lowQualScore : 1 2222222222 1
lowQualScore : 6 5 33 2 3 1111111111 3 3 1 3 6 0
lowQualScore : . . .. . . .......... . . . . . .
lowQualScore : 0 0 99 4 2 3333333333 3 3 0 3 7 2
consensus : AGAAACTCAGCTGAAAATA--GCCGGGTGTTCAAGTAAGAATAGC--CGGG----GG-AAAAC-CCCGGCCCC-C-GGCTTCTAATGACAGCCCTG
Reference ( gi|3648 ) : AGAAACTTAGCTGAAAGTA--GCCGGGTGTTCAAGAAAGAATAGC--TGGA----GG-AAAAC-CCCGGCCCC-C-GGCTTCTAATTACAGCCCTG
gi|3647 : AGAAACTCAGCTGAAACCA--GCCAGGTGTTTAAGAAA-AATAGC--CAGG----GG-AAAAC-CCAGGCCCC-CTGGCTTCTAATGACAGTCCTG
gi|3646 : AGAAACTCAGCTGAAACCA--GCCAGGTGTTTAAGAAA-AATAGC--CAGG----GG-AAAAC-CCAGGCCCC-CTGGCTTCTAATGACAGTCCTG
gi|3655 : AGAAACTCAGCTGAAAATA--ACCTGGTGTTAAAGTAAGAATAGG--TGG-----GG-GAAAT-CCCGGCCCC-C-GGCTTCTTATTGCAGTCCTG
gi|3650 : AGAAACTCAGCTGAAAATA--GCCGGGTGTTCAAGTAA-AATAGC--CGGG----GGTTAACC-CCCTGCAAC-C-GGCTCCTAATGACAGCCCTG
gi|3651 : AGAAATTCAGCTGAAAATG--GCCAGGTGTTCGAGTATGAATAGC--CGGG----GG-GAAAA-ACCAGCCAC-C-GGCTTGTAATCACAGCCATG
gi|3649 : AAAAACTCAGCTGAAAAAA--GCTTGGTGTTCAAGTAAAAATAGC--CAGAG---GG-AAAAC-CCCGGCCTCAA-GACTTTTCATGACATCCCTG
gi|3653 : AGAAATTCAGCTGAAAATA--GCCGGATGTTCAAGTAAGAAT
gi|3652 : AGAAATTCAGCTGAAAATA--GCCGGATGTTCAAGTAAGAATtgtcatggg
gi|3654 : AGAAATTCAGCTGAAAATA--GCCGGATGTTCAAGTAAGAGTtgtcatggg
gi|3656 : AAACTCAGCTGAAAAAA--GCAAGGTGTTCAAGTAAGAATAGC--CTGG----GG-AAAAC-CCCGACCTC-C-AGCTTCTAGTGACAGCCCTtgtcaaggg
gi|3657 : AACTCAGCTGAAAGTA--GCCAGGAGTTTATGTAAGAATAGC--CTGG----GG-AAAAT-CCCGGCCCC-C-TGCTTCTAATGACTGCCCT
gi|3658 : ACTCAGCTGAAAATG--GCCGGGTGTTCAAGCAAATATGGC--CCGG----GG-GAAACACCAGACACC-C-GGCTTCTAATTACAGCCCTG
gi|3659 : CTCGGATGAAAATATAGACGGGTGTTCAAGGAAGAATAAT--TGGGTGGTGG-GGA---CCAGGCCCC-C-AGATTCTAATGACAGCCCTG
gi|3660 : AAAGTA--GAAGAAT----AAGTAAGAATAGC--CAGG----GG-AAAAT-CCTGGCCCT-T-GGCTTCTAAAGACAGTCCTG
gi|3661 : gaaaAAAATAGCCTTGT------G-AAAAC-TCTGGCCCC-C-GGCTTCTAATGACAGCCCTG
Alignments
lowQualScore : 33 1 44 5555 22 3 0 3 6
lowQualScore : .. . .. .... .. . . . .
lowQualScore : 99 9 88 3333 77 1 2 1 2
consensus : AGAAACTCAGCTGAAAATA--GCCGGGTGTTCAAGTAAGAATAGCC-GGG----GG-AAAAC-CCCGGCCCC-C-GGCTTCTAATGACAGCCCTG
Reference ( family-917 ) : AGAAACTCAGCTGAAAATA--GCCGGGTGTTCAAGTAAGAATAGCC-GGG----GG-AAAAC-CCCGGCCCC-C-GGCTTCTAATGACAGCCCTG
gi|3646 : AGAAACTCAGCTGAAACCA--GCCAGGTGTTTAAG-AAAAATAGCC-AGG----GG-AAAAC-CCAGGCCCC-CTGGCTTCTAATGACAGTCCTG
gi|3647 : AGAAACTCAGCTGAAACCA--GCCAGGTGTTTAAG-AAAAATAGCC-AGG----GG-AAAAC-CCAGGCCCC-CTGGCTTCTAATGACAGTCCTG
gi|3648 : AGAAACTTAGCTGAAAGTA--GCCGGGTGTTCAAGAAAGAATAGCT-GGA----GG-AAAAC-CCCGGCCCC-C-GGCTTCTAATTACAGCCCTG
gi|3649 : AAAAACTCAGCTGAAAAAA--GCTTGGTGTTCAAGTAAAAATAGCCAGAG----GG-AAAAC-CCCGGCCTCAA-GACTTTTCATGACATCCCTG
gi|3650 : AGAAACTCAGCTGAAAATA--GCCGGGTGTTCAAGTAA-AATAGCC-GGG----GGTTAACC-CCCTGCAAC-C-GGCTCCTAATGACAGCCCTG
gi|3651 : AGAAATTCAGCTGAAAATG--GCCAGGTGTTCGAGTATGAATAGCC-GGG----GG-GAAAA-ACCAGCCAC-C-GGCTTGTAATCACAGCCATG
gi|3652 : AGAAATTCAGCTGAAAATA--GCCGGATGTTCAAGTAAGAATTGTC-ATG----GG-
gi|3653 : AGAAATTCAGCTGAAAATA--GCCGGATGTTCAAGTAAGAATTGTC-ATG----GG-
gi|3654 : AGAAATTCAGCTGAAAATA--GCCGGATGTTCAAGTAAGAGTTGTC-AAG----GG-
gi|3655 : AGAAACTCAGCTGAAAATA--ACCTGGTGTTAAAGTAAGAATAGGT-GGG----GG--AAAT-CCCGGCCCC-C-GGCTTCTTATTGCAGTCCTG
gi|3656 : AAACTCAGCTGAAAAAA--GCAAGGTGTTCAAGTAAGAATAGCC-TGG----GG-AAAAC-CCCGACCTC-C-AGCTTCTAGTGACAGCCCT
gi|3657 : AACTCAGCTGAAAGTA--GCCAGGAGTTTATGTAAGAATAGCC-TGG----GG-AAAAT-CCCGGCCCC-C-TGCTTCTAATGACTGCCCT
gi|3658 : ACTCAGCTGAAAATG--GCCGGGTGTTCAAGCAAATATGGCC-CGG----GG-GAAACACCAGACACC-C-GGCTTCTAATTACAGCCCTG
gi|3659 : CTCGGATGAAAATATAGACGGGTGTTCAAGGAAGAATAATT-GGGTGGTGG-GGA---CCAGGCCCC-C-AGATTCTAATGACAGCCCTG
gi|3660 : AAGTAAGAATAGCC-AGG----GG-AAAAT-CCTGGCCCT-T-GGCTTCTAAAGACAGTCCTG
gi|3661 : gaaaaaagtagaagaatAAAATAGCC-TTG----TG-AAAAC-TCTGGCCCC-C-GGCTTCTAATGACAGCCCTG
Alignments
lowQualScore : 33 1 44 5555 22 3 0 3 6
lowQualScore : .. . .. .... .. . . . .
lowQualScore : 99 9 88 3333 77 1 2 1 2
consensus : AGAAACTCAGCTGAAAATA--GCCGGGTGTTCAAGTAAGAATAGCC-GGG----GG-AAAAC-CCCGGCCCC-C-GGCTTCTAATGACAGCCCTG
Reference ( family-917 ) : AGAAACTCAGCTGAAAATA--GCCGGGTGTTCAAGTAAGAATAGCC-GGG----GG-AAAAC-CCCGGCCCC-C-GGCTTCTAATGACAGCCCTG
gi|3646 : AGAAACTCAGCTGAAACCA--GCCAGGTGTTTAAG-AAAAATAGCC-AGG----GG-AAAAC-CCAGGCCCC-CTGGCTTCTAATGACAGTCCTG
gi|3647 : AGAAACTCAGCTGAAACCA--GCCAGGTGTTTAAG-AAAAATAGCC-AGG----GG-AAAAC-CCAGGCCCC-CTGGCTTCTAATGACAGTCCTG
gi|3648 : AGAAACTTAGCTGAAAGTA--GCCGGGTGTTCAAGAAAGAATAGCT-GGA----GG-AAAAC-CCCGGCCCC-C-GGCTTCTAATTACAGCCCTG
gi|3649 : AAAAACTCAGCTGAAAAAA--GCTTGGTGTTCAAGTAAAAATAGCCAGAG----GG-AAAAC-CCCGGCCTCAA-GACTTTTCATGACATCCCTG
gi|3650 : AGAAACTCAGCTGAAAATA--GCCGGGTGTTCAAGTAA-AATAGCC-GGG----GGTTAACC-CCCTGCAAC-C-GGCTCCTAATGACAGCCCTG
gi|3651 : AGAAATTCAGCTGAAAATG--GCCAGGTGTTCGAGTATGAATAGCC-GGG----GG-GAAAA-ACCAGCCAC-C-GGCTTGTAATCACAGCCATG
gi|3652 : AGAAATTCAGCTGAAAATA--GCCGGATGTTCAAGTAAGAATTGTC-ATG----GG-
gi|3653 : AGAAATTCAGCTGAAAATA--GCCGGATGTTCAAGTAAGAATTGTC-ATG----GG-
gi|3654 : AGAAATTCAGCTGAAAATA--GCCGGATGTTCAAGTAAGAGTTGTC-AAG----GG-
gi|3655 : AGAAACTCAGCTGAAAATA--ACCTGGTGTTAAAGTAAGAATAGGT-GGG----GG--AAAT-CCCGGCCCC-C-GGCTTCTTATTGCAGTCCTG
gi|3656 : AAACTCAGCTGAAAAAA--GCAAGGTGTTCAAGTAAGAATAGCC-TGG----GG-AAAAC-CCCGACCTC-C-AGCTTCTAGTGACAGCCCT
gi|3657 : AACTCAGCTGAAAGTA--GCCAGGAGTTTATGTAAGAATAGCC-TGG----GG-AAAAT-CCCGGCCCC-C-TGCTTCTAATGACTGCCCT
gi|3658 : ACTCAGCTGAAAATG--GCCGGGTGTTCAAGCAAATATGGCC-CGG----GG-GAAACACCAGACACC-C-GGCTTCTAATTACAGCCCTG
gi|3659 : CTCGGATGAAAATATAGACGGGTGTTCAAGGAAGAATAATT-GGGTGGTGG-GGA---CCAGGCCCC-C-AGATTCTAATGACAGCCCTG
gi|3660 : AAGTAAGAATAGCC-AGG----GG-AAAAT-CCTGGCCCT-T-GGCTTCTAAAGACAGTCCTG
gi|3661 : gaaaaaagtagaagaatAAAATAGCC-TTG----TG-AAAAC-TCTGGCCCC-C-GGCTTCTAATGACAGCCCTG
blockSeqs : TA A AG TGGT TT A A T
blockSeqs : . T A . A . . .
blockSeqs : . T G . A . . .
blockSeqs : . T G . A . . .
blockSeqs : . T G . G . . .
blockSeqs : . T A . A . . .
blockSeqs : . T A . A . . .
blockSeqs : . T A . G . . .
blockSeqs : . T G . G . . .
blockSeqs : . T T . A . . .
blockSeqs : . C T . A . . .
blockSeqs : . G C . . . . .
blockSeqs : . T G .
blockSeqs : . A .
blockSeqs : T .
blockSeqCons :
originalCons : AGAAACTCAGCTGAAAATA--GCCGGGTGTTCAAGTAAGAATAGCC-GGG----GG-AAAAC-CCCGGCCCC-C-GGCTTCTAATGACAGCCCTG
finalCons : AGAAACTCAGCTGAAAATA--GCCGGGTGTTCAAGTAAGAATAGCC-GGG----GG-AAAAC-CCCGGCCCC-C-GGCTTCTAATGACAGCCCTG
Alignments
lowQualScore : 33 1 44 5555 22 3 0 3 6
lowQualScore : .. . .. .... .. . . . .
lowQualScore : 99 9 88 3333 77 1 2 1 2
consensus : AGAAACTCAGCTGAAAATA--GCCGGGTGTTCAAGTAAGAATAGCC-GGG----GG-AAAAC-CCCGGCCCC-C-GGCTTCTAATGACAGCCCTG
Reference ( family-917 ) : AGAAACTCAGCTGAAAATA--GCCGGGTGTTCAAGTAAGAATAGCC-GGG----GG-AAAAC-CCCGGCCCC-C-GGCTTCTAATGACAGCCCTG
gi|3646 : AGAAACTCAGCTGAAACCA--GCCAGGTGTTTAAG-AAAAATAGCC-AGG----GG-AAAAC-CCAGGCCCC-CTGGCTTCTAATGACAGTCCTG
gi|3647 : AGAAACTCAGCTGAAACCA--GCCAGGTGTTTAAG-AAAAATAGCC-AGG----GG-AAAAC-CCAGGCCCC-CTGGCTTCTAATGACAGTCCTG
gi|3648 : AGAAACTTAGCTGAAAGTA--GCCGGGTGTTCAAGAAAGAATAGCT-GGA----GG-AAAAC-CCCGGCCCC-C-GGCTTCTAATTACAGCCCTG
gi|3649 : AAAAACTCAGCTGAAAAAA--GCTTGGTGTTCAAGTAAAAATAGCCAGAG----GG-AAAAC-CCCGGCCTCAA-GACTTTTCATGACATCCCTG
gi|3650 : AGAAACTCAGCTGAAAATA--GCCGGGTGTTCAAGTAA-AATAGCC-GGG----GGTTAACC-CCCTGCAAC-C-GGCTCCTAATGACAGCCCTG
gi|3651 : AGAAATTCAGCTGAAAATG--GCCAGGTGTTCGAGTATGAATAGCC-GGG----GG-GAAAA-ACCAGCCAC-C-GGCTTGTAATCACAGCCATG
gi|3652 : AGAAATTCAGCTGAAAATA--GCCGGATGTTCAAGTAAGAATTGTC-ATG----GG-
gi|3653 : AGAAATTCAGCTGAAAATA--GCCGGATGTTCAAGTAAGAATTGTC-ATG----GG-
gi|3654 : AGAAATTCAGCTGAAAATA--GCCGGATGTTCAAGTAAGAGTTGTC-AAG----GG-
gi|3655 : AGAAACTCAGCTGAAAATA--ACCTGGTGTTAAAGTAAGAATAGGT-GGG----GG--AAAT-CCCGGCCCC-C-GGCTTCTTATTGCAGTCCTG
gi|3656 : AAACTCAGCTGAAAAAA--GCAAGGTGTTCAAGTAAGAATAGCC-TGG----GG-AAAAC-CCCGACCTC-C-AGCTTCTAGTGACAGCCCT
gi|3657 : AACTCAGCTGAAAGTA--GCCAGGAGTTTATGTAAGAATAGCC-TGG----GG-AAAAT-CCCGGCCCC-C-TGCTTCTAATGACTGCCCT
gi|3658 : ACTCAGCTGAAAATG--GCCGGGTGTTCAAGCAAATATGGCC-CGG----GG-GAAACACCAGACACC-C-GGCTTCTAATTACAGCCCTG
gi|3659 : CTCGGATGAAAATATAGACGGGTGTTCAAGGAAGAATAATT-GGGTGGTGG-GGA---CCAGGCCCC-C-AGATTCTAATGACAGCCCTG
gi|3660 : AAGTAAGAATAGCC-AGG----GG-AAAAT-CCTGGCCCT-T-GGCTTCTAAAGACAGTCCTG
gi|3661 : gaaaaaagtagaagaatAAAATAGCC-TTG----TG-AAAAC-TCTGGCCCC-C-GGCTTCTAATGACAGCCCTG