lowQualScore : 111 2222222 11 11111 1 11 111111 111111 1111 11111 11 1111 333333333333333333 11111111 111 111 11 222222 1111 11111111111111111 1 111111111111111111111
lowQualScore : 3 4 8 3 777 3 0 0000000 999 1 33 0 5 777 44444 77 1 0 5 3 9999 66 4 1 44 777 777 77 66 4 111111 7 99999 4 4 4 0 66 4 7777 2 2 1 555555 8 66 5555 5 44444 5 6 0 33 888 0 0 3333 4 0 5 2 5 0 6 777 777 888888888888888888 4 11111111 888 8 44 44 000 1 1 8 55 2 555 3 22 66 3 1 555555 77 2222 99999999999999999 0 0 0 6 9 999999999999999999999 2 4 4 777 3
lowQualScore : . . . . ... . . ....... ... . .. . . ... ..... .. . . . . .... .. . . .. ... ... .. .. . ...... . ..... . . . . .. . .... . . . ...... . .. .... . ..... . . . .. ... . . .... . . . . . . . ... ... .................. . ........ ... . .. .. ... . . . .. . ... . .. .. . . ...... .. .... ................. . . . . . ..................... . . . ... .
lowQualScore : 2 0 2 0 555 2 2 6666666 444 7 33 3 7 333 33333 99 4 7 6 0 4444 11 4 1 44 888 888 33 11 4 444444 4 22222 4 4 4 7 11 4 6666 3 3 7 000000 9 99 6666 0 00000 0 9 2 11 888 2 1 9999 4 9 4 6 2 1 9 888 444 888888888888888888 4 77777777 888 0 88 22 888 9 1 8 55 0 333 2 77 88 1 3 555555 55 8888 77777777777777777 4 2 0 5 6 888888888888888888888 7 2 3 888 2
consensus : AAAACAATCGACCCAAACTGTGTGTAAATTACCTTCCACAGTGCCTCGCGCAAATCTTCATTGGTTATACATTCAAATACAATGTGTATTGCTGGCGAGTTCACAACTGCACCGCACTTAAAACAATTCTGANAATAAGAATTACGAGAGTACAACATACTTAATAGCTTCATGGTACTCTGACATTCACCCAAAAGCAATGGATATCTTTTACTCAACANCCACAGTGCTGACGGAGAAAA---CACATCAGTAGCGGCAATGTATTCAGTAAGTTGAGGATCTTCTAGCATGGCTATTTGACGAACATTATTTTCGTATACGCGGATAGAATGTTTAATTATAGTTTTCCA-A-CAGTATTTTGAT--GGGAA-ACTTCC-GTCCTTTAAGAAAT-C-AT-----CGAATA--TATGTTGAAGACGATATTTTGCCAATACCCTATANATATCAGGAATGAATC----C--ACTTTTA-CGATATGGNNCGTCGTT---A---TATCG-NACAAGTCTATTAAG--GAATATATT-CTTTG---CA-AGAAAATGACC--CTG-G-AGA-TTACACAATTGACC--AAAAAAT-G--TCAGTTTNCGGTAGTCNATTTC-----TGATTCTA-TAGACCT--ACTG--CCTAC-CA-T---G-CNTAAAGNNACGT---GAGTCCGCGT----AT-TTGTAGGAATGCCTTGCANANATTTAATGCACANTCG---ATGACANCGTTC-------CA--T------ATCT-AATAA-CTG---TGCGCCATTNATGTAAT--T---CCATAGTTCGCAACCATATAGAGC-TTTNGGAAGA--ACAACGGATT--TATAA-A-TATTNT--A-TGACGTTA-A--GGGGT---------------GTAAGCC-TTNCTCATGGACACCA-------C--TACATACAACGCCAAAAAACGCTCTNCGTAGTTT---ATTTGCGGCTTCGTTTA
Reference ( gi|115028 ) : AAAACAATCGACCCAAACTGTGTGTAAATTACCTTCCACAGTGCCTCGCGCAAATCTTCATTGGTTATACATTCAAATACAATGTGTATTGCTGGCGAGTTCACAACTGCACCGCACTTAAAACAATTCTGATAATAAGAATTACGAGAGTACAACATACTTGATAGCTTCATGGTACTCTGACATTCACCCAAAAGCAATGGATATCTTTTACTCAACATCCACAGTGCTGACGGAGAAAA---CACATCAGTAGCGGCAATGTATTCAGTAAGTTGAGGATCTTCTAGCATGGCTATTTGACGAACATTATTTTCGTATACGCGGATAGAATGTTTAATTATAGTTTTCCA-A-CAGTATTTTGAT--GGGAA-ACTTCC-ATTCTTTAAGAAAT-C-AT-----CGAATA--TATGTTGAAGACGATATTTTGCCAATACCCTATAAATATCAGGAATTAATC----C--ACTTTTA-CGATATGGCGCATCGTT---A---TATCG-GACAAGTCTATTAAG--GAATATATT-CTTTG---CA-AGAAAATGACC--CTG-G-AGA-TTACACAGTTGACC--AAAAAAT-G--TCAGTTTACGGTAATCTATCTC-----TGATTCTA-TAGACCT--ACTG--CCTAC-CA-T---G-CATAAAGAAACGT---GAGTCCGCGT----AT-TTGTAGAAATGCCTTGCAAAAATTTAATGCACATTCG---ATGACAGCGTTC-------CA--T------ATCT-AATAA-CTG---TGCGCCATTCATGTAAT--T---CCATAATTCGCAACCATAAAGAGC-CTTTGGAAGA--ACAACAGATT--TATAA-A-TATTAT--A-TGACGTTA-A--GGGAT---------------GTAAGCC-TTGCTCATGGACACCA-------C--TACATACAACGCCAAAAAATGCTCTTCTTAGTTT---ATTTGCGGCTTCGTTTA
gi|115029 : AAAACAATCGACCCAAACTGTGTGTAAATTACCTTCCACAGTGCCTCGCGCAAATCTTCATTGGTTATACATTCAAATACAATGTGTATTGCTGGTGAGTTCACAACTGCACCGCACTTAAAACAATTCTGATAATAAGAATTACGAGAGTACAACATACTTAATAGCTTCATGGTACTCTGACATTCACCCAAAAGCAATGGATATCTTTTACTCAACATCCACAGTGCTGACGGAGAAAA---CACATCAGTAGCGGCAATGTATTCAGTAAGTTGAGGATCTTCTAGCATGGCTATTTGACGAACATTATTTTCGTATACGCGGATAGAATGTTTAATTATAGTTTTCCA-A-CAGTATTTTGAT--GGGAA-ACTTCC-ATCCTTTAAGAAAT-C-AT-----CGAATA--TATGTTGAAGACGATATTTTGCCAATACCCTATAAATATCAGGAATGAATC----C--ACTTTTA-CGATATGGCGCATCGTT---A---TATCG-GACAAGTCTATTAAG--GAATATATT-CTTTG---CA-AGAAAATGACC--CTG-G-AGA-TTACACAGTTGACC--AAAAAAT-G--TCAGTTTACGGTAATCTATCTC-----TGATTCTA-TAGACCT--ACTG--CCTAC-CA-T---G-CATAAAGAAACGT---GAGTCCGCGT----AT-TTGTAGAAATGCCTTGCAAAAATCTAATGCACATTCG---ATGACAGCGTTC-------CA--T------ATCT-AATAA-CTG---TGCGCCATTCATGTAAT--T---CCATAATTCGCAACCATAAAGAGC-CTTTGGAAGA--ACAACAGATT--TATAA-A-TATTAT--A-TGACGTTA-A--GGGAT---------------GTAAGCC-TTGCTCATGGACACCA-------C--TACATACAACGCCAAAAAATGCTCTTCTTAGTTT---ATTTGCGGCTTCGTTTA
gi|115031 : AAAACAATCGACCCAAACTGTGTGTAAATTACCTTCCACAGTGCCTCGCGCAAATCTTCATTGGTTATACATTCAAATACAATGTGTATTGCTGGCGAGTTCACAACTGCACCGCACTTAAAACAATTCTGATAATAAGAATTACGAGAGTACAACATACTTAATAGCTTCATGGTAGTTTGACATTCACCCAAAAGCAATAGATATCTTTTACTCAACATCCACAGTGCTGACGGAGAAAA---CACATCAGTAGCGGCAATGTATTC---------------TTCTAGCATGGCTATTTGACGAACATTATTTTCGTATACGCGGATAGAATGTTTAATTATAGTT------------------------------TTCC-ATCCTTTAAGAAAT-C-AT-----CGAATA--TATGTTGAAGACGATATTTTGCCAATACCCTATAAATATCAGGAATGAATC----C--ACTTTTA-CGATATGGCGCATCGTT---A---TATCG-GACAAGTCTATTAAG--AATTATATT-CTTTG---TA-AGAAAATGACC--CTG-G-AGA-TTACACAGTTGACC--AAAA-AT-G--TCAGTTTACGGTAATCTATCTC-----TGATTCTA-TAGACCT--ACTG--CCTAC-CA-T---G-CATAAAGATACGT---GAGTTCGCGT----AT-TTGTAGAAATGCCTTGCAAAAATTTAATGCACATTCG---ATGACAGCGTTC-------TT--T------ATCT-AATAA-CTG---TGCGCCATTCATGTAAT--T---CCAAAATTCACAACCATAAAGAGC-CTTTGGAAGA--ACAACAGATT--TATAA-A-TATTAT--A-TGACGTTA-A--GGGAT---------------GTAAGCC-TTGCTCATGGACACCA-------C--TACATACAACGCCAAAAAAAGCTCTTCTTAGTTT---ATTTGCGGTTTCGTTTA
gi|115030 : AAAACAATCGACCCAAACTGTGTGTAAATTACCTTTCACAGTGCCTCGCGCAAATCTTCATTGGTTATATAT-CAAATACAATGTGTACTGCTGGCGAGTTTACAATTGCACCACACTTAAAACAATTCTGAAAATAAGAATTACGACAGTACAACATACTTAATAGCTTCTTGGTACTCTGACATTCACCCAAAAGCATTGAATATCTTTTACTCAACAGCCACAGTGCTGACAAAGAGAA---CACATCAGTAGCAGCAATGTATTCAGTAAGTTGAGGATCTTCTAGCATTGCTATTTGACGAACATTATTTTCGTATACGCGGATAGAATGTT-AATTATAGTTTCCCT-A-CAGTATTTTGAT--GGCAA-ACTTCA-ATCCTTTAAGAAAT-C-AT-----CGAATA--TATGTTGAAGGCGATATTTTGCCAATACCCTACACAAATTAGGAATTAATC----C--ACTTTAA-CGATATGGGGCATCGTT---A---TATCG-GATAAGTCTATTAAG--GAATATATT-CTTTG---CA-AGAAAATGACC--CTG-G-AGA-TTACACAATTGACC--AAAAAAT-G--TCAGTTTACGGTAATATATATG-----TGATTCTA-TAGACCT--ACTT--CCTAC-CA-T---G-CATTAAGATACGT---GAGTGTGCGT----AT-TTGTAGAAATGCTTTGCAAAAATTTAATGAACATTTG---ATGACAGCGTTC-------CA--T------ATCT-AATAA-CTG---TGCGCCATCCATGTAAT--T---CAATAATTTGCAACCATAAAGAGC-CTTTGGAAGA--ACAACAGATT--TATGA-A-TATTAT--A-TGACGTTA-A--GGGAC---------------GCAAGCC-TTGCTCATGCACACCA-------C--TACATACAACGCCAAAAAA-GCTCTTCTTAGTTT---ATTTGCAGCTTCGTTTA
gi|115032 : AAAACAGCCGACCCAAACTGTGTGTAAATTTCCTTCCACAGTGCCTCGCACAAATCTTCATCGACTATACATTCAAAGGCAATATGTATTGCTGGCGAGTTTACAACTGCAAAACACTTAACACAATTCTGAAAATAAGAATCACGAGAATACAAAATACTTTATAGCTTCATGGTACTCTGACATTCACCCAAAAGCAATGGATATCTTTTACTCAACAGCCACAGCGCTGACGGAAAAAAAAACACATCAGAAGCGGCAATAAATTCAGTAAGTTGAGAATCTTCTAGCATGGCTATTTGGCATACATTATTTTCGTATACGCGGATTAAATGTTTAATTTTAGTTTTCCG-A-CAGTATTTTGAT--GGGAA-TCGTCC-ATCCTTTATGAAAT-T-AT-----CGTATA--TATGTTGAAGACGATATTTTGCCAATACCCTAAAAATATCAGGAATGAATC----C--ACTGTTA-CGATATTGCTCATCGTT---A---TATCG-GAGAAGTCTATCAAG--GAATATATT-CTTTG---AA-AGGAAATAACC--CTT-G-AGA-TTACACAGTTGACC--AAAAAAT-T--TTAGTTTACGGTAGTCTATCTC-----TGATTCTA-TAGACCT--ACTG--CCTAC-CA-T---G-CATAAAGAAACGT---GAGTCGACGT----AT-TTGTAGAAATACC-TATAAATACTTA
gi|115034 : TGTCTAAGAATATATTTCCATG-CA-TACTTGGAT--GGAAATATTGCT-GTTTTAGAATAATT-A-AC-----CAAATAATTATAT---AGATCATACTTCGTTAATATTCTATAGATGTCAGGAATAAAAC----CTAATGTTTG-TT-TAT----CATCACT---AAGATATTTTAACAA-----TTAAC--AAATA-ATTGCTTAG---CA-ATATACTTATT--CGG-G-AGT-CTGCATAATTGACC--AAAGAATTG--T-AGCTTCCTGTAGTCGATTTC-----CGTTTCAAGTGAAGTT--AC-------AC-CAATAGAG-CTTAAAGCAA-------AATCCGTATTTACATATTGTGGGA-TATTTTGGATAAATTTTATACAGAATCT---ATGTCCTCGTTC-------TAGTT------GTAT-AATAT-TTGATTTG----GTTAATG-AAT--T---CCATAATTCACAACCATATAGGGA-TTTTGGTATT--ACGATTGACT--TATA----TATTGTTAA-TGTTGTCA-A--GGGATTAAGACCATGCGGATGTAAGCC-
gi|115033 : TGTCTTATGATATATTTCCA-AACA-TGTTTTGAA--GGAAAGACACCCGATTCGATAAAACGTTC-ATAAATGTGAAC---TAAGTTG----CAATGTCTT---AATAAGTTATATATATCAGGAATAAACC----C--TCCTTTA-TTATACGGGTTGTCATT---A---TAACG-TATAAGTCTATTTAA--AAATATATC-TTTTGC--CA-AGAAactattaataagacttaaaaaaagtccacgtaacttatt
gi|115035 : TTTTCCA---TA-TATTTTGAGAAGGGAA-TTCTCC-GGTTTTTGAATAGT-CTGT-----TAGATA--CTTGGTTAAGCCG-TACCGACCTAATAATCTATATATATCAGGCATGAATCCTTTC--ATTTTTAGGGGTATGG
gi|115036 : TATATGTATCAGGAATAAACC----C--TCTTTTA-TTATACGGGTTGTCATT---A---TAACG-TATAAGTCTATTTAA--AAGTATA-T-ATTTG---CC-AAGAAATGA-G--ATG-GTAAA-TTACACAACTGGCCGAAAAAAAA-G--ACAACTTTCTGTAATCAATTTCGCTTTTGATTGTATTGGACCC--A--------AT-AA-G---A-CTTAACGCTACAT---CCGTCCTTGT----GT-TTGAGGGAATGCCCTGTATATACTTTATACAAAATCT---ATGAGAACGTTC-------CA---------GTCT-TATTA-TT----TGTG-CATTAGAAAGAT--CGGACCAAAATTCATAACCAAATAACGC-TTTAGGAAGT--ACAACTGATT--TATAT-A-TTTTAA--T-TGAAGTAA-T--CGGGT---------------TTAACCG-TTTTTCATGTTTACCA-------C--TACTCATGAAGCTAAAGAACGCTCACCGCAGTTT---Aaaaagtatgatgtaagtctacgggaaaatacttgtttaattttgaattttgagttaagccgacacaattgcccaagtaacagtaattttctcttgtcaataatatgtttaatagggtaaatacccagacagcttaaggcaatatctgttcttgatcctgtcggtatattttgaatacgcttaacgcactgtcgatgagcccgttctaggggacataactgattgtctgtgagatcattccacagttcactcccatatagtgctttgggaagaacaaccgattcatatatacgctttgatgttagggcgtgtattccatttctataaattccacagtcagcaatactgaaaaatgtttttcttaattta
gi|115037 : ATATCATGAAAGAATT----C--ATTCTGA-CTACCTGG---GTCGTTTACA---TAATG-CATCAGTCTA--AAGAAGAAAATATC-TCTTG------AGAAG-TGGTCGACCGAG-AGC-CTACATAATTGACC--GAAAAAT-A--TTAGTTTACGCTTGTCAATTTC-----ACACTCTA-
gi|115038 : T---A---TATTG-CACAAGTCGATTAAC--GAAAATATT-TTTTATTCCGTAGTAGTTGTCA--ATG-------TGACACAATTGGCC--AAACA-T-GAGT-AGTTTTCGTTTGTCTATTTC-----ATATTCTA-TTGGCATTAAC----CCTATGCA-G---G-C-TAGTGC--CGTTTTGC-TTTGCGTC---AT-TT-TAGGGAGGGATCGCATATGTTT--TGCACACT-GTACATGACCTCGCTC-------GAG-TG-----ACCG-AATG---TG---TGTGTCTTTTATGGAAT--T---CCATAGCTCACAACCGTATAAAGC-CTTTGAAAGA--ACAATTGTTTCGTATAA-A-CGCT-T----TGAAGTGA-T--AGGGT---------------GTAAACC-ATCTTTATAAATACCAACAT---C--TGCTTA----GCTAAAATATGTTTTACGTATTTT---
gi|115039 : ---CA-AGAAA-TGAGA---TG-G-TGAATTACACAATTGGCC--GAAAAGG-G--ACAGCTTTCTGTAATCAATTTC-------GCTCT--TAATCGT--ATTGGACCCAA-TA-A---GACTTAACGCTACAT---CTGTCCTTGT----GT-TTGAGGGAATGCCCTGTATATACTTTATACAAAATCT---ATGAGAACGTTC-------CA---------GTCT-TATAA-TT----TGTG-CATTAGAAAGAT--CGGACCAAAATTCACAACCAAATAACGC-TTTAGGAAGA--ACAACTGATT--TATAT-A-TTTTAA--T-TGAAGTAA-T--CGGGT---------------TTAACCC-TTTTTCATGTATACCA-------C--TACTCATTAAGCTAAAGAACGCTCCACGCAGTTTAGAATT---AGCTTCATT
gi|115040 : GTTCTTGT----AT-ATGTAGGTAAGTTTTGAATAAATCTGATGCATAAACG---ATGGGCTCGTTCT------CA--TTTAACCATCTCAGTAA---G---TG--------ACGTAGTGTT---TCA-AATTTACACTCATACAAAGC-TTTAGGAATA--ACGATATATT--TAT---A-TATTGTCAA-TAAAGTTA-A--AGGAT---------------
gi|115035 : TTAACGCACTGTCG---ATGAGCCCGTTCTAGGGGACA--T------AACT-GATTGTCTG---TGAG--ATC------AT--T---CCACAGTTCACTCCCATATAGTGC-TTTGGGAAGA--ACAACCGATT--CATAT-A-TACGCT--T-TGATGTTA-G--GGCGT---------------GTATTCCATTTCT-ATAAATTCCA-------CAGT-CA-GCAATACTGAAAAATGTTTTTCTTAATTT---A
gi|115041 : ttttccatatattttgagaagggaattctccggtttttgaatagtctgttagatacttggttaagccgtaccgacctaataatctatatatatcaggcatgaatcctttcatttttaggggtatggaaaagtatgatgtaagtctacgggaaaatacttgtttaattttgaattttgagttaagccgacacaattgcccaagtaacagtaattttctcttgtcaataatatgtttaatagggtaaatacccagacagcttaaggcaatatctgttcttgatcctgtcggtatattttgaatacgcTTATATCAT--T---CCATAGTTCACAACCAAATAGAGC-TCGTGGTAGG--ACAATGGACG--TGTAA-AGTTTTGC----TGCCGTTATA--GGGTT---------------G-ACGCCATTACT-ATGGATACCG-------C--
gi|115042 : TTATATCAT--T---CCATAGTTCACAACCAAAATGAGCGCGTAGTAAG---ACAATGGATG--TGTAACG-TTTTGC----TGGCGTTATA--GGGTC---------------G-ATGCCGTTACT-ATGGATACCA-------C--
gi|115043 : T--T---CCATAGTTCGCAGCCGTATAAAGC-TCGCGAGAGG--ACAACAGTTTGATATAA-A-TATTTT--ACTG----TA-ATTGGG-T---------------GTAAACC-ATTTTGATGGACGCCA-------CAGT-CGGCTAAT-CCAAAATATGTTTTACGTAGTTT---A
gi|115044 : T--T---CCATAGTTCGCAGCCGTATAAAGC---TTGCAAGAGGACAACAGTTTGATATAG-A-TGTTTT--ACTG----TA-ATTGGG-T---------------GTAAACC-ATTTTGATGGACGCCACAGTCGGC--T-CAT------CCAAAATATGTTTTACGTAATTT---A
Alignments
lowQualScore : 111 11 1111 111111 111111 1111 111111 333333333333333333 1 111 11 11 22222 222222222222222222222
lowQualScore : 0 1 1 444 0 22 7 77 77 2 1 5 5 5 77 1 9999 44 22 0 2 4 3 4 55 8888 8888 55 4 4 999999 0000 777 3 3 55 000000 55 3 444 1 1 44 000000 3 4 55 7777 777 4 0000 4 1 22 777 3 2 3 3 000000 1 1 1 3 1 777 11 222222222222222222 4 55 777 55 4 1 55 000 1 0 1 2 1 1 6 11 00 1 33333 55 8888 3 9 1 8 0 6 222222222222222222222 7 0 1 1 666 0
lowQualScore : . . . ... . .. . .. .. . . . . . .. . .... .. .. . . . . . .. .... .... .. . . ...... .... ... . . .. ...... .. . ... . . .. ...... . . .. .... ... . .... . . .. ... . . . . ...... . . . . . ... .. .................. . .. ... .. . . .. ... . . . . . . . .. .. . ..... .. .... . . . . . . ..................... . . . . ... .
lowQualScore : 8 0 0 000 8 99 9 99 66 7 7 7 7 7 99 0 4444 66 00 7 9 0 8 0 55 5555 5555 55 0 0 555555 8888 888 6 6 88 555555 00 6 111 0 0 88 666666 6 0 55 0000 111 0 3333 0 0 00 000 5 8 6 6 555555 2 0 0 9 0 000 66 111111111111111111 0 77 000 44 1 0 00 000 1 3 4 9 0 4 9 88 44 0 99999 66 6666 1 2 0 5 2 5 222222222222222222222 8 4 0 4 444 8
consensus : AAAACAATCGACCCAAACTGTGTGTAAATTACCTTCCACAGTGCCTCGCGCAAATCTTCATTGGTTATACATTCAAATACAATGTGTATTGCTGGCGAGTTCACAACTGCACCGCACTTAAAACAATTCTGATAATAAGAATTACGAGAGTACAACATACTTAATAGCTTCATGGTACTCTGACATTCACCCAAAAGCAATGGATATCTTTTACTCAACATCCACAGTGCTGACGGAGAAAA---CACATCAGTAGCGGCAATGTATTCAGTAAGTTGAGGATCTTCTAGCATGGCTATTTGACGAACATTATTTTCGTATACGCGGATAGAATGTTTAATTATAGTTTTCCA-ACAGTATTTTGAT--GGGAA-ACTTCCGTCCTTTAAGA-AATC-A-TCGAATA--TATGTTGAAGACGATATTTTGCCAATACCCTATANATATCAGGAATGAATC----CACTTTTA-CGATATGGCGCGTCGTTAT-ATCGGAC-A--AG----TCTA----TTAAG--GAATATA-TT-CTTTG---CA-AGAAAA---TGACC--CTG-G-AGA-TT------ACACAATTGACC--AAAAAA-TG-TCAGTTTNCGGTAGTCNAT-CTC-----TGATTCTA-T-AGACCT--ACTG--CCTA-C-C-AT---G-CNTAAAGNNACG---TGAGTCCGCGT-AT-TTGTA------GGAATGCCTTGCANANATTTAATGCACANTCG---ATGACANCGTTC-------CA--T------ATCT-AATAACTG---TG-CGCCATTNATGTAATT---CCATAGTTCGCAACCATATAGAGC-CTTNGGAAGAACAACGGATT--TATAAATATTNT--A--TGACGTTA-A-GGGGTGTAAG-CC-TTNCTCATGGACACCACTA-------C--ATACGAC---GCCAAAAAATGCTCTNCGTAGTTT---ATTTGCGGCTTCGTTTA
Reference ( family-905 ) : AAAACAATCGACCCAAACTGTGTGTAAATTACCTTCCACAGTGCCTCGCGCAAATCTTCATTGGTTATACATTCAAATACAATGTGTATTGCTGGCGAGTTCACAACTGCACCGCACTTAAAACAATTCTGANAATAAGAATTACGAGAGTACAACATACTTAATAGCTTCATGGTACTCTGACATTCACCCAAAAGCAATGGATATCTTTTACTCAACANCCACAGTGCTGACGGAGAAAA---CACATCAGTAGCGGCAATGTATTCAGTAAGTTGAGGATCTTCTAGCATGGCTATTTGACGAACATTATTTTCGTATACGCGGATAGAATGTTTAATTATAGTTTTCCA-ACAGTATTTTGAT--GGGAA-ACTTCCGTCCTTTAAGA-AATC-A-TCGAATA--TATGTTGAAGACGATATTTTGCCAATACCCTATANATATCAGGAATGAATC----CACTTTTA-CGATATGGNNCGTCGTTAT-ATCGNAC-A--AG----TCTA----TTAAG--GAATATA-TT-CTTTG---CA-AGAAAA---TGACC--CTG-G-AGA-TT------ACACAATTGACC--AAAAAA-TG-TCAGTTTNCGGTAGTCNAT-TTC-----TGATTCTA-T-AGACCT--ACTG--CCTA-C-C-AT---G-CNTAAAGNNACG---TGAGTCCGCGT-AT-TTGTA------GGAATGCCTTGCANANATTTAATGCACANTCG---ATGACANCGTTC-------CA--T------ATCT-AATAACTG---TG-CGCCATTNATGTAATT---CCATAGTTCGCAACCATATAGAGC-TTTNGGAAGAACAACGGATT--TATAAATATTNT--A--TGACGTTA-A-GGGGTGTAAG-CC-TTNCTCATGGACACCACTA-------C--ATACAAC---GCCAAAAAACGCTCTNCGTAGTTT---ATTTGCGGCTTCGTTTA
gi|115028 : AAAACAATCGACCCAAACTGTGTGTAAATTACCTTCCACAGTGCCTCGCGCAAATCTTCATTGGTTATACATTCAAATACAATGTGTATTGCTGGCGAGTTCACAACTGCACCGCACTTAAAACAATTCTGATAATAAGAATTACGAGAGTACAACATACTTGATAGCTTCATGGTACTCTGACATTCACCCAAAAGCAATGGATATCTTTTACTCAACATCCACAGTGCTGACGGAGAAAA---CACATCAGTAGCGGCAATGTATTCAGTAAGTTGAGGATCTTCTAGCATGGCTATTTGACGAACATTATTTTCGTATACGCGGATAGAATGTTTAATTATAGTTTTCCA-ACAGTATTTTGAT--GGGAA-ACTTCCATTCTTTAAGA-AATC-A-TCGAATA--TATGTTGAAGACGATATTTTGCCAATACCCTATAAATATCAGGAATTAATC----CACTTTTA-CGATATGGCGCATCGTTAT-ATCGGAC-A--AG----TCTA----TTAAG--GAATATA-TT-CTTTG---CA-AGAAAA---TGACC--CTG-G-AGA-TT------ACACAGTTGACC--AAAAAA-TG-TCAGTTTACGGTAATCTAT-CTC-----TGATTCTA-T-AGACCT--ACTG--CCTA-C-C-AT---G-CATAAAGAAACG---TGAGTCCGCGT-AT-TTGTA------GAAATGCCTTGCAAAAATTTAATGCACATTCG---ATGACAGCGTTC-------CA--T------ATCT-AATAACTG---TG-CGCCATTCATGTAATT---CCATAATTCGCAACCATAAAGAGC-CTTTGGAAGAACAACAGATT--TATAAATATTAT--A--TGACGTTA-A-GGGATGTAAG-CC-TTGCTCATGGACACCACTA-------C--ATACAAC---GCCAAAAAATGCTCTTCTTAGTTT---ATTTGCGGCTTCGTTTA
gi|115029 : AAAACAATCGACCCAAACTGTGTGTAAATTACCTTCCACAGTGCCTCGCGCAAATCTTCATTGGTTATACATTCAAATACAATGTGTATTGCTGGTGAGTTCACAACTGCACCGCACTTAAAACAATTCTGATAATAAGAATTACGAGAGTACAACATACTTAATAGCTTCATGGTACTCTGACATTCACCCAAAAGCAATGGATATCTTTTACTCAACATCCACAGTGCTGACGGAGAAAA---CACATCAGTAGCGGCAATGTATTCAGTAAGTTGAGGATCTTCTAGCATGGCTATTTGACGAACATTATTTTCGTATACGCGGATAGAATGTTTAATTATAGTTTTCCA-ACAGTATTTTGAT--GGGAA-ACTTCCATCCTTTAAGA-AATC-A-TCGAATA--TATGTTGAAGACGATATTTTGCCAATACCCTATAAATATCAGGAATGAATC----CACTTTTA-CGATATGGCGCATCGTTAT-ATCGGAC-A--AG----TCTA----TTAAG--GAATATA-TT-CTTTG---CA-AGAAAA---TGACC--CTG-G-AGA-TT------ACACAGTTGACC--AAAAAA-TG-TCAGTTTACGGTAATCTAT-CTC-----TGATTCTA-T-AGACCT--ACTG--CCTA-C-C-AT---G-CATAAAGAAACG---TGAGTCCGCGT-AT-TTGTA------GAAATGCCTTGCAAAAATCTAATGCACATTCG---ATGACAGCGTTC-------CA--T------ATCT-AATAACTG---TG-CGCCATTCATGTAATT---CCATAATTCGCAACCATAAAGAGC-CTTTGGAAGAACAACAGATT--TATAAATATTAT--A--TGACGTTA-A-GGGATGTAAG-CC-TTGCTCATGGACACCACTA-------C--ATACAAC---GCCAAAAAATGCTCTTCTTAGTTT---ATTTGCGGCTTCGTTTA
gi|115030 : AAAACAATCGACCCAAACTGTGTGTAAATTACCTTTCACAGTGCCTCGCGCAAATCTTCATTGGTTATATAT-CAAATACAATGTGTACTGCTGGCGAGTTTACAATTGCACCACACTTAAAACAATTCTGAAAATAAGAATTACGACAGTACAACATACTTAATAGCTTCTTGGTACTCTGACATTCACCCAAAAGCATTGAATATCTTTTACTCAACAGCCACAGTGCTGACAAAGAGAA---CACATCAGTAGCAGCAATGTATTCAGTAAGTTGAGGATCTTCTAGCATTGCTATTTGACGAACATTATTTTCGTATACGCGGATAGAATGTT-AATTATAGTTTCCCT-ACAGTATTTTGAT--GGCAA-ACTTCAATCCTTTAAGA-AATC-A-TCGAATA--TATGTTGAAGGCGATATTTTGCCAATACCCTACACAAATTAGGAATTAATC----CACTTTAA-CGATATGGGGCATCGTTAT-ATCGGAT-A--AG----TCTA----TTAAG--GAATATA-TT-CTTTG---CA-AGAAAA---TGACC--CTG-G-AGA-TT------ACACAATTGACC--AAAAAA-TG-TCAGTTTACGGTAATATAT-ATG-----TGATTCTA-T-AGACCT--ACTT--CCTA-C-C-AT---G-CATTAAGATACG---TGAGTGTGCGT-AT-TTGTA------GAAATGCTTTGCAAAAATTTAATGAACATTTG---ATGACAGCGTTC-------CA--T------ATCT-AATAACTG---TG-CGCCATCCATGTAATT---CAATAATTTGCAACCATAAAGAGC-CTTTGGAAGAACAACAGATT--TATGAATATTAT--A--TGACGTTA-A-GGGACGCAAG-CC-TTGCTCATGCACACCACTA-------C--ATACAAC---GCCAAAAAA-GCTCTTCTTAGTTT---ATTTGCAGCTTCGTTTA
gi|115031 : AAAACAATCGACCCAAACTGTGTGTAAATTACCTTCCACAGTGCCTCGCGCAAATCTTCATTGGTTATACATTCAAATACAATGTGTATTGCTGGCGAGTTCACAACTGCACCGCACTTAAAACAATTCTGATAATAAGAATTACGAGAGTACAACATACTTAATAGCTTCATGGTAGTTTGACATTCACCCAAAAGCAATAGATATCTTTTACTCAACATCCACAGTGCTGACGGAGAAAA---CACATCAGTAGCGGCAATGTATTC---------------TTCTAGCATGGCTATTTGACGAACATTATTTTCGTATACGCGGATAGAATGTTTAATTATAGTTTTCCA-----------------------------TCCTTTAAGA-AATC-A-TCGAATA--TATGTTGAAGACGATATTTTGCCAATACCCTATAAATATCAGGAATGAATC----CACTTTTA-CGATATGGCGCATCGTTAT-ATCGGAC-A--AG----TCTA----TTAAG--AATTATA-TT-CTTTG---TA-AGAAAA---TGACC--CTG-G-AGA-TT------ACACAGTTGACC--AAAA-A-TG-TCAGTTTACGGTAATCTAT-CTC-----TGATTCTA-T-AGACCT--ACTG--CCTA-C-C-AT---G-CATAAAGATACG---TGAGTTCGCGT-AT-TTGTA------GAAATGCCTTGCAAAAATTTAATGCACATTCG---ATGACAGCGTTC-------TT--T------ATCT-AATAACTG---TG-CGCCATTCATGTAATT---CCAAAATTCACAACCATAAAGAGC-CTTTGGAAGAACAACAGATT--TATAAATATTAT--A--TGACGTTA-A-GGGATGTAAG-CC-TTGCTCATGGACACCACTA-------C--ATACAAC---GCCAAAAAAAGCTCTTCTTAGTTT---ATTTGCGGTTTCGTTTA
gi|115032 : AAAACAGCCGACCCAAACTGTGTGTAAATTTCCTTCCACAGTGCCTCGCACAAATCTTCATCGACTATACATTCAAAGGCAATATGTATTGCTGGCGAGTTTACAACTGCAAAACACTTAACACAATTCTGAAAATAAGAATCACGAGAATACAAAATACTTTATAGCTTCATGGTACTCTGACATTCACCCAAAAGCAATGGATATCTTTTACTCAACAGCCACAGCGCTGACGGAAAAAAAAACACATCAGAAGCGGCAATAAATTCAGTAAGTTGAGAATCTTCTAGCATGGCTATTTGGCATACATTATTTTCGTATACGCGGATTAAATGTTTAATTTTAGTTTTCCG-ACAGTATTTTGAT--GGGAA-TCGTCCATCCTTTATGA-AATT-A-TCGTATA--TATGTTGAAGACGATATTTTGCCAATACCCTAAAAATATCAGGAATGAATC----CACTGTTA-CGATATTGCTCATCGTTAT-ATCGGAG-A--AG----TCTA----TCAAG--GAATATA-TT-CTTTG---AA-AGGAAA---TAACC--CTT-G-AGA-TT------ACACAGTTGACC--AAAAAA-TT-TTAGTTTACGGTAGTCTAT-CTC-----TGATTCTA-T-AGACCT--ACTG--CCTA-C-C-AT---G-CATAAAGAAACG---TGAGTCGACGT-AT-TTGTA------GAAATACC-TATAAATACTTA
gi|115034 : TGTCTAAGAATATATTTCCATGCA-TACTTGGAT--GGAAATATTGCTGT--TTTAGAATAATT-AACCAAATAATTATAT---AGATCATACTTCGTTAATATTCTATAGATGTCAGGAATAAAAC----C-----TA-----ATG-TTTGT--TTATCATC--ACTA--AGATATTTTAACAATTAAC--AAATA-A-TTGCTTAG---CA-ATATAC---TTATT--CGG-G-AGT-CT------GCATAATTGACC--AAAGAATTG-T-AGCTTCCTGTAGTCGAT-TTC-----CGTTTCAAGT-GAAGTT--AC-------A-C-CAATAGAG-CTTAAAGCAA-------AATC--CGT-AT-TTACATATTGTGGGATATTTTGGATAAATTTTATACAGAATCT---ATGTCCTCGTTC-------TAGTT------GTAT-AATATTTGATTTG-----GTTAATG-AATT---CCATAATTCACAACCATATAGGGA-TTTTGGTATTACGATTGACT--TAT--ATATTGTTAA--TGTTGTCA-A-GGGAT-TAAGACC-ATGCGGATGTAAGCCACTA-------TTAATAAGAC----TTAAAAAAAG-TCCACGTAACTT---ATT
gi|115035 : TTTTCCA--TA-TATTTTGAGAAGGGAA-TTCTCCGGTTTTTGAAT-AGTCTG-TTAGATA--CTTGGTTAAGCCG-TACCGACCTAATAATCTATATATATCAGGCATGAATCCTTTCATTTTTAGGGGTATGGAAAAGTATGAT-GT------A--AG----TCTA----C--GG--GAAAATACTT-GTTT-----------AATTTTGAAT--TTT-G-AG--TTAAGCCGACACAATTGCCC--AAGTAA-CA-GTAATTTTCTCTTGTCAATAATA-----TG-TTTAA-T-AGGGTA--AATA--CCCAGA-C-A----G-CTTAAGGCAATA---TCTGTTCTTG--ATCCTGTC------GGTATATTTTGAATACGCTTAACGCACTGTCG---ATGAGCCCGTTCTAGGGGACA--T------AACT-GAT---TG---TC-TG----TGAGATCATT---CCACAGTTCACTCCCATATAGTGC-TTTGGGAAGAACAACCGATT--CATATATACGCT--T--TGATGTTA-G-GGCGTGTATT-CCATTTCT-ATAAATTCCAC-AGT-----C--A-GCAAT---ACTGAAAAATGTTTTTCTTAATTT---
gi|115036 : TATATGTATCAGGAATAAACC----CTCTTTTA-TTATACGGGTTGTCATTAT-AACGTAT-A--AG----TCTA----TTTAA--AAGTATA-T--ATTTG---CC-AAGAAA---TGAGA---TG-GTAAA-TT------ACACAACTGGCCGAAAAAAA-AG-ACAACTTTCTGTAATCAAT-TTCGCTTTTGATTGTA-TTGGACCC--AATA-----------AG---A-CTTAACGCTACA---TCCGTCCTTGT-GT-TTGAG------GGAATGCCCTGTATATACTTTATACAAAATCT---ATGAGAACGTTC-------CA---------GTCT-TATTATT----TG-TG-CATTAGAAAGATCGGACCAAAATTCATAACCAAATAACGC-TTTAGGAAGTACAACTGATT--TAT--ATATTTT--AATTGAAGTAA-T-CGGGTTTAAC-CG-TTTTTCATGTTTACCACTA-------C--TCATGAA---GCTAAAGAACGCTCACCGCAGTTT---
gi|115037 : ATATCATGAAAGAATT----CATTCTGA-CTACCTGGGTCGT--TTAC-ATAATGC-ATCAG----TCTA------AAGAAGAAAATA-TC-TCTTG------AGAAG----TGGTCGACCGAG-AGC-CT------ACATAATTGACC--GAAAAA-TA-TTAGTTTACGCTTGTCAAT-TTC-----ACACTCTA-
gi|115038 : TAT-ATTGCAC-A--AG----TCGA----TTAAC--GAAAATA-TT-TTTTATTCCGTAGTAGT---TGTCA--ATG-------TG------ACACAATTGGCC---AAACA-TGAGTAGTTTTCGTTTGTCTAT-TTC-----ATATTCTA-T-TGGCATTAAC----CCTA-TGC-AG---G-CT---AGTGCCGTTTTG-CTTTGCGTCAT-TT-TA------GGGAGGGATCGCATATGTTT--TGCACACT-GTACATGACCTCGCTC-------GAG-TG-----ACCG-AATG--TG---TG-TGTCTTTTATGGAATT---CCATAGCTCACAACCGTATAAAGC-CTTTGAAAGAACAATTGTTTCGTATAAACGCTT------TGAAGTGA-T-AGGGTGTAAA-CC-ATCTTTATAAATACCA--A-------C--AT-CTGCTTAGCTAAAATATGTTTTACGTATTTT---
gi|115039 : ---CA-AGAAA----TGAGA---TG-G-TGAATT------ACACAATTGGCC--GAAAAG-GG-ACAGCTTTCTGTAATCAAT-TTC-------GCTCT--T-AATCGT--ATTGGACCCA-A-T-AA---GACTTAACGCTACA---TCTGTCCTTGT-GT-TTGAG------GGAATGCCCTGTATATACTTTATACAAAATCT---ATGAGAACGTTC-------CA---------GTCT-TATAATT----TG-TG-CATTAGAAAGATCGGACCAAAATTCACAACCAAATAACGC-TTTAGGAAGAACAACTGATT--TAT--ATATTTT--AATTGAAGTAA-T-CGGGTTTAAC-CC-TTTTTCATGTATACCACTA-------C--TCATTAA---GCTAAAGAACGCTCCACGCAGTTTAGAATT---AGCTTCATT
gi|115040 : GTTCTTGT-AT-ATGTA------GGTAAGTTTTGAATAAATCTGATGCATAAACG---ATGGGCTCGTTCT------CA--TTTAACCATCTCAGTAA--G---TGACG----TAGTGT---T---TCA-AATTTACACTCATACAAAGC-TTTAGGAATAACGATATATT--TAT--ATATTGTCAA--TAAAGTTA-A-AGGAT
gi|115041 : TTATATCATT---CCATAGTTCACAACCAAATAGAGC-TCGTGGTAGGACAATGGACG--TGTAAA-GTTTT--GC-TGCCGTTATA-GGGTTG-ACG-CCATTACT-ATGGATACCGC
gi|115042 : TTATATCATT---CCATAGTTCACAACCAAAATGAGCGCGTAGTAAG-ACAATGGATG--TGT-AACGTTTT--GC-TGGCGTTA-T-AGGGTCGATG-CCGTTACT-ATGGATACCAC
gi|115043 : TT---CCATAGTTCGCAGCCGTATAAAGC-TCGCGAGAGGACAACAGTTTGATATAAATATTTT--AC-TG----TA-ATTGGGTGTAAA-CC-ATTTTGATGGACGCCAC-AGT-----C--GGCTAAT----CCAAAATATGTTTTACGTAGTTT---
gi|115044 : TT---CCATAGTTCGCAGCCGTATAAAGC-TTGCAAGAGGACAACAGTTTGATATAGATGTTTT--AC-TG----TA-ATTGGGTGTAAA-CC-ATTTTGATGGACGCCAC-AGTCGGCTC--AT---------CCAAAATATGTTTTACGTAATTT---
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|115033 ): TGTCTTATGATATATTTCCAAACATGTTTTGAAGGAAAGACACCCGATTCGATAAAACGTTCATAAATGTGAACTAAGTTGCAATGTCTTAATAAGTTATATATATCAGGAATAAACCCTCCTTTATTATACGGGTTGTCATTATAACGTATAAGTCTATTTAAAAATATATCTTTTGCCAAGAA
Alignments
lowQualScore : 111 11 1111 111111 111111 1111 1111 111111 333333333333333333 1 111 11 11 22222 1111
lowQualScore : 0 1 0 444 0 22 7 77 77 2 1 5 5 5 77 1 9999 66 4 99 2 777 777 55 55 4 4 999999 0000 77777 3 3 55 000000 55 55 55 3 1 1 55 000000 7 55 0000 666 4 0000 4 1 22 88888 2 3 3 000000 1 1 1 3 1 777 11 222222222222222222 4 55 777 55 4 1 55 000 1 0 1 2 1 1 6 11 00 1 33333 55 8888 3 9 1 8 0 2 55 55 44 1 9999 2 0 1 1 666 0
lowQualScore : . . . ... . .. . .. .. . . . . . .. . .... .. . .. . ... ... .. .. . . ...... .... ..... . . .. ...... .. .. .. . . . .. ...... . .. .... ... . .... . . .. ..... . . . ...... . . . . . ... .. .................. . .. ... .. . . .. ... . . . . . . . .. .. . ..... .. .... . . . . . . .. .. .. . .... . . . . ... .
lowQualScore : 8 4 6 000 8 99 9 99 66 7 7 7 7 7 99 0 4444 11 4 66 4 000 000 66 55 0 0 555555 8888 33333 6 6 88 555555 00 00 00 5 0 0 55 666666 3 55 3333 222 0 3333 0 0 00 00000 8 6 6 555555 2 0 0 9 0 000 66 111111111111111111 0 77 000 44 1 0 00 000 1 3 4 9 0 4 9 88 44 0 99999 66 6666 1 2 0 5 2 0 00 00 11 8 6666 9 4 0 4 444 8
consensus : AAAACAATCGACCCAAACTGTGTGTAAATTACCTTCCACAGTGCCTCGCGCAAATCTTCATTGGTTATACATTCAAATACAATGTGTATTGCTGGCGAGTTCACAACTGCACCGCACTTAAAACAATTCTGATAATAAGAATTACGAGAGTACAACATACTTAATAGCTTCATGGTACTCTGACATTCACCCAAAAGCAATGGATATCTTTTACTCAACATCCACAGTGCTGACGGAGAAAA---CACATCAGTAGCGGCAATGTATTCAGTAAGTTGAGGATCTTCTAGCATGGCTATTTGACGAACATTATTTTCGTATACGCGGATAGAATGTTTAATTATAGTTTTCCA-ACAGTATTTTGAT--GGGAA-ACTTCCGTCCTTTAAGA-AATC-A-TCGAATA--TATGTTGAAGACGATATTTTGCCAATACCCTATANATATCAGGAATGAATC----C--ACTTTTA-CGATATGGCGCATCGTT---A---TATCG-GACAAGTCTATTAAG--GAATATA-TT-CTTTG---CA-AGAAAA---TGACC--CTG-G-AGA-TT------ACACAATTGACC--AAAAA--A-TGTCAGTTTNCGGTAGTCNAT-CTC-----TGATTCTA-TAGACCT--ACTG--CCTA-C-C-AT---G-CNTAAAGNNACGT---GAGTCCGCGT-AT-TTGTA------GGAATGCCTTGCANANATTTAATGCACANTCG---ATGACANCGTTC-------CA--T------ATCT-AATAACTG---TG-CGCCATTNATGTAATT---CCATAGTTCGCAACCATATAGAGC-CTTNGGAAGAACAACGGATT--TATAAATATTNT--A--TGACGTTA-A-GGGGTGTAAG-CC-TTNCTCATGGACACCACTA--C--ATACGAC---GCCAAAAAATGCTCTNCGTAGTTT---ATTTGCGGCTTCGTTTA
Reference ( family-905 ) : AAAACAATCGACCCAAACTGTGTGTAAATTACCTTCCACAGTGCCTCGCGCAAATCTTCATTGGTTATACATTCAAATACAATGTGTATTGCTGGCGAGTTCACAACTGCACCGCACTTAAAACAATTCTGATAATAAGAATTACGAGAGTACAACATACTTAATAGCTTCATGGTACTCTGACATTCACCCAAAAGCAATGGATATCTTTTACTCAACATCCACAGTGCTGACGGAGAAAA---CACATCAGTAGCGGCAATGTATTCAGTAAGTTGAGGATCTTCTAGCATGGCTATTTGACGAACATTATTTTCGTATACGCGGATAGAATGTTTAATTATAGTTTTCCA-ACAGTATTTTGAT--GGGAA-ACTTCCGTCCTTTAAGA-AATC-A-TCGAATA--TATGTTGAAGACGATATTTTGCCAATACCCTATANATATCAGGAATGAATC----C--ACTTTTA-CGATATGGCGCGTCGTT---A---TATCG-GACAAGTCTATTAAG--GAATATA-TT-CTTTG---CA-AGAAAA---TGACC--CTG-G-AGA-TT------ACACAATTGACC--AAAAA--A-TGTCAGTTTNCGGTAGTCNAT-CTC-----TGATTCTA-TAGACCT--ACTG--CCTA-C-C-AT---G-CNTAAAGNNACGT---GAGTCCGCGT-AT-TTGTA------GGAATGCCTTGCANANATTTAATGCACANTCG---ATGACANCGTTC-------CA--T------ATCT-AATAACTG---TG-CGCCATTNATGTAATT---CCATAGTTCGCAACCATATAGAGC-CTTNGGAAGAACAACGGATT--TATAAATATTNT--A--TGACGTTA-A-GGGGTGTAAG-CC-TTNCTCATGGACACCACTA--C--ATACGAC---GCCAAAAAATGCTCTNCGTAGTTT---ATTTGCGGCTTCGTTTA
gi|115028 : AAAACAATCGACCCAAACTGTGTGTAAATTACCTTCCACAGTGCCTCGCGCAAATCTTCATTGGTTATACATTCAAATACAATGTGTATTGCTGGCGAGTTCACAACTGCACCGCACTTAAAACAATTCTGATAATAAGAATTACGAGAGTACAACATACTTGATAGCTTCATGGTACTCTGACATTCACCCAAAAGCAATGGATATCTTTTACTCAACATCCACAGTGCTGACGGAGAAAA---CACATCAGTAGCGGCAATGTATTCAGTAAGTTGAGGATCTTCTAGCATGGCTATTTGACGAACATTATTTTCGTATACGCGGATAGAATGTTTAATTATAGTTTTCCA-ACAGTATTTTGAT--GGGAA-ACTTCCATTCTTTAAGA-AATC-A-TCGAATA--TATGTTGAAGACGATATTTTGCCAATACCCTATAAATATCAGGAATTAATC----C--ACTTTTA-CGATATGGCGCATCGTT---A---TATCG-GACAAGTCTATTAAG--GAATATA-TT-CTTTG---CA-AGAAAA---TGACC--CTG-G-AGA-TT------ACACAGTTGACC--AAAAA--A-TGTCAGTTTACGGTAATCTAT-CTC-----TGATTCTA-TAGACCT--ACTG--CCTA-C-C-AT---G-CATAAAGAAACGT---GAGTCCGCGT-AT-TTGTA------GAAATGCCTTGCAAAAATTTAATGCACATTCG---ATGACAGCGTTC-------CA--T------ATCT-AATAACTG---TG-CGCCATTCATGTAATT---CCATAATTCGCAACCATAAAGAGC-CTTTGGAAGAACAACAGATT--TATAAATATTAT--A--TGACGTTA-A-GGGATGTAAG-CC-TTGCTCATGGACACCACTA--C--ATACAAC---GCCAAAAAATGCTCTTCTTAGTTT---ATTTGCGGCTTCGTTTA
gi|115029 : AAAACAATCGACCCAAACTGTGTGTAAATTACCTTCCACAGTGCCTCGCGCAAATCTTCATTGGTTATACATTCAAATACAATGTGTATTGCTGGTGAGTTCACAACTGCACCGCACTTAAAACAATTCTGATAATAAGAATTACGAGAGTACAACATACTTAATAGCTTCATGGTACTCTGACATTCACCCAAAAGCAATGGATATCTTTTACTCAACATCCACAGTGCTGACGGAGAAAA---CACATCAGTAGCGGCAATGTATTCAGTAAGTTGAGGATCTTCTAGCATGGCTATTTGACGAACATTATTTTCGTATACGCGGATAGAATGTTTAATTATAGTTTTCCA-ACAGTATTTTGAT--GGGAA-ACTTCCATCCTTTAAGA-AATC-A-TCGAATA--TATGTTGAAGACGATATTTTGCCAATACCCTATAAATATCAGGAATGAATC----C--ACTTTTA-CGATATGGCGCATCGTT---A---TATCG-GACAAGTCTATTAAG--GAATATA-TT-CTTTG---CA-AGAAAA---TGACC--CTG-G-AGA-TT------ACACAGTTGACC--AAAAA--A-TGTCAGTTTACGGTAATCTAT-CTC-----TGATTCTA-TAGACCT--ACTG--CCTA-C-C-AT---G-CATAAAGAAACGT---GAGTCCGCGT-AT-TTGTA------GAAATGCCTTGCAAAAATCTAATGCACATTCG---ATGACAGCGTTC-------CA--T------ATCT-AATAACTG---TG-CGCCATTCATGTAATT---CCATAATTCGCAACCATAAAGAGC-CTTTGGAAGAACAACAGATT--TATAAATATTAT--A--TGACGTTA-A-GGGATGTAAG-CC-TTGCTCATGGACACCACTA--C--ATACAAC---GCCAAAAAATGCTCTTCTTAGTTT---ATTTGCGGCTTCGTTTA
gi|115030 : AAAACAATCGACCCAAACTGTGTGTAAATTACCTTTCACAGTGCCTCGCGCAAATCTTCATTGGTTATATAT-CAAATACAATGTGTACTGCTGGCGAGTTTACAATTGCACCACACTTAAAACAATTCTGAAAATAAGAATTACGACAGTACAACATACTTAATAGCTTCTTGGTACTCTGACATTCACCCAAAAGCATTGAATATCTTTTACTCAACAGCCACAGTGCTGACAAAGAGAA---CACATCAGTAGCAGCAATGTATTCAGTAAGTTGAGGATCTTCTAGCATTGCTATTTGACGAACATTATTTTCGTATACGCGGATAGAATGTT-AATTATAGTTTCCCT-ACAGTATTTTGAT--GGCAA-ACTTCAATCCTTTAAGA-AATC-A-TCGAATA--TATGTTGAAGGCGATATTTTGCCAATACCCTACACAAATTAGGAATTAATC----C--ACTTTAA-CGATATGGGGCATCGTT---A---TATCG-GATAAGTCTATTAAG--GAATATA-TT-CTTTG---CA-AGAAAA---TGACC--CTG-G-AGA-TT------ACACAATTGACC--AAAAA--A-TGTCAGTTTACGGTAATATAT-ATG-----TGATTCTA-TAGACCT--ACTT--CCTA-C-C-AT---G-CATTAAGATACGT---GAGTGTGCGT-AT-TTGTA------GAAATGCTTTGCAAAAATTTAATGAACATTTG---ATGACAGCGTTC-------CA--T------ATCT-AATAACTG---TG-CGCCATCCATGTAATT---CAATAATTTGCAACCATAAAGAGC-CTTTGGAAGAACAACAGATT--TATGAATATTAT--A--TGACGTTA-A-GGGACGCAAG-CC-TTGCTCATGCACACCACTA--C--ATACAAC---GCCAAAAAA-GCTCTTCTTAGTTT---ATTTGCAGCTTCGTTTA
gi|115031 : AAAACAATCGACCCAAACTGTGTGTAAATTACCTTCCACAGTGCCTCGCGCAAATCTTCATTGGTTATACATTCAAATACAATGTGTATTGCTGGCGAGTTCACAACTGCACCGCACTTAAAACAATTCTGATAATAAGAATTACGAGAGTACAACATACTTAATAGCTTCATGGTAGTTTGACATTCACCCAAAAGCAATAGATATCTTTTACTCAACATCCACAGTGCTGACGGAGAAAA---CACATCAGTAGCGGCAATGTATTC---------------TTCTAGCATGGCTATTTGACGAACATTATTTTCGTATACGCGGATAGAATGTTTAATTATAGTTTTCCA-----------------------------TCCTTTAAGA-AATC-A-TCGAATA--TATGTTGAAGACGATATTTTGCCAATACCCTATAAATATCAGGAATGAATC----C--ACTTTTA-CGATATGGCGCATCGTT---A---TATCG-GACAAGTCTATTAAG--AATTATA-TT-CTTTG---TA-AGAAAA---TGACC--CTG-G-AGA-TT------ACACAGTTGACC--AAAA---A-TGTCAGTTTACGGTAATCTAT-CTC-----TGATTCTA-TAGACCT--ACTG--CCTA-C-C-AT---G-CATAAAGATACGT---GAGTTCGCGT-AT-TTGTA------GAAATGCCTTGCAAAAATTTAATGCACATTCG---ATGACAGCGTTC-------TT--T------ATCT-AATAACTG---TG-CGCCATTCATGTAATT---CCAAAATTCACAACCATAAAGAGC-CTTTGGAAGAACAACAGATT--TATAAATATTAT--A--TGACGTTA-A-GGGATGTAAG-CC-TTGCTCATGGACACCACTA--C--ATACAAC---GCCAAAAAAAGCTCTTCTTAGTTT---ATTTGCGGTTTCGTTTA
gi|115032 : AAAACAGCCGACCCAAACTGTGTGTAAATTTCCTTCCACAGTGCCTCGCACAAATCTTCATCGACTATACATTCAAAGGCAATATGTATTGCTGGCGAGTTTACAACTGCAAAACACTTAACACAATTCTGAAAATAAGAATCACGAGAATACAAAATACTTTATAGCTTCATGGTACTCTGACATTCACCCAAAAGCAATGGATATCTTTTACTCAACAGCCACAGCGCTGACGGAAAAAAAAACACATCAGAAGCGGCAATAAATTCAGTAAGTTGAGAATCTTCTAGCATGGCTATTTGGCATACATTATTTTCGTATACGCGGATTAAATGTTTAATTTTAGTTTTCCG-ACAGTATTTTGAT--GGGAA-TCGTCCATCCTTTATGA-AATT-A-TCGTATA--TATGTTGAAGACGATATTTTGCCAATACCCTAAAAATATCAGGAATGAATC----C--ACTGTTA-CGATATTGCTCATCGTT---A---TATCG-GAGAAGTCTATCAAG--GAATATA-TT-CTTTG---AA-AGGAAA---TAACC--CTT-G-AGA-TT------ACACAGTTGACC--AAAAA--A-TTTTAGTTTACGGTAGTCTAT-CTC-----TGATTCTA-TAGACCT--ACTG--CCTA-C-C-AT---G-CATAAAGAAACGT---GAGTCGACGT-AT-TTGTA------GAAATACC-TATAAATACTTA
gi|115034 : TGTCTAAGAATATATTTCCATGCA-TACTTGGAT--GGAAATATTGCTGT--TTTAGAATAATT-AACCAAATAATTATAT---AGATCATACTTCGTTAATATTCTATAGATGTCAGGAATAAAAC----CTAATGTTTG-TT-TAT----CATCACT---AAGATATTTTAACAA-----TTAAC--AAATA-A-TTGCTTAG---CA-ATATAC---TTATT--CGG-G-AGT-CT------GCATAATTGACC--AAAGA--ATTGT-AGCTTCCTGTAGTCGAT-TTC-----CGTTTCAAGTGAAGTT--AC-------A-C-CAATAGAG-CTTAAAGCAA-------AATC--CGT-AT-TTACATATTGTGGGATATTTTGGATAAATTTTATACAGAATCT---ATGTCCTCGTTC-------TAGTT------GTAT-AATATTTGATTTG-----GTTAATG-AATT---CCATAATTCACAACCATATAGGGA-TTTTGGTATTACGATTGACT--TAT--ATATTGTTAA--TGTTGTCA-A-GGGAT-TAAGACC-ATGCGGATGTAAGCCACTA--TTAATAAGAC----TTAAAAAAAG-TCCACGTAACTT---ATT
gi|115035 : TTTTCCA--TA-TATTTTGAGAAGGGAA-TTCTCCGGTTTTTGAAT-AGTCTG-TTAGATA--CTTGGTTAAGCCG-TACCGACCTAATAATCTATATATATCAGGCATGAATCCTTTC--ATTTTTAGGGGTATGGAAAAGTATG---A---TGT------AAGTCTAC--GG--GAAAATACTT-GTTT-----------AATTTTGAAT--TTT-G-AG--TTAAGCCGACACAATTGCCC--AAGTA--A-CAGTAATTTTCTCTTGTCAATAATA-----TG-TTTAA-TAGGGTA--AATA--CCCAGA-C-A----G-CTTAAGGCAATAT---CTGTTCTTG--ATCCTGTC------GGTATATTTTGAATACGCTTAACGCACTGTCG---ATGAGCCCGTTCTAGGGGACA--T------AACT-GAT---TG---TC-TG----TGAGATCATT---CCACAGTTCACTCCCATATAGTGC-TTTGGGAAGAACAACCGATT--CATATATACGCT--T--TGATGTTA-G-GGCGTGTATT-CCATTTCT-ATAAATTCCAC-AGTC--A-GCAAT---ACTGAAAAATGTTTTTCTTAATTT---
gi|115036 : TATATGTATCAGGAATAAACC----C--TCTTTTA-TTATACGGGTTGTCATT---A---TAACG-TATAAGTCTATTTAA--AAGTATA--T-ATTTG---CC-AAGAAA---TGA-G--ATG-GTAAA-TT------ACACAACTGGCCGAAAAAA--A-AGACAACTTTCTGTAATCAAT-TTCGCTTTTGATTGTATTGGACCC--A--------A-T-A-AG---A-CTTAACGCTACAT---CCGTCCTTGT-GT-TTGAG------GGAATGCCCTGTATATACTTTATACAAAATCT---ATGAGAACGTTC-------CA---------GTCT-TATTATT----TG-TG-CATTAGAAAGATCGGACCAAAATTCATAACCAAATAACGC-TTTAGGAAGTACAACTGATT--TAT--ATATTTT--AATTGAAGTAA-T-CGGGTTTAAC-CG-TTTTTCATGTTTACCACTA--C--TCATGAA---GCTAAAGAACGCTCACCGCAGTTT---
gi|115037 : ATATCATGAAAGAATT----C--ATTCTGA-CTACCTGG---GTCGTTTACA---TAATG-CATCAGTCTA--AAGAAGAAAATA-TC-TCTTG------AGAAG----TGGTCGACCGAG-AGC-CT------ACATAATTGACC--GAAAA--A-TATTAGTTTACGCTTGTCAAT-TTC-----ACACTCTA-
gi|115038 : T---A---TATTG-CACAAGTCGATTAAC--GAAAATA-TT-TTTTATTCCGTAGTAGT---TGTCA--ATG-------TG------ACACAATTGGCC--AAACATGA--GT-AGTTTTCGTTTGTCTAT-TTC-----ATATTCTA-TTGGCATTAAC----CCTA-TGC-AG---G-CT---AGTGCCGTTTTGC-TTTGCGTCAT-TT-TA------GGGAGGGATCGCATATGTTT--TGCACACT-GTACATGACCTCGCTC-------GAG-TG-----ACCG-AATG--TG---TG-TGTCTTTTATGGAATT---CCATAGCTCACAACCGTATAAAGC-CTTTGAAAGAACAATTGTTTCGTATAAACGCTT------TGAAGTGA-T-AGGGTGTAAA-CC-ATCTTTATAAATACCA--A--C--AT-CTGCTTAGCTAAAATATGTTTTACGTATTTT---
gi|115039 : ---CA-AGAAA----TGAGA---TG-G-TGAATT------ACACAATTGGCC--GAAAA--G-GGACAGCTTTCTGTAATCAAT-TTC-------GCTCT--TAATCGT--ATTGGACCCA-A-T-AA---GACTTAACGCTACAT---CTGTCCTTGT-GT-TTGAG------GGAATGCCCTGTATATACTTTATACAAAATCT---ATGAGAACGTTC-------CA---------GTCT-TATAATT----TG-TG-CATTAGAAAGATCGGACCAAAATTCACAACCAAATAACGC-TTTAGGAAGAACAACTGATT--TAT--ATATTTT--AATTGAAGTAA-T-CGGGTTTAAC-CC-TTTTTCATGTATACCACTA--C--TCATTAA---GCTAAAGAACGCTCCACGCAGTTTAGAATT---AGCTTCATT
gi|115040 : GTTCTTGT-AT-ATGTA------GGTAAGTTTTGAATAAATCTGATGCATAAACG---ATGGGCTCGTTCT------CA--TTTAACCATCTCAGTAA--G---TGACG----TAGTGT---T---TCA-AATTTACACTCATACAAAGC-TTTAGGAATAACGATATATT--TAT--ATATTGTCAA--TAAAGTTA-A-AGGAT
gi|115041 : TTATATCATT---CCATAGTTCACAACCAAATAGAGC-TCGTGGTAGGACAATGGACG--TGTAAA-GTTTT--GC-TGCCGTTATA-GGGTTG-ACG-CCATTACT-ATGGATACCGC
gi|115042 : TTATATCATT---CCATAGTTCACAACCAAAATGAGCGCGTAGTAAG-ACAATGGATG--TGT-AACGTTTT--GC-TGGCGTTA-T-AGGGTCGATG-CCGTTACT-ATGGATACCAC
gi|115043 : TT---CCATAGTTCGCAGCCGTATAAAGC-TCGCGAGAGGACAACAGTTTGATATAAATATTTT--AC-TG----TA-ATTGGGTGTAAA-CC-ATTTTGATGGACGCC---A--C--AGTCGGCTAATCCAAAATATGTTTTACGTAGTTT---
gi|115044 : TT---CCATAGTTCGCAGCCGTATAAAGC-TTGCAAGAGGACAACAGTTTGATATAGATGTTTT--AC-TG----TA-ATTGGGTGTAAA-CC-ATTTTGATGGACGCC---A--C--AGTCGGCTCATCCAAAATATGTTTTACGTAATTT---
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|115033 ): TGTCTTATGATATATTTCCAAACATGTTTTGAAGGAAAGACACCCGATTCGATAAAACGTTCATAAATGTGAACTAAGTTGCAATGTCTTAATAAGTTATATATATCAGGAATAAACCCTCCTTTATTATACGGGTTGTCATTATAACGTATAAGTCTATTTAAAAATATATCTTTTGCCAAGAA
Alignments
lowQualScore : 111 11 1111 111111 111111 1111 1111 111111 333333333333333333 1 111 11 11 22222 1111
lowQualScore : 0 1 0 444 0 22 7 77 77 2 1 5 5 5 77 1 9999 66 4 99 777 777 55 55 4 4 999999 0000 77777 3 3 55 000000 55 55 55 3 1 1 55 000000 7 55 0000 666 4 0000 4 1 22 88888 2 3 3 000000 1 1 1 3 1 777 11 222222222222222222 4 55 777 55 4 1 55 000 1 0 1 2 1 1 6 11 00 1 33333 55 8888 3 9 1 8 0 2 55 55 44 1 9999 2 0 1 1 666 0
lowQualScore : . . . ... . .. . .. .. . . . . . .. . .... .. . .. ... ... .. .. . . ...... .... ..... . . .. ...... .. .. .. . . . .. ...... . .. .... ... . .... . . .. ..... . . . ...... . . . . . ... .. .................. . .. ... .. . . .. ... . . . . . . . .. .. . ..... .. .... . . . . . . .. .. .. . .... . . . . ... .
lowQualScore : 8 4 6 000 8 99 9 99 66 7 7 7 7 7 99 0 4444 11 4 66 000 000 66 55 0 0 555555 8888 33333 6 6 88 555555 00 00 00 5 0 0 55 666666 3 55 3333 222 0 3333 0 0 00 00000 8 6 6 555555 2 0 0 9 0 000 66 111111111111111111 0 77 000 44 1 0 00 000 1 3 4 9 0 4 9 88 44 0 99999 66 6666 1 2 0 5 2 0 00 00 11 8 6666 9 4 0 4 444 8
consensus : AAAACAATCGACCCAAACTGTGTGTAAATTACCTTCCACAGTGCCTCGCGCAAATCTTCATTGGTTATACATTCAAATACAATGTGTATTGCTGGCGAGTTCACAACTGCACCGCACTTAAAACAATTCTGATAATAAGAATTACGAGAGTACAACATACTTAATAGCTTCATGGTACTCTGACATTCACCCAAAAGCAATGGATATCTTTTACTCAACATCCACAGTGCTGACGGAGAAAA---CACATCAGTAGCGGCAATGTATTCAGTAAGTTGAGGATCTTCTAGCATGGCTATTTGACGAACATTATTTTCGTATACGCGGATAGAATGTTTAATTATAGTTTTCCA-ACAGTATTTTGAT--GGGAA-ACTTCCGTCCTTTAAGA-AATC-A-TCGAATA--TATGTTGAAGACGATATTTTGCCAATACCCTATANATATCAGGAATGAATC----C--ACTTTTA-CGATATGGCGCATCGTT---A---TATCG-GACAAGTCTATTAAG--GAATATA-TT-CTTTG---CA-AGAAAA---TGACC--CTG-G-AGA-TT------ACACAATTGACC--AAAAA--A-TGTCAGTTTNCGGTAGTCNAT-CTC-----TGATTCTA-TAGACCT--ACTG--CCTA-C-C-AT---G-CNTAAAGNNACGT---GAGTCCGCGT-AT-TTGTA------GGAATGCCTTGCANANATTTAATGCACANTCG---ATGACANCGTTC-------CA--T------ATCT-AATAACTG---TG-CGCCATTNATGTAATT---CCATAGTTCGCAACCATATAGAGC-CTTNGGAAGAACAACGGATT--TATAAATATTNT--A--TGACGTTA-A-GGGGTGTAAG-CC-TTNCTCATGGACACCACTA--C--ATACGAC---GCCAAAAAATGCTCTNCGTAGTTT---ATTTGCGGCTTCGTTTA
Reference ( family-905 ) : AAAACAATCGACCCAAACTGTGTGTAAATTACCTTCCACAGTGCCTCGCGCAAATCTTCATTGGTTATACATTCAAATACAATGTGTATTGCTGGCGAGTTCACAACTGCACCGCACTTAAAACAATTCTGATAATAAGAATTACGAGAGTACAACATACTTAATAGCTTCATGGTACTCTGACATTCACCCAAAAGCAATGGATATCTTTTACTCAACATCCACAGTGCTGACGGAGAAAA---CACATCAGTAGCGGCAATGTATTCAGTAAGTTGAGGATCTTCTAGCATGGCTATTTGACGAACATTATTTTCGTATACGCGGATAGAATGTTTAATTATAGTTTTCCA-ACAGTATTTTGAT--GGGAA-ACTTCCGTCCTTTAAGA-AATC-A-TCGAATA--TATGTTGAAGACGATATTTTGCCAATACCCTATANATATCAGGAATGAATC----C--ACTTTTA-CGATATGGCGCATCGTT---A---TATCG-GACAAGTCTATTAAG--GAATATA-TT-CTTTG---CA-AGAAAA---TGACC--CTG-G-AGA-TT------ACACAATTGACC--AAAAA--A-TGTCAGTTTNCGGTAGTCNAT-CTC-----TGATTCTA-TAGACCT--ACTG--CCTA-C-C-AT---G-CNTAAAGNNACGT---GAGTCCGCGT-AT-TTGTA------GGAATGCCTTGCANANATTTAATGCACANTCG---ATGACANCGTTC-------CA--T------ATCT-AATAACTG---TG-CGCCATTNATGTAATT---CCATAGTTCGCAACCATATAGAGC-CTTNGGAAGAACAACGGATT--TATAAATATTNT--A--TGACGTTA-A-GGGGTGTAAG-CC-TTNCTCATGGACACCACTA--C--ATACGAC---GCCAAAAAATGCTCTNCGTAGTTT---ATTTGCGGCTTCGTTTA
gi|115028 : AAAACAATCGACCCAAACTGTGTGTAAATTACCTTCCACAGTGCCTCGCGCAAATCTTCATTGGTTATACATTCAAATACAATGTGTATTGCTGGCGAGTTCACAACTGCACCGCACTTAAAACAATTCTGATAATAAGAATTACGAGAGTACAACATACTTGATAGCTTCATGGTACTCTGACATTCACCCAAAAGCAATGGATATCTTTTACTCAACATCCACAGTGCTGACGGAGAAAA---CACATCAGTAGCGGCAATGTATTCAGTAAGTTGAGGATCTTCTAGCATGGCTATTTGACGAACATTATTTTCGTATACGCGGATAGAATGTTTAATTATAGTTTTCCA-ACAGTATTTTGAT--GGGAA-ACTTCCATTCTTTAAGA-AATC-A-TCGAATA--TATGTTGAAGACGATATTTTGCCAATACCCTATAAATATCAGGAATTAATC----C--ACTTTTA-CGATATGGCGCATCGTT---A---TATCG-GACAAGTCTATTAAG--GAATATA-TT-CTTTG---CA-AGAAAA---TGACC--CTG-G-AGA-TT------ACACAGTTGACC--AAAAA--A-TGTCAGTTTACGGTAATCTAT-CTC-----TGATTCTA-TAGACCT--ACTG--CCTA-C-C-AT---G-CATAAAGAAACGT---GAGTCCGCGT-AT-TTGTA------GAAATGCCTTGCAAAAATTTAATGCACATTCG---ATGACAGCGTTC-------CA--T------ATCT-AATAACTG---TG-CGCCATTCATGTAATT---CCATAATTCGCAACCATAAAGAGC-CTTTGGAAGAACAACAGATT--TATAAATATTAT--A--TGACGTTA-A-GGGATGTAAG-CC-TTGCTCATGGACACCACTA--C--ATACAAC---GCCAAAAAATGCTCTTCTTAGTTT---ATTTGCGGCTTCGTTTA
gi|115029 : AAAACAATCGACCCAAACTGTGTGTAAATTACCTTCCACAGTGCCTCGCGCAAATCTTCATTGGTTATACATTCAAATACAATGTGTATTGCTGGTGAGTTCACAACTGCACCGCACTTAAAACAATTCTGATAATAAGAATTACGAGAGTACAACATACTTAATAGCTTCATGGTACTCTGACATTCACCCAAAAGCAATGGATATCTTTTACTCAACATCCACAGTGCTGACGGAGAAAA---CACATCAGTAGCGGCAATGTATTCAGTAAGTTGAGGATCTTCTAGCATGGCTATTTGACGAACATTATTTTCGTATACGCGGATAGAATGTTTAATTATAGTTTTCCA-ACAGTATTTTGAT--GGGAA-ACTTCCATCCTTTAAGA-AATC-A-TCGAATA--TATGTTGAAGACGATATTTTGCCAATACCCTATAAATATCAGGAATGAATC----C--ACTTTTA-CGATATGGCGCATCGTT---A---TATCG-GACAAGTCTATTAAG--GAATATA-TT-CTTTG---CA-AGAAAA---TGACC--CTG-G-AGA-TT------ACACAGTTGACC--AAAAA--A-TGTCAGTTTACGGTAATCTAT-CTC-----TGATTCTA-TAGACCT--ACTG--CCTA-C-C-AT---G-CATAAAGAAACGT---GAGTCCGCGT-AT-TTGTA------GAAATGCCTTGCAAAAATCTAATGCACATTCG---ATGACAGCGTTC-------CA--T------ATCT-AATAACTG---TG-CGCCATTCATGTAATT---CCATAATTCGCAACCATAAAGAGC-CTTTGGAAGAACAACAGATT--TATAAATATTAT--A--TGACGTTA-A-GGGATGTAAG-CC-TTGCTCATGGACACCACTA--C--ATACAAC---GCCAAAAAATGCTCTTCTTAGTTT---ATTTGCGGCTTCGTTTA
gi|115030 : AAAACAATCGACCCAAACTGTGTGTAAATTACCTTTCACAGTGCCTCGCGCAAATCTTCATTGGTTATATAT-CAAATACAATGTGTACTGCTGGCGAGTTTACAATTGCACCACACTTAAAACAATTCTGAAAATAAGAATTACGACAGTACAACATACTTAATAGCTTCTTGGTACTCTGACATTCACCCAAAAGCATTGAATATCTTTTACTCAACAGCCACAGTGCTGACAAAGAGAA---CACATCAGTAGCAGCAATGTATTCAGTAAGTTGAGGATCTTCTAGCATTGCTATTTGACGAACATTATTTTCGTATACGCGGATAGAATGTT-AATTATAGTTTCCCT-ACAGTATTTTGAT--GGCAA-ACTTCAATCCTTTAAGA-AATC-A-TCGAATA--TATGTTGAAGGCGATATTTTGCCAATACCCTACACAAATTAGGAATTAATC----C--ACTTTAA-CGATATGGGGCATCGTT---A---TATCG-GATAAGTCTATTAAG--GAATATA-TT-CTTTG---CA-AGAAAA---TGACC--CTG-G-AGA-TT------ACACAATTGACC--AAAAA--A-TGTCAGTTTACGGTAATATAT-ATG-----TGATTCTA-TAGACCT--ACTT--CCTA-C-C-AT---G-CATTAAGATACGT---GAGTGTGCGT-AT-TTGTA------GAAATGCTTTGCAAAAATTTAATGAACATTTG---ATGACAGCGTTC-------CA--T------ATCT-AATAACTG---TG-CGCCATCCATGTAATT---CAATAATTTGCAACCATAAAGAGC-CTTTGGAAGAACAACAGATT--TATGAATATTAT--A--TGACGTTA-A-GGGACGCAAG-CC-TTGCTCATGCACACCACTA--C--ATACAAC---GCCAAAAAA-GCTCTTCTTAGTTT---ATTTGCAGCTTCGTTTA
gi|115031 : AAAACAATCGACCCAAACTGTGTGTAAATTACCTTCCACAGTGCCTCGCGCAAATCTTCATTGGTTATACATTCAAATACAATGTGTATTGCTGGCGAGTTCACAACTGCACCGCACTTAAAACAATTCTGATAATAAGAATTACGAGAGTACAACATACTTAATAGCTTCATGGTAGTTTGACATTCACCCAAAAGCAATAGATATCTTTTACTCAACATCCACAGTGCTGACGGAGAAAA---CACATCAGTAGCGGCAATGTATTC---------------TTCTAGCATGGCTATTTGACGAACATTATTTTCGTATACGCGGATAGAATGTTTAATTATAGTTTTCCA-----------------------------TCCTTTAAGA-AATC-A-TCGAATA--TATGTTGAAGACGATATTTTGCCAATACCCTATAAATATCAGGAATGAATC----C--ACTTTTA-CGATATGGCGCATCGTT---A---TATCG-GACAAGTCTATTAAG--AATTATA-TT-CTTTG---TA-AGAAAA---TGACC--CTG-G-AGA-TT------ACACAGTTGACC--AAAA---A-TGTCAGTTTACGGTAATCTAT-CTC-----TGATTCTA-TAGACCT--ACTG--CCTA-C-C-AT---G-CATAAAGATACGT---GAGTTCGCGT-AT-TTGTA------GAAATGCCTTGCAAAAATTTAATGCACATTCG---ATGACAGCGTTC-------TT--T------ATCT-AATAACTG---TG-CGCCATTCATGTAATT---CCAAAATTCACAACCATAAAGAGC-CTTTGGAAGAACAACAGATT--TATAAATATTAT--A--TGACGTTA-A-GGGATGTAAG-CC-TTGCTCATGGACACCACTA--C--ATACAAC---GCCAAAAAAAGCTCTTCTTAGTTT---ATTTGCGGTTTCGTTTA
gi|115032 : AAAACAGCCGACCCAAACTGTGTGTAAATTTCCTTCCACAGTGCCTCGCACAAATCTTCATCGACTATACATTCAAAGGCAATATGTATTGCTGGCGAGTTTACAACTGCAAAACACTTAACACAATTCTGAAAATAAGAATCACGAGAATACAAAATACTTTATAGCTTCATGGTACTCTGACATTCACCCAAAAGCAATGGATATCTTTTACTCAACAGCCACAGCGCTGACGGAAAAAAAAACACATCAGAAGCGGCAATAAATTCAGTAAGTTGAGAATCTTCTAGCATGGCTATTTGGCATACATTATTTTCGTATACGCGGATTAAATGTTTAATTTTAGTTTTCCG-ACAGTATTTTGAT--GGGAA-TCGTCCATCCTTTATGA-AATT-A-TCGTATA--TATGTTGAAGACGATATTTTGCCAATACCCTAAAAATATCAGGAATGAATC----C--ACTGTTA-CGATATTGCTCATCGTT---A---TATCG-GAGAAGTCTATCAAG--GAATATA-TT-CTTTG---AA-AGGAAA---TAACC--CTT-G-AGA-TT------ACACAGTTGACC--AAAAA--A-TTTTAGTTTACGGTAGTCTAT-CTC-----TGATTCTA-TAGACCT--ACTG--CCTA-C-C-AT---G-CATAAAGAAACGT---GAGTCGACGT-AT-TTGTA------GAAATACC-TATAAATACTTA
gi|115034 : TGTCTAAGAATATATTTCCATGCA-TACTTGGAT--GGAAATATTGCTGT--TTTAGAATAATT-AACCAAATAATTATAT---AGATCATACTTCGTTAATATTCTATAGATGTCAGGAATAAAAC----CTAATGTTTG-TT-TAT----CATCACT---AAGATATTTTAACAA-----TTAAC--AAATA-A-TTGCTTAG---CA-ATATAC---TTATT--CGG-G-AGT-CT------GCATAATTGACC--AAAGA--ATTGT-AGCTTCCTGTAGTCGAT-TTC-----CGTTTCAAGTGAAGTT--AC-------A-C-CAATAGAG-CTTAAAGCAA-------AATC--CGT-AT-TTACATATTGTGGGATATTTTGGATAAATTTTATACAGAATCT---ATGTCCTCGTTC-------TAGTT------GTAT-AATATTTGATTTG-----GTTAATG-AATT---CCATAATTCACAACCATATAGGGA-TTTTGGTATTACGATTGACT--TAT--ATATTGTTAA--TGTTGTCA-A-GGGAT-TAAGACC-ATGCGGATGTAAGCCACTA--TTAATAAGAC----TTAAAAAAAG-TCCACGTAACTT---ATT
gi|115035 : TTTTCCA--TA-TATTTTGAGAAGGGAA-TTCTCCGGTTTTTGAAT-AGTCTG-TTAGATA--CTTGGTTAAGCCG-TACCGACCTAATAATCTATATATATCAGGCATGAATCCTTTC--ATTTTTAGGGGTATGGAAAAGTATG---A---TGT------AAGTCTAC--GG--GAAAATACTT-GTTT-----------AATTTTGAAT--TTT-G-AG--TTAAGCCGACACAATTGCCC--AAGTA--A-CAGTAATTTTCTCTTGTCAATAATA-----TG-TTTAA-TAGGGTA--AATA--CCCAGA-C-A----G-CTTAAGGCAATAT---CTGTTCTTG--ATCCTGTC------GGTATATTTTGAATACGCTTAACGCACTGTCG---ATGAGCCCGTTCTAGGGGACA--T------AACT-GAT---TG---TC-TG----TGAGATCATT---CCACAGTTCACTCCCATATAGTGC-TTTGGGAAGAACAACCGATT--CATATATACGCT--T--TGATGTTA-G-GGCGTGTATT-CCATTTCT-ATAAATTCCAC-AGTC--A-GCAAT---ACTGAAAAATGTTTTTCTTAATTT---
gi|115036 : TATATGTATCAGGAATAAACC----C--TCTTTTA-TTATACGGGTTGTCATT---A---TAACG-TATAAGTCTATTTAA--AAGTATA--T-ATTTG---CC-AAGAAA---TGA-G--ATG-GTAAA-TT------ACACAACTGGCCGAAAAAA--A-AGACAACTTTCTGTAATCAAT-TTCGCTTTTGATTGTATTGGACCC--A--------A-T-A-AG---A-CTTAACGCTACAT---CCGTCCTTGT-GT-TTGAG------GGAATGCCCTGTATATACTTTATACAAAATCT---ATGAGAACGTTC-------CA---------GTCT-TATTATT----TG-TG-CATTAGAAAGATCGGACCAAAATTCATAACCAAATAACGC-TTTAGGAAGTACAACTGATT--TAT--ATATTTT--AATTGAAGTAA-T-CGGGTTTAAC-CG-TTTTTCATGTTTACCACTA--C--TCATGAA---GCTAAAGAACGCTCACCGCAGTTT---
gi|115037 : ATATCATGAAAGAATT----C--ATTCTGA-CTACCTGG---GTCGTTTACA---TAATG-CATCAGTCTA--AAGAAGAAAATA-TC-TCTTG------AGAAG----TGGTCGACCGAG-AGC-CT------ACATAATTGACC--GAAAA--A-TATTAGTTTACGCTTGTCAAT-TTC-----ACACTCTA-
gi|115038 : T---A---TATTG-CACAAGTCGATTAAC--GAAAATA-TT-TTTTATTCCGTAGTAGT---TGTCA--ATG-------TG------ACACAATTGGCC--AAACATGA--GT-AGTTTTCGTTTGTCTAT-TTC-----ATATTCTA-TTGGCATTAAC----CCTA-TGC-AG---G-CT---AGTGCCGTTTTGC-TTTGCGTCAT-TT-TA------GGGAGGGATCGCATATGTTT--TGCACACT-GTACATGACCTCGCTC-------GAG-TG-----ACCG-AATG--TG---TG-TGTCTTTTATGGAATT---CCATAGCTCACAACCGTATAAAGC-CTTTGAAAGAACAATTGTTTCGTATAAACGCTT------TGAAGTGA-T-AGGGTGTAAA-CC-ATCTTTATAAATACCA--A--C--AT-CTGCTTAGCTAAAATATGTTTTACGTATTTT---
gi|115039 : ---CA-AGAAA----TGAGA---TG-G-TGAATT------ACACAATTGGCC--GAAAA--G-GGACAGCTTTCTGTAATCAAT-TTC-------GCTCT--TAATCGT--ATTGGACCCA-A-T-AA---GACTTAACGCTACAT---CTGTCCTTGT-GT-TTGAG------GGAATGCCCTGTATATACTTTATACAAAATCT---ATGAGAACGTTC-------CA---------GTCT-TATAATT----TG-TG-CATTAGAAAGATCGGACCAAAATTCACAACCAAATAACGC-TTTAGGAAGAACAACTGATT--TAT--ATATTTT--AATTGAAGTAA-T-CGGGTTTAAC-CC-TTTTTCATGTATACCACTA--C--TCATTAA---GCTAAAGAACGCTCCACGCAGTTTAGAATT---AGCTTCATT
gi|115040 : GTTCTTGT-AT-ATGTA------GGTAAGTTTTGAATAAATCTGATGCATAAACG---ATGGGCTCGTTCT------CA--TTTAACCATCTCAGTAA--G---TGACG----TAGTGT---T---TCA-AATTTACACTCATACAAAGC-TTTAGGAATAACGATATATT--TAT--ATATTGTCAA--TAAAGTTA-A-AGGAT
gi|115041 : TTATATCATT---CCATAGTTCACAACCAAATAGAGC-TCGTGGTAGGACAATGGACG--TGTAAA-GTTTT--GC-TGCCGTTATA-GGGTTG-ACG-CCATTACT-ATGGATACCGC
gi|115042 : TTATATCATT---CCATAGTTCACAACCAAAATGAGCGCGTAGTAAG-ACAATGGATG--TGT-AACGTTTT--GC-TGGCGTTA-T-AGGGTCGATG-CCGTTACT-ATGGATACCAC
gi|115043 : TT---CCATAGTTCGCAGCCGTATAAAGC-TCGCGAGAGGACAACAGTTTGATATAAATATTTT--AC-TG----TA-ATTGGGTGTAAA-CC-ATTTTGATGGACGCC---A--C--AGTCGGCTAATCCAAAATATGTTTTACGTAGTTT---
gi|115044 : TT---CCATAGTTCGCAGCCGTATAAAGC-TTGCAAGAGGACAACAGTTTGATATAGATGTTTT--AC-TG----TA-ATTGGGTGTAAA-CC-ATTTTGATGGACGCC---A--C--AGTCGGCTCATCCAAAATATGTTTTACGTAATTT---
blockSeqs : T AAA TG G AA TA A C T T A AT A CTTT TA G CG TAC AGA TA AA C G TTCCGT ATTT TCGAC A T AA AAGCCG GA TG TT C A T AA GCTTTT G TA TGGA GA A TAGA A A AA TTTGC G C C TATTGT C A A A T TAC AG TAGGGGACAT C AC ATT AC C C TA GGA T A G T A A CG AA A TAA AC TAG A A G C T GT TA TA A TTAG T T T AGA
blockSeqs : A . A G . A A C . . . . C . . . GG . . G . . . CA A CCC . . A . . . T C A T C T T . TG TG . T . A AT GA G . . . C A A A T . AG TCATTTAACC . AC . C C C TA GGA T A . T A A GA GA A AAT AC ATT . A G C T . . TA A TAAT A T T .
blockSeqs : T . A G . A A C . . . . A . . . CG . . G . . . CA A CCC . . A . . . T C A T A T . . TT C . T . A AT GA G . . . C A A A T . AG TAGTT . AC . C C C TA . A A . T A A GA AA A AAT AC ATT . G G C T . . TA A TCAT A T T .
blockSeqs : A . A . . T G C . . . . A . . . CT . . G . . . TA A CCC . . A . . . T T A T C T . . TG C . T . A AA GA A . . . T A T A A . CT GAGTG . TT . C T A TC . T T . T T T . AT G CAA TT AG . . G G T . . TA G G T A G .
blockSeqs : . . . T G T . . . . G . . . AA . . G . . . AA A CCC . . A . . . T T C G C T . . TG C . T . T CA GA T . . . G T A T G . CC CAT . AT . T . G AG . C T . G A C . AA C GC AT AG . . T C T . . CA A G C T T .
blockSeqs : . . . . . . . . . . T . . . GT . . T . . . CA C TTC . . T . . . C C T A T C . . TA C . G . T CA CT T . . . A T C A A . AA CAT . AT . T . A GA . A T . A T T . AA T GC AA AG . . T T T . . CA G G T C G .
blockSeqs : T . . . . . . C . . . CC A ATT . . A . . . A T T A T T . . . C . G . T CT CC G . . . T T T T C . CT TTT . A . T . T AG . T T . T A T . AA T AC AA AG . . C C . . . GT T A C A G .
blockSeqs : . . . . . . C . . . CA T CAA . . C . . . T C A A T A . . . T . A . T TG CT T . . . C T T T A . AA CA . . . T . A TC . A T . A A T . AG T AC AA GG . . T G . . . GT T G T A G .
blockSeqs : . . . . . . . . GA . . . . . . G . T T T A . . . A . . . T CT A T . . . T T T G A . CT CA . . . . . A TC . T C . A A A . A G A AA TC . . A G . . . G G G T A G .
blockSeqs : . . GA . . . . . . . . T A T . . . . . . A T A . T A . T T . T G G . . T A CC TA . . A . . . . T G . . A G .
blockSeqs : T T . T A . A G G . . T A GC TC . . T .
blockSeqs : . T T . C G A . . T T . AA . . T .
blockSeqs : . . T . C . A . . T . . TA
blockSeqCons :
originalCons : AAAACAATCGACCCAAACTGTGTGTAAATTACCTTCCACAGTGCCTCGCGCAAATCTTCATTGGTTATACATTCAAATACAATGTGTATTGCTGGCGAGTTCACAACTGCACCGCACTTAAAACAATTCTGATAATAAGAATTACGAGAGTACAACATACTTAATAGCTTCATGGTACTCTGACATTCACCCAAAAGCAATGGATATCTTTTACTCAACATCCACAGTGCTGACGGAGAAAA---CACATCAGTAGCGGCAATGTATTCAGTAAGTTGAGGATCTTCTAGCATGGCTATTTGACGAACATTATTTTCGTATACGCGGATAGAATGTTTAATTATAGTTTTCCA-ACAGTATTTTGAT--GGGAA-ACTTCCGTCCTTTAAGA-AATC-A-TCGAATA--TATGTTGAAGACGATATTTTGCCAATACCCTATANATATCAGGAATGAATC----C--ACTTTTA-CGATATGGCGCATCGTT---A---TATCG-GACAAGTCTATTAAG--GAATATA-TT-CTTTG---CA-AGAAAA---TGACC--CTG-G-AGA-TT------ACACAATTGACC--AAAAA--A-TGTCAGTTTNCGGTAGTCNAT-CTC-----TGATTCTA-TAGACCT--ACTG--CCTA-C-C-AT---G-CNTAAAGNNACGT---GAGTCCGCGT-AT-TTGTA------GGAATGCCTTGCANANATTTAATGCACANTCG---ATGACANCGTTC-------CA--T------ATCT-AATAACTG---TG-CGCCATTNATGTAATT---CCATAGTTCGCAACCATATAGAGC-CTTNGGAAGAACAACGGATT--TATAAATATTNT--A--TGACGTTA-A-GGGGTGTAAG-CC-TTNCTCATGGACACCACTA--C--ATACGAC---GCCAAAAAATGCTCTNCGTAGTTT---ATTTGCGGCTTCGTTTA
finalCons : AAAACAATCGACCCAAACTGTGTGTAAATTACCTTCCACAGTGCCTCGCGCAAATCTTCATTGGTTATACATTCAAATACAATGTGTATTGCTGGCGAGTTCACAACTGCACCGCACTTAAAACAATTCTGATAATAAGAATTACGAGAGTACAACATACTTAATAGCTTCATGGTACTCTGACATTCACCCAAAAGCAATGGATATCTTTTACTCAACATCCACAGTGCTGACGGAGAAAA---CACATCAGTAGCGGCAATGTATTCAGTAAGTTGAGGATCTTCTAGCATGGCTATTTGACGAACATTATTTTCGTATACGCGGATAGAATGTTTAATTATAGTTTTCCA-ACAGTATTTTGAT--GGGAA-ACTTCCGTCCTTTAAGA-AATC-A-TCGAATA--TATGTTGAAGACGATATTTTGCCAATACCCTATANATATCAGGAATGAATC----C--ACTTTTA-CGATATGGCGCATCGTT---A---TATCG-GACAAGTCTATTAAG--GAATATA-TT-CTTTG---CA-AGAAAA---TGACC--CTG-G-AGA-TT------ACACAATTGACC--AAAAA--A-TGTCAGTTTNCGGTAGTCNAT-CTC-----TGATTCTA-TAGACCT--ACTG--CCTA-C-C-AT---G-CNTAAAGNNACGT---GAGTCCGCGT-AT-TTGTA------GGAATGCCTTGCANANATTTAATGCACANTCG---ATGACANCGTTC-------CA--T------ATCT-AATAACTG---TG-CGCCATTNATGTAATT---CCATAGTTCGCAACCATATAGAGC-CTTNGGAAGAACAACGGATT--TATAAATATTNT--A--TGACGTTA-A-GGGGTGTAAG-CC-TTNCTCATGGACACCACTA--C--ATACGAC---GCCAAAAAATGCTCTNCGTAGTTT---ATTTGCGGCTTCGTTTA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|115033 ): TGTCTTATGATATATTTCCAAACATGTTTTGAAGGAAAGACACCCGATTCGATAAAACGTTCATAAATGTGAACTAAGTTGCAATGTCTTAATAAGTTATATATATCAGGAATAAACCCTCCTTTATTATACGGGTTGTCATTATAACGTATAAGTCTATTTAAAAATATATCTTTTGCCAAGAA
Alignments
lowQualScore : 111 11 1111 111111 111111 1111 1111 111111 333333333333333333 1 111 11 11 22222 1111
lowQualScore : 0 1 0 444 0 22 7 77 77 2 1 5 5 5 77 1 9999 66 4 99 777 777 55 55 4 4 999999 0000 77777 3 3 55 000000 55 55 55 3 1 1 55 000000 7 55 0000 666 4 0000 4 1 22 88888 2 3 3 000000 1 1 1 3 1 777 11 222222222222222222 4 55 777 55 4 1 55 000 1 0 1 2 1 1 6 11 00 1 33333 55 8888 3 9 1 8 0 2 55 55 44 1 9999 2 0 1 1 666 0
lowQualScore : . . . ... . .. . .. .. . . . . . .. . .... .. . .. ... ... .. .. . . ...... .... ..... . . .. ...... .. .. .. . . . .. ...... . .. .... ... . .... . . .. ..... . . . ...... . . . . . ... .. .................. . .. ... .. . . .. ... . . . . . . . .. .. . ..... .. .... . . . . . . .. .. .. . .... . . . . ... .
lowQualScore : 8 4 6 000 8 99 9 99 66 7 7 7 7 7 99 0 4444 11 4 66 000 000 66 55 0 0 555555 8888 33333 6 6 88 555555 00 00 00 5 0 0 55 666666 3 55 3333 222 0 3333 0 0 00 00000 8 6 6 555555 2 0 0 9 0 000 66 111111111111111111 0 77 000 44 1 0 00 000 1 3 4 9 0 4 9 88 44 0 99999 66 6666 1 2 0 5 2 0 00 00 11 8 6666 9 4 0 4 444 8
consensus : AAAACAATCGACCCAAACTGTGTGTAAATTACCTTCCACAGTGCCTCGCGCAAATCTTCATTGGTTATACATTCAAATACAATGTGTATTGCTGGCGAGTTCACAACTGCACCGCACTTAAAACAATTCTGATAATAAGAATTACGAGAGTACAACATACTTAATAGCTTCATGGTACTCTGACATTCACCCAAAAGCAATGGATATCTTTTACTCAACATCCACAGTGCTGACGGAGAAAA---CACATCAGTAGCGGCAATGTATTCAGTAAGTTGAGGATCTTCTAGCATGGCTATTTGACGAACATTATTTTCGTATACGCGGATAGAATGTTTAATTATAGTTTTCCA-ACAGTATTTTGAT--GGGAA-ACTTCCGTCCTTTAAGA-AATC-A-TCGAATA--TATGTTGAAGACGATATTTTGCCAATACCCTATANATATCAGGAATGAATC----C--ACTTTTA-CGATATGGCGCATCGTT---A---TATCG-GACAAGTCTATTAAG--GAATATA-TT-CTTTG---CA-AGAAAA---TGACC--CTG-G-AGA-TT------ACACAATTGACC--AAAAA--A-TGTCAGTTTNCGGTAGTCNAT-CTC-----TGATTCTA-TAGACCT--ACTG--CCTA-C-C-AT---G-CNTAAAGNNACGT---GAGTCCGCGT-AT-TTGTA------GGAATGCCTTGCANANATTTAATGCACANTCG---ATGACANCGTTC-------CA--T------ATCT-AATAACTG---TG-CGCCATTNATGTAATT---CCATAGTTCGCAACCATATAGAGC-CTTNGGAAGAACAACGGATT--TATAAATATTNT--A--TGACGTTA-A-GGGGTGTAAG-CC-TTNCTCATGGACACCACTA--C--ATACGAC---GCCAAAAAATGCTCTNCGTAGTTT---ATTTGCGGCTTCGTTTA
Reference ( family-905 ) : AAAACAATCGACCCAAACTGTGTGTAAATTACCTTCCACAGTGCCTCGCGCAAATCTTCATTGGTTATACATTCAAATACAATGTGTATTGCTGGCGAGTTCACAACTGCACCGCACTTAAAACAATTCTGATAATAAGAATTACGAGAGTACAACATACTTAATAGCTTCATGGTACTCTGACATTCACCCAAAAGCAATGGATATCTTTTACTCAACATCCACAGTGCTGACGGAGAAAA---CACATCAGTAGCGGCAATGTATTCAGTAAGTTGAGGATCTTCTAGCATGGCTATTTGACGAACATTATTTTCGTATACGCGGATAGAATGTTTAATTATAGTTTTCCA-ACAGTATTTTGAT--GGGAA-ACTTCCGTCCTTTAAGA-AATC-A-TCGAATA--TATGTTGAAGACGATATTTTGCCAATACCCTATANATATCAGGAATGAATC----C--ACTTTTA-CGATATGGCGCATCGTT---A---TATCG-GACAAGTCTATTAAG--GAATATA-TT-CTTTG---CA-AGAAAA---TGACC--CTG-G-AGA-TT------ACACAATTGACC--AAAAA--A-TGTCAGTTTNCGGTAGTCNAT-CTC-----TGATTCTA-TAGACCT--ACTG--CCTA-C-C-AT---G-CNTAAAGNNACGT---GAGTCCGCGT-AT-TTGTA------GGAATGCCTTGCANANATTTAATGCACANTCG---ATGACANCGTTC-------CA--T------ATCT-AATAACTG---TG-CGCCATTNATGTAATT---CCATAGTTCGCAACCATATAGAGC-CTTNGGAAGAACAACGGATT--TATAAATATTNT--A--TGACGTTA-A-GGGGTGTAAG-CC-TTNCTCATGGACACCACTA--C--ATACGAC---GCCAAAAAATGCTCTNCGTAGTTT---ATTTGCGGCTTCGTTTA
gi|115028 : AAAACAATCGACCCAAACTGTGTGTAAATTACCTTCCACAGTGCCTCGCGCAAATCTTCATTGGTTATACATTCAAATACAATGTGTATTGCTGGCGAGTTCACAACTGCACCGCACTTAAAACAATTCTGATAATAAGAATTACGAGAGTACAACATACTTGATAGCTTCATGGTACTCTGACATTCACCCAAAAGCAATGGATATCTTTTACTCAACATCCACAGTGCTGACGGAGAAAA---CACATCAGTAGCGGCAATGTATTCAGTAAGTTGAGGATCTTCTAGCATGGCTATTTGACGAACATTATTTTCGTATACGCGGATAGAATGTTTAATTATAGTTTTCCA-ACAGTATTTTGAT--GGGAA-ACTTCCATTCTTTAAGA-AATC-A-TCGAATA--TATGTTGAAGACGATATTTTGCCAATACCCTATAAATATCAGGAATTAATC----C--ACTTTTA-CGATATGGCGCATCGTT---A---TATCG-GACAAGTCTATTAAG--GAATATA-TT-CTTTG---CA-AGAAAA---TGACC--CTG-G-AGA-TT------ACACAGTTGACC--AAAAA--A-TGTCAGTTTACGGTAATCTAT-CTC-----TGATTCTA-TAGACCT--ACTG--CCTA-C-C-AT---G-CATAAAGAAACGT---GAGTCCGCGT-AT-TTGTA------GAAATGCCTTGCAAAAATTTAATGCACATTCG---ATGACAGCGTTC-------CA--T------ATCT-AATAACTG---TG-CGCCATTCATGTAATT---CCATAATTCGCAACCATAAAGAGC-CTTTGGAAGAACAACAGATT--TATAAATATTAT--A--TGACGTTA-A-GGGATGTAAG-CC-TTGCTCATGGACACCACTA--C--ATACAAC---GCCAAAAAATGCTCTTCTTAGTTT---ATTTGCGGCTTCGTTTA
gi|115029 : AAAACAATCGACCCAAACTGTGTGTAAATTACCTTCCACAGTGCCTCGCGCAAATCTTCATTGGTTATACATTCAAATACAATGTGTATTGCTGGTGAGTTCACAACTGCACCGCACTTAAAACAATTCTGATAATAAGAATTACGAGAGTACAACATACTTAATAGCTTCATGGTACTCTGACATTCACCCAAAAGCAATGGATATCTTTTACTCAACATCCACAGTGCTGACGGAGAAAA---CACATCAGTAGCGGCAATGTATTCAGTAAGTTGAGGATCTTCTAGCATGGCTATTTGACGAACATTATTTTCGTATACGCGGATAGAATGTTTAATTATAGTTTTCCA-ACAGTATTTTGAT--GGGAA-ACTTCCATCCTTTAAGA-AATC-A-TCGAATA--TATGTTGAAGACGATATTTTGCCAATACCCTATAAATATCAGGAATGAATC----C--ACTTTTA-CGATATGGCGCATCGTT---A---TATCG-GACAAGTCTATTAAG--GAATATA-TT-CTTTG---CA-AGAAAA---TGACC--CTG-G-AGA-TT------ACACAGTTGACC--AAAAA--A-TGTCAGTTTACGGTAATCTAT-CTC-----TGATTCTA-TAGACCT--ACTG--CCTA-C-C-AT---G-CATAAAGAAACGT---GAGTCCGCGT-AT-TTGTA------GAAATGCCTTGCAAAAATCTAATGCACATTCG---ATGACAGCGTTC-------CA--T------ATCT-AATAACTG---TG-CGCCATTCATGTAATT---CCATAATTCGCAACCATAAAGAGC-CTTTGGAAGAACAACAGATT--TATAAATATTAT--A--TGACGTTA-A-GGGATGTAAG-CC-TTGCTCATGGACACCACTA--C--ATACAAC---GCCAAAAAATGCTCTTCTTAGTTT---ATTTGCGGCTTCGTTTA
gi|115030 : AAAACAATCGACCCAAACTGTGTGTAAATTACCTTTCACAGTGCCTCGCGCAAATCTTCATTGGTTATATAT-CAAATACAATGTGTACTGCTGGCGAGTTTACAATTGCACCACACTTAAAACAATTCTGAAAATAAGAATTACGACAGTACAACATACTTAATAGCTTCTTGGTACTCTGACATTCACCCAAAAGCATTGAATATCTTTTACTCAACAGCCACAGTGCTGACAAAGAGAA---CACATCAGTAGCAGCAATGTATTCAGTAAGTTGAGGATCTTCTAGCATTGCTATTTGACGAACATTATTTTCGTATACGCGGATAGAATGTT-AATTATAGTTTCCCT-ACAGTATTTTGAT--GGCAA-ACTTCAATCCTTTAAGA-AATC-A-TCGAATA--TATGTTGAAGGCGATATTTTGCCAATACCCTACACAAATTAGGAATTAATC----C--ACTTTAA-CGATATGGGGCATCGTT---A---TATCG-GATAAGTCTATTAAG--GAATATA-TT-CTTTG---CA-AGAAAA---TGACC--CTG-G-AGA-TT------ACACAATTGACC--AAAAA--A-TGTCAGTTTACGGTAATATAT-ATG-----TGATTCTA-TAGACCT--ACTT--CCTA-C-C-AT---G-CATTAAGATACGT---GAGTGTGCGT-AT-TTGTA------GAAATGCTTTGCAAAAATTTAATGAACATTTG---ATGACAGCGTTC-------CA--T------ATCT-AATAACTG---TG-CGCCATCCATGTAATT---CAATAATTTGCAACCATAAAGAGC-CTTTGGAAGAACAACAGATT--TATGAATATTAT--A--TGACGTTA-A-GGGACGCAAG-CC-TTGCTCATGCACACCACTA--C--ATACAAC---GCCAAAAAA-GCTCTTCTTAGTTT---ATTTGCAGCTTCGTTTA
gi|115031 : AAAACAATCGACCCAAACTGTGTGTAAATTACCTTCCACAGTGCCTCGCGCAAATCTTCATTGGTTATACATTCAAATACAATGTGTATTGCTGGCGAGTTCACAACTGCACCGCACTTAAAACAATTCTGATAATAAGAATTACGAGAGTACAACATACTTAATAGCTTCATGGTAGTTTGACATTCACCCAAAAGCAATAGATATCTTTTACTCAACATCCACAGTGCTGACGGAGAAAA---CACATCAGTAGCGGCAATGTATTC---------------TTCTAGCATGGCTATTTGACGAACATTATTTTCGTATACGCGGATAGAATGTTTAATTATAGTTTTCCA-----------------------------TCCTTTAAGA-AATC-A-TCGAATA--TATGTTGAAGACGATATTTTGCCAATACCCTATAAATATCAGGAATGAATC----C--ACTTTTA-CGATATGGCGCATCGTT---A---TATCG-GACAAGTCTATTAAG--AATTATA-TT-CTTTG---TA-AGAAAA---TGACC--CTG-G-AGA-TT------ACACAGTTGACC--AAAA---A-TGTCAGTTTACGGTAATCTAT-CTC-----TGATTCTA-TAGACCT--ACTG--CCTA-C-C-AT---G-CATAAAGATACGT---GAGTTCGCGT-AT-TTGTA------GAAATGCCTTGCAAAAATTTAATGCACATTCG---ATGACAGCGTTC-------TT--T------ATCT-AATAACTG---TG-CGCCATTCATGTAATT---CCAAAATTCACAACCATAAAGAGC-CTTTGGAAGAACAACAGATT--TATAAATATTAT--A--TGACGTTA-A-GGGATGTAAG-CC-TTGCTCATGGACACCACTA--C--ATACAAC---GCCAAAAAAAGCTCTTCTTAGTTT---ATTTGCGGTTTCGTTTA
gi|115032 : AAAACAGCCGACCCAAACTGTGTGTAAATTTCCTTCCACAGTGCCTCGCACAAATCTTCATCGACTATACATTCAAAGGCAATATGTATTGCTGGCGAGTTTACAACTGCAAAACACTTAACACAATTCTGAAAATAAGAATCACGAGAATACAAAATACTTTATAGCTTCATGGTACTCTGACATTCACCCAAAAGCAATGGATATCTTTTACTCAACAGCCACAGCGCTGACGGAAAAAAAAACACATCAGAAGCGGCAATAAATTCAGTAAGTTGAGAATCTTCTAGCATGGCTATTTGGCATACATTATTTTCGTATACGCGGATTAAATGTTTAATTTTAGTTTTCCG-ACAGTATTTTGAT--GGGAA-TCGTCCATCCTTTATGA-AATT-A-TCGTATA--TATGTTGAAGACGATATTTTGCCAATACCCTAAAAATATCAGGAATGAATC----C--ACTGTTA-CGATATTGCTCATCGTT---A---TATCG-GAGAAGTCTATCAAG--GAATATA-TT-CTTTG---AA-AGGAAA---TAACC--CTT-G-AGA-TT------ACACAGTTGACC--AAAAA--A-TTTTAGTTTACGGTAGTCTAT-CTC-----TGATTCTA-TAGACCT--ACTG--CCTA-C-C-AT---G-CATAAAGAAACGT---GAGTCGACGT-AT-TTGTA------GAAATACC-TATAAATACTTA
gi|115034 : TGTCTAAGAATATATTTCCATGCA-TACTTGGAT--GGAAATATTGCTGT--TTTAGAATAATT-AACCAAATAATTATAT---AGATCATACTTCGTTAATATTCTATAGATGTCAGGAATAAAAC----CTAATGTTTG-TT-TAT----CATCACT---AAGATATTTTAACAA-----TTAAC--AAATA-A-TTGCTTAG---CA-ATATAC---TTATT--CGG-G-AGT-CT------GCATAATTGACC--AAAGA--ATTGT-AGCTTCCTGTAGTCGAT-TTC-----CGTTTCAAGTGAAGTT--AC-------A-C-CAATAGAG-CTTAAAGCAA-------AATC--CGT-AT-TTACATATTGTGGGATATTTTGGATAAATTTTATACAGAATCT---ATGTCCTCGTTC-------TAGTT------GTAT-AATATTTGATTTG-----GTTAATG-AATT---CCATAATTCACAACCATATAGGGA-TTTTGGTATTACGATTGACT--TAT--ATATTGTTAA--TGTTGTCA-A-GGGAT-TAAGACC-ATGCGGATGTAAGCCACTA--TTAATAAGAC----TTAAAAAAAG-TCCACGTAACTT---ATT
gi|115035 : TTTTCCA--TA-TATTTTGAGAAGGGAA-TTCTCCGGTTTTTGAAT-AGTCTG-TTAGATA--CTTGGTTAAGCCG-TACCGACCTAATAATCTATATATATCAGGCATGAATCCTTTC--ATTTTTAGGGGTATGGAAAAGTATG---A---TGT------AAGTCTAC--GG--GAAAATACTT-GTTT-----------AATTTTGAAT--TTT-G-AG--TTAAGCCGACACAATTGCCC--AAGTA--A-CAGTAATTTTCTCTTGTCAATAATA-----TG-TTTAA-TAGGGTA--AATA--CCCAGA-C-A----G-CTTAAGGCAATAT---CTGTTCTTG--ATCCTGTC------GGTATATTTTGAATACGCTTAACGCACTGTCG---ATGAGCCCGTTCTAGGGGACA--T------AACT-GAT---TG---TC-TG----TGAGATCATT---CCACAGTTCACTCCCATATAGTGC-TTTGGGAAGAACAACCGATT--CATATATACGCT--T--TGATGTTA-G-GGCGTGTATT-CCATTTCT-ATAAATTCCAC-AGTC--A-GCAAT---ACTGAAAAATGTTTTTCTTAATTT---
gi|115036 : TATATGTATCAGGAATAAACC----C--TCTTTTA-TTATACGGGTTGTCATT---A---TAACG-TATAAGTCTATTTAA--AAGTATA--T-ATTTG---CC-AAGAAA---TGA-G--ATG-GTAAA-TT------ACACAACTGGCCGAAAAAA--A-AGACAACTTTCTGTAATCAAT-TTCGCTTTTGATTGTATTGGACCC--A--------A-T-A-AG---A-CTTAACGCTACAT---CCGTCCTTGT-GT-TTGAG------GGAATGCCCTGTATATACTTTATACAAAATCT---ATGAGAACGTTC-------CA---------GTCT-TATTATT----TG-TG-CATTAGAAAGATCGGACCAAAATTCATAACCAAATAACGC-TTTAGGAAGTACAACTGATT--TAT--ATATTTT--AATTGAAGTAA-T-CGGGTTTAAC-CG-TTTTTCATGTTTACCACTA--C--TCATGAA---GCTAAAGAACGCTCACCGCAGTTT---
gi|115037 : ATATCATGAAAGAATT----C--ATTCTGA-CTACCTGG---GTCGTTTACA---TAATG-CATCAGTCTA--AAGAAGAAAATA-TC-TCTTG------AGAAG----TGGTCGACCGAG-AGC-CT------ACATAATTGACC--GAAAA--A-TATTAGTTTACGCTTGTCAAT-TTC-----ACACTCTA-
gi|115038 : T---A---TATTG-CACAAGTCGATTAAC--GAAAATA-TT-TTTTATTCCGTAGTAGT---TGTCA--ATG-------TG------ACACAATTGGCC--AAACATGA--GT-AGTTTTCGTTTGTCTAT-TTC-----ATATTCTA-TTGGCATTAAC----CCTA-TGC-AG---G-CT---AGTGCCGTTTTGC-TTTGCGTCAT-TT-TA------GGGAGGGATCGCATATGTTT--TGCACACT-GTACATGACCTCGCTC-------GAG-TG-----ACCG-AATG--TG---TG-TGTCTTTTATGGAATT---CCATAGCTCACAACCGTATAAAGC-CTTTGAAAGAACAATTGTTTCGTATAAACGCTT------TGAAGTGA-T-AGGGTGTAAA-CC-ATCTTTATAAATACCA--A--C--AT-CTGCTTAGCTAAAATATGTTTTACGTATTTT---
gi|115039 : ---CA-AGAAA----TGAGA---TG-G-TGAATT------ACACAATTGGCC--GAAAA--G-GGACAGCTTTCTGTAATCAAT-TTC-------GCTCT--TAATCGT--ATTGGACCCA-A-T-AA---GACTTAACGCTACAT---CTGTCCTTGT-GT-TTGAG------GGAATGCCCTGTATATACTTTATACAAAATCT---ATGAGAACGTTC-------CA---------GTCT-TATAATT----TG-TG-CATTAGAAAGATCGGACCAAAATTCACAACCAAATAACGC-TTTAGGAAGAACAACTGATT--TAT--ATATTTT--AATTGAAGTAA-T-CGGGTTTAAC-CC-TTTTTCATGTATACCACTA--C--TCATTAA---GCTAAAGAACGCTCCACGCAGTTTAGAATT---AGCTTCATT
gi|115040 : GTTCTTGT-AT-ATGTA------GGTAAGTTTTGAATAAATCTGATGCATAAACG---ATGGGCTCGTTCT------CA--TTTAACCATCTCAGTAA--G---TGACG----TAGTGT---T---TCA-AATTTACACTCATACAAAGC-TTTAGGAATAACGATATATT--TAT--ATATTGTCAA--TAAAGTTA-A-AGGAT
gi|115041 : TTATATCATT---CCATAGTTCACAACCAAATAGAGC-TCGTGGTAGGACAATGGACG--TGTAAA-GTTTT--GC-TGCCGTTATA-GGGTTG-ACG-CCATTACT-ATGGATACCGC
gi|115042 : TTATATCATT---CCATAGTTCACAACCAAAATGAGCGCGTAGTAAG-ACAATGGATG--TGT-AACGTTTT--GC-TGGCGTTA-T-AGGGTCGATG-CCGTTACT-ATGGATACCAC
gi|115043 : TT---CCATAGTTCGCAGCCGTATAAAGC-TCGCGAGAGGACAACAGTTTGATATAAATATTTT--AC-TG----TA-ATTGGGTGTAAA-CC-ATTTTGATGGACGCC---A--C--AGTCGGCTAATCCAAAATATGTTTTACGTAGTTT---
gi|115044 : TT---CCATAGTTCGCAGCCGTATAAAGC-TTGCAAGAGGACAACAGTTTGATATAGATGTTTT--AC-TG----TA-ATTGGGTGTAAA-CC-ATTTTGATGGACGCC---A--C--AGTCGGCTCATCCAAAATATGTTTTACGTAATTT---
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|115033 ): TGTCTTATGATATATTTCCAAACATGTTTTGAAGGAAAGACACCCGATTCGATAAAACGTTCATAAATGTGAACTAAGTTGCAATGTCTTAATAAGTTATATATATCAGGAATAAACCCTCCTTTATTATACGGGTTGTCATTATAACGTATAAGTCTATTTAAAAATATATCTTTTGCCAAGAA