lowQualScore                  :                                                      22222                                                                                           222222222222                                                                                                  99999999999999999999                               1    1                3333333333333333333333333333         1111111111111                 1111111                   111111111                            22222                        
lowQualScore                  :  6                                           55      55555   3       7        4      55      0             3          4         3     0              111111111111                                 88888                                555     2                   33333333333333333333                        3    3 2    7                0000000000000000000000000000  555    4444444444444       3  555    0000000      3  6666      222222222              555   3 3     33333       3          0     
lowQualScore                  :  .                                           ..      .....   .       .        .      ..      .             .          .         .     .              ............                                 .....                                ...     .                   ....................                        .    . .    .                ............................  ...    .............       .  ...    .......      .  ....      .........              ...   . .     .....       .          .     
lowQualScore                  :  0                                           00      44444   6       7        1      00      5             3          5         6     5              888888888888                                 33333                                888     2                   99999999999999999999                        3    3 7    1                1111111111111111111111111111  444    7777777777777       1  444    0000000      1  5555      333333333              444   1 1     11111       1          2     
consensus                     : GGATATGACATAATAGGGGGTGTAACAGATCACAGAGAAATAATG--AAAAAAGN--TATA-AAATAAAGGCAATTAACGTTTTA--TTTACTCAATATACATGTTCGAACTCATCTTATTACAAGTA-TGTCTCAAAACAATGTCTAC-----------ATTTAAATAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGACAGAAGCGGAGTAGACCCAAC---TGTTTCGGAAGCTGATTGTTAGTGTCTGTTAA-ATTAACATTGACATGTAGTCATATAGTGGGAGTAAT-ACAT-TTTCCAGATTGTCAAGTGCAGTC------------C---------------TG---CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCATGTTTTC
Reference ( gi|109236 )       : GAATATGACATAATAGGGGGTGTAACAGATCACAGAGAAATAATG--AAAAAAGT--TATA-AAATAAAAGCAATTAATGTTTTA--TTTACTTAATATACATGTTCAAACTCATCTTGTTACAAGTA-TGTCTTAAAACAATGTCTAC-----------GTTTAAATAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGACAGAAGCAGAGTAGACCCAAC---TGTTTTGGAAGCTGATTGTTAGTGTCTGTTAATATTAACATTGACATGTAGTCATATAGTGGGAGTAAT-ACAT-TATCCATATTGTCAAGTGCAGTC------------C---------------TG---CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109235                     : GGATATGACATAATAGGGGGCGTAACAGATCACAGAGAAATAATG--AAAAAAGA--TATA-AAATAAAGGCAATTAATGTTTTA--TTTACTTAATATACATGTTCAAACTCATCTTGTTACAAGTA-TATCTTAAAACAATGTCTAC-----------ATTTAAACAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGACAAAAGCAGTGTAGACCCAAC---TGTTTTGGAAGCTGATTGTTAGTGT--------------------ATGTAGTCATATAGTGGAAGTAAT-ACAT-TATCCAGATGGTCAAGTGCAGTC------------C---------------TG---CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109242                     : GGATATGACATAATAGGGTGTGTAACAGATCAGAGAGAAATAATG--AAGAAAGA--TATA-AAATAAAGGCAATTAACGTTTTA--TTTACTTAATATACATGTTCGAACACATTTTAATACAAGCA-TGTCTTAAAACAATGTCTAC-----------ATTTAAATAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGACAGAAGCAGAGTAGACACAAC---TGCTTTGGAAGCTG-TTGTTAGTGTCTGTTTATATTAACATTGACATGTAGTCATATAGTGGGAGTAAT-TCAT-TTTCCAGATTGTCAAGTGCAGTC------------C---------------TG---TAAA----T--------ATATACT-TA---ACGG-------ATGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGATC-TTTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109237                     : GGATATGACATAATAGGGGGTGTAACAGGTCACAGAGAAATAATG--AAAAACAT--AA-A-AAATAAAGGCAATTTACGTTTTA--TTTACTCAATATACATGTTCGAACTCATCTTATTACAAGTA-TGTCTCAAAACAATGTCTAC-----------ATTTAAATAAAGTTTATAATTTACTTTACATATC-----AGTTGTACAGACAGACGCAGAGTAGACCCAAC---TGTTTCGGAAGCTGATTGTTAGTGT--------------------ATGTAGTCATATAGTGGGAGTAAT-ACAT-TTTCCAGATTGTCAAGTGCAGTT------------C---------------TG---CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-TA----ATTTAC---------GGGGACTATATTTC---TGA-C-TGTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109238                     : GGATATGACATAATAGGGGGTGCGACAGATCACAGAGAAATAATG--AAAAAACA--TATA-AAATAAAGGCAATTAACGTTTTA--TTTACTCATTATACATGTTCGAACTC---TTATTACAAGTA-TGTCTCAAAACAATGTCTAC-----------ATTTAAATAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGAGAGAAGCAGAGTAGACCCAAC---TGTTTCGGAAGCTGATTGTTAGTGT--------------------ATGTAATCATATAGTGGGAGTAAT-ACAT-TTTCCAGATTGTCAAGTGCAGTC------------C---------------TG---CAAA----T--------ATATACT-TT---ACAA-------GTGTAC-CA----ATTTAT----------GGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCAT-TTTTC
gi|109240                     : GGATACAACATAATAGGCGGTGTAACAGATCACAGAGAAATAATG--AAAAAA----CATA-AAATAAAGGCAATTAACGTTTTA--TTTACTCATTATACATGTTCGAACTCATCTTATTACAAGTA-TGTCTCAAAACAATGTCTAC-----------ATTTAAATAAAGCTTATAATTTACTTTGCATATC-----AGTTGTACAGATAGAAGTAGAGCAGACCCAAC---TGTTTCGGAAGCTGATTGTTAGTGT--------------------ATGTAGTCATATAGTGGGAGTAAT-ACAT-TTTCCAGATTGTCAAGTGCAGTC------------C---------------TG---CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-CA----GTTTAT----------GGGACTATATTTC---TGA-C-ATTTT-----TGTGTCT-CTGTCATTATGTTTT
gi|109239                     : GGATATGACGTAATAGGGGATGTAACAGATCACAGAGAAATAATGGAAAAAAAACCATATA-AAATAAAGGCAATTAACGTTTTA--TTTACTCATTATACATGTTCGAACTCATCTTATTACAAGTA-TGTCTCAAAACAATGTCTAC-----------ATTTAAATAAAGCTGATAATTTACTTTACATATC-----AGTTGTACAGACAGAAGCAGAGTAGACCCAAC---TGTTTCGGAAGCTAATTGTTAGTGTATGT--------------------AGTAATATAGTGGAAGTAAT-ACAT-TTTCCAGATTGTCAAGTGCAGTC------------C---------------TG---CAAA----T--------ATATACT-TA---ACAG-------TTGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-CATTTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109241                     : GGATATGACATAATAGGGGGTGTAACAGATCACAGAGAAATAATG--AAAAACAT---ATA-AAATAAAGGCAATTAACATTTTA--TTTACTCAATATACATGTTCGAACTCATCTTATTACAA-TAGTGTCTCAAAACAATGTATAC-----------ATTTAAATAAAGCTTATAATTTACATTACATATA-----AGTTGTACAGACAGAAGCAGAGTAGACCCAAC---TGTTTCGGAAGCTGATTGTTGGTGT--------------------ATGTAGTCATATAGTGGGAGTAAT-ACAT-TTTCCAGATTGT--------------------------------------------CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109243                     : GGATATGACATAATAGGGGGTGTTG-AGATCACAGAGAAATAATG--AAAAAAG----ATG-AAATAAAGGCAATTAACGTTTTACATTTACTTTATATACATGTTCGAACTCATCTTATTACAAGTA-TGTCTTAAA-CAATGTCTAC-----------ATTTAAATAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGACAGAAGCTGAGTAGACCCAAC---TGTTTCGGAAGCTGTTTGTTAGTGTCTGTTAATATTAACATTGACATGTAGTCATATAGTGGGAGTAAT-ACAT-TTTCAAGATTGTCAACTG
gi|109244                     :     ATGACGTAAGATGGGA-GTTACAGATTGCAGGGAAGTAATG--AAAAAA----TATA----TAAAA----TTAATGTTTTA--TTGATCTAATATGCATGTTCGAAATCATTTTATTACACGCA-TGACCCAAAACAATGTCTACTTTTAGATAAAGCTTAAATAAAGCTTATGTTTTACTTAACATATC-----TGTTGT----ACAGAAGTGAAGCAAATCCA-------TTTTGGAAACAAATTGTTAGTATCAGTAAACAT
gi|109245                     :                      GTAACAGATCACAGAGAAATAGTG--AAAA--GC--CATATAAATAAG-GCAATTAACGTTTTA--TTTACGCAATATACGTGTTTGAAATCATCTTATTACAAGTA-TATCTCAAACCAATGTTCAC-----------ATTTAAATAAATCTGATATTGTACTTGACATATC-----TGTTGCACAGACAGAAGTGAAGCAGACCCAACTGTTGTTTCGGAGGCAGTTTGTTAGTGTATGTTAATATTAATATTGACATGTAACCATATAGTGGAAGTCAT-ATAT-TTTCCAGAATGTCAAGTGCAGTCCGGAAAAGGGCAC---------------TG---CAAG----A--------ATAAACC-TT---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACGATATTTC---TTA-C-ATTCTGATGACGTGTCT-CTGTCATCATATTTT
gi|109246                     :                             ATCGCAGACAA-TAATG--ATATGCCT--TATA-AAATAAAGACA------GTTTCA--TTTATTCAATATGCATGTTAAAA-TCATTTTATTACATGTA-TTTCTTAAAACAATATTT-T-----------ATTTTAGTAAAGCTTATAGTTTGCTTTACATATT-----TGTTGGATAGACTGAAGTGACGCAGACCCAAT---TG-TTCGGAAG-TGA
gi|109247                     :                                                                                                                                                                                           TACATATCTAGATAGTTGTATAGGCGGATGTGAAGCAGACCAAAT---TATTTCGGAAGCAGATTGTTAGTGTCTGTTACAATTAACATTGAAATTAAGCCATTTATTGGGAGAAAT-ACCTGCACCTG-ATTGTCAAGTGCAGT-------------C---------------TGGAATAAA----A--------ATATATTGTTAAAACAGACATGACATATAC-AA----ATTTAA---------TGGGACCATATTCC---TGA-C-TTTTTGATGACGTATCTACTTCTCTCATATTTT
gi|109248                     :                                                                                                                                                                                                                                                 GGAAACAGATTGTTAGTATTCGTTAATATTAACATTGACATGAAGCCTTAAATTGGGAGTAAT-ACAT-GTTCCAGATTGTCAAGTGCAGTC------------C---------------GG---AAAAAGGCTCTGGAGGAATATACT-TC---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACCATATTTCTTATGA-C------------GTGTCT-CTGTCATCATGTTTTC
gi|109249                     :                                                                                                                                                                                                                                                                                       CATGCAGCCATATACTTGGAGTATTTACAT-GTTCCAGAGTGTCACGTGCAGTC------------CGGGAAAAAAAGGCTCTG---CAAG----A--------AGACACT-TC---ACAG-------GTGCACACATGCCATATACAAATAGAAGGGAGACCATATTTC---TGA-C-TTTTTGATTACGCGTCT-CTTTCACCATGTTTCC
gi|109250                     :                                                                                                                                                                                                                                                                                                                                                        tg---------------TG---CAAA----T--------ATATACT-TT---ACAG-------GTGAAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-TTGTCATCATTTTTTC
gi|109251                     :                                                                                                                                                                                                                                                                                                                                                          ---------------TG---CAAA----T--------ATGTACT-TT---ACTG-------GTGTAC-CA----ATTGAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCATTTTTTC





Alignments
lowQualScore                  :                                                    222222                                                                                                                                                                                                          9999999999999999999999                                                    333333333333333          1111111111111                                           111111111                            22222                        
lowQualScore                  :                                                    222222    3                       44                                         3                    999999  88888                                77777                  1             555                         1111111111111111111111                        3                           777777777777777   555    3333333333333       2  555    9999999      2  6666      111111111              555   2 2     11111       2                
lowQualScore                  :                                                    ......    .                       ..                                         .                    ......  .....                                .....                  .             ...                         ......................                        .                           ...............   ...    .............       .  ...    .......      .  ....      .........              ...   . .     .....       .                
lowQualScore                  :                                                    666666    3                       66                                         3                    666666  33333                                77777                  8             444                         4444444444444444444444                        1                           999999999999999   000    0000000000000       9  000    3333333      9  1111      444444444              000   9 9     44444       9                
consensus                     : GGATATGACATAATAGGGGGTGTAACAGATCACAGAGAAATAATGAAAAAAGA----TATA-AAATAAAGGCAATTAACGTTTTA--TTTACTCAATATACATGTTCGAACTCATCTTATTACAAGTA-TGTCTCAAAACAATGTCTAC------AT-----TTAAATAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGACAGAAGCGGAGTAGACCCAAC---TGTTTCGGAAGCTGATTGTTAGTGTCTG-TTA-A-ATTAACATTGACATGTAGTCATATAGTGGGAGTAAT-ACATTTTCCAGATTGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCATGTTTTC
Reference ( family-900 )      : GGATATGACATAATAGGGGGTGTAACAGATCACAGAGAAATAATGAAAAAAGN----TATA-AAATAAAGGCAATTAACGTTTTA--TTTACTCAATATACATGTTCGAACTCATCTTATTACAAGTA-TGTCTCAAAACAATGTCTAC------AT-----TTAAATAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGACAGAAGCGGAGTAGACCCAAC---TGTTTCGGAAGCTGATTGTTAGTGTCTG-TTA-A-ATTAACATTGACATGTAGTCATATAGTGGGAGTAAT-ACATTTTCCAGATTGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109235                     : GGATATGACATAATAGGGGGCGTAACAGATCACAGAGAAATAATGAAAAAAGA----TATA-AAATAAAGGCAATTAATGTTTTA--TTTACTTAATATACATGTTCAAACTCATCTTGTTACAAGTA-TATCTTAAAACAATGTCTAC------AT-----TTAAACAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGACAAAAGCAGTGTAGACCCAAC---TGTTTTGGAAGCTGATTGTTAGTGT----------------------ATGTAGTCATATAGTGGAAGTAAT-ACATTATCCAGATGGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109236                     : GAATATGACATAATAGGGGGTGTAACAGATCACAGAGAAATAATGAAAAAAGT----TATA-AAATAAAAGCAATTAATGTTTTA--TTTACTTAATATACATGTTCAAACTCATCTTGTTACAAGTA-TGTCTTAAAACAATGTCTAC------GT-----TTAAATAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGACAGAAGCAGAGTAGACCCAAC---TGTTTTGGAAGCTGATTGTTAGTGTCTG-TTA-ATATTAACATTGACATGTAGTCATATAGTGGGAGTAAT-ACATTATCCATATTGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109237                     : GGATATGACATAATAGGGGGTGTAACAGGTCACAGAGAAATAATGAAAAAC-A----TAAA-AAATAAAGGCAATTTACGTTTTA--TTTACTCAATATACATGTTCGAACTCATCTTATTACAAGTA-TGTCTCAAAACAATGTCTAC------AT-----TTAAATAAAGTTTATAATTTACTTTACATATC-----AGTTGTACAGACAGACGCAGAGTAGACCCAAC---TGTTTCGGAAGCTGATTGTTAGTGT----------------------ATGTAGTCATATAGTGGGAGTAAT-ACATTTTCCAGATTGTCAAGTGCAGTT---------------CTG---CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-TA----ATTTAC---------GGGGACTATATTTC---TGA-C-TGTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109238                     : GGATATGACATAATAGGGGGTGCGACAGATCACAGAGAAATAATGAAAAAACA----TATA-AAATAAAGGCAATTAACGTTTTA--TTTACTCATTATACATGTTCGAACTC---TTATTACAAGTA-TGTCTCAAAACAATGTCTAC------AT-----TTAAATAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGAGAGAAGCAGAGTAGACCCAAC---TGTTTCGGAAGCTGATTGTTAGTGT----------------------ATGTAATCATATAGTGGGAGTAAT-ACATTTTCCAGATTGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TT---ACAA-------GTGTAC-CA----ATTTAT----------GGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCAT-TTTTC
gi|109239                     : GGATATGACGTAATAGGGGATGTAACAGATCACAGAGAAATAATGGAAAAAAAACCATATA-AAATAAAGGCAATTAACGTTTTA--TTTACTCATTATACATGTTCGAACTCATCTTATTACAAGTA-TGTCTCAAAACAATGTCTAC------AT-----TTAAATAAAGCTGATAATTTACTTTACATATC-----AGTTGTACAGACAGAAGCAGAGTAGACCCAAC---TGTTTCGGAAGCTAATTGTTAGTGT----------------------ATGTAGTAATATAGTGGAAGTAAT-ACATTTTCCAGATTGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TA---ACAG-------TTGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-CATTTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109240                     : GGATACAACATAATAGGCGGTGTAACAGATCACAGAGAAATAATGAAAAAA------CATA-AAATAAAGGCAATTAACGTTTTA--TTTACTCATTATACATGTTCGAACTCATCTTATTACAAGTA-TGTCTCAAAACAATGTCTAC------AT-----TTAAATAAAGCTTATAATTTACTTTGCATATC-----AGTTGTACAGATAGAAGTAGAGCAGACCCAAC---TGTTTCGGAAGCTGATTGTTAGTGT----------------------ATGTAGTCATATAGTGGGAGTAAT-ACATTTTCCAGATTGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-CA----GTTTAT----------GGGACTATATTTC---TGA-C-ATTTT-----TGTGTCT-CTGTCATTATGTTTT
gi|109241                     : GGATATGACATAATAGGGGGTGTAACAGATCACAGAGAAATAATGAAAAAC-A----TATA-AAATAAAGGCAATTAACATTTTA--TTTACTCAATATACATGTTCGAACTCATCTTATTACAA-TAGTGTCTCAAAACAATGTATAC------AT-----TTAAATAAAGCTTATAATTTACATTACATATA-----AGTTGTACAGACAGAAGCAGAGTAGACCCAAC---TGTTTCGGAAGCTGATTGTTGGTGT----------------------ATGTAGTCATATAGTGGGAGTAAT-ACATTTTCCAGATTGT--------------------------------CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109242                     : GGATATGACATAATAGGGTGTGTAACAGATCAGAGAGAAATAATGAAGAAAGA----TATA-AAATAAAGGCAATTAACGTTTTA--TTTACTTAATATACATGTTCGAACACATTTTAATACAAGCA-TGTCTTAAAACAATGTCTAC------AT-----TTAAATAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGACAGAAGCAGAGTAGACACAAC---TGCTTTGGAAGCTG-TTGTTAGTGTCTGTTTA-T-ATTAACATTGACATGTAGTCATATAGTGGGAGTAAT-TCATTTTCCAGATTGTCAAGTGCAGTC---------------CTG---TAAA----T--------ATATACT-TA---ACGG-------ATGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGATC-TTTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109243                     : GGATATGACATAATAGGGGGTGTTG-AGATCACAGAGAAATAATGAAAAAAG------ATG-AAATAAAGGCAATTAACGTTTTACATTTACTTTATATACATGTTCGAACTCATCTTATTACAAGTA-TGTCTTAAA-CAATGTCTAC------AT-----TTAAATAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGACAGAAGCTGAGTAGACCCAAC---TGTTTCGGAAGCTGTTTGTTAGTGTCTG-TTA-ATATTAACATTGACATGTAGTCATATAGTGGGAGTAAT-ACATTTTCAAGATTGTCAACTG
gi|109244                     :     ATGACGTAAGATGGGA-GTTACAGATTGCAGGGAAGTAATGAAAAAATA----TATA-AAAT---------TAATGTTTTA--TTGATCTAATATGCATGTTCGAAATCATTTTATTACACGCA-TGACCCAAAACAATGTCTACTTTTAGATAAAGCTTAAATAAAGCTTATGTTTTACTTAACATATC-----TGTTGT----ACAGAAGTGAAGCAAATCCA-------TTTTGGAAACAAATTGTTAGTATCAG--TA-A-A
gi|109245                     :                      GTAACAGATCACAGAGAAATAGTGAAAA--GC----CATATAAATAA-GGCAATTAACGTTTTA--TTTACGCAATATACGTGTTTGAAATCATCTTATTACAAGTA-TATCTCAAACCAATGTTCAC------AT-----TTAAATAAATCTGATATTGTACTTGACATATC-----TGTTGCACAGACAGAAGTGAAGCAGACCCAACTGTTGTTTCGGAGGCAGTTTGTTAGTGTATG-TTA-ATATTAATATTGACATGTAACCATATAGTGGAAGTCAT-ATATTTTCCAGAATGTCAAGTGCAGTCCGGAAAAGGGCA---CTG---CAAG----A--------ATAAACC-TT---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACGATATTTC---TTA-C-ATTCTGATGACGTGTCT-CTGTCATCATATTTTcat
gi|109246                     :                             ATCGCAGACAA-TAATGATATGCCT----TATA-AAATAAAGACA------GTTTCA--TTTATTCAATATGCATGTTAAAA-TCATTTTATTACATGTA-TTTCTTAAAACAATATTT-T------AT-----TTTAGTAAAGCTTATAGTTTGCTTTACATATT-----TGTTGGATAGACTGAAGTGACGCAGACCCAAT---TG-TTCGGAAG-TGA
gi|109247                     :                                                                                                                                                                                           TACATATCTAGATAGTTGTATAGGCGGATGTGAAGCAGACCAAAT---TATTTCGGAAGCAGATTGTTAGTGTCTG-TTACA-ATTAACATTGAAATTAAGCCATTTATTGGGAGAAAT-ACCTGCACCTGATTGTCAAGTGCAGT----------------CTGGAATAAA----A--------ATATATTGTTAAAACAGACATGACATATAC-AA----ATTTAA---------TGGGACCATATTCC---TGA-C-TTTTTGATGACGTATCTACTTCTCTCATATTTT
gi|109248                     :                                                                                                                                                                                                                                                 GGAAACAGATTGTTAGTATTCG-TTA-ATATTAACATTGACATGAAGCCTTAAATTGGGAGTAAT-ACATGTTCCAGATTGTCAAGTGCAGTC---------------CGG---AAAAAGGCTCTGGAGGAATATACT-TC---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACCATATTTCTTATGA-C------------GTGTCT-CTGTCATCATGTTTTC
gi|109249                     :                                                                                                                                                                                                                                                                                         CATGCAGCCATATACTTGGAGTATTTACATGTTCCAGAGTGTCACGTGCAGTCCGGGAAAAAAAGGCTCTG---CAAG----A--------AGACACT-TC---ACAG-------GTGCACACATGCCATATACAAATAGAAGGGAGACCATATTTC---TGA-C-TTTTTGATTACGCGTCT-CTTTCACCATGTTTCC
gi|109250                     :                                                                                                                                                                                                                                                                                                                                                            tgTG---CAAA----T--------ATATACT-TT---ACAG-------GTGAAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-TTGTCATCATTTTTTC
gi|109251                     :                                                                                                                                                                                                                                                                                                                                                              TG---CAAA----T--------ATGTACT-TT---ACTG-------GTGTAC-CA----ATTGAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCATTTTTTC





Alignments
lowQualScore                  :                                                    111111                                                                                                                                                                                                         9999999999999999999999                                                    333333333333333          1111111111111                                           111111111                            22222                        
lowQualScore                  :                                                    666666                           44                                         3                    999999  88888                                77777                  1             555                         1111111111111111111111                        3                           777777777777777   555    3333333333333       2  555    9999999      2  6666      111111111              555   2 2     11111       2                
lowQualScore                  :                                                    ......                           ..                                         .                    ......  .....                                .....                  .             ...                         ......................                        .                           ...............   ...    .............       .  ...    .......      .  ....      .........              ...   . .     .....       .                
lowQualScore                  :                                                    666666                           66                                         3                    666666  33333                                77777                  8             444                         4444444444444444444444                        1                           999999999999999   000    0000000000000       9  000    3333333      9  1111      444444444              000   9 9     44444       9                
consensus                     : GGATATGACATAATAGGGGGTGTAACAGATCACAGAGAAATAATGAAAAAANA----TATAAAATAAAGGCAATTAACGTTTTA--TTTACTCAATATACATGTTCGAACTCATCTTATTACAAGTA-TGTCTCAAAACAATGTCTAC------AT-----TTAAATAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGACAGAAGCGGAGTAGACCCAAC---TGTTTCGGAAGCTGATTGTTAGTGTCTG-TTA-A-ATTAACATTGACATGTAGTCATATAGTGGGAGTAAT-ACATTTTCCAGATTGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCATGTTTTC
Reference ( family-900 )      : GGATATGACATAATAGGGGGTGTAACAGATCACAGAGAAATAATGAAAAAAGA----TATAAAATAAAGGCAATTAACGTTTTA--TTTACTCAATATACATGTTCGAACTCATCTTATTACAAGTA-TGTCTCAAAACAATGTCTAC------AT-----TTAAATAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGACAGAAGCGGAGTAGACCCAAC---TGTTTCGGAAGCTGATTGTTAGTGTCTG-TTA-A-ATTAACATTGACATGTAGTCATATAGTGGGAGTAAT-ACATTTTCCAGATTGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109235                     : GGATATGACATAATAGGGGGCGTAACAGATCACAGAGAAATAATGAAAAAAGA----TATAAAATAAAGGCAATTAATGTTTTA--TTTACTTAATATACATGTTCAAACTCATCTTGTTACAAGTA-TATCTTAAAACAATGTCTAC------AT-----TTAAACAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGACAAAAGCAGTGTAGACCCAAC---TGTTTTGGAAGCTGATTGTTAGTGT----------------------ATGTAGTCATATAGTGGAAGTAAT-ACATTATCCAGATGGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109236                     : GAATATGACATAATAGGGGGTGTAACAGATCACAGAGAAATAATGAAAAAAGT----TATAAAATAAAAGCAATTAATGTTTTA--TTTACTTAATATACATGTTCAAACTCATCTTGTTACAAGTA-TGTCTTAAAACAATGTCTAC------GT-----TTAAATAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGACAGAAGCAGAGTAGACCCAAC---TGTTTTGGAAGCTGATTGTTAGTGTCTG-TTA-ATATTAACATTGACATGTAGTCATATAGTGGGAGTAAT-ACATTATCCATATTGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109237                     : GGATATGACATAATAGGGGGTGTAACAGGTCACAGAGAAATAATGAAAAAC-A----TAAAAAATAAAGGCAATTTACGTTTTA--TTTACTCAATATACATGTTCGAACTCATCTTATTACAAGTA-TGTCTCAAAACAATGTCTAC------AT-----TTAAATAAAGTTTATAATTTACTTTACATATC-----AGTTGTACAGACAGACGCAGAGTAGACCCAAC---TGTTTCGGAAGCTGATTGTTAGTGT----------------------ATGTAGTCATATAGTGGGAGTAAT-ACATTTTCCAGATTGTCAAGTGCAGTT---------------CTG---CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-TA----ATTTAC---------GGGGACTATATTTC---TGA-C-TGTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109238                     : GGATATGACATAATAGGGGGTGCGACAGATCACAGAGAAATAATGAAAAAACA----TATAAAATAAAGGCAATTAACGTTTTA--TTTACTCATTATACATGTTCGAACTC---TTATTACAAGTA-TGTCTCAAAACAATGTCTAC------AT-----TTAAATAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGAGAGAAGCAGAGTAGACCCAAC---TGTTTCGGAAGCTGATTGTTAGTGT----------------------ATGTAATCATATAGTGGGAGTAAT-ACATTTTCCAGATTGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TT---ACAA-------GTGTAC-CA----ATTTAT----------GGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCAT-TTTTC
gi|109239                     : GGATATGACGTAATAGGGGATGTAACAGATCACAGAGAAATAATGGAAAAAAAACCATATAAAATAAAGGCAATTAACGTTTTA--TTTACTCATTATACATGTTCGAACTCATCTTATTACAAGTA-TGTCTCAAAACAATGTCTAC------AT-----TTAAATAAAGCTGATAATTTACTTTACATATC-----AGTTGTACAGACAGAAGCAGAGTAGACCCAAC---TGTTTCGGAAGCTAATTGTTAGTGT----------------------ATGTAGTAATATAGTGGAAGTAAT-ACATTTTCCAGATTGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TA---ACAG-------TTGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-CATTTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109240                     : GGATACAACATAATAGGCGGTGTAACAGATCACAGAGAAATAATGAAAAAA------CATAAAATAAAGGCAATTAACGTTTTA--TTTACTCATTATACATGTTCGAACTCATCTTATTACAAGTA-TGTCTCAAAACAATGTCTAC------AT-----TTAAATAAAGCTTATAATTTACTTTGCATATC-----AGTTGTACAGATAGAAGTAGAGCAGACCCAAC---TGTTTCGGAAGCTGATTGTTAGTGT----------------------ATGTAGTCATATAGTGGGAGTAAT-ACATTTTCCAGATTGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-CA----GTTTAT----------GGGACTATATTTC---TGA-C-ATTTT-----TGTGTCT-CTGTCATTATGTTTT
gi|109241                     : GGATATGACATAATAGGGGGTGTAACAGATCACAGAGAAATAATGAAAAAC-A----TATAAAATAAAGGCAATTAACATTTTA--TTTACTCAATATACATGTTCGAACTCATCTTATTACAA-TAGTGTCTCAAAACAATGTATAC------AT-----TTAAATAAAGCTTATAATTTACATTACATATA-----AGTTGTACAGACAGAAGCAGAGTAGACCCAAC---TGTTTCGGAAGCTGATTGTTGGTGT----------------------ATGTAGTCATATAGTGGGAGTAAT-ACATTTTCCAGATTGT--------------------------------CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109242                     : GGATATGACATAATAGGGTGTGTAACAGATCAGAGAGAAATAATGAAGAAAGA----TATAAAATAAAGGCAATTAACGTTTTA--TTTACTTAATATACATGTTCGAACACATTTTAATACAAGCA-TGTCTTAAAACAATGTCTAC------AT-----TTAAATAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGACAGAAGCAGAGTAGACACAAC---TGCTTTGGAAGCTG-TTGTTAGTGTCTGTTTA-T-ATTAACATTGACATGTAGTCATATAGTGGGAGTAAT-TCATTTTCCAGATTGTCAAGTGCAGTC---------------CTG---TAAA----T--------ATATACT-TA---ACGG-------ATGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGATC-TTTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109243                     : GGATATGACATAATAGGGGGTGTTG-AGATCACAGAGAAATAATGAAAAAAGA----TG--AAATAAAGGCAATTAACGTTTTACATTTACTTTATATACATGTTCGAACTCATCTTATTACAAGTA-TGTCTTAAA-CAATGTCTAC------AT-----TTAAATAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGACAGAAGCTGAGTAGACCCAAC---TGTTTCGGAAGCTGTTTGTTAGTGTCTG-TTA-ATATTAACATTGACATGTAGTCATATAGTGGGAGTAAT-ACATTTTCAAGATTGTCAACTG
gi|109244                     :     ATGACGTAAGATGGGA-GTTACAGATTGCAGGGAAGTAATGAAAAAATA----TATAAAAT---------TAATGTTTTA--TTGATCTAATATGCATGTTCGAAATCATTTTATTACACGCA-TGACCCAAAACAATGTCTACTTTTAGATAAAGCTTAAATAAAGCTTATGTTTTACTTAACATATC-----TGTTGT----ACAGAAGTGAAGCAAATCCA-------TTTTGGAAACAAATTGTTAGTATCAG--TA-A-A
gi|109245                     :                      GTAACAGATCACAGAGAAATAGTGAAAAGCCA----TATAAA-TAA-GGCAATTAACGTTTTA--TTTACGCAATATACGTGTTTGAAATCATCTTATTACAAGTA-TATCTCAAACCAATGTTCAC------AT-----TTAAATAAATCTGATATTGTACTTGACATATC-----TGTTGCACAGACAGAAGTGAAGCAGACCCAACTGTTGTTTCGGAGGCAGTTTGTTAGTGTATG-TTA-ATATTAATATTGACATGTAACCATATAGTGGAAGTCAT-ATATTTTCCAGAATGTCAAGTGCAGTCCGGAAAAGGGCA---CTG---CAAG----A--------ATAAACC-TT---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACGATATTTC---TTA-C-ATTCTGATGACGTGTCT-CTGTCATCATATTTTcat
gi|109246                     :                             ATCGCAGACAA-TAATGATATGCCT----TATAAAATAAAGACA------GTTTCA--TTTATTCAATATGCATGTTAAAA-TCATTTTATTACATGTA-TTTCTTAAAACAATATTT-T------AT-----TTTAGTAAAGCTTATAGTTTGCTTTACATATT-----TGTTGGATAGACTGAAGTGACGCAGACCCAAT---TG-TTCGGAAG-TGA
gi|109247                     :                                                                                                                                                                                          TACATATCTAGATAGTTGTATAGGCGGATGTGAAGCAGACCAAAT---TATTTCGGAAGCAGATTGTTAGTGTCTG-TTACA-ATTAACATTGAAATTAAGCCATTTATTGGGAGAAAT-ACCTGCACCTGATTGTCAAGTGCAGT----------------CTGGAATAAA----A--------ATATATTGTTAAAACAGACATGACATATAC-AA----ATTTAA---------TGGGACCATATTCC---TGA-C-TTTTTGATGACGTATCTACTTCTCTCATATTTT
gi|109248                     :                                                                                                                                                                                                                                                GGAAACAGATTGTTAGTATTCG-TTA-ATATTAACATTGACATGAAGCCTTAAATTGGGAGTAAT-ACATGTTCCAGATTGTCAAGTGCAGTC---------------CGG---AAAAAGGCTCTGGAGGAATATACT-TC---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACCATATTTCTTATGA-C------------GTGTCT-CTGTCATCATGTTTTC
gi|109249                     :                                                                                                                                                                                                                                                                                        CATGCAGCCATATACTTGGAGTATTTACATGTTCCAGAGTGTCACGTGCAGTCCGGGAAAAAAAGGCTCTG---CAAG----A--------AGACACT-TC---ACAG-------GTGCACACATGCCATATACAAATAGAAGGGAGACCATATTTC---TGA-C-TTTTTGATTACGCGTCT-CTTTCACCATGTTTCC
gi|109250                     :                                                                                                                                                                                                                                                                                                                                                           tgTG---CAAA----T--------ATATACT-TT---ACAG-------GTGAAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-TTGTCATCATTTTTTC
gi|109251                     :                                                                                                                                                                                                                                                                                                                                                             TG---CAAA----T--------ATGTACT-TT---ACTG-------GTGTAC-CA----ATTGAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCATTTTTTC





Alignments
lowQualScore                  :                                                                                                                                                                                                                                                                   9999999999999999999999                                                    333333333333333          1111111111111                                           111111111                            22222                        
lowQualScore                  :                                                   44 7777  1                        44                                         3                    999999  88888                                77777                  1             555                         1111111111111111111111                        3                           777777777777777   555    3333333333333       2  555    9999999      2  6666      111111111              555   2 2     11111       2                
lowQualScore                  :                                                   .. ....  .                        ..                                         .                    ......  .....                                .....                  .             ...                         ......................                        .                           ...............   ...    .............       .  ...    .......      .  ....      .........              ...   . .     .....       .                
lowQualScore                  :                                                   22 1111  3                        66                                         3                    666666  33333                                77777                  8             444                         4444444444444444444444                        1                           999999999999999   000    0000000000000       9  000    3333333      9  1111      444444444              000   9 9     44444       9                
consensus                     : GGATATGACATAATAGGGGGTGTAACAGATCACAGAGAAATAATGAAAAAACA----TATAAAATAAAGGCAATTAACGTTTTA--TTTACTCAATATACATGTTCGAACTCATCTTATTACAAGTA-TGTCTCAAAACAATGTCTAC------AT-----TTAAATAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGACAGAAGCGGAGTAGACCCAAC---TGTTTCGGAAGCTGATTGTTAGTGTCTG-TTA-A-ATTAACATTGACATGTAGTCATATAGTGGGAGTAAT-ACATTTTCCAGATTGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCATGTTTTC
Reference ( family-900 )      : GGATATGACATAATAGGGGGTGTAACAGATCACAGAGAAATAATGAAAAAANA----TATAAAATAAAGGCAATTAACGTTTTA--TTTACTCAATATACATGTTCGAACTCATCTTATTACAAGTA-TGTCTCAAAACAATGTCTAC------AT-----TTAAATAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGACAGAAGCGGAGTAGACCCAAC---TGTTTCGGAAGCTGATTGTTAGTGTCTG-TTA-A-ATTAACATTGACATGTAGTCATATAGTGGGAGTAAT-ACATTTTCCAGATTGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109235                     : GGATATGACATAATAGGGGGCGTAACAGATCACAGAGAAATAATGAAAAAAGA----TATAAAATAAAGGCAATTAATGTTTTA--TTTACTTAATATACATGTTCAAACTCATCTTGTTACAAGTA-TATCTTAAAACAATGTCTAC------AT-----TTAAACAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGACAAAAGCAGTGTAGACCCAAC---TGTTTTGGAAGCTGATTGTTAGTGT----------------------ATGTAGTCATATAGTGGAAGTAAT-ACATTATCCAGATGGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109236                     : GAATATGACATAATAGGGGGTGTAACAGATCACAGAGAAATAATGAAAAAAGT----TATAAAATAAAAGCAATTAATGTTTTA--TTTACTTAATATACATGTTCAAACTCATCTTGTTACAAGTA-TGTCTTAAAACAATGTCTAC------GT-----TTAAATAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGACAGAAGCAGAGTAGACCCAAC---TGTTTTGGAAGCTGATTGTTAGTGTCTG-TTA-ATATTAACATTGACATGTAGTCATATAGTGGGAGTAAT-ACATTATCCATATTGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109237                     : GGATATGACATAATAGGGGGTGTAACAGGTCACAGAGAAATAATGAAAAA-CA----TAAAAAATAAAGGCAATTTACGTTTTA--TTTACTCAATATACATGTTCGAACTCATCTTATTACAAGTA-TGTCTCAAAACAATGTCTAC------AT-----TTAAATAAAGTTTATAATTTACTTTACATATC-----AGTTGTACAGACAGACGCAGAGTAGACCCAAC---TGTTTCGGAAGCTGATTGTTAGTGT----------------------ATGTAGTCATATAGTGGGAGTAAT-ACATTTTCCAGATTGTCAAGTGCAGTT---------------CTG---CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-TA----ATTTAC---------GGGGACTATATTTC---TGA-C-TGTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109238                     : GGATATGACATAATAGGGGGTGCGACAGATCACAGAGAAATAATGAAAAAACA----TATAAAATAAAGGCAATTAACGTTTTA--TTTACTCATTATACATGTTCGAACTC---TTATTACAAGTA-TGTCTCAAAACAATGTCTAC------AT-----TTAAATAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGAGAGAAGCAGAGTAGACCCAAC---TGTTTCGGAAGCTGATTGTTAGTGT----------------------ATGTAATCATATAGTGGGAGTAAT-ACATTTTCCAGATTGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TT---ACAA-------GTGTAC-CA----ATTTAT----------GGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCAT-TTTTC
gi|109239                     : GGATATGACGTAATAGGGGATGTAACAGATCACAGAGAAATAATGGAAAAAAAACCATATAAAATAAAGGCAATTAACGTTTTA--TTTACTCATTATACATGTTCGAACTCATCTTATTACAAGTA-TGTCTCAAAACAATGTCTAC------AT-----TTAAATAAAGCTGATAATTTACTTTACATATC-----AGTTGTACAGACAGAAGCAGAGTAGACCCAAC---TGTTTCGGAAGCTAATTGTTAGTGT----------------------ATGTAGTAATATAGTGGAAGTAAT-ACATTTTCCAGATTGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TA---ACAG-------TTGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-CATTTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109240                     : GGATACAACATAATAGGCGGTGTAACAGATCACAGAGAAATAATGAAAAAACA----TA--AAATAAAGGCAATTAACGTTTTA--TTTACTCATTATACATGTTCGAACTCATCTTATTACAAGTA-TGTCTCAAAACAATGTCTAC------AT-----TTAAATAAAGCTTATAATTTACTTTGCATATC-----AGTTGTACAGATAGAAGTAGAGCAGACCCAAC---TGTTTCGGAAGCTGATTGTTAGTGT----------------------ATGTAGTCATATAGTGGGAGTAAT-ACATTTTCCAGATTGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-CA----GTTTAT----------GGGACTATATTTC---TGA-C-ATTTT-----TGTGTCT-CTGTCATTATGTTTT
gi|109241                     : GGATATGACATAATAGGGGGTGTAACAGATCACAGAGAAATAATGAAAAA-CA----TATAAAATAAAGGCAATTAACATTTTA--TTTACTCAATATACATGTTCGAACTCATCTTATTACAA-TAGTGTCTCAAAACAATGTATAC------AT-----TTAAATAAAGCTTATAATTTACATTACATATA-----AGTTGTACAGACAGAAGCAGAGTAGACCCAAC---TGTTTCGGAAGCTGATTGTTGGTGT----------------------ATGTAGTCATATAGTGGGAGTAAT-ACATTTTCCAGATTGT--------------------------------CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109242                     : GGATATGACATAATAGGGTGTGTAACAGATCAGAGAGAAATAATGAAGAAAGA----TATAAAATAAAGGCAATTAACGTTTTA--TTTACTTAATATACATGTTCGAACACATTTTAATACAAGCA-TGTCTTAAAACAATGTCTAC------AT-----TTAAATAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGACAGAAGCAGAGTAGACACAAC---TGCTTTGGAAGCTG-TTGTTAGTGTCTGTTTA-T-ATTAACATTGACATGTAGTCATATAGTGGGAGTAAT-TCATTTTCCAGATTGTCAAGTGCAGTC---------------CTG---TAAA----T--------ATATACT-TA---ACGG-------ATGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGATC-TTTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109243                     : GGATATGACATAATAGGGGGTGTTG-AGATCACAGAGAAATAATGAAAAAAGA----TG--AAATAAAGGCAATTAACGTTTTACATTTACTTTATATACATGTTCGAACTCATCTTATTACAAGTA-TGTCTTAAA-CAATGTCTAC------AT-----TTAAATAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGACAGAAGCTGAGTAGACCCAAC---TGTTTCGGAAGCTGTTTGTTAGTGTCTG-TTA-ATATTAACATTGACATGTAGTCATATAGTGGGAGTAAT-ACATTTTCAAGATTGTCAACTG
gi|109244                     :     ATGACGTAAGATGGGA-GTTACAGATTGCAGGGAAGTAATGAAAAAATA----TATAAAAT---------TAATGTTTTA--TTGATCTAATATGCATGTTCGAAATCATTTTATTACACGCA-TGACCCAAAACAATGTCTACTTTTAGATAAAGCTTAAATAAAGCTTATGTTTTACTTAACATATC-----TGTTGT----ACAGAAGTGAAGCAAATCCA-------TTTTGGAAACAAATTGTTAGTATCAG--TA-A-A
gi|109245                     :                      GTAACAGATCACAGAGAAATAGTGAAAAGCCA----TATAAA-TAA-GGCAATTAACGTTTTA--TTTACGCAATATACGTGTTTGAAATCATCTTATTACAAGTA-TATCTCAAACCAATGTTCAC------AT-----TTAAATAAATCTGATATTGTACTTGACATATC-----TGTTGCACAGACAGAAGTGAAGCAGACCCAACTGTTGTTTCGGAGGCAGTTTGTTAGTGTATG-TTA-ATATTAATATTGACATGTAACCATATAGTGGAAGTCAT-ATATTTTCCAGAATGTCAAGTGCAGTCCGGAAAAGGGCA---CTG---CAAG----A--------ATAAACC-TT---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACGATATTTC---TTA-C-ATTCTGATGACGTGTCT-CTGTCATCATATTTTcat
gi|109246                     :                             ATCGCAGACAA-TAATGATATGCCT----TATAAAATAAAGACA------GTTTCA--TTTATTCAATATGCATGTTAAAA-TCATTTTATTACATGTA-TTTCTTAAAACAATATTT-T------AT-----TTTAGTAAAGCTTATAGTTTGCTTTACATATT-----TGTTGGATAGACTGAAGTGACGCAGACCCAAT---TG-TTCGGAAG-TGA
gi|109247                     :                                                                                                                                                                                          TACATATCTAGATAGTTGTATAGGCGGATGTGAAGCAGACCAAAT---TATTTCGGAAGCAGATTGTTAGTGTCTG-TTACA-ATTAACATTGAAATTAAGCCATTTATTGGGAGAAAT-ACCTGCACCTGATTGTCAAGTGCAGT----------------CTGGAATAAA----A--------ATATATTGTTAAAACAGACATGACATATAC-AA----ATTTAA---------TGGGACCATATTCC---TGA-C-TTTTTGATGACGTATCTACTTCTCTCATATTTT
gi|109248                     :                                                                                                                                                                                                                                                GGAAACAGATTGTTAGTATTCG-TTA-ATATTAACATTGACATGAAGCCTTAAATTGGGAGTAAT-ACATGTTCCAGATTGTCAAGTGCAGTC---------------CGG---AAAAAGGCTCTGGAGGAATATACT-TC---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACCATATTTCTTATGA-C------------GTGTCT-CTGTCATCATGTTTTC
gi|109249                     :                                                                                                                                                                                                                                                                                        CATGCAGCCATATACTTGGAGTATTTACATGTTCCAGAGTGTCACGTGCAGTCCGGGAAAAAAAGGCTCTG---CAAG----A--------AGACACT-TC---ACAG-------GTGCACACATGCCATATACAAATAGAAGGGAGACCATATTTC---TGA-C-TTTTTGATTACGCGTCT-CTTTCACCATGTTTCC
gi|109250                     :                                                                                                                                                                                                                                                                                                                                                           tgTG---CAAA----T--------ATATACT-TT---ACAG-------GTGAAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-TTGTCATCATTTTTTC
gi|109251                     :                                                                                                                                                                                                                                                                                                                                                             TG---CAAA----T--------ATGTACT-TT---ACTG-------GTGTAC-CA----ATTGAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCATTTTTTC





Alignments
lowQualScore                  :                                                                                                                                                                                                                                                                   9999999999999999999999                                                    333333333333333          1111111111111                                           111111111                            22222                        
lowQualScore                  :                                                    7777    1                        44                                         3                    999999  88888                                77777                  1             555                         1111111111111111111111                        3                           777777777777777   555    3333333333333       2  555    9999999      2  6666      111111111              555   2 2     11111       2                
lowQualScore                  :                                                    ....    .                        ..                                         .                    ......  .....                                .....                  .             ...                         ......................                        .                           ...............   ...    .............       .  ...    .......      .  ....      .........              ...   . .     .....       .                
lowQualScore                  :                                                    1111    3                        66                                         3                    666666  33333                                77777                  8             444                         4444444444444444444444                        1                           999999999999999   000    0000000000000       9  000    3333333      9  1111      444444444              000   9 9     44444       9                
consensus                     : GGATATGACATAATAGGGGGTGTAACAGATCACAGAGAAATAATGAAAAAA----CATATAAAATAAAGGCAATTAACGTTTTA--TTTACTCAATATACATGTTCGAACTCATCTTATTACAAGTA-TGTCTCAAAACAATGTCTAC------AT-----TTAAATAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGACAGAAGCGGAGTAGACCCAAC---TGTTTCGGAAGCTGATTGTTAGTGTCTG-TTA-A-ATTAACATTGACATGTAGTCATATAGTGGGAGTAAT-ACATTTTCCAGATTGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCATGTTTTC
Reference ( family-900 )      : GGATATGACATAATAGGGGGTGTAACAGATCACAGAGAAATAATGAAAAAA----CATATAAAATAAAGGCAATTAACGTTTTA--TTTACTCAATATACATGTTCGAACTCATCTTATTACAAGTA-TGTCTCAAAACAATGTCTAC------AT-----TTAAATAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGACAGAAGCGGAGTAGACCCAAC---TGTTTCGGAAGCTGATTGTTAGTGTCTG-TTA-A-ATTAACATTGACATGTAGTCATATAGTGGGAGTAAT-ACATTTTCCAGATTGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109235                     : GGATATGACATAATAGGGGGCGTAACAGATCACAGAGAAATAATGAAAAAA----GATATAAAATAAAGGCAATTAATGTTTTA--TTTACTTAATATACATGTTCAAACTCATCTTGTTACAAGTA-TATCTTAAAACAATGTCTAC------AT-----TTAAACAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGACAAAAGCAGTGTAGACCCAAC---TGTTTTGGAAGCTGATTGTTAGTGT----------------------ATGTAGTCATATAGTGGAAGTAAT-ACATTATCCAGATGGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109236                     : GAATATGACATAATAGGGGGTGTAACAGATCACAGAGAAATAATGAAAAAA----GTTATAAAATAAAAGCAATTAATGTTTTA--TTTACTTAATATACATGTTCAAACTCATCTTGTTACAAGTA-TGTCTTAAAACAATGTCTAC------GT-----TTAAATAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGACAGAAGCAGAGTAGACCCAAC---TGTTTTGGAAGCTGATTGTTAGTGTCTG-TTA-ATATTAACATTGACATGTAGTCATATAGTGGGAGTAAT-ACATTATCCATATTGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109237                     : GGATATGACATAATAGGGGGTGTAACAGGTCACAGAGAAATAATGAAAAA-----CATAAAAAATAAAGGCAATTTACGTTTTA--TTTACTCAATATACATGTTCGAACTCATCTTATTACAAGTA-TGTCTCAAAACAATGTCTAC------AT-----TTAAATAAAGTTTATAATTTACTTTACATATC-----AGTTGTACAGACAGACGCAGAGTAGACCCAAC---TGTTTCGGAAGCTGATTGTTAGTGT----------------------ATGTAGTCATATAGTGGGAGTAAT-ACATTTTCCAGATTGTCAAGTGCAGTT---------------CTG---CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-TA----ATTTAC---------GGGGACTATATTTC---TGA-C-TGTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109238                     : GGATATGACATAATAGGGGGTGCGACAGATCACAGAGAAATAATGAAAAAA----CATATAAAATAAAGGCAATTAACGTTTTA--TTTACTCATTATACATGTTCGAACTC---TTATTACAAGTA-TGTCTCAAAACAATGTCTAC------AT-----TTAAATAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGAGAGAAGCAGAGTAGACCCAAC---TGTTTCGGAAGCTGATTGTTAGTGT----------------------ATGTAATCATATAGTGGGAGTAAT-ACATTTTCCAGATTGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TT---ACAA-------GTGTAC-CA----ATTTAT----------GGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCAT-TTTTC
gi|109239                     : GGATATGACGTAATAGGGGATGTAACAGATCACAGAGAAATAATGGAAAAAAAACCATATAAAATAAAGGCAATTAACGTTTTA--TTTACTCATTATACATGTTCGAACTCATCTTATTACAAGTA-TGTCTCAAAACAATGTCTAC------AT-----TTAAATAAAGCTGATAATTTACTTTACATATC-----AGTTGTACAGACAGAAGCAGAGTAGACCCAAC---TGTTTCGGAAGCTAATTGTTAGTGT----------------------ATGTAGTAATATAGTGGAAGTAAT-ACATTTTCCAGATTGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TA---ACAG-------TTGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-CATTTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109240                     : GGATACAACATAATAGGCGGTGTAACAGATCACAGAGAAATAATGAAAAAA----CATA--AAATAAAGGCAATTAACGTTTTA--TTTACTCATTATACATGTTCGAACTCATCTTATTACAAGTA-TGTCTCAAAACAATGTCTAC------AT-----TTAAATAAAGCTTATAATTTACTTTGCATATC-----AGTTGTACAGATAGAAGTAGAGCAGACCCAAC---TGTTTCGGAAGCTGATTGTTAGTGT----------------------ATGTAGTCATATAGTGGGAGTAAT-ACATTTTCCAGATTGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-CA----GTTTAT----------GGGACTATATTTC---TGA-C-ATTTT-----TGTGTCT-CTGTCATTATGTTTT
gi|109241                     : GGATATGACATAATAGGGGGTGTAACAGATCACAGAGAAATAATGAAAA-A----CATATAAAATAAAGGCAATTAACATTTTA--TTTACTCAATATACATGTTCGAACTCATCTTATTACAA-TAGTGTCTCAAAACAATGTATAC------AT-----TTAAATAAAGCTTATAATTTACATTACATATA-----AGTTGTACAGACAGAAGCAGAGTAGACCCAAC---TGTTTCGGAAGCTGATTGTTGGTGT----------------------ATGTAGTCATATAGTGGGAGTAAT-ACATTTTCCAGATTGT--------------------------------CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109242                     : GGATATGACATAATAGGGTGTGTAACAGATCAGAGAGAAATAATGAAGAAA----GATATAAAATAAAGGCAATTAACGTTTTA--TTTACTTAATATACATGTTCGAACACATTTTAATACAAGCA-TGTCTTAAAACAATGTCTAC------AT-----TTAAATAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGACAGAAGCAGAGTAGACACAAC---TGCTTTGGAAGCTG-TTGTTAGTGTCTGTTTA-T-ATTAACATTGACATGTAGTCATATAGTGGGAGTAAT-TCATTTTCCAGATTGTCAAGTGCAGTC---------------CTG---TAAA----T--------ATATACT-TA---ACGG-------ATGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGATC-TTTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109243                     : GGATATGACATAATAGGGGGTGTTG-AGATCACAGAGAAATAATGAAAAAA----GATG--AAATAAAGGCAATTAACGTTTTACATTTACTTTATATACATGTTCGAACTCATCTTATTACAAGTA-TGTCTTAAA-CAATGTCTAC------AT-----TTAAATAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGACAGAAGCTGAGTAGACCCAAC---TGTTTCGGAAGCTGTTTGTTAGTGTCTG-TTA-ATATTAACATTGACATGTAGTCATATAGTGGGAGTAAT-ACATTTTCAAGATTGTCAACTG
gi|109244                     :     ATGACGTAAGATGGGA-GTTACAGATTGCAGGGAAGTAATGAAAAAA----TATATAAAAT---------TAATGTTTTA--TTGATCTAATATGCATGTTCGAAATCATTTTATTACACGCA-TGACCCAAAACAATGTCTACTTTTAGATAAAGCTTAAATAAAGCTTATGTTTTACTTAACATATC-----TGTTGT----ACAGAAGTGAAGCAAATCCA-------TTTTGGAAACAAATTGTTAGTATCAG--TA-A-A
gi|109245                     :                      GTAACAGATCACAGAGAAATAGTGAAAAGC----CATATAAA-TAA-GGCAATTAACGTTTTA--TTTACGCAATATACGTGTTTGAAATCATCTTATTACAAGTA-TATCTCAAACCAATGTTCAC------AT-----TTAAATAAATCTGATATTGTACTTGACATATC-----TGTTGCACAGACAGAAGTGAAGCAGACCCAACTGTTGTTTCGGAGGCAGTTTGTTAGTGTATG-TTA-ATATTAATATTGACATGTAACCATATAGTGGAAGTCAT-ATATTTTCCAGAATGTCAAGTGCAGTCCGGAAAAGGGCA---CTG---CAAG----A--------ATAAACC-TT---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACGATATTTC---TTA-C-ATTCTGATGACGTGTCT-CTGTCATCATATTTTcat
gi|109246                     :                             ATCGCAGACAA-TAATGATATGC----CTTATAAAATAAAGACA------GTTTCA--TTTATTCAATATGCATGTTAAAA-TCATTTTATTACATGTA-TTTCTTAAAACAATATTT-T------AT-----TTTAGTAAAGCTTATAGTTTGCTTTACATATT-----TGTTGGATAGACTGAAGTGACGCAGACCCAAT---TG-TTCGGAAG-TGA
gi|109247                     :                                                                                                                                                                                          TACATATCTAGATAGTTGTATAGGCGGATGTGAAGCAGACCAAAT---TATTTCGGAAGCAGATTGTTAGTGTCTG-TTACA-ATTAACATTGAAATTAAGCCATTTATTGGGAGAAAT-ACCTGCACCTGATTGTCAAGTGCAGT----------------CTGGAATAAA----A--------ATATATTGTTAAAACAGACATGACATATAC-AA----ATTTAA---------TGGGACCATATTCC---TGA-C-TTTTTGATGACGTATCTACTTCTCTCATATTTT
gi|109248                     :                                                                                                                                                                                                                                                GGAAACAGATTGTTAGTATTCG-TTA-ATATTAACATTGACATGAAGCCTTAAATTGGGAGTAAT-ACATGTTCCAGATTGTCAAGTGCAGTC---------------CGG---AAAAAGGCTCTGGAGGAATATACT-TC---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACCATATTTCTTATGA-C------------GTGTCT-CTGTCATCATGTTTTC
gi|109249                     :                                                                                                                                                                                                                                                                                        CATGCAGCCATATACTTGGAGTATTTACATGTTCCAGAGTGTCACGTGCAGTCCGGGAAAAAAAGGCTCTG---CAAG----A--------AGACACT-TC---ACAG-------GTGCACACATGCCATATACAAATAGAAGGGAGACCATATTTC---TGA-C-TTTTTGATTACGCGTCT-CTTTCACCATGTTTCC
gi|109250                     :                                                                                                                                                                                                                                                                                                                                                           tgTG---CAAA----T--------ATATACT-TT---ACAG-------GTGAAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-TTGTCATCATTTTTTC
gi|109251                     :                                                                                                                                                                                                                                                                                                                                                             TG---CAAA----T--------ATGTACT-TT---ACTG-------GTGTAC-CA----ATTGAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCATTTTTTC





Alignments
lowQualScore                  :                                                                                                                                                                                                                                                                   9999999999999999999999                                                    333333333333333          1111111111111                                           111111111                            22222                        
lowQualScore                  :                                                    7777    1                        44                                         3                    999999  88888                                77777                  1             555                         1111111111111111111111                        3                           777777777777777   555    3333333333333       2  555    9999999      2  6666      111111111              555   2 2     11111       2                
lowQualScore                  :                                                    ....    .                        ..                                         .                    ......  .....                                .....                  .             ...                         ......................                        .                           ...............   ...    .............       .  ...    .......      .  ....      .........              ...   . .     .....       .                
lowQualScore                  :                                                    1111    3                        66                                         3                    666666  33333                                77777                  8             444                         4444444444444444444444                        1                           999999999999999   000    0000000000000       9  000    3333333      9  1111      444444444              000   9 9     44444       9                
consensus                     : GGATATGACATAATAGGGGGTGTAACAGATCACAGAGAAATAATGAAAAAA----CATATAAAATAAAGGCAATTAACGTTTTA--TTTACTCAATATACATGTTCGAACTCATCTTATTACAAGTA-TGTCTCAAAACAATGTCTAC------AT-----TTAAATAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGACAGAAGCGGAGTAGACCCAAC---TGTTTCGGAAGCTGATTGTTAGTGTCTG-TTA-A-ATTAACATTGACATGTAGTCATATAGTGGGAGTAAT-ACATTTTCCAGATTGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCATGTTTTC
Reference ( family-900 )      : GGATATGACATAATAGGGGGTGTAACAGATCACAGAGAAATAATGAAAAAA----CATATAAAATAAAGGCAATTAACGTTTTA--TTTACTCAATATACATGTTCGAACTCATCTTATTACAAGTA-TGTCTCAAAACAATGTCTAC------AT-----TTAAATAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGACAGAAGCGGAGTAGACCCAAC---TGTTTCGGAAGCTGATTGTTAGTGTCTG-TTA-A-ATTAACATTGACATGTAGTCATATAGTGGGAGTAAT-ACATTTTCCAGATTGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109235                     : GGATATGACATAATAGGGGGCGTAACAGATCACAGAGAAATAATGAAAAAA----GATATAAAATAAAGGCAATTAATGTTTTA--TTTACTTAATATACATGTTCAAACTCATCTTGTTACAAGTA-TATCTTAAAACAATGTCTAC------AT-----TTAAACAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGACAAAAGCAGTGTAGACCCAAC---TGTTTTGGAAGCTGATTGTTAGTGT----------------------ATGTAGTCATATAGTGGAAGTAAT-ACATTATCCAGATGGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109236                     : GAATATGACATAATAGGGGGTGTAACAGATCACAGAGAAATAATGAAAAAA----GTTATAAAATAAAAGCAATTAATGTTTTA--TTTACTTAATATACATGTTCAAACTCATCTTGTTACAAGTA-TGTCTTAAAACAATGTCTAC------GT-----TTAAATAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGACAGAAGCAGAGTAGACCCAAC---TGTTTTGGAAGCTGATTGTTAGTGTCTG-TTA-ATATTAACATTGACATGTAGTCATATAGTGGGAGTAAT-ACATTATCCATATTGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109237                     : GGATATGACATAATAGGGGGTGTAACAGGTCACAGAGAAATAATGAAAAA-----CATAAAAAATAAAGGCAATTTACGTTTTA--TTTACTCAATATACATGTTCGAACTCATCTTATTACAAGTA-TGTCTCAAAACAATGTCTAC------AT-----TTAAATAAAGTTTATAATTTACTTTACATATC-----AGTTGTACAGACAGACGCAGAGTAGACCCAAC---TGTTTCGGAAGCTGATTGTTAGTGT----------------------ATGTAGTCATATAGTGGGAGTAAT-ACATTTTCCAGATTGTCAAGTGCAGTT---------------CTG---CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-TA----ATTTAC---------GGGGACTATATTTC---TGA-C-TGTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109238                     : GGATATGACATAATAGGGGGTGCGACAGATCACAGAGAAATAATGAAAAAA----CATATAAAATAAAGGCAATTAACGTTTTA--TTTACTCATTATACATGTTCGAACTC---TTATTACAAGTA-TGTCTCAAAACAATGTCTAC------AT-----TTAAATAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGAGAGAAGCAGAGTAGACCCAAC---TGTTTCGGAAGCTGATTGTTAGTGT----------------------ATGTAATCATATAGTGGGAGTAAT-ACATTTTCCAGATTGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TT---ACAA-------GTGTAC-CA----ATTTAT----------GGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCAT-TTTTC
gi|109239                     : GGATATGACGTAATAGGGGATGTAACAGATCACAGAGAAATAATGGAAAAAAAACCATATAAAATAAAGGCAATTAACGTTTTA--TTTACTCATTATACATGTTCGAACTCATCTTATTACAAGTA-TGTCTCAAAACAATGTCTAC------AT-----TTAAATAAAGCTGATAATTTACTTTACATATC-----AGTTGTACAGACAGAAGCAGAGTAGACCCAAC---TGTTTCGGAAGCTAATTGTTAGTGT----------------------ATGTAGTAATATAGTGGAAGTAAT-ACATTTTCCAGATTGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TA---ACAG-------TTGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-CATTTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109240                     : GGATACAACATAATAGGCGGTGTAACAGATCACAGAGAAATAATGAAAAAA----CATA--AAATAAAGGCAATTAACGTTTTA--TTTACTCATTATACATGTTCGAACTCATCTTATTACAAGTA-TGTCTCAAAACAATGTCTAC------AT-----TTAAATAAAGCTTATAATTTACTTTGCATATC-----AGTTGTACAGATAGAAGTAGAGCAGACCCAAC---TGTTTCGGAAGCTGATTGTTAGTGT----------------------ATGTAGTCATATAGTGGGAGTAAT-ACATTTTCCAGATTGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-CA----GTTTAT----------GGGACTATATTTC---TGA-C-ATTTT-----TGTGTCT-CTGTCATTATGTTTT
gi|109241                     : GGATATGACATAATAGGGGGTGTAACAGATCACAGAGAAATAATGAAAA-A----CATATAAAATAAAGGCAATTAACATTTTA--TTTACTCAATATACATGTTCGAACTCATCTTATTACAA-TAGTGTCTCAAAACAATGTATAC------AT-----TTAAATAAAGCTTATAATTTACATTACATATA-----AGTTGTACAGACAGAAGCAGAGTAGACCCAAC---TGTTTCGGAAGCTGATTGTTGGTGT----------------------ATGTAGTCATATAGTGGGAGTAAT-ACATTTTCCAGATTGT--------------------------------CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109242                     : GGATATGACATAATAGGGTGTGTAACAGATCAGAGAGAAATAATGAAGAAA----GATATAAAATAAAGGCAATTAACGTTTTA--TTTACTTAATATACATGTTCGAACACATTTTAATACAAGCA-TGTCTTAAAACAATGTCTAC------AT-----TTAAATAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGACAGAAGCAGAGTAGACACAAC---TGCTTTGGAAGCTG-TTGTTAGTGTCTGTTTA-T-ATTAACATTGACATGTAGTCATATAGTGGGAGTAAT-TCATTTTCCAGATTGTCAAGTGCAGTC---------------CTG---TAAA----T--------ATATACT-TA---ACGG-------ATGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGATC-TTTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109243                     : GGATATGACATAATAGGGGGTGTTG-AGATCACAGAGAAATAATGAAAAAA----GATG--AAATAAAGGCAATTAACGTTTTACATTTACTTTATATACATGTTCGAACTCATCTTATTACAAGTA-TGTCTTAAA-CAATGTCTAC------AT-----TTAAATAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGACAGAAGCTGAGTAGACCCAAC---TGTTTCGGAAGCTGTTTGTTAGTGTCTG-TTA-ATATTAACATTGACATGTAGTCATATAGTGGGAGTAAT-ACATTTTCAAGATTGTCAACTG
gi|109244                     :     ATGACGTAAGATGGGA-GTTACAGATTGCAGGGAAGTAATGAAAAAA----TATATAAAAT---------TAATGTTTTA--TTGATCTAATATGCATGTTCGAAATCATTTTATTACACGCA-TGACCCAAAACAATGTCTACTTTTAGATAAAGCTTAAATAAAGCTTATGTTTTACTTAACATATC-----TGTTGT----ACAGAAGTGAAGCAAATCCA-------TTTTGGAAACAAATTGTTAGTATCAG--TA-A-A
gi|109245                     :                      GTAACAGATCACAGAGAAATAGTGAAAAGC----CATATAAA-TAA-GGCAATTAACGTTTTA--TTTACGCAATATACGTGTTTGAAATCATCTTATTACAAGTA-TATCTCAAACCAATGTTCAC------AT-----TTAAATAAATCTGATATTGTACTTGACATATC-----TGTTGCACAGACAGAAGTGAAGCAGACCCAACTGTTGTTTCGGAGGCAGTTTGTTAGTGTATG-TTA-ATATTAATATTGACATGTAACCATATAGTGGAAGTCAT-ATATTTTCCAGAATGTCAAGTGCAGTCCGGAAAAGGGCA---CTG---CAAG----A--------ATAAACC-TT---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACGATATTTC---TTA-C-ATTCTGATGACGTGTCT-CTGTCATCATATTTTcat
gi|109246                     :                             ATCGCAGACAA-TAATGATATGC----CTTATAAAATAAAGACA------GTTTCA--TTTATTCAATATGCATGTTAAAA-TCATTTTATTACATGTA-TTTCTTAAAACAATATTT-T------AT-----TTTAGTAAAGCTTATAGTTTGCTTTACATATT-----TGTTGGATAGACTGAAGTGACGCAGACCCAAT---TG-TTCGGAAG-TGA
gi|109247                     :                                                                                                                                                                                          TACATATCTAGATAGTTGTATAGGCGGATGTGAAGCAGACCAAAT---TATTTCGGAAGCAGATTGTTAGTGTCTG-TTACA-ATTAACATTGAAATTAAGCCATTTATTGGGAGAAAT-ACCTGCACCTGATTGTCAAGTGCAGT----------------CTGGAATAAA----A--------ATATATTGTTAAAACAGACATGACATATAC-AA----ATTTAA---------TGGGACCATATTCC---TGA-C-TTTTTGATGACGTATCTACTTCTCTCATATTTT
gi|109248                     :                                                                                                                                                                                                                                                GGAAACAGATTGTTAGTATTCG-TTA-ATATTAACATTGACATGAAGCCTTAAATTGGGAGTAAT-ACATGTTCCAGATTGTCAAGTGCAGTC---------------CGG---AAAAAGGCTCTGGAGGAATATACT-TC---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACCATATTTCTTATGA-C------------GTGTCT-CTGTCATCATGTTTTC
gi|109249                     :                                                                                                                                                                                                                                                                                        CATGCAGCCATATACTTGGAGTATTTACATGTTCCAGAGTGTCACGTGCAGTCCGGGAAAAAAAGGCTCTG---CAAG----A--------AGACACT-TC---ACAG-------GTGCACACATGCCATATACAAATAGAAGGGAGACCATATTTC---TGA-C-TTTTTGATTACGCGTCT-CTTTCACCATGTTTCC
gi|109250                     :                                                                                                                                                                                                                                                                                                                                                           tgTG---CAAA----T--------ATATACT-TT---ACAG-------GTGAAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-TTGTCATCATTTTTTC
gi|109251                     :                                                                                                                                                                                                                                                                                                                                                             TG---CAAA----T--------ATGTACT-TT---ACTG-------GTGTAC-CA----ATTGAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCATTTTTTC


blockSeqs                     :                                                    AAAC    T                        CA                                         G                    TTTTAG  AAAGC                                TAGAT                  A             TGT                         CTGTTAATATTAACATTGAC                          T                           CGGGAAAAAAAGGCT   GAA    AGGCTCTGGAGGA       G  AAA    ACATGAC      A  TGCC      AAATAGAAG              TTA   T A     GATGA       A
blockSeqs                     :                                                    .       A                        .                                          .                    .       .                                    .                      A             .                           CTGTTTATATTAACATTGAC                          .                           CGGAAAAGGGCA      .      T                   .  .      .            .  .         .                      .     . .     GATGA       .
blockSeqs                     :                                                    .       T                        .                                          .                    .       .                                    .                      A             .                           CTGTTAATATTAACATTGAC                          .                           .                 .      T                   .  .      .            .  .         .                      .     . .     GATTA       .
blockSeqs                     :                                                    .       T                        .                                          .                    .       .                                    .                      A             .                           ATGTTAATATTAATATTGAC                          .                           .                 .      T                   .  .      .            .  .         .                      .     . .     .           .
blockSeqs                     :                                                    .       T                        .                                          .                    .       .                                    .                      A             .                           CTGTTACAATTAACATTGAA                          .                           .                 .      T                   .  .      .            .  .         .                      .     . .     .           .
blockSeqs                     :                                                    .       T                        .                                          .                    .       .                                    .                      A             .                           TCGTTAATATTAACATTGAC                          .                           .                 .      T                   .  .      .            .  .         .                      .     . .     .           .
blockSeqs                     :                                                    .       T                        .                                          .                    .       .                                    .                      A             .                           .                                             .                           .                 .      T                   .  .      .            .  .         .                      .     . .     .           .
blockSeqs                     :                                                    .       T                        .                                          .                    .       .                                    .                      T             .                           .                                             .                           .                 .      T                   .  .      .            .  .         .                      .     . .     .           .
blockSeqs                     :                                                    .       T                        .                                          .                    .       .                                    .                      G             .                           .                                             .                           .                 .      A                   .  .      .            .  .         .                      .     . .     .           .
blockSeqs                     :                                                    .       .                        .                                          .                    .       .                                    .                      G             .                           .                                             .                           .                 .      A                   .  .      .            .  .         .                      .     . .     .           .
blockSeqs                     :                                                    .       .                        .                                          .                    .       .                                    .                      G             .                           .                                             .                           .                 .      A                   .  .      .            .  .         .                      .     . .     .           .
blockSeqs                     :                                                                                                                                                                                                  .                      G             .                                                                         .                                             .      T                   .  .      .            .  .         .                      .     . .     .           .
blockSeqs                     :                                                                                                                                                                                                                                                                                                                                                               .      T                   .  .      .            .  .         .                      .     . .     .           .


blockSeqCons                  :                                                                                                                                                                                                                                                                   CTGTTAATATTAACATTGAC**
originalCons                  : GGATATGACATAATAGGGGGTGTAACAGATCACAGAGAAATAATGAAAAAA----CATATAAAATAAAGGCAATTAACGTTTTA--TTTACTCAATATACATGTTCGAACTCATCTTATTACAAGTA-TGTCTCAAAACAATGTCTAC------AT-----TTAAATAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGACAGAAGCGGAGTAGACCCAAC---TGTTTCGGAAGCTGATTGTTAGTGTCTG-TTA-A-ATTAACATTGACATGTAGTCATATAGTGGGAGTAAT-ACATTTTCCAGATTGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCATGTTTTC
finalCons                     : GGATATGACATAATAGGGGGTGTAACAGATCACAGAGAAATAATGAAAAAA----CATATAAAATAAAGGCAATTAACGTTTTA--TTTACTCAATATACATGTTCGAACTCATCTTATTACAAGTA-TGTCTCAAAACAATGTCTAC------AT-----TTAAATAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGACAGAAGCGGAGTAGACCCAAC---TGTTTCGGAAGCTGATTGTTAGTGTCTGTTAATATTAACATTGAC--ATGTAGTCATATAGTGGGAGTAAT-ACATTTTCCAGATTGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCATGTTTTC





Alignments
lowQualScore                  :                                                                                                                                                                                                                                                                   77777777777777777777                                                    333333333333333          1111111111111                                           111111111                            22222                        
lowQualScore                  :                                                    7777    1                        44                                         3                    999999  88888                                77777                  1             555                         77777777777777777777                        3                           777777777777777   555    3333333333333       2  555    9999999      2  6666      111111111              555   2 2     11111       2                
lowQualScore                  :                                                    ....    .                        ..                                         .                    ......  .....                                .....                  .             ...                         ....................                        .                           ...............   ...    .............       .  ...    .......      .  ....      .........              ...   . .     .....       .                
lowQualScore                  :                                                    1111    3                        66                                         3                    666666  33333                                77777                  8             444                         33333333333333333333                        1                           999999999999999   000    0000000000000       9  000    3333333      9  1111      444444444              000   9 9     44444       9                
consensus                     : GGATATGACATAATAGGGGGTGTAACAGATCACAGAGAAATAATGAAAAAA----CATATAAAATAAAGGCAATTAACGTTTTA--TTTACTCAATATACATGTTCGAACTCATCTTATTACAAGTA-TGTCTCAAAACAATGTCTAC------AT-----TTAAATAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGACAGAAGCGGAGTAGACCCAAC---TGTTTCGGAAGCTGATTGTTAGTGTCTGTTAATATTAACATTGACATGTAGTCATATAGTGGGAGTAAT-ACATTTTCCAGATTGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCATGTTTTC
Reference ( family-900 )      : GGATATGACATAATAGGGGGTGTAACAGATCACAGAGAAATAATGAAAAAA----CATATAAAATAAAGGCAATTAACGTTTTA--TTTACTCAATATACATGTTCGAACTCATCTTATTACAAGTA-TGTCTCAAAACAATGTCTAC------AT-----TTAAATAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGACAGAAGCGGAGTAGACCCAAC---TGTTTCGGAAGCTGATTGTTAGTGTCTGTTAATATTAACATTGACATGTAGTCATATAGTGGGAGTAAT-ACATTTTCCAGATTGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109235                     : GGATATGACATAATAGGGGGCGTAACAGATCACAGAGAAATAATGAAAAAA----GATATAAAATAAAGGCAATTAATGTTTTA--TTTACTTAATATACATGTTCAAACTCATCTTGTTACAAGTA-TATCTTAAAACAATGTCTAC------AT-----TTAAACAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGACAAAAGCAGTGTAGACCCAAC---TGTTTTGGAAGCTGATTGTTAGTGT--------------------ATGTAGTCATATAGTGGAAGTAAT-ACATTATCCAGATGGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109236                     : GAATATGACATAATAGGGGGTGTAACAGATCACAGAGAAATAATGAAAAAA----GTTATAAAATAAAAGCAATTAATGTTTTA--TTTACTTAATATACATGTTCAAACTCATCTTGTTACAAGTA-TGTCTTAAAACAATGTCTAC------GT-----TTAAATAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGACAGAAGCAGAGTAGACCCAAC---TGTTTTGGAAGCTGATTGTTAGTGTCTGTTAATATTAACATTGACATGTAGTCATATAGTGGGAGTAAT-ACATTATCCATATTGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109237                     : GGATATGACATAATAGGGGGTGTAACAGGTCACAGAGAAATAATGAAAAA-----CATAAAAAATAAAGGCAATTTACGTTTTA--TTTACTCAATATACATGTTCGAACTCATCTTATTACAAGTA-TGTCTCAAAACAATGTCTAC------AT-----TTAAATAAAGTTTATAATTTACTTTACATATC-----AGTTGTACAGACAGACGCAGAGTAGACCCAAC---TGTTTCGGAAGCTGATTGTTAGTGT--------------------ATGTAGTCATATAGTGGGAGTAAT-ACATTTTCCAGATTGTCAAGTGCAGTT---------------CTG---CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-TA----ATTTAC---------GGGGACTATATTTC---TGA-C-TGTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109238                     : GGATATGACATAATAGGGGGTGCGACAGATCACAGAGAAATAATGAAAAAA----CATATAAAATAAAGGCAATTAACGTTTTA--TTTACTCATTATACATGTTCGAACTC---TTATTACAAGTA-TGTCTCAAAACAATGTCTAC------AT-----TTAAATAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGAGAGAAGCAGAGTAGACCCAAC---TGTTTCGGAAGCTGATTGTTAGTGT--------------------ATGTAATCATATAGTGGGAGTAAT-ACATTTTCCAGATTGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TT---ACAA-------GTGTAC-CA----ATTTAT----------GGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCAT-TTTTC
gi|109239                     : GGATATGACGTAATAGGGGATGTAACAGATCACAGAGAAATAATGGAAAAAAAACCATATAAAATAAAGGCAATTAACGTTTTA--TTTACTCATTATACATGTTCGAACTCATCTTATTACAAGTA-TGTCTCAAAACAATGTCTAC------AT-----TTAAATAAAGCTGATAATTTACTTTACATATC-----AGTTGTACAGACAGAAGCAGAGTAGACCCAAC---TGTTTCGGAAGCTAATTGTTAGTGT--------------------ATGTAGTAATATAGTGGAAGTAAT-ACATTTTCCAGATTGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TA---ACAG-------TTGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-CATTTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109240                     : GGATACAACATAATAGGCGGTGTAACAGATCACAGAGAAATAATGAAAAAA----CATA--AAATAAAGGCAATTAACGTTTTA--TTTACTCATTATACATGTTCGAACTCATCTTATTACAAGTA-TGTCTCAAAACAATGTCTAC------AT-----TTAAATAAAGCTTATAATTTACTTTGCATATC-----AGTTGTACAGATAGAAGTAGAGCAGACCCAAC---TGTTTCGGAAGCTGATTGTTAGTGT--------------------ATGTAGTCATATAGTGGGAGTAAT-ACATTTTCCAGATTGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-CA----GTTTAT----------GGGACTATATTTC---TGA-C-ATTTT-----TGTGTCT-CTGTCATTATGTTTT
gi|109241                     : GGATATGACATAATAGGGGGTGTAACAGATCACAGAGAAATAATGAAAA-A----CATATAAAATAAAGGCAATTAACATTTTA--TTTACTCAATATACATGTTCGAACTCATCTTATTACAA-TAGTGTCTCAAAACAATGTATAC------AT-----TTAAATAAAGCTTATAATTTACATTACATATA-----AGTTGTACAGACAGAAGCAGAGTAGACCCAAC---TGTTTCGGAAGCTGATTGTTGGTGT--------------------ATGTAGTCATATAGTGGGAGTAAT-ACATTTTCCAGATTGT--------------------------------CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109242                     : GGATATGACATAATAGGGTGTGTAACAGATCAGAGAGAAATAATGAAGAAA----GATATAAAATAAAGGCAATTAACGTTTTA--TTTACTTAATATACATGTTCGAACACATTTTAATACAAGCA-TGTCTTAAAACAATGTCTAC------AT-----TTAAATAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGACAGAAGCAGAGTAGACACAAC---TGCTTTGGAAGCTG-TTGTTAGTGTCTGTTTATATTAACATTGACATGTAGTCATATAGTGGGAGTAAT-TCATTTTCCAGATTGTCAAGTGCAGTC---------------CTG---TAAA----T--------ATATACT-TA---ACGG-------ATGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGATC-TTTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109243                     : GGATATGACATAATAGGGGGTGTTG-AGATCACAGAGAAATAATGAAAAAA----GATG--AAATAAAGGCAATTAACGTTTTACATTTACTTTATATACATGTTCGAACTCATCTTATTACAAGTA-TGTCTTAAA-CAATGTCTAC------AT-----TTAAATAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGACAGAAGCTGAGTAGACCCAAC---TGTTTCGGAAGCTGTTTGTTAGTGTCTGTTAATATTAACATTGACATGTAGTCATATAGTGGGAGTAAT-ACATTTTCAAGATTGTCAACTG
gi|109244                     :     ATGACGTAAGATGGGA-GTTACAGATTGCAGGGAAGTAATGAAAAAA----TATATAAAAT---------TAATGTTTTA--TTGATCTAATATGCATGTTCGAAATCATTTTATTACACGCA-TGACCCAAAACAATGTCTACTTTTAGATAAAGCTTAAATAAAGCTTATGTTTTACTTAACATATC-----TGTTGT----ACAGAAGTGAAGCAAATCCA-------TTTTGGAAACAAATTGTTAGTATCAGTAAACAT
gi|109245                     :                      GTAACAGATCACAGAGAAATAGTGAAAAGC----CATATAAA-TAA-GGCAATTAACGTTTTA--TTTACGCAATATACGTGTTTGAAATCATCTTATTACAAGTA-TATCTCAAACCAATGTTCAC------AT-----TTAAATAAATCTGATATTGTACTTGACATATC-----TGTTGCACAGACAGAAGTGAAGCAGACCCAACTGTTGTTTCGGAGGCAGTTTGTTAGTGTATGTTAATATTAATATTGACATGTAACCATATAGTGGAAGTCAT-ATATTTTCCAGAATGTCAAGTGCAGTCCGGAAAAGGGCA---CTG---CAAG----A--------ATAAACC-TT---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACGATATTTC---TTA-C-ATTCTGATGACGTGTCT-CTGTCATCATATTTT
gi|109246                     :                             ATCGCAGACAA-TAATGATATGC----CTTATAAAATAAAGACA------GTTTCA--TTTATTCAATATGCATGTTAAAA-TCATTTTATTACATGTA-TTTCTTAAAACAATATTT-T------AT-----TTTAGTAAAGCTTATAGTTTGCTTTACATATT-----TGTTGGATAGACTGAAGTGACGCAGACCCAAT---TG-TTCGGAAG-TGA
gi|109247                     :                                                                                                                                                                                          TACATATCTAGATAGTTGTATAGGCGGATGTGAAGCAGACCAAAT---TATTTCGGAAGCAGATTGTTAGTGTCTGTTACAATTAACATTGAAATTAAGCCATTTATTGGGAGAAAT-ACCTGCACCTGATTGTCAAGTGCAGT----------------CTGGAATAAA----A--------ATATATTGTTAAAACAGACATGACATATAC-AA----ATTTAA---------TGGGACCATATTCC---TGA-C-TTTTTGATGACGTATCTACTTCTCTCATATTTT
gi|109248                     :                                                                                                                                                                                                                                                GGAAACAGATTGTTAGTATTCGTTAATATTAACATTGACATGAAGCCTTAAATTGGGAGTAAT-ACATGTTCCAGATTGTCAAGTGCAGTC---------------CGG---AAAAAGGCTCTGGAGGAATATACT-TC---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACCATATTTCTTATGA-C------------GTGTCT-CTGTCATCATGTTTTC
gi|109249                     :                                                                                                                                                                                                                                                                                      CATGCAGCCATATACTTGGAGTATTTACATGTTCCAGAGTGTCACGTGCAGTCCGGGAAAAAAAGGCTCTG---CAAG----A--------AGACACT-TC---ACAG-------GTGCACACATGCCATATACAAATAGAAGGGAGACCATATTTC---TGA-C-TTTTTGATTACGCGTCT-CTTTCACCATGTTTCC
gi|109250                     :                                                                                                                                                                                                                                                                                                                                                         tgTG---CAAA----T--------ATATACT-TT---ACAG-------GTGAAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-TTGTCATCATTTTTTC
gi|109251                     :                                                                                                                                                                                                                                                                                                                                                           TG---CAAA----T--------ATGTACT-TT---ACTG-------GTGTAC-CA----ATTGAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCATTTTTTC