACCTACAACAA-CTAGAGACA--T---GGA-CAGATA-CATGGGGTATG--CGTTTTAATGCAAAGAAATGC
gi|32027 : CTCTTTGCA-GACGAC-AC-TATAGTGTACCTAAC---AATTAA---T-ACAATGTC--T-----------------G----ATC-----CCTA--AAC--T-CTCCCAAATGATCT-TAACACCCTA--GAAAATT---AGG-AAGAAA-ACTGGTCTATGG-AA-TTCAAGGCAGATAAATGTGAAGTCATAAGAATAACAA--AAAAGAAAAACACCGTCATATCCCCCTATAAATTACACAATA
gi|32028 : TTCGCA-GATGACAGC-C-TGTTTTAC---A----GA---------AGAAT--C--AAAT---CAG---AACGCG----ACT-----CTGA--GAT--T-CTGCAAGAAGGCAT-AAGAAGCCTGGAGCAA--T---GGG-AAACCG-ACTGGCAGATGC-AA-TTCAATCCATCCAAGTGCAAAGTCATTCGAATAACCCGCAA
gi|32029 : CA---T-AC-----T--CA-C---CAG---AAT--G----ACGAAGATGCCA--GAC--TATTACAACATGACCT-CGACAGCCTTCA-AGA--TTCGGGG-CAGG---ACCGGCAGATGT-TG-TTCCATCTGAAGAATTGCAAAGTCATACAAATCAGTACCAAATGCAA
gi|32030 : atgattgttttgtttac-----GCAA--GAC--T-CTTCAAGACAACCT-CACTGATCTACAGACA--T---TGA-AAAACA-CTTGGCAGAAGT-CA-TTAAATCCTGAGAAATGCGAAGTAATACAAATCACCAATAAATGTAAACCTC--TCCAATCTTCATAAAACATACACAACA
gi|32031 : --T-CTTCAAAATGATCT-TAA-AACCT-CAGAAAATT---GGG-AAGAAA-ATTGATAGATGG-AA-TTCAAAGCAGATAAATGTGAAGTCATAAGAATAACAAAAAGAAGAATACCA---TCATATTCTCTTATAAATTGCACAATA
gi|32032 : -CTACAAGACGATCTTCAA-AATCTTGAAAGA--T---GGA-AAGCCG-ACTGGCAGATGT-CG-TTTCACCCTGACAAGTGCAAGGTGATCCATATGACCACTAAACG
gi|32033 : -CTACAAGATGGTTTTCAA-AATCTAGAAAGA--T---GAG-AAGCCA-ACTGGCATATGT-CC-TTTCACACTGCCAAGTGTGAGGTGATTCATATCACCATTAAAAG--AACCAC--T
gi|32034 : AAGATGATCTTCAA-AATCTTGAAAGA--T---TAG-AAACCG-ACTGGCAGATGTCCT-TTCAA-CCTGACAAGTGCGAATTGATTCATATCACCACTAAAAGAA