lowQualScore : 222222222222222222 111111111111111111 11111 22 11
lowQualScore : 5 0 6 88888 44 3 3 44 6666 222222222222222222 999999999999999999 2 555 2 2 0 11111 3 44 1 999 2 6 33 4 2 00 6666 33 77 2 3 0
lowQualScore : . . . ..... .. . . .. .... .................. .................. . ... . . . ..... . .. . ... . . .. . . .. .... .. .. . . .
lowQualScore : 0 3 0 33333 66 3 3 66 5555 777777777777777777 777777777777777777 7 888 9 9 7 11111 6 66 5 666 9 6 99 8 9 11 1111 99 33 9 4 4
consensus : TTTAA-CATAGATTAAAGCGTTTTCGTTCATTGGAAATACCCGG-----A--TG-T-GGT--GA----CGGTC------------------AAAATTT------------------GG-TTACTGTGGTCCCGTTTATG--CGG-GATATTT-AGGGGAT--A-GGGAAAAAAAG-AATTTTTAAGAAT-AATCT--ATTNGTGTTTACTTTTATA-AAATTGGTATTCATTTGGAA----ATAC--ACAAAT-ACT-ATATGAAAAATATAATTT
Reference ( gi|141940 ) : TTTAA-CATAGATTAAAGCATCTTCGTTCATTGGAAATACCCGG-----A--TG-T-GGT--GA----CGGTC------------------AAAATTT------------------GG-TTACTGTGGTCCCGTTTATG--CAG-GATATTT-AGGGGAT--A-GGGAAAAAAAG-AATTTTTAGGGAT-AATCT--ATTTGTGTTTACTTTTATA-AAATTGTTATTCATTTGGAA----ATAC--ACAAAT-TCT-ATATGAAAAATATAATTT
gi|141942 : TTTAAACATAGATTAAAGCATTTTCGTTCATTGGAAATACATGG-----A--TG-T-GGT--GA----CTGTC------------------AAAATTT------------------GG-TTACAGTGGTCCAGTTTATG--CAG-GATATTT-AGGGGAC--A-GGGAAAAAAAG-AATTTTTAAGAAT-AACCT--ATTTGTGTTTACTTTT-TT-AAATTGGTATTCATTTGGAA----ATAC--AAAAAT-TCT-ATATGAAAAATATAATTT
gi|141941 : TTTAA-CAAAGATTTAAG--TTTTCGTTCATTAGAAATACACAG-----A--TG-T-GGT--GA----CGGTC------------------AAAGTTT------------------GG-TTACTGTAGTCCCATTTATG--CAG-GATATTT-AGGGGAT--A-GGGAAAAAAAG-AATTTTTAAGAAT-AATCT--ATTTGTGTTTACTTTTATA-AAACTGGTATTCATTTGGAA----ACAC--ACAAAT-ACT-ATATGAAAAATATAATTT
gi|141943 : TTTGA-CATAGATTAAAGTGCTTTTGTTCATTGCAAATACCTGG-----A--TG-T-GGT--GA----CGGTC-------------------AAATTT------------------GG-TTACTGTGGTCCCGTTTATG--CAG-GATATTT-AGGGGAC--AGGGGGAAAAAAG-AATTTTTAAGAAT-AATCT--ATCTGTGTTTACTTTTATA-AAATTGGTATTCATTTGGAA----ATAC--ACAAAT-ACT-ATATGAAAAATTTAATTT
gi|141944 : TTTAA-CATAGATTAAAGCGTTTATGTTCATTGGAAATACCCGG-----A--TG-T-GGT--GC----TGGTA------------------AAAATTT------------------GG-TTACTGTGGTCCCGTTTATA--CAG-GATATAT-AGGGGAC--A-GGGGAAAAAAG-AATTTTTAAGAAT-AATCT--ATCTGTGTTTACTTTTATA-AAATTGGTATTCATTTGGAA----AAAC--ACAAAT-ACT-ATATGAAAAATACAATT
gi|141945 : TTTAA-CATAGATTAAAGCATTTTCGCTAATTGGAAATACCCGA-----G--TG-T-GGT--GA----CAGTC------------------AAAATTT------------------GG-TTACTGTGGTCCCATTTATG--CAG-GATATTT-AGGGGAT--A-GGG-AAAAAAG-AATTTTTAAGAAT-AATCT--TTTTGTGTTTGCTTATACACAAATT---------------------------------CT-ATATGAAAAATATAATTT
gi|141946 : TTTAA-CATAGATTAAAGCATTTTCGTTCATTGGAAATACCCGG-----A--TT-T-GGC--AA----TGGTA------------------AAAATTT------------------GG-TTACTGTGGTTCTGTTTATG--TTG-GGTATTA-AGTTGAT------GAAAAA
gi|141947 : TTAA-CATAGATTAAAGCGTTTTTGTTCATTGCAAATACCTGG-----A--TG-T-GGT--GA----CGGTC------------------AAAATTT------------------GG-TTAC
gi|141948 : A-CATAGATTAAAGCATTTTCGTTCATTTGAAATACCCAG-----A--TG-T-GGT--GA----CAGTC------------------AAAATTT------------------GG-TTACTGTTGTCCCATTTATG--CAG-GATATTT-AGGGGAT--A-GGGAAAAAAAT-AATTTTTAAGGAT-AATCT--ATTCGTGTTTACTTTTATA-AAATTGGTATTCATTTGGAA----ATAC--ACAAAT-TCT-AT
gi|141949 : GCGTTTTCG------GGAGAAACCCGGTTTAAA--TG-TCGGC--GC----CG-TC------------------AAGCTTT------------------TGCTTACTGCGATCCCGTCTATTACCA---ACGTTT-AAAG-ATCCG-TGGAAAAAAACTAATT----------AA-CT--ATTAATGTTTACTTTTATA-AAACTGATATTCGTTTGAGA----ATAC--ACAAAT-ACT-AAATGCAAAAAACAAGTT
gi|141950 : TCATTGGAAATACCCGG-----A--TG-T-GGT--GA----CGGTCTTAAAAGTCGGCGCTGTCAAAATTT------------------GG-TTAGTGTGGTCCTGTTTATG--CGG-GGTATGT-AGGGGAT--A-GGGAAAAAATG-AATTTTTAAGAAA-AGCTT--GTTAGTGTTTACTTTTATA-AAATTGGTATTCATTTGGAG----AAAC--ACTAAT-ACT-ATATTATATGTATAATTT
gi|141951 : GGAAACGCCTGA-----AACT--T-GGTTTAA----AAGTC------------------AAGTTTT------------------CA-TATCTGTGATCCCGTTCATG--ATG-GCCGTTTTAAGAGCC--A-TGGAAAAAAGC-AATTT--AAGGATTAACTTTCAATGGTTTTTTCTTTTATA-AAGTTTAAATTCATTTGGAA----ATAC--ATAAAT-ACTAATTTAAAAAATAAAATTT
gi|141952 : GGAAATACCGGG-----A--TGAT-GG---GAAACTCGGTC------------------TAAACTTTGGATCCGTCAAGTTTTCGG-TTACTGCAGTTCCGTTTATT--AGG-GACATTT-------T--A----AAAACCAC-GATT----------AAGCT--ATTAATGTATACTTTTATA-GAATTTATATTTATTTATAA----TTAC--ACAAAC-ACT-A---AAAAACTACAA
gi|141953 : ----CAGTC------------------AAAATTC------------------GG-TTACTATGATTTCGTTTATG--CGG-GACATTT-AGGGGAT--C-GGG--AAATAT-TTTTTTTGTGAAT-AATCG--ATTTGTGTTTA---TTGTA-----TG-TATTCATTTGGAATAGTATATGAATAAAT-ACT-ATATGAAAAATATAGTTT
gi|141954 : TC------------------GG-TTATAGTGGTCCCGTTTAT---TAGAGATGTTT-A-------------------AG-ACTT----------AA-CT--ATTAATGTTTCCTTTTATA-AAATTTATATTTATTTGGAA----ATAC--ACTGAC-ACC-TTATGAAAATTACA
gi|141955 : ------------------GG-TTACTGCAGTCACATTTAT-------------T-AGGG-AT--G----------------TTTTAAGACT-AAACT--ATTGATGTCTACTTCTATG-AATTTTATATTTATTTCGAA----ATAC--AGAGATACCT-A-ATG-AAAATAT
gi|141956 : TTTTAAGAAT-TAACT--ATTAATGTCTTCTTTTATG-AAATTTATATTTATTTGGAA----ATAC--ACAGATACCT-A-GTG-AAAATAT
Alignments
lowQualScore : 222222222222222222 111111111111111111
lowQualScore : 4 0 77777 44 3 3 44 6666 111111111111111111 888888888888888888 2 4 2 99999 4 33 0 3 2 2 3 33 1 1 5555 33 5 2 2
lowQualScore : . . ..... .. . . .. .... .................. .................. . . . ..... . .. . . . . . .. . . .... .. . . .
lowQualScore : 4 5 77777 22 1 1 22 1111 111111111111111111 444444444444444444 5 1 7 11111 3 77 7 3 1 7 9 77 0 7 7777 77 3 7 5
consensus : TTTAA-CATAGATTAAAGCGTTTTCGTTCATTGGAAATACCCGG-----A--TG-T-GGT--GA----CGGTC------------------AAAATTT------------------GG-TTACTGTGGTCCCGTTTATGCGGGATATTT-AGGGGAT--A-GGGAAAAA--AAGAATTTTTAAGAAT-AATCT--ATTNGTGTTTACTTTTATAAAATTGGTATTCATTTGGAA----ATAC--ACAAATA-CT-ATATGAAAAATATAATTT
Reference ( family-903 ) : TTTAA-CATAGATTAAAGCGTTTTCGTTCATTGGAAATACCCGG-----A--TG-T-GGT--GA----CGGTC------------------AAAATTT------------------GG-TTACTGTGGTCCCGTTTATGCGGGATATTT-AGGGGAT--A-GGGAAAAA--AAGAATTTTTAAGAAT-AATCT--ATTNGTGTTTACTTTTATAAAATTGGTATTCATTTGGAA----ATAC--ACAAATA-CT-ATATGAAAAATATAATTT
gi|141940 : TTTAA-CATAGATTAAAGCATCTTCGTTCATTGGAAATACCCGG-----A--TG-T-GGT--GA----CGGTC------------------AAAATTT------------------GG-TTACTGTGGTCCCGTTTATGCAGGATATTT-AGGGGAT--A-GGGAAAAA--AAGAATTTTTAGGGAT-AATCT--ATTTGTGTTTACTTTTATAAAATTGTTATTCATTTGGAA----ATAC--ACAAATT-CT-ATATGAAAAATATAATTT
gi|141941 : TTTAA-CAAAGATTTAAG--TTTTCGTTCATTAGAAATACACAG-----A--TG-T-GGT--GA----CGGTC------------------AAAGTTT------------------GG-TTACTGTAGTCCCATTTATGCAGGATATTT-AGGGGAT--A-GGGAAAAA--AAGAATTTTTAAGAAT-AATCT--ATTTGTGTTTACTTTTATAAAACTGGTATTCATTTGGAA----ACAC--ACAAATA-CT-ATATGAAAAATATAATTT
gi|141942 : TTTAAACATAGATTAAAGCATTTTCGTTCATTGGAAATACATGG-----A--TG-T-GGT--GA----CTGTC------------------AAAATTT------------------GG-TTACAGTGGTCCAGTTTATGCAGGATATTT-AGGGGAC--A-GGGAAAAA--AAGAATTTTTAAGAAT-AACCT--ATTTGTGTTTACTTTT-TTAAATTGGTATTCATTTGGAA----ATAC--AAAAATT-CT-ATATGAAAAATATAATTT
gi|141943 : TTTGA-CATAGATTAAAGTGCTTTTGTTCATTGCAAATACCTGG-----A--TG-T-GGT--GA----CGGTC-------------------AAATTT------------------GG-TTACTGTGGTCCCGTTTATGCAGGATATTT-AGGGGAC--AGGGGGAAAA--AAGAATTTTTAAGAAT-AATCT--ATCTGTGTTTACTTTTATAAAATTGGTATTCATTTGGAA----ATAC--ACAAATA-CT-ATATGAAAAATTTAATTT
gi|141944 : TTTAA-CATAGATTAAAGCGTTTATGTTCATTGGAAATACCCGG-----A--TG-T-GGT--GC----TGGTA------------------AAAATTT------------------GG-TTACTGTGGTCCCGTTTATACAGGATATAT-AGGGGAC--A-GGGGAAAA--AAGAATTTTTAAGAAT-AATCT--ATCTGTGTTTACTTTTATAAAATTGGTATTCATTTGGAA----AAAC--ACAAATA-CT-ATATGAAAAATACAATT
gi|141945 : TTTAA-CATAGATTAAAGCATTTTCGCTAATTGGAAATACCCGA-----G--TG-T-GGT--GA----CAGTC------------------AAAATTT------------------GG-TTACTGTGGTCCCATTTATGCAGGATATTT-AGGGGAT--A-GGG-AAAA--AAGAATTTTTAAGAAT-AATCT--TTTTGTGTTTGCTT-----------------------------ATAC--ACAAATT-CT-ATATGAAAAATATAATTT
gi|141946 : TTTAA-CATAGATTAAAGCATTTTCGTTCATTGGAAATACCCGG-----A--TT-T-GGC--AA----TGGTA------------------AAAATTT------------------GG-TTACTGTGGTTCTGTTTATGTTGGGTATTA-AGTTGAT------GAAAAA--
gi|141947 : TTAA-CATAGATTAAAGCGTTTTTGTTCATTGCAAATACCTGG-----A--TG-T-GGT--GA----CGGTC------------------AAAATTT------------------GG-TTAC
gi|141948 : A-CATAGATTAAAGCATTTTCGTTCATTTGAAATACCCAG-----A--TG-T-GGT--GA----CAGTC------------------AAAATTT------------------GG-TTACTGTTGTCCCATTTATGCAGGATATTT-AGGGGAT--A-GGGAAAAA--AATAATTTTTAAGGAT-AATCT--ATTCGTGTTTACTTTTATAAAATTGGTATTCATTTGGAA----ATAC--ACAAATT-CT-AT
gi|141949 : GCGTTTTCG------GGAGAAACCCGGTTTAAA--TG-TCGGC--GC----CG-TC------------------AAGCTTT------------------TGCTTACTGCGATCCCGTCTATTACCAACGTTT-AAAG-ATCCG-TGGAAAAA--AA------CTAAT--T-AA-CT--ATTAATGTTTACTTTTATAAAACTGATATTCGTTTGAGA----ATAC--ACAAATA-CT-AAATGCAAAAAACAAGTT
gi|141950 : TCATTGGAAATACCCGG-----A--TG-T-GGT--GA----CGGTCTTAAAAGTCGGCGCTGTCAAAATTT------------------GG-TTAGTGTGGTCCTGTTTATGCGGGGTATGT-AGGGGAT--A-GGGAAAAA--ATGAATTTTTAAGAAA-AGCTT--GTTAGTGTTTACTTTTATAAAATTGGTATTCATTTGGAG----AAAC--ACTAATA-CT-ATATTATATGTATAATTT
gi|141951 : GGAAACGCCTGA-----AACT--T-GGTTTAA----AAGTC------------------AAGTTTT------------------CA-TATCTGTGATCCCGTTCATGATGGCCGTTTTAAGAGCC--A-TGGAAAAA--AGCAATTT--AAGGATTAACTTTCAATGGTTTTTTCTTTTATAAAGTTTAAATTCATTTGGAA----ATAC--ATAAATA-CTAATTTAAAAAATAAAATTT
gi|141952 : GGAAATACCGGG-----A--TGAT-GG---GAAACTCGGTC------------------TAAACTTTGGATCCGTCAAGTTTTCGG-TTACTGCAGTTCCGTTTATTAGGGACATTT-------T--A-----AAAACCACGA----TTAAG-------CT--ATTAATGTATACTTTTATAGAATTTATATTTATTTATAA----TTAC--ACAAACA-CT-A---AAAAACTACAA
gi|141953 : ----CAGTC------------------AAAATTC------------------GG-TTACTATGATTTCGTTTATGCGGGACATTT-AGGGGAT--C-GGG--AAA--TATTTTTTTTGTGAAT-AATCG--ATTTGTGTTTA-TTGTAT-------GTATTCATTTGGAATAGTATATGAATAAATA-CT-ATATGAAAAATATAGTTT
gi|141954 : TC------------------GG-TTATAGTGGTCCCGTTTATTAGAGATGTTT-A---------------------AGA---CTTAA--------CT--ATTAATGTTTCCTTTTATAAAATTTATATTTATTTGGAA----ATAC--ACTGACA-CC-TTATGAAAATTACA
gi|141955 : ------------------GG-TTACTGCAGTCACATTTAT----------T-AGGG-AT--G-----------------TTTTAAGACT-AAACT--ATTGATGTCTACTTCTATGAATTTTATATTTATTTCGAA----ATAC--AGAGATACCT-A-ATG-AAAATAT
gi|141956 : TTTTAAGAAT-TAACT--ATTAATGTCTTCTTTTATGAAATTTATATTTATTTGGAA----ATAC--ACAGATACCT-A-GTG-AAAATAT
Alignments
lowQualScore : 222222222222222222 111111111111111111
lowQualScore : 4 0 77777 44 3 3 44 6666 111111111111111111 888888888888888888 2 4 2 99999 4 33 0 3 2 2 3 33 1 1 5555 33 5 2 2
lowQualScore : . . ..... .. . . .. .... .................. .................. . . . ..... . .. . . . . . .. . . .... .. . . .
lowQualScore : 4 5 77777 22 1 1 22 1111 111111111111111111 444444444444444444 5 1 7 11111 3 77 7 3 1 7 9 77 0 7 7777 77 3 7 5
consensus : TTTAA-CATAGATTAAAGCGTTTTCGTTCATTGGAAATACCCGG-----A--TG-T-GGT--GA----CGGTC------------------AAAATTT------------------GG-TTACTGTGGTCCCGTTTATGCGGGATATTT-AGGGGAT--A-GGGAAAAA--AAGAATTTTTAAGAAT-AATCT--ATTNGTGTTTACTTTTATAAAATTGGTATTCATTTGGAA----ATAC--ACAAATA-CT-ATATGAAAAATATAATTT
Reference ( family-903 ) : TTTAA-CATAGATTAAAGCGTTTTCGTTCATTGGAAATACCCGG-----A--TG-T-GGT--GA----CGGTC------------------AAAATTT------------------GG-TTACTGTGGTCCCGTTTATGCGGGATATTT-AGGGGAT--A-GGGAAAAA--AAGAATTTTTAAGAAT-AATCT--ATTNGTGTTTACTTTTATAAAATTGGTATTCATTTGGAA----ATAC--ACAAATA-CT-ATATGAAAAATATAATTT
gi|141940 : TTTAA-CATAGATTAAAGCATCTTCGTTCATTGGAAATACCCGG-----A--TG-T-GGT--GA----CGGTC------------------AAAATTT------------------GG-TTACTGTGGTCCCGTTTATGCAGGATATTT-AGGGGAT--A-GGGAAAAA--AAGAATTTTTAGGGAT-AATCT--ATTTGTGTTTACTTTTATAAAATTGTTATTCATTTGGAA----ATAC--ACAAATT-CT-ATATGAAAAATATAATTT
gi|141941 : TTTAA-CAAAGATTTAAG--TTTTCGTTCATTAGAAATACACAG-----A--TG-T-GGT--GA----CGGTC------------------AAAGTTT------------------GG-TTACTGTAGTCCCATTTATGCAGGATATTT-AGGGGAT--A-GGGAAAAA--AAGAATTTTTAAGAAT-AATCT--ATTTGTGTTTACTTTTATAAAACTGGTATTCATTTGGAA----ACAC--ACAAATA-CT-ATATGAAAAATATAATTT
gi|141942 : TTTAAACATAGATTAAAGCATTTTCGTTCATTGGAAATACATGG-----A--TG-T-GGT--GA----CTGTC------------------AAAATTT------------------GG-TTACAGTGGTCCAGTTTATGCAGGATATTT-AGGGGAC--A-GGGAAAAA--AAGAATTTTTAAGAAT-AACCT--ATTTGTGTTTACTTTT-TTAAATTGGTATTCATTTGGAA----ATAC--AAAAATT-CT-ATATGAAAAATATAATTT
gi|141943 : TTTGA-CATAGATTAAAGTGCTTTTGTTCATTGCAAATACCTGG-----A--TG-T-GGT--GA----CGGTC-------------------AAATTT------------------GG-TTACTGTGGTCCCGTTTATGCAGGATATTT-AGGGGAC--AGGGGGAAAA--AAGAATTTTTAAGAAT-AATCT--ATCTGTGTTTACTTTTATAAAATTGGTATTCATTTGGAA----ATAC--ACAAATA-CT-ATATGAAAAATTTAATTT
gi|141944 : TTTAA-CATAGATTAAAGCGTTTATGTTCATTGGAAATACCCGG-----A--TG-T-GGT--GC----TGGTA------------------AAAATTT------------------GG-TTACTGTGGTCCCGTTTATACAGGATATAT-AGGGGAC--A-GGGGAAAA--AAGAATTTTTAAGAAT-AATCT--ATCTGTGTTTACTTTTATAAAATTGGTATTCATTTGGAA----AAAC--ACAAATA-CT-ATATGAAAAATACAATT
gi|141945 : TTTAA-CATAGATTAAAGCATTTTCGCTAATTGGAAATACCCGA-----G--TG-T-GGT--GA----CAGTC------------------AAAATTT------------------GG-TTACTGTGGTCCCATTTATGCAGGATATTT-AGGGGAT--A-GGG-AAAA--AAGAATTTTTAAGAAT-AATCT--TTTTGTGTTTGCTT-----------------------------ATAC--ACAAATT-CT-ATATGAAAAATATAATTT
gi|141946 : TTTAA-CATAGATTAAAGCATTTTCGTTCATTGGAAATACCCGG-----A--TT-T-GGC--AA----TGGTA------------------AAAATTT------------------GG-TTACTGTGGTTCTGTTTATGTTGGGTATTA-AGTTGAT------GAAAAA--
gi|141947 : TTAA-CATAGATTAAAGCGTTTTTGTTCATTGCAAATACCTGG-----A--TG-T-GGT--GA----CGGTC------------------AAAATTT------------------GG-TTAC
gi|141948 : A-CATAGATTAAAGCATTTTCGTTCATTTGAAATACCCAG-----A--TG-T-GGT--GA----CAGTC------------------AAAATTT------------------GG-TTACTGTTGTCCCATTTATGCAGGATATTT-AGGGGAT--A-GGGAAAAA--AATAATTTTTAAGGAT-AATCT--ATTCGTGTTTACTTTTATAAAATTGGTATTCATTTGGAA----ATAC--ACAAATT-CT-AT
gi|141949 : GCGTTTTCG------GGAGAAACCCGGTTTAAA--TG-TCGGC--GC----CG-TC------------------AAGCTTT------------------TGCTTACTGCGATCCCGTCTATTACCAACGTTT-AAAG-ATCCG-TGGAAAAA--AA------CTAAT--T-AA-CT--ATTAATGTTTACTTTTATAAAACTGATATTCGTTTGAGA----ATAC--ACAAATA-CT-AAATGCAAAAAACAAGTT
gi|141950 : TCATTGGAAATACCCGG-----A--TG-T-GGT--GA----CGGTCTTAAAAGTCGGCGCTGTCAAAATTT------------------GG-TTAGTGTGGTCCTGTTTATGCGGGGTATGT-AGGGGAT--A-GGGAAAAA--ATGAATTTTTAAGAAA-AGCTT--GTTAGTGTTTACTTTTATAAAATTGGTATTCATTTGGAG----AAAC--ACTAATA-CT-ATATTATATGTATAATTT
gi|141951 : GGAAACGCCTGA-----AACT--T-GGTTTAA----AAGTC------------------AAGTTTT------------------CA-TATCTGTGATCCCGTTCATGATGGCCGTTTTAAGAGCC--A-TGGAAAAA--AGCAATTT--AAGGATTAACTTTCAATGGTTTTTTCTTTTATAAAGTTTAAATTCATTTGGAA----ATAC--ATAAATA-CTAATTTAAAAAATAAAATTT
gi|141952 : GGAAATACCGGG-----A--TGAT-GG---GAAACTCGGTC------------------TAAACTTTGGATCCGTCAAGTTTTCGG-TTACTGCAGTTCCGTTTATTAGGGACATTT-------T--A-----AAAACCACGA----TTAAG-------CT--ATTAATGTATACTTTTATAGAATTTATATTTATTTATAA----TTAC--ACAAACA-CT-A---AAAAACTACAA
gi|141953 : ----CAGTC------------------AAAATTC------------------GG-TTACTATGATTTCGTTTATGCGGGACATTT-AGGGGAT--C-GGG--AAA--TATTTTTTTTGTGAAT-AATCG--ATTTGTGTTTA-TTGTAT-------GTATTCATTTGGAATAGTATATGAATAAATA-CT-ATATGAAAAATATAGTTT
gi|141954 : TC------------------GG-TTATAGTGGTCCCGTTTATTAGAGATGTTT-A---------------------AGA---CTTAA--------CT--ATTAATGTTTCCTTTTATAAAATTTATATTTATTTGGAA----ATAC--ACTGACA-CC-TTATGAAAATTACA
gi|141955 : ------------------GG-TTACTGCAGTCACATTTAT----------T-AGGG-AT--G-----------------TTTTAAGACT-AAACT--ATTGATGTCTACTTCTATGAATTTTATATTTATTTCGAA----ATAC--AGAGATACCT-A-ATG-AAAATAT
gi|141956 : TTTTAAGAAT-TAACT--ATTAATGTCTTCTTTTATGAAATTTATATTTATTTGGAA----ATAC--ACAGATACCT-A-GTG-AAAATAT
blockSeqs : A TTTAA AC A C TT AACT TTAAAAGTCGGCGCTGTC TGGATCCGTCAAGTTTTC C A T CCGT A CC A A T T TC T G TAGT GA C A T
blockSeqs : . . . . . . . . . . A . AGG A . A A . C . T G . . C . T
blockSeqs : . . . . . . . . . . A . AG G . A A . T . T G . . . . T
blockSeqs : . . . . . . . . . . A . AG G . A A . T . T G . . . . T
blockSeqs : . . . . . . . . . . A . AG A . A A . T . T G . . . . T
blockSeqs : . . . . . . . . . . T . AG A . A G . T . C G . . . . T
blockSeqs : . . . . . . . . . . A . AG A . A A . C . A G . . . . A
blockSeqs : . . . . . . . . . . C . AG A . A G . C . A T . . . . T
blockSeqs : . . . . . . . . . G . AT A . T A . T . G T . . . . T
blockSeqs : . . . . . . . . . T . CG . . . A . A . A T . . . . T
blockSeqs : . . . . . . . . . G . A . . . A . A . T T . . . . T
blockSeqs : . . . . . . . . . G . G . . . . . . . A T . . . . .
blockSeqs : . . . . G . . . . . . . . . G . . . . . .
blockSeqs : . . . . . . . . . . . A . . . . . .
blockSeqs : . .
blockSeqCons :
originalCons : TTTAA-CATAGATTAAAGCGTTTTCGTTCATTGGAAATACCCGG-----A--TG-T-GGT--GA----CGGTC------------------AAAATTT------------------GG-TTACTGTGGTCCCGTTTATGCGGGATATTT-AGGGGAT--A-GGGAAAAA--AAGAATTTTTAAGAAT-AATCT--ATTNGTGTTTACTTTTATAAAATTGGTATTCATTTGGAA----ATAC--ACAAATA-CT-ATATGAAAAATATAATTT
finalCons : TTTAA-CATAGATTAAAGCGTTTTCGTTCATTGGAAATACCCGG-----A--TG-T-GGT--GA----CGGTC------------------AAAATTT------------------GG-TTACTGTGGTCCCGTTTATGCGGGATATTT-AGGGGAT--A-GGGAAAAA--AAGAATTTTTAAGAAT-AATCT--ATTNGTGTTTACTTTTATAAAATTGGTATTCATTTGGAA----ATAC--ACAAATA-CT-ATATGAAAAATATAATTT
Alignments
lowQualScore : 222222222222222222 111111111111111111
lowQualScore : 4 0 77777 44 3 3 44 6666 111111111111111111 888888888888888888 2 4 2 99999 4 33 0 3 2 2 3 33 1 1 5555 33 5 2 2
lowQualScore : . . ..... .. . . .. .... .................. .................. . . . ..... . .. . . . . . .. . . .... .. . . .
lowQualScore : 4 5 77777 22 1 1 22 1111 111111111111111111 444444444444444444 5 1 7 11111 3 77 7 3 1 7 9 77 0 7 7777 77 3 7 5
consensus : TTTAA-CATAGATTAAAGCGTTTTCGTTCATTGGAAATACCCGG-----A--TG-T-GGT--GA----CGGTC------------------AAAATTT------------------GG-TTACTGTGGTCCCGTTTATGCGGGATATTT-AGGGGAT--A-GGGAAAAA--AAGAATTTTTAAGAAT-AATCT--ATTNGTGTTTACTTTTATAAAATTGGTATTCATTTGGAA----ATAC--ACAAATA-CT-ATATGAAAAATATAATTT
Reference ( family-903 ) : TTTAA-CATAGATTAAAGCGTTTTCGTTCATTGGAAATACCCGG-----A--TG-T-GGT--GA----CGGTC------------------AAAATTT------------------GG-TTACTGTGGTCCCGTTTATGCGGGATATTT-AGGGGAT--A-GGGAAAAA--AAGAATTTTTAAGAAT-AATCT--ATTNGTGTTTACTTTTATAAAATTGGTATTCATTTGGAA----ATAC--ACAAATA-CT-ATATGAAAAATATAATTT
gi|141940 : TTTAA-CATAGATTAAAGCATCTTCGTTCATTGGAAATACCCGG-----A--TG-T-GGT--GA----CGGTC------------------AAAATTT------------------GG-TTACTGTGGTCCCGTTTATGCAGGATATTT-AGGGGAT--A-GGGAAAAA--AAGAATTTTTAGGGAT-AATCT--ATTTGTGTTTACTTTTATAAAATTGTTATTCATTTGGAA----ATAC--ACAAATT-CT-ATATGAAAAATATAATTT
gi|141941 : TTTAA-CAAAGATTTAAG--TTTTCGTTCATTAGAAATACACAG-----A--TG-T-GGT--GA----CGGTC------------------AAAGTTT------------------GG-TTACTGTAGTCCCATTTATGCAGGATATTT-AGGGGAT--A-GGGAAAAA--AAGAATTTTTAAGAAT-AATCT--ATTTGTGTTTACTTTTATAAAACTGGTATTCATTTGGAA----ACAC--ACAAATA-CT-ATATGAAAAATATAATTT
gi|141942 : TTTAAACATAGATTAAAGCATTTTCGTTCATTGGAAATACATGG-----A--TG-T-GGT--GA----CTGTC------------------AAAATTT------------------GG-TTACAGTGGTCCAGTTTATGCAGGATATTT-AGGGGAC--A-GGGAAAAA--AAGAATTTTTAAGAAT-AACCT--ATTTGTGTTTACTTTT-TTAAATTGGTATTCATTTGGAA----ATAC--AAAAATT-CT-ATATGAAAAATATAATTT
gi|141943 : TTTGA-CATAGATTAAAGTGCTTTTGTTCATTGCAAATACCTGG-----A--TG-T-GGT--GA----CGGTC-------------------AAATTT------------------GG-TTACTGTGGTCCCGTTTATGCAGGATATTT-AGGGGAC--AGGGGGAAAA--AAGAATTTTTAAGAAT-AATCT--ATCTGTGTTTACTTTTATAAAATTGGTATTCATTTGGAA----ATAC--ACAAATA-CT-ATATGAAAAATTTAATTT
gi|141944 : TTTAA-CATAGATTAAAGCGTTTATGTTCATTGGAAATACCCGG-----A--TG-T-GGT--GC----TGGTA------------------AAAATTT------------------GG-TTACTGTGGTCCCGTTTATACAGGATATAT-AGGGGAC--A-GGGGAAAA--AAGAATTTTTAAGAAT-AATCT--ATCTGTGTTTACTTTTATAAAATTGGTATTCATTTGGAA----AAAC--ACAAATA-CT-ATATGAAAAATACAATT
gi|141945 : TTTAA-CATAGATTAAAGCATTTTCGCTAATTGGAAATACCCGA-----G--TG-T-GGT--GA----CAGTC------------------AAAATTT------------------GG-TTACTGTGGTCCCATTTATGCAGGATATTT-AGGGGAT--A-GGG-AAAA--AAGAATTTTTAAGAAT-AATCT--TTTTGTGTTTGCTT-----------------------------ATAC--ACAAATT-CT-ATATGAAAAATATAATTT
gi|141946 : TTTAA-CATAGATTAAAGCATTTTCGTTCATTGGAAATACCCGG-----A--TT-T-GGC--AA----TGGTA------------------AAAATTT------------------GG-TTACTGTGGTTCTGTTTATGTTGGGTATTA-AGTTGAT------GAAAAA--
gi|141947 : TTAA-CATAGATTAAAGCGTTTTTGTTCATTGCAAATACCTGG-----A--TG-T-GGT--GA----CGGTC------------------AAAATTT------------------GG-TTAC
gi|141948 : A-CATAGATTAAAGCATTTTCGTTCATTTGAAATACCCAG-----A--TG-T-GGT--GA----CAGTC------------------AAAATTT------------------GG-TTACTGTTGTCCCATTTATGCAGGATATTT-AGGGGAT--A-GGGAAAAA--AATAATTTTTAAGGAT-AATCT--ATTCGTGTTTACTTTTATAAAATTGGTATTCATTTGGAA----ATAC--ACAAATT-CT-AT
gi|141949 : GCGTTTTCG------GGAGAAACCCGGTTTAAA--TG-TCGGC--GC----CG-TC------------------AAGCTTT------------------TGCTTACTGCGATCCCGTCTATTACCAACGTTT-AAAG-ATCCG-TGGAAAAA--AA------CTAAT--T-AA-CT--ATTAATGTTTACTTTTATAAAACTGATATTCGTTTGAGA----ATAC--ACAAATA-CT-AAATGCAAAAAACAAGTT
gi|141950 : TCATTGGAAATACCCGG-----A--TG-T-GGT--GA----CGGTCTTAAAAGTCGGCGCTGTCAAAATTT------------------GG-TTAGTGTGGTCCTGTTTATGCGGGGTATGT-AGGGGAT--A-GGGAAAAA--ATGAATTTTTAAGAAA-AGCTT--GTTAGTGTTTACTTTTATAAAATTGGTATTCATTTGGAG----AAAC--ACTAATA-CT-ATATTATATGTATAATTT
gi|141951 : GGAAACGCCTGA-----AACT--T-GGTTTAA----AAGTC------------------AAGTTTT------------------CA-TATCTGTGATCCCGTTCATGATGGCCGTTTTAAGAGCC--A-TGGAAAAA--AGCAATTT--AAGGATTAACTTTCAATGGTTTTTTCTTTTATAAAGTTTAAATTCATTTGGAA----ATAC--ATAAATA-CTAATTTAAAAAATAAAATTT
gi|141952 : GGAAATACCGGG-----A--TGAT-GG---GAAACTCGGTC------------------TAAACTTTGGATCCGTCAAGTTTTCGG-TTACTGCAGTTCCGTTTATTAGGGACATTT-------T--A-----AAAACCACGA----TTAAG-------CT--ATTAATGTATACTTTTATAGAATTTATATTTATTTATAA----TTAC--ACAAACA-CT-A---AAAAACTACAA
gi|141953 : ----CAGTC------------------AAAATTC------------------GG-TTACTATGATTTCGTTTATGCGGGACATTT-AGGGGAT--C-GGG--AAA--TATTTTTTTTGTGAAT-AATCG--ATTTGTGTTTA-TTGTAT-------GTATTCATTTGGAATAGTATATGAATAAATA-CT-ATATGAAAAATATAGTTT
gi|141954 : TC------------------GG-TTATAGTGGTCCCGTTTATTAGAGATGTTT-A---------------------AGA---CTTAA--------CT--ATTAATGTTTCCTTTTATAAAATTTATATTTATTTGGAA----ATAC--ACTGACA-CC-TTATGAAAATTACA
gi|141955 : ------------------GG-TTACTGCAGTCACATTTAT----------T-AGGG-AT--G-----------------TTTTAAGACT-AAACT--ATTGATGTCTACTTCTATGAATTTTATATTTATTTCGAA----ATAC--AGAGATACCT-A-ATG-AAAATAT
gi|141956 : TTTTAAGAAT-TAACT--ATTAATGTCTTCTTTTATGAAATTTATATTTATTTGGAA----ATAC--ACAGATACCT-A-GTG-AAAATAT