lowQualScore                  :                                           111                                          
lowQualScore                  :                 777777       5555         777         44       4          33           
lowQualScore                  :                 ......       ....         ...         ..       .          ..           
lowQualScore                  :                 222222       3333         333         33       5          77           
consensus                     : TAGCGGTTGTAACTAC------CATTTAC----AGCAATGCA--GGCAACACATATCCGCCTCATTGAAAGCAC--AATATTTGCAA
Reference ( gi|38374 )        : TAGCGGTTGTAACTAC------CATTTAC----AGCAATGCA--TGCAACACATACCCGCCTCGTTGAAAGCAC--AATATTTGCAA
gi|38378                      : TAGCGGTTGTAACTAC------CATTTAC----AGCAATGCA--GGCAACATATACCCGCCTCGTTTAAAGCAC--AATATTT
gi|38376                      : TAACGGTTGTAACTAC------CATTTTC----AGCAATGCA--GGCAACACACACCTGTCTCGTTGAAAGCAC--AATATTTGCAA
gi|38377                      : TAGCGGTTGTAACTAC------CATTTAC----AGAAATGCA--GGCAACACATATCTGCCTCATTGAAGGCAC--AATATTTGCA
gi|38375                      : TAGCGGTTGTAAATAC------CATTAAC----AGCAATGCA--GGCAACCCATACCCGTCTCATTGAAAGCAC--AATATTTGCA
gi|38379                      : TAACGGTTGTAACTAT------CATTTAC----AGCAATGCAGTTG--ACACATACCCGCCTTATTGAAAGCAT--AATATTTGTAA
gi|38380                      : TAGCGGTTGTGACTAC------CATTTAC----AGCAAAGCA--GTTAACACATATCCGCCTTACTGAAAGCAC--AATATTTGTAA
gi|38382                      : TAGCGGTTGTAACTTC------CATTTAA----AATAATGCA--GGCAACACATAACGGCCTCAATGGAAGCAC--AATATTTGCAA
gi|38381                      : TAGCAGTTGTAACTAC------CATTTAC----AGCAATGTA--GGCAACACAT--CCATCTCAATGAAAGCAC--ACTATTTGTAA
gi|38383                      : TAGCGGTTGTAACTAC------CATTTAC----AGCAATTAA--GGCAATATATATCAGCCTCATTGAAAATAC--ACTATTTGCAA
gi|38384                      : TAACAGTTGTAACCAC------CATTTTC----AGCAATGCT--GGTAACACATATCCGCCTTATTGAAATCAA--AAT
gi|38385                      : TAGCGGTTGTAACTACATGTACCTTTTGC----AGCAATGCA--AAGAACACAGCTCCACTTCATCAAATGCCC--AATATTTGCAA
gi|38386                      : TAGCGGGTGTAACTAC------CATTTGC----AGCA------------CACTT--CCGCCTCATTGAAAGTAC--ATTATTAGCAA
gi|38387                      : TAGCGTTTGTAACTAC------ATTTTAC----AGTAATACA--GAAAACACATATCAGCATCAGTGCAAGTGA--AACATTAGCAA
gi|38388                      : TAGCGGGTGTAACTAC------CATTTACCTCAGGCAATACA--AGCAAAACAT
gi|38389                      :   GCGATTGTAATTAT------CATTTAC----AGCAATGAA--GACAACACATATCCGCTTCTTTTAAAGCACAAAATATTTACActcactggcaacaat
gi|38390                      :                 ------CATCGGC----AACAATGCA--AGCAACTCATCTCCGCCTCATTGAAAGC-----ATATTT





Alignments
lowQualScore                  :                 666666       5555                                     2  33           
lowQualScore                  :                 ......       ....                                     .  ..           
lowQualScore                  :                 888888       0000                                     4  22           
consensus                     : TAGCGGTTGTAACTAC------CATTTAC----AGCAATGCAGGCAACACATATCCGCCTCATTGAAAGC-AC--AATATTTGCAA
Reference ( family-901 )      : TAGCGGTTGTAACTAC------CATTTAC----AGCAATGCAGGCAACACATATCCGCCTCATTGAAAGC-AC--AATATTTGCAA
gi|38374                      : TAGCGGTTGTAACTAC------CATTTAC----AGCAATGCATGCAACACATACCCGCCTCGTTGAAAGC-AC--AATATTTGCAA
gi|38375                      : TAGCGGTTGTAAATAC------CATTAAC----AGCAATGCAGGCAACCCATACCCGTCTCATTGAAAGC-AC--AATATTTGCA
gi|38376                      : TAACGGTTGTAACTAC------CATTTTC----AGCAATGCAGGCAACACACACCTGTCTCGTTGAAAGC-AC--AATATTTGCAA
gi|38377                      : TAGCGGTTGTAACTAC------CATTTAC----AGAAATGCAGGCAACACATATCTGCCTCATTGAAGGC-AC--AATATTTGCA
gi|38378                      : TAGCGGTTGTAACTAC------CATTTAC----AGCAATGCAGGCAACATATACCCGCCTCGTTTAAAGC-AC--AATATTT
gi|38379                      : TAACGGTTGTAACTAT------CATTTAC----AGCAATGCAGTTGACACATACCCGCCTTATTGAAAGC-AT--AATATTTGTAA
gi|38380                      : TAGCGGTTGTGACTAC------CATTTAC----AGCAAAGCAGTTAACACATATCCGCCTTACTGAAAGC-AC--AATATTTGTAA
gi|38381                      : TAGCAGTTGTAACTAC------CATTTAC----AGCAATGTAGGCAACAC--ATCCATCTCAATGAAAGC-AC--ACTATTTGTAA
gi|38382                      : TAGCGGTTGTAACTTC------CATTTAA----AATAATGCAGGCAACACATAACGGCCTCAATGGAAGC-AC--AATATTTGCAA
gi|38383                      : TAGCGGTTGTAACTAC------CATTTAC----AGCAATTAAGGCAATATATATCAGCCTCATTGAAAAT-AC--ACTATTTGCAA
gi|38384                      : TAACAGTTGTAACCAC------CATTTTC----AGCAATGCTGGTAACACATATCCGCCTTATTGAAATC-AA--AAT
gi|38385                      : TAGCGGTTGTAACTACATGTACCTTTTGC----AGCAATGCAAAGAACACAGCTCCACTTCATCAAATGC-CC--AATATTTGCAA
gi|38386                      : TAGCGGGTGTAACTAC------CATTTGC----AGCA----------CAC-T-TCCGCCTCATTGAAAGT-AC--ATTATTAGCAA
gi|38387                      : TAGCGTTTGTAACTAC------ATTTTAC----AGTAATACAGAAAACACATATCAGCATCAGTGCAAGT-GA--AACATTAGCAA
gi|38388                      : TAGCGGGTGTAACTAC------CATTTACCTCAGGCAATACAAGCAAAACAT------CTCACTG---GCAAC--AAT
gi|38389                      :   GCGATTGTAATTAT------CATTTAC----AGCAATGAAGACAACACATATCCGCTTCTTTTAAAGC-ACAAAATATTTACA
gi|38390                      :                 ------CATCGGC----AACAATGCAAGCAACTCATCTCCGCCTCATTGAAAGC------ATATTT





Alignments
lowQualScore                  :                 666666       5555                                     2  33           
lowQualScore                  :                 ......       ....                                     .  ..           
lowQualScore                  :                 888888       0000                                     4  22           
consensus                     : TAGCGGTTGTAACTAC------CATTTAC----AGCAATGCAGGCAACACATATCCGCCTCATTGAAAGC-AC--AATATTTGCAA
Reference ( family-901 )      : TAGCGGTTGTAACTAC------CATTTAC----AGCAATGCAGGCAACACATATCCGCCTCATTGAAAGC-AC--AATATTTGCAA
gi|38374                      : TAGCGGTTGTAACTAC------CATTTAC----AGCAATGCATGCAACACATACCCGCCTCGTTGAAAGC-AC--AATATTTGCAA
gi|38375                      : TAGCGGTTGTAAATAC------CATTAAC----AGCAATGCAGGCAACCCATACCCGTCTCATTGAAAGC-AC--AATATTTGCA
gi|38376                      : TAACGGTTGTAACTAC------CATTTTC----AGCAATGCAGGCAACACACACCTGTCTCGTTGAAAGC-AC--AATATTTGCAA
gi|38377                      : TAGCGGTTGTAACTAC------CATTTAC----AGAAATGCAGGCAACACATATCTGCCTCATTGAAGGC-AC--AATATTTGCA
gi|38378                      : TAGCGGTTGTAACTAC------CATTTAC----AGCAATGCAGGCAACATATACCCGCCTCGTTTAAAGC-AC--AATATTT
gi|38379                      : TAACGGTTGTAACTAT------CATTTAC----AGCAATGCAGTTGACACATACCCGCCTTATTGAAAGC-AT--AATATTTGTAA
gi|38380                      : TAGCGGTTGTGACTAC------CATTTAC----AGCAAAGCAGTTAACACATATCCGCCTTACTGAAAGC-AC--AATATTTGTAA
gi|38381                      : TAGCAGTTGTAACTAC------CATTTAC----AGCAATGTAGGCAACAC--ATCCATCTCAATGAAAGC-AC--ACTATTTGTAA
gi|38382                      : TAGCGGTTGTAACTTC------CATTTAA----AATAATGCAGGCAACACATAACGGCCTCAATGGAAGC-AC--AATATTTGCAA
gi|38383                      : TAGCGGTTGTAACTAC------CATTTAC----AGCAATTAAGGCAATATATATCAGCCTCATTGAAAAT-AC--ACTATTTGCAA
gi|38384                      : TAACAGTTGTAACCAC------CATTTTC----AGCAATGCTGGTAACACATATCCGCCTTATTGAAATC-AA--AAT
gi|38385                      : TAGCGGTTGTAACTACATGTACCTTTTGC----AGCAATGCAAAGAACACAGCTCCACTTCATCAAATGC-CC--AATATTTGCAA
gi|38386                      : TAGCGGGTGTAACTAC------CATTTGC----AGCA----------CAC-T-TCCGCCTCATTGAAAGT-AC--ATTATTAGCAA
gi|38387                      : TAGCGTTTGTAACTAC------ATTTTAC----AGTAATACAGAAAACACATATCAGCATCAGTGCAAGT-GA--AACATTAGCAA
gi|38388                      : TAGCGGGTGTAACTAC------CATTTACCTCAGGCAATACAAGCAAAACAT------CTCACTG---GCAAC--AAT
gi|38389                      :   GCGATTGTAATTAT------CATTTAC----AGCAATGAAGACAACACATATCCGCTTCTTTTAAAGC-ACAAAATATTTACA
gi|38390                      :                 ------CATCGGC----AACAATGCAAGCAACTCATCTCCGCCTCATTGAAAGC------ATATTT


blockSeqs                     :                 ATGTAC       CTCA                                     A  AA
blockSeqs                     :                 .            .                                        .  . 
blockSeqs                     :                 .            .                                        .  . 
blockSeqs                     :                 .            .                                        .  . 
blockSeqs                     :                 .            .                                        .  . 
blockSeqs                     :                 .            .                                        .  . 
blockSeqs                     :                 .            .                                        .  . 
blockSeqs                     :                 .            .                                        .  . 
blockSeqs                     :                 .            .                                        .  . 
blockSeqs                     :                 .            .                                        .  . 
blockSeqs                     :                 .            .                                        .  . 
blockSeqs                     :                 .            .                                        .  . 
blockSeqs                     :                 .            .                                        .  . 
blockSeqs                     :                 .            .                                        .  . 
blockSeqs                     :                 .            .                                        .  . 
blockSeqs                     :                 .            .                                        .  . 


blockSeqCons                  : 
originalCons                  : TAGCGGTTGTAACTAC------CATTTAC----AGCAATGCAGGCAACACATATCCGCCTCATTGAAAGC-AC--AATATTTGCAA
finalCons                     : TAGCGGTTGTAACTAC------CATTTAC----AGCAATGCAGGCAACACATATCCGCCTCATTGAAAGC-AC--AATATTTGCAA





Alignments
lowQualScore                  :                 666666       5555                                     2  33           
lowQualScore                  :                 ......       ....                                     .  ..           
lowQualScore                  :                 888888       0000                                     4  22           
consensus                     : TAGCGGTTGTAACTAC------CATTTAC----AGCAATGCAGGCAACACATATCCGCCTCATTGAAAGC-AC--AATATTTGCAA
Reference ( family-901 )      : TAGCGGTTGTAACTAC------CATTTAC----AGCAATGCAGGCAACACATATCCGCCTCATTGAAAGC-AC--AATATTTGCAA
gi|38374                      : TAGCGGTTGTAACTAC------CATTTAC----AGCAATGCATGCAACACATACCCGCCTCGTTGAAAGC-AC--AATATTTGCAA
gi|38375                      : TAGCGGTTGTAAATAC------CATTAAC----AGCAATGCAGGCAACCCATACCCGTCTCATTGAAAGC-AC--AATATTTGCA
gi|38376                      : TAACGGTTGTAACTAC------CATTTTC----AGCAATGCAGGCAACACACACCTGTCTCGTTGAAAGC-AC--AATATTTGCAA
gi|38377                      : TAGCGGTTGTAACTAC------CATTTAC----AGAAATGCAGGCAACACATATCTGCCTCATTGAAGGC-AC--AATATTTGCA
gi|38378                      : TAGCGGTTGTAACTAC------CATTTAC----AGCAATGCAGGCAACATATACCCGCCTCGTTTAAAGC-AC--AATATTT
gi|38379                      : TAACGGTTGTAACTAT------CATTTAC----AGCAATGCAGTTGACACATACCCGCCTTATTGAAAGC-AT--AATATTTGTAA
gi|38380                      : TAGCGGTTGTGACTAC------CATTTAC----AGCAAAGCAGTTAACACATATCCGCCTTACTGAAAGC-AC--AATATTTGTAA
gi|38381                      : TAGCAGTTGTAACTAC------CATTTAC----AGCAATGTAGGCAACAC--ATCCATCTCAATGAAAGC-AC--ACTATTTGTAA
gi|38382                      : TAGCGGTTGTAACTTC------CATTTAA----AATAATGCAGGCAACACATAACGGCCTCAATGGAAGC-AC--AATATTTGCAA
gi|38383                      : TAGCGGTTGTAACTAC------CATTTAC----AGCAATTAAGGCAATATATATCAGCCTCATTGAAAAT-AC--ACTATTTGCAA
gi|38384                      : TAACAGTTGTAACCAC------CATTTTC----AGCAATGCTGGTAACACATATCCGCCTTATTGAAATC-AA--AAT
gi|38385                      : TAGCGGTTGTAACTACATGTACCTTTTGC----AGCAATGCAAAGAACACAGCTCCACTTCATCAAATGC-CC--AATATTTGCAA
gi|38386                      : TAGCGGGTGTAACTAC------CATTTGC----AGCA----------CAC-T-TCCGCCTCATTGAAAGT-AC--ATTATTAGCAA
gi|38387                      : TAGCGTTTGTAACTAC------ATTTTAC----AGTAATACAGAAAACACATATCAGCATCAGTGCAAGT-GA--AACATTAGCAA
gi|38388                      : TAGCGGGTGTAACTAC------CATTTACCTCAGGCAATACAAGCAAAACAT------CTCACTG---GCAAC--AAT
gi|38389                      :   GCGATTGTAATTAT------CATTTAC----AGCAATGAAGACAACACATATCCGCTTCTTTTAAAGC-ACAAAATATTTACA
gi|38390                      :                 ------CATCGGC----AACAATGCAAGCAACTCATCTCCGCCTCATTGAAAGC------ATATTT