lowQualScore : 111111
lowQualScore : 3 8 999 333333 5 444 2 5
lowQualScore : . . ... ...... . ... . .
lowQualScore : 1 4 333 333333 6 777 7 5
consensus : TAAA-ATCAATTTGCTTATAAT---AG------TTCATTATTATGACATTTT---CTCCATGAAA-TAAAAATT
Reference ( gi|5237 ) : TAAA-ATCAATTTGCTTGTAAT---AG------TTCATTATTATAACATTTT---CTCCATGAAA-TAGAAATT
gi|5238 : TAAA-ATCAATTTGCTTATAAA---AG------TTCATCATTATGATATTTT---CTCCATGAAA-TAAAAATT
gi|5236 : TAAA-ATCATTTTGTTTATAAT---AG------TTCATTATTATGACATTTT---CTCCATGAAATTAGAA
gi|5240 : TAAA-ATCAATTTGTTAACAAT---AG------TTCATTATTATGACATTTT---CTCCATAAAA-TAAAAATTtt
gi|5241 : TAAA-ATCAATTTGCTTATAAA---AG------TTCATTATTGTGACATTTT---CACCATGAGA-TAAAAATT
gi|5246 : TATA-ATCAATTTGCTTATAAT---AG------TTCATAATTACAATATTTT---CTCTATGATA-TAAAAAT
gi|5239 : TGAA-ATGATTTTGCTTATAAT---AA------TTCATTATGACGACATTTT---CTCCATGAAA-TAAAAATT
gi|5243 : TAAA-ATCAATTTACTTACAAT---AGATCTAGTTCATTATCATGACGTTTT---CTCCATGAAA-CAAAAATT
gi|5244 : TAAA-ATCAATTTGGTAATGAT---AG------TT---TATTATGACATTTT---CTCCATGAAA-TAAAAATT
gi|5245 : TAAT-ATCAATTTGCTT---AT---TG------TTCATTATTA-GACATTTT---CTTCATGAAA-TAAAAATT
gi|5242 : TAAACATCATTTTGCTTATAATAATAG------TTCATTACTATGACATTTT---CGCCATGAAA-TAAAGA
gi|5247 : TAAA-ATTAATATGCTTATAAT---AGCTAG--TTCATTATTG--ACATTTT---CTCCATGAAA-
gi|5248 : TGAA-ATAAATTTGCCTATAATTAAAG------TTCACTATTATGACGTTTTTTTCTACATGAAA-TAAAAATTgaa
gi|5249 : AAA-ATCAATTTGCTTATAAT---GG------TTCATTATTATGACATTTT---CTCTATGAAA-TAAAAATT
gi|5250 : TTTGCATATAAC---AG------TTTATTATTATGTCATTTT---CTCCATGAAA-TAAAAATT
gi|5251 : tcttAAT---AA------TTCATTATTATGACATTTT---CTCCATAAAA-TACAAATT
Alignments
lowQualScore : 111111
lowQualScore : 2 444 444 222222 444
lowQualScore : . ... ... ...... ...
lowQualScore : 9 444 444 555555 444
consensus : TAAA-ATCAATTTGCTTATAA---T---AG------TTCATTATTATGACATTTT---CTCCATGAAATAAAAATT
Reference ( family-907 ) : TAAA-ATCAATTTGCTTATAA---T---AG------TTCATTATTATGACATTTT---CTCCATGAAATAAAAATT
gi|5236 : TAAA-ATCATTTTGTTTATAA---T---AG------TTCATTATTATGACATTTT---CTCCATGAAATTAGAATT
gi|5237 : TAAA-ATCAATTTGCTTGTAA---T---AG------TTCATTATTATAACATTTT---CTCCATGAAATAGAAATT
gi|5238 : TAAA-ATCAATTTGCTTATAA---A---AG------TTCATCATTATGATATTTT---CTCCATGAAATAAAAATT
gi|5239 : TGAA-ATGATTTTGCTTATAA---T---AA------TTCATTATGACGACATTTT---CTCCATGAAATAAAAATT
gi|5240 : TAAA-ATCAATTTGTTAACAA---T---AG------TTCATTATTATGACATTTT---CTCCATAAAATAAAAATT
gi|5241 : TAAA-ATCAATTTGCTTATAA---A---AG------TTCATTATTGTGACATTTT---CACCATGAGATAAAAATT
gi|5242 : TAAACATCATTTTGCTTATAATAAT---AG------TTCATTACTATGACATTTT---CGCCATGAAATAAAGA
gi|5243 : TAAA-ATCAATTTACTTACAA---T---AGATCTAGTTCATTATCATGACGTTTT---CTCCATGAAACAAAAATT
gi|5244 : TAAA-ATCAATTTGGTAATGA---T---AG------TT---TATTATGACATTTT---CTCCATGAAATAAAAATT
gi|5245 : TAAT-ATCAATTTGCTTAT-----T----G------TTCATTATTA-GACATTTT---CTTCATGAAATAAAAATT
gi|5246 : TATA-ATCAATTTGCTTATAA---T---AG------TTCATAATTACAATATTTT---CTCTATGATATAAAAAT
gi|5247 : TAAA-ATTAATATGCTTATAA---T---AGCTAG--TTCATTATT--GACATTTT---CTCCATGAAAGAA
gi|5248 : TGAA-ATAAATTTGCCTATAA---TTAAAG------TTCACTATTATGACGTTTTTTTCTACATGAAATAAAAATT
gi|5249 : AAA-ATCAATTTGCTTATAA---T---GG------TTCATTATTATGACATTTT---CTCTATGAAATAAAAATT
gi|5250 : TTTGCATATAA---C---AG------TTTATTATTATGTCATTTT---CTCCATGAAATAAAAATT
gi|5251 : tcttAA---T---AA------TTCATTATTATGACATTTT---CTCCATAAAATACAAATT
Alignments
lowQualScore : 111111
lowQualScore : 2 444 444 222222 444
lowQualScore : . ... ... ...... ...
lowQualScore : 9 444 444 555555 444
consensus : TAAA-ATCAATTTGCTTATAA---T---AG------TTCATTATTATGACATTTT---CTCCATGAAATAAAAATT
Reference ( family-907 ) : TAAA-ATCAATTTGCTTATAA---T---AG------TTCATTATTATGACATTTT---CTCCATGAAATAAAAATT
gi|5236 : TAAA-ATCATTTTGTTTATAA---T---AG------TTCATTATTATGACATTTT---CTCCATGAAATTAGAATT
gi|5237 : TAAA-ATCAATTTGCTTGTAA---T---AG------TTCATTATTATAACATTTT---CTCCATGAAATAGAAATT
gi|5238 : TAAA-ATCAATTTGCTTATAA---A---AG------TTCATCATTATGATATTTT---CTCCATGAAATAAAAATT
gi|5239 : TGAA-ATGATTTTGCTTATAA---T---AA------TTCATTATGACGACATTTT---CTCCATGAAATAAAAATT
gi|5240 : TAAA-ATCAATTTGTTAACAA---T---AG------TTCATTATTATGACATTTT---CTCCATAAAATAAAAATT
gi|5241 : TAAA-ATCAATTTGCTTATAA---A---AG------TTCATTATTGTGACATTTT---CACCATGAGATAAAAATT
gi|5242 : TAAACATCATTTTGCTTATAATAAT---AG------TTCATTACTATGACATTTT---CGCCATGAAATAAAGA
gi|5243 : TAAA-ATCAATTTACTTACAA---T---AGATCTAGTTCATTATCATGACGTTTT---CTCCATGAAACAAAAATT
gi|5244 : TAAA-ATCAATTTGGTAATGA---T---AG------TT---TATTATGACATTTT---CTCCATGAAATAAAAATT
gi|5245 : TAAT-ATCAATTTGCTTAT-----T----G------TTCATTATTA-GACATTTT---CTTCATGAAATAAAAATT
gi|5246 : TATA-ATCAATTTGCTTATAA---T---AG------TTCATAATTACAATATTTT---CTCTATGATATAAAAAT
gi|5247 : TAAA-ATTAATATGCTTATAA---T---AGCTAG--TTCATTATT--GACATTTT---CTCCATGAAAGAA
gi|5248 : TGAA-ATAAATTTGCCTATAA---TTAAAG------TTCACTATTATGACGTTTTTTTCTACATGAAATAAAAATT
gi|5249 : AAA-ATCAATTTGCTTATAA---T---GG------TTCATTATTATGACATTTT---CTCTATGAAATAAAAATT
gi|5250 : TTTGCATATAA---C---AG------TTTATTATTATGTCATTTT---CTCCATGAAATAAAAATT
gi|5251 : tcttAA---T---AA------TTCATTATTATGACATTTT---CTCCATAAAATACAAATT
blockSeqs : C TAA TAA ATCTAG TTT
blockSeqs : . . . CTAG .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqCons :
originalCons : TAAA-ATCAATTTGCTTATAA---T---AG------TTCATTATTATGACATTTT---CTCCATGAAATAAAAATT
finalCons : TAAA-ATCAATTTGCTTATAA---T---AG------TTCATTATTATGACATTTT---CTCCATGAAATAAAAATT
Alignments
lowQualScore : 111111
lowQualScore : 2 444 444 222222 444
lowQualScore : . ... ... ...... ...
lowQualScore : 9 444 444 555555 444
consensus : TAAA-ATCAATTTGCTTATAA---T---AG------TTCATTATTATGACATTTT---CTCCATGAAATAAAAATT
Reference ( family-907 ) : TAAA-ATCAATTTGCTTATAA---T---AG------TTCATTATTATGACATTTT---CTCCATGAAATAAAAATT
gi|5236 : TAAA-ATCATTTTGTTTATAA---T---AG------TTCATTATTATGACATTTT---CTCCATGAAATTAGAATT
gi|5237 : TAAA-ATCAATTTGCTTGTAA---T---AG------TTCATTATTATAACATTTT---CTCCATGAAATAGAAATT
gi|5238 : TAAA-ATCAATTTGCTTATAA---A---AG------TTCATCATTATGATATTTT---CTCCATGAAATAAAAATT
gi|5239 : TGAA-ATGATTTTGCTTATAA---T---AA------TTCATTATGACGACATTTT---CTCCATGAAATAAAAATT
gi|5240 : TAAA-ATCAATTTGTTAACAA---T---AG------TTCATTATTATGACATTTT---CTCCATAAAATAAAAATT
gi|5241 : TAAA-ATCAATTTGCTTATAA---A---AG------TTCATTATTGTGACATTTT---CACCATGAGATAAAAATT
gi|5242 : TAAACATCATTTTGCTTATAATAAT---AG------TTCATTACTATGACATTTT---CGCCATGAAATAAAGA
gi|5243 : TAAA-ATCAATTTACTTACAA---T---AGATCTAGTTCATTATCATGACGTTTT---CTCCATGAAACAAAAATT
gi|5244 : TAAA-ATCAATTTGGTAATGA---T---AG------TT---TATTATGACATTTT---CTCCATGAAATAAAAATT
gi|5245 : TAAT-ATCAATTTGCTTAT-----T----G------TTCATTATTA-GACATTTT---CTTCATGAAATAAAAATT
gi|5246 : TATA-ATCAATTTGCTTATAA---T---AG------TTCATAATTACAATATTTT---CTCTATGATATAAAAAT
gi|5247 : TAAA-ATTAATATGCTTATAA---T---AGCTAG--TTCATTATT--GACATTTT---CTCCATGAAAGAA
gi|5248 : TGAA-ATAAATTTGCCTATAA---TTAAAG------TTCACTATTATGACGTTTTTTTCTACATGAAATAAAAATT
gi|5249 : AAA-ATCAATTTGCTTATAA---T---GG------TTCATTATTATGACATTTT---CTCTATGAAATAAAAATT
gi|5250 : TTTGCATATAA---C---AG------TTTATTATTATGTCATTTT---CTCCATGAAATAAAAATT
gi|5251 : tcttAA---T---AA------TTCATTATTATGACATTTT---CTCCATAAAATACAAATT