lowQualScore : 22222 222222222222 99999999999999999999 1 1 3333333333333333333333333333 1111111111111 1111111 111111111 22222
lowQualScore : 6 55 55555 3 7 4 55 0 3 4 3 0 111111111111 88888 555 2 33333333333333333333 3 3 2 7 0000000000000000000000000000 555 4444444444444 3 555 0000000 3 6666 222222222 555 3 3 33333 3 0
lowQualScore : . .. ..... . . . .. . . . . . ............ ..... ... . .................... . . . . ............................ ... ............. . ... ....... . .... ......... ... . . ..... . .
lowQualScore : 0 00 44444 6 7 1 00 5 3 5 6 5 888888888888 33333 888 2 99999999999999999999 3 3 7 1 1111111111111111111111111111 444 7777777777777 1 444 0000000 1 5555 333333333 444 1 1 11111 1 2
consensus : GGATATGACATAATAGGGGGTGTAACAGATCACAGAGAAATAATG--AAAAAAGN--TATA-AAATAAAGGCAATTAACGTTTTA--TTTACTCAATATACATGTTCGAACTCATCTTATTACAAGTA-TGTCTCAAAACAATGTCTAC-----------ATTTAAATAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGACAGAAGCGGAGTAGACCCAAC---TGTTTCGGAAGCTGATTGTTAGTGTCTGTTAA-ATTAACATTGACATGTAGTCATATAGTGGGAGTAAT-ACAT-TTTCCAGATTGTCAAGTGCAGTC------------C---------------TG---CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCATGTTTTC
Reference ( gi|109236 ) : GAATATGACATAATAGGGGGTGTAACAGATCACAGAGAAATAATG--AAAAAAGT--TATA-AAATAAAAGCAATTAATGTTTTA--TTTACTTAATATACATGTTCAAACTCATCTTGTTACAAGTA-TGTCTTAAAACAATGTCTAC-----------GTTTAAATAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGACAGAAGCAGAGTAGACCCAAC---TGTTTTGGAAGCTGATTGTTAGTGTCTGTTAATATTAACATTGACATGTAGTCATATAGTGGGAGTAAT-ACAT-TATCCATATTGTCAAGTGCAGTC------------C---------------TG---CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109235 : GGATATGACATAATAGGGGGCGTAACAGATCACAGAGAAATAATG--AAAAAAGA--TATA-AAATAAAGGCAATTAATGTTTTA--TTTACTTAATATACATGTTCAAACTCATCTTGTTACAAGTA-TATCTTAAAACAATGTCTAC-----------ATTTAAACAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGACAAAAGCAGTGTAGACCCAAC---TGTTTTGGAAGCTGATTGTTAGTGT--------------------ATGTAGTCATATAGTGGAAGTAAT-ACAT-TATCCAGATGGTCAAGTGCAGTC------------C---------------TG---CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109242 : GGATATGACATAATAGGGTGTGTAACAGATCAGAGAGAAATAATG--AAGAAAGA--TATA-AAATAAAGGCAATTAACGTTTTA--TTTACTTAATATACATGTTCGAACACATTTTAATACAAGCA-TGTCTTAAAACAATGTCTAC-----------ATTTAAATAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGACAGAAGCAGAGTAGACACAAC---TGCTTTGGAAGCTG-TTGTTAGTGTCTGTTTATATTAACATTGACATGTAGTCATATAGTGGGAGTAAT-TCAT-TTTCCAGATTGTCAAGTGCAGTC------------C---------------TG---TAAA----T--------ATATACT-TA---ACGG-------ATGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGATC-TTTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109237 : GGATATGACATAATAGGGGGTGTAACAGGTCACAGAGAAATAATG--AAAAACAT--AA-A-AAATAAAGGCAATTTACGTTTTA--TTTACTCAATATACATGTTCGAACTCATCTTATTACAAGTA-TGTCTCAAAACAATGTCTAC-----------ATTTAAATAAAGTTTATAATTTACTTTACATATC-----AGTTGTACAGACAGACGCAGAGTAGACCCAAC---TGTTTCGGAAGCTGATTGTTAGTGT--------------------ATGTAGTCATATAGTGGGAGTAAT-ACAT-TTTCCAGATTGTCAAGTGCAGTT------------C---------------TG---CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-TA----ATTTAC---------GGGGACTATATTTC---TGA-C-TGTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109238 : GGATATGACATAATAGGGGGTGCGACAGATCACAGAGAAATAATG--AAAAAACA--TATA-AAATAAAGGCAATTAACGTTTTA--TTTACTCATTATACATGTTCGAACTC---TTATTACAAGTA-TGTCTCAAAACAATGTCTAC-----------ATTTAAATAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGAGAGAAGCAGAGTAGACCCAAC---TGTTTCGGAAGCTGATTGTTAGTGT--------------------ATGTAATCATATAGTGGGAGTAAT-ACAT-TTTCCAGATTGTCAAGTGCAGTC------------C---------------TG---CAAA----T--------ATATACT-TT---ACAA-------GTGTAC-CA----ATTTAT----------GGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCAT-TTTTC
gi|109240 : GGATACAACATAATAGGCGGTGTAACAGATCACAGAGAAATAATG--AAAAAA----CATA-AAATAAAGGCAATTAACGTTTTA--TTTACTCATTATACATGTTCGAACTCATCTTATTACAAGTA-TGTCTCAAAACAATGTCTAC-----------ATTTAAATAAAGCTTATAATTTACTTTGCATATC-----AGTTGTACAGATAGAAGTAGAGCAGACCCAAC---TGTTTCGGAAGCTGATTGTTAGTGT--------------------ATGTAGTCATATAGTGGGAGTAAT-ACAT-TTTCCAGATTGTCAAGTGCAGTC------------C---------------TG---CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-CA----GTTTAT----------GGGACTATATTTC---TGA-C-ATTTT-----TGTGTCT-CTGTCATTATGTTTT
gi|109239 : GGATATGACGTAATAGGGGATGTAACAGATCACAGAGAAATAATGGAAAAAAAACCATATA-AAATAAAGGCAATTAACGTTTTA--TTTACTCATTATACATGTTCGAACTCATCTTATTACAAGTA-TGTCTCAAAACAATGTCTAC-----------ATTTAAATAAAGCTGATAATTTACTTTACATATC-----AGTTGTACAGACAGAAGCAGAGTAGACCCAAC---TGTTTCGGAAGCTAATTGTTAGTGTATGT--------------------AGTAATATAGTGGAAGTAAT-ACAT-TTTCCAGATTGTCAAGTGCAGTC------------C---------------TG---CAAA----T--------ATATACT-TA---ACAG-------TTGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-CATTTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109241 : GGATATGACATAATAGGGGGTGTAACAGATCACAGAGAAATAATG--AAAAACAT---ATA-AAATAAAGGCAATTAACATTTTA--TTTACTCAATATACATGTTCGAACTCATCTTATTACAA-TAGTGTCTCAAAACAATGTATAC-----------ATTTAAATAAAGCTTATAATTTACATTACATATA-----AGTTGTACAGACAGAAGCAGAGTAGACCCAAC---TGTTTCGGAAGCTGATTGTTGGTGT--------------------ATGTAGTCATATAGTGGGAGTAAT-ACAT-TTTCCAGATTGT--------------------------------------------CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109243 : GGATATGACATAATAGGGGGTGTTG-AGATCACAGAGAAATAATG--AAAAAAG----ATG-AAATAAAGGCAATTAACGTTTTACATTTACTTTATATACATGTTCGAACTCATCTTATTACAAGTA-TGTCTTAAA-CAATGTCTAC-----------ATTTAAATAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGACAGAAGCTGAGTAGACCCAAC---TGTTTCGGAAGCTGTTTGTTAGTGTCTGTTAATATTAACATTGACATGTAGTCATATAGTGGGAGTAAT-ACAT-TTTCAAGATTGTCAACTG
gi|109244 : ATGACGTAAGATGGGA-GTTACAGATTGCAGGGAAGTAATG--AAAAAA----TATA----TAAAA----TTAATGTTTTA--TTGATCTAATATGCATGTTCGAAATCATTTTATTACACGCA-TGACCCAAAACAATGTCTACTTTTAGATAAAGCTTAAATAAAGCTTATGTTTTACTTAACATATC-----TGTTGT----ACAGAAGTGAAGCAAATCCA-------TTTTGGAAACAAATTGTTAGTATCAGTAAACAT
gi|109245 : GTAACAGATCACAGAGAAATAGTG--AAAA--GC--CATATAAATAAG-GCAATTAACGTTTTA--TTTACGCAATATACGTGTTTGAAATCATCTTATTACAAGTA-TATCTCAAACCAATGTTCAC-----------ATTTAAATAAATCTGATATTGTACTTGACATATC-----TGTTGCACAGACAGAAGTGAAGCAGACCCAACTGTTGTTTCGGAGGCAGTTTGTTAGTGTATGTTAATATTAATATTGACATGTAACCATATAGTGGAAGTCAT-ATAT-TTTCCAGAATGTCAAGTGCAGTCCGGAAAAGGGCAC---------------TG---CAAG----A--------ATAAACC-TT---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACGATATTTC---TTA-C-ATTCTGATGACGTGTCT-CTGTCATCATATTTT
gi|109246 : ATCGCAGACAA-TAATG--ATATGCCT--TATA-AAATAAAGACA------GTTTCA--TTTATTCAATATGCATGTTAAAA-TCATTTTATTACATGTA-TTTCTTAAAACAATATTT-T-----------ATTTTAGTAAAGCTTATAGTTTGCTTTACATATT-----TGTTGGATAGACTGAAGTGACGCAGACCCAAT---TG-TTCGGAAG-TGA
gi|109247 : TACATATCTAGATAGTTGTATAGGCGGATGTGAAGCAGACCAAAT---TATTTCGGAAGCAGATTGTTAGTGTCTGTTACAATTAACATTGAAATTAAGCCATTTATTGGGAGAAAT-ACCTGCACCTG-ATTGTCAAGTGCAGT-------------C---------------TGGAATAAA----A--------ATATATTGTTAAAACAGACATGACATATAC-AA----ATTTAA---------TGGGACCATATTCC---TGA-C-TTTTTGATGACGTATCTACTTCTCTCATATTTT
gi|109248 : GGAAACAGATTGTTAGTATTCGTTAATATTAACATTGACATGAAGCCTTAAATTGGGAGTAAT-ACAT-GTTCCAGATTGTCAAGTGCAGTC------------C---------------GG---AAAAAGGCTCTGGAGGAATATACT-TC---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACCATATTTCTTATGA-C------------GTGTCT-CTGTCATCATGTTTTC
gi|109249 : CATGCAGCCATATACTTGGAGTATTTACAT-GTTCCAGAGTGTCACGTGCAGTC------------CGGGAAAAAAAGGCTCTG---CAAG----A--------AGACACT-TC---ACAG-------GTGCACACATGCCATATACAAATAGAAGGGAGACCATATTTC---TGA-C-TTTTTGATTACGCGTCT-CTTTCACCATGTTTCC
gi|109250 : tg---------------TG---CAAA----T--------ATATACT-TT---ACAG-------GTGAAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-TTGTCATCATTTTTTC
gi|109251 : ---------------TG---CAAA----T--------ATGTACT-TT---ACTG-------GTGTAC-CA----ATTGAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCATTTTTTC
Alignments
lowQualScore : 222222 9999999999999999999999 333333333333333 1111111111111 111111111 22222
lowQualScore : 222222 3 44 3 999999 88888 77777 1 555 1111111111111111111111 3 777777777777777 555 3333333333333 2 555 9999999 2 6666 111111111 555 2 2 11111 2
lowQualScore : ...... . .. . ...... ..... ..... . ... ...................... . ............... ... ............. . ... ....... . .... ......... ... . . ..... .
lowQualScore : 666666 3 66 3 666666 33333 77777 8 444 4444444444444444444444 1 999999999999999 000 0000000000000 9 000 3333333 9 1111 444444444 000 9 9 44444 9
consensus : GGATATGACATAATAGGGGGTGTAACAGATCACAGAGAAATAATGAAAAAAGA----TATA-AAATAAAGGCAATTAACGTTTTA--TTTACTCAATATACATGTTCGAACTCATCTTATTACAAGTA-TGTCTCAAAACAATGTCTAC------AT-----TTAAATAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGACAGAAGCGGAGTAGACCCAAC---TGTTTCGGAAGCTGATTGTTAGTGTCTG-TTA-A-ATTAACATTGACATGTAGTCATATAGTGGGAGTAAT-ACATTTTCCAGATTGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCATGTTTTC
Reference ( family-900 ) : GGATATGACATAATAGGGGGTGTAACAGATCACAGAGAAATAATGAAAAAAGN----TATA-AAATAAAGGCAATTAACGTTTTA--TTTACTCAATATACATGTTCGAACTCATCTTATTACAAGTA-TGTCTCAAAACAATGTCTAC------AT-----TTAAATAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGACAGAAGCGGAGTAGACCCAAC---TGTTTCGGAAGCTGATTGTTAGTGTCTG-TTA-A-ATTAACATTGACATGTAGTCATATAGTGGGAGTAAT-ACATTTTCCAGATTGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109235 : GGATATGACATAATAGGGGGCGTAACAGATCACAGAGAAATAATGAAAAAAGA----TATA-AAATAAAGGCAATTAATGTTTTA--TTTACTTAATATACATGTTCAAACTCATCTTGTTACAAGTA-TATCTTAAAACAATGTCTAC------AT-----TTAAACAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGACAAAAGCAGTGTAGACCCAAC---TGTTTTGGAAGCTGATTGTTAGTGT----------------------ATGTAGTCATATAGTGGAAGTAAT-ACATTATCCAGATGGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109236 : GAATATGACATAATAGGGGGTGTAACAGATCACAGAGAAATAATGAAAAAAGT----TATA-AAATAAAAGCAATTAATGTTTTA--TTTACTTAATATACATGTTCAAACTCATCTTGTTACAAGTA-TGTCTTAAAACAATGTCTAC------GT-----TTAAATAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGACAGAAGCAGAGTAGACCCAAC---TGTTTTGGAAGCTGATTGTTAGTGTCTG-TTA-ATATTAACATTGACATGTAGTCATATAGTGGGAGTAAT-ACATTATCCATATTGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109237 : GGATATGACATAATAGGGGGTGTAACAGGTCACAGAGAAATAATGAAAAAC-A----TAAA-AAATAAAGGCAATTTACGTTTTA--TTTACTCAATATACATGTTCGAACTCATCTTATTACAAGTA-TGTCTCAAAACAATGTCTAC------AT-----TTAAATAAAGTTTATAATTTACTTTACATATC-----AGTTGTACAGACAGACGCAGAGTAGACCCAAC---TGTTTCGGAAGCTGATTGTTAGTGT----------------------ATGTAGTCATATAGTGGGAGTAAT-ACATTTTCCAGATTGTCAAGTGCAGTT---------------CTG---CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-TA----ATTTAC---------GGGGACTATATTTC---TGA-C-TGTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109238 : GGATATGACATAATAGGGGGTGCGACAGATCACAGAGAAATAATGAAAAAACA----TATA-AAATAAAGGCAATTAACGTTTTA--TTTACTCATTATACATGTTCGAACTC---TTATTACAAGTA-TGTCTCAAAACAATGTCTAC------AT-----TTAAATAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGAGAGAAGCAGAGTAGACCCAAC---TGTTTCGGAAGCTGATTGTTAGTGT----------------------ATGTAATCATATAGTGGGAGTAAT-ACATTTTCCAGATTGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TT---ACAA-------GTGTAC-CA----ATTTAT----------GGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCAT-TTTTC
gi|109239 : GGATATGACGTAATAGGGGATGTAACAGATCACAGAGAAATAATGGAAAAAAAACCATATA-AAATAAAGGCAATTAACGTTTTA--TTTACTCATTATACATGTTCGAACTCATCTTATTACAAGTA-TGTCTCAAAACAATGTCTAC------AT-----TTAAATAAAGCTGATAATTTACTTTACATATC-----AGTTGTACAGACAGAAGCAGAGTAGACCCAAC---TGTTTCGGAAGCTAATTGTTAGTGT----------------------ATGTAGTAATATAGTGGAAGTAAT-ACATTTTCCAGATTGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TA---ACAG-------TTGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-CATTTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109240 : GGATACAACATAATAGGCGGTGTAACAGATCACAGAGAAATAATGAAAAAA------CATA-AAATAAAGGCAATTAACGTTTTA--TTTACTCATTATACATGTTCGAACTCATCTTATTACAAGTA-TGTCTCAAAACAATGTCTAC------AT-----TTAAATAAAGCTTATAATTTACTTTGCATATC-----AGTTGTACAGATAGAAGTAGAGCAGACCCAAC---TGTTTCGGAAGCTGATTGTTAGTGT----------------------ATGTAGTCATATAGTGGGAGTAAT-ACATTTTCCAGATTGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-CA----GTTTAT----------GGGACTATATTTC---TGA-C-ATTTT-----TGTGTCT-CTGTCATTATGTTTT
gi|109241 : GGATATGACATAATAGGGGGTGTAACAGATCACAGAGAAATAATGAAAAAC-A----TATA-AAATAAAGGCAATTAACATTTTA--TTTACTCAATATACATGTTCGAACTCATCTTATTACAA-TAGTGTCTCAAAACAATGTATAC------AT-----TTAAATAAAGCTTATAATTTACATTACATATA-----AGTTGTACAGACAGAAGCAGAGTAGACCCAAC---TGTTTCGGAAGCTGATTGTTGGTGT----------------------ATGTAGTCATATAGTGGGAGTAAT-ACATTTTCCAGATTGT--------------------------------CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109242 : GGATATGACATAATAGGGTGTGTAACAGATCAGAGAGAAATAATGAAGAAAGA----TATA-AAATAAAGGCAATTAACGTTTTA--TTTACTTAATATACATGTTCGAACACATTTTAATACAAGCA-TGTCTTAAAACAATGTCTAC------AT-----TTAAATAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGACAGAAGCAGAGTAGACACAAC---TGCTTTGGAAGCTG-TTGTTAGTGTCTGTTTA-T-ATTAACATTGACATGTAGTCATATAGTGGGAGTAAT-TCATTTTCCAGATTGTCAAGTGCAGTC---------------CTG---TAAA----T--------ATATACT-TA---ACGG-------ATGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGATC-TTTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109243 : GGATATGACATAATAGGGGGTGTTG-AGATCACAGAGAAATAATGAAAAAAG------ATG-AAATAAAGGCAATTAACGTTTTACATTTACTTTATATACATGTTCGAACTCATCTTATTACAAGTA-TGTCTTAAA-CAATGTCTAC------AT-----TTAAATAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGACAGAAGCTGAGTAGACCCAAC---TGTTTCGGAAGCTGTTTGTTAGTGTCTG-TTA-ATATTAACATTGACATGTAGTCATATAGTGGGAGTAAT-ACATTTTCAAGATTGTCAACTG
gi|109244 : ATGACGTAAGATGGGA-GTTACAGATTGCAGGGAAGTAATGAAAAAATA----TATA-AAAT---------TAATGTTTTA--TTGATCTAATATGCATGTTCGAAATCATTTTATTACACGCA-TGACCCAAAACAATGTCTACTTTTAGATAAAGCTTAAATAAAGCTTATGTTTTACTTAACATATC-----TGTTGT----ACAGAAGTGAAGCAAATCCA-------TTTTGGAAACAAATTGTTAGTATCAG--TA-A-A
gi|109245 : GTAACAGATCACAGAGAAATAGTGAAAA--GC----CATATAAATAA-GGCAATTAACGTTTTA--TTTACGCAATATACGTGTTTGAAATCATCTTATTACAAGTA-TATCTCAAACCAATGTTCAC------AT-----TTAAATAAATCTGATATTGTACTTGACATATC-----TGTTGCACAGACAGAAGTGAAGCAGACCCAACTGTTGTTTCGGAGGCAGTTTGTTAGTGTATG-TTA-ATATTAATATTGACATGTAACCATATAGTGGAAGTCAT-ATATTTTCCAGAATGTCAAGTGCAGTCCGGAAAAGGGCA---CTG---CAAG----A--------ATAAACC-TT---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACGATATTTC---TTA-C-ATTCTGATGACGTGTCT-CTGTCATCATATTTTcat
gi|109246 : ATCGCAGACAA-TAATGATATGCCT----TATA-AAATAAAGACA------GTTTCA--TTTATTCAATATGCATGTTAAAA-TCATTTTATTACATGTA-TTTCTTAAAACAATATTT-T------AT-----TTTAGTAAAGCTTATAGTTTGCTTTACATATT-----TGTTGGATAGACTGAAGTGACGCAGACCCAAT---TG-TTCGGAAG-TGA
gi|109247 : TACATATCTAGATAGTTGTATAGGCGGATGTGAAGCAGACCAAAT---TATTTCGGAAGCAGATTGTTAGTGTCTG-TTACA-ATTAACATTGAAATTAAGCCATTTATTGGGAGAAAT-ACCTGCACCTGATTGTCAAGTGCAGT----------------CTGGAATAAA----A--------ATATATTGTTAAAACAGACATGACATATAC-AA----ATTTAA---------TGGGACCATATTCC---TGA-C-TTTTTGATGACGTATCTACTTCTCTCATATTTT
gi|109248 : GGAAACAGATTGTTAGTATTCG-TTA-ATATTAACATTGACATGAAGCCTTAAATTGGGAGTAAT-ACATGTTCCAGATTGTCAAGTGCAGTC---------------CGG---AAAAAGGCTCTGGAGGAATATACT-TC---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACCATATTTCTTATGA-C------------GTGTCT-CTGTCATCATGTTTTC
gi|109249 : CATGCAGCCATATACTTGGAGTATTTACATGTTCCAGAGTGTCACGTGCAGTCCGGGAAAAAAAGGCTCTG---CAAG----A--------AGACACT-TC---ACAG-------GTGCACACATGCCATATACAAATAGAAGGGAGACCATATTTC---TGA-C-TTTTTGATTACGCGTCT-CTTTCACCATGTTTCC
gi|109250 : tgTG---CAAA----T--------ATATACT-TT---ACAG-------GTGAAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-TTGTCATCATTTTTTC
gi|109251 : TG---CAAA----T--------ATGTACT-TT---ACTG-------GTGTAC-CA----ATTGAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCATTTTTTC
Alignments
lowQualScore : 111111 9999999999999999999999 333333333333333 1111111111111 111111111 22222
lowQualScore : 666666 44 3 999999 88888 77777 1 555 1111111111111111111111 3 777777777777777 555 3333333333333 2 555 9999999 2 6666 111111111 555 2 2 11111 2
lowQualScore : ...... .. . ...... ..... ..... . ... ...................... . ............... ... ............. . ... ....... . .... ......... ... . . ..... .
lowQualScore : 666666 66 3 666666 33333 77777 8 444 4444444444444444444444 1 999999999999999 000 0000000000000 9 000 3333333 9 1111 444444444 000 9 9 44444 9
consensus : GGATATGACATAATAGGGGGTGTAACAGATCACAGAGAAATAATGAAAAAANA----TATAAAATAAAGGCAATTAACGTTTTA--TTTACTCAATATACATGTTCGAACTCATCTTATTACAAGTA-TGTCTCAAAACAATGTCTAC------AT-----TTAAATAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGACAGAAGCGGAGTAGACCCAAC---TGTTTCGGAAGCTGATTGTTAGTGTCTG-TTA-A-ATTAACATTGACATGTAGTCATATAGTGGGAGTAAT-ACATTTTCCAGATTGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCATGTTTTC
Reference ( family-900 ) : GGATATGACATAATAGGGGGTGTAACAGATCACAGAGAAATAATGAAAAAAGA----TATAAAATAAAGGCAATTAACGTTTTA--TTTACTCAATATACATGTTCGAACTCATCTTATTACAAGTA-TGTCTCAAAACAATGTCTAC------AT-----TTAAATAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGACAGAAGCGGAGTAGACCCAAC---TGTTTCGGAAGCTGATTGTTAGTGTCTG-TTA-A-ATTAACATTGACATGTAGTCATATAGTGGGAGTAAT-ACATTTTCCAGATTGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109235 : GGATATGACATAATAGGGGGCGTAACAGATCACAGAGAAATAATGAAAAAAGA----TATAAAATAAAGGCAATTAATGTTTTA--TTTACTTAATATACATGTTCAAACTCATCTTGTTACAAGTA-TATCTTAAAACAATGTCTAC------AT-----TTAAACAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGACAAAAGCAGTGTAGACCCAAC---TGTTTTGGAAGCTGATTGTTAGTGT----------------------ATGTAGTCATATAGTGGAAGTAAT-ACATTATCCAGATGGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109236 : GAATATGACATAATAGGGGGTGTAACAGATCACAGAGAAATAATGAAAAAAGT----TATAAAATAAAAGCAATTAATGTTTTA--TTTACTTAATATACATGTTCAAACTCATCTTGTTACAAGTA-TGTCTTAAAACAATGTCTAC------GT-----TTAAATAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGACAGAAGCAGAGTAGACCCAAC---TGTTTTGGAAGCTGATTGTTAGTGTCTG-TTA-ATATTAACATTGACATGTAGTCATATAGTGGGAGTAAT-ACATTATCCATATTGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109237 : GGATATGACATAATAGGGGGTGTAACAGGTCACAGAGAAATAATGAAAAAC-A----TAAAAAATAAAGGCAATTTACGTTTTA--TTTACTCAATATACATGTTCGAACTCATCTTATTACAAGTA-TGTCTCAAAACAATGTCTAC------AT-----TTAAATAAAGTTTATAATTTACTTTACATATC-----AGTTGTACAGACAGACGCAGAGTAGACCCAAC---TGTTTCGGAAGCTGATTGTTAGTGT----------------------ATGTAGTCATATAGTGGGAGTAAT-ACATTTTCCAGATTGTCAAGTGCAGTT---------------CTG---CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-TA----ATTTAC---------GGGGACTATATTTC---TGA-C-TGTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109238 : GGATATGACATAATAGGGGGTGCGACAGATCACAGAGAAATAATGAAAAAACA----TATAAAATAAAGGCAATTAACGTTTTA--TTTACTCATTATACATGTTCGAACTC---TTATTACAAGTA-TGTCTCAAAACAATGTCTAC------AT-----TTAAATAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGAGAGAAGCAGAGTAGACCCAAC---TGTTTCGGAAGCTGATTGTTAGTGT----------------------ATGTAATCATATAGTGGGAGTAAT-ACATTTTCCAGATTGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TT---ACAA-------GTGTAC-CA----ATTTAT----------GGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCAT-TTTTC
gi|109239 : GGATATGACGTAATAGGGGATGTAACAGATCACAGAGAAATAATGGAAAAAAAACCATATAAAATAAAGGCAATTAACGTTTTA--TTTACTCATTATACATGTTCGAACTCATCTTATTACAAGTA-TGTCTCAAAACAATGTCTAC------AT-----TTAAATAAAGCTGATAATTTACTTTACATATC-----AGTTGTACAGACAGAAGCAGAGTAGACCCAAC---TGTTTCGGAAGCTAATTGTTAGTGT----------------------ATGTAGTAATATAGTGGAAGTAAT-ACATTTTCCAGATTGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TA---ACAG-------TTGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-CATTTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109240 : GGATACAACATAATAGGCGGTGTAACAGATCACAGAGAAATAATGAAAAAA------CATAAAATAAAGGCAATTAACGTTTTA--TTTACTCATTATACATGTTCGAACTCATCTTATTACAAGTA-TGTCTCAAAACAATGTCTAC------AT-----TTAAATAAAGCTTATAATTTACTTTGCATATC-----AGTTGTACAGATAGAAGTAGAGCAGACCCAAC---TGTTTCGGAAGCTGATTGTTAGTGT----------------------ATGTAGTCATATAGTGGGAGTAAT-ACATTTTCCAGATTGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-CA----GTTTAT----------GGGACTATATTTC---TGA-C-ATTTT-----TGTGTCT-CTGTCATTATGTTTT
gi|109241 : GGATATGACATAATAGGGGGTGTAACAGATCACAGAGAAATAATGAAAAAC-A----TATAAAATAAAGGCAATTAACATTTTA--TTTACTCAATATACATGTTCGAACTCATCTTATTACAA-TAGTGTCTCAAAACAATGTATAC------AT-----TTAAATAAAGCTTATAATTTACATTACATATA-----AGTTGTACAGACAGAAGCAGAGTAGACCCAAC---TGTTTCGGAAGCTGATTGTTGGTGT----------------------ATGTAGTCATATAGTGGGAGTAAT-ACATTTTCCAGATTGT--------------------------------CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109242 : GGATATGACATAATAGGGTGTGTAACAGATCAGAGAGAAATAATGAAGAAAGA----TATAAAATAAAGGCAATTAACGTTTTA--TTTACTTAATATACATGTTCGAACACATTTTAATACAAGCA-TGTCTTAAAACAATGTCTAC------AT-----TTAAATAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGACAGAAGCAGAGTAGACACAAC---TGCTTTGGAAGCTG-TTGTTAGTGTCTGTTTA-T-ATTAACATTGACATGTAGTCATATAGTGGGAGTAAT-TCATTTTCCAGATTGTCAAGTGCAGTC---------------CTG---TAAA----T--------ATATACT-TA---ACGG-------ATGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGATC-TTTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109243 : GGATATGACATAATAGGGGGTGTTG-AGATCACAGAGAAATAATGAAAAAAGA----TG--AAATAAAGGCAATTAACGTTTTACATTTACTTTATATACATGTTCGAACTCATCTTATTACAAGTA-TGTCTTAAA-CAATGTCTAC------AT-----TTAAATAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGACAGAAGCTGAGTAGACCCAAC---TGTTTCGGAAGCTGTTTGTTAGTGTCTG-TTA-ATATTAACATTGACATGTAGTCATATAGTGGGAGTAAT-ACATTTTCAAGATTGTCAACTG
gi|109244 : ATGACGTAAGATGGGA-GTTACAGATTGCAGGGAAGTAATGAAAAAATA----TATAAAAT---------TAATGTTTTA--TTGATCTAATATGCATGTTCGAAATCATTTTATTACACGCA-TGACCCAAAACAATGTCTACTTTTAGATAAAGCTTAAATAAAGCTTATGTTTTACTTAACATATC-----TGTTGT----ACAGAAGTGAAGCAAATCCA-------TTTTGGAAACAAATTGTTAGTATCAG--TA-A-A
gi|109245 : GTAACAGATCACAGAGAAATAGTGAAAAGCCA----TATAAA-TAA-GGCAATTAACGTTTTA--TTTACGCAATATACGTGTTTGAAATCATCTTATTACAAGTA-TATCTCAAACCAATGTTCAC------AT-----TTAAATAAATCTGATATTGTACTTGACATATC-----TGTTGCACAGACAGAAGTGAAGCAGACCCAACTGTTGTTTCGGAGGCAGTTTGTTAGTGTATG-TTA-ATATTAATATTGACATGTAACCATATAGTGGAAGTCAT-ATATTTTCCAGAATGTCAAGTGCAGTCCGGAAAAGGGCA---CTG---CAAG----A--------ATAAACC-TT---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACGATATTTC---TTA-C-ATTCTGATGACGTGTCT-CTGTCATCATATTTTcat
gi|109246 : ATCGCAGACAA-TAATGATATGCCT----TATAAAATAAAGACA------GTTTCA--TTTATTCAATATGCATGTTAAAA-TCATTTTATTACATGTA-TTTCTTAAAACAATATTT-T------AT-----TTTAGTAAAGCTTATAGTTTGCTTTACATATT-----TGTTGGATAGACTGAAGTGACGCAGACCCAAT---TG-TTCGGAAG-TGA
gi|109247 : TACATATCTAGATAGTTGTATAGGCGGATGTGAAGCAGACCAAAT---TATTTCGGAAGCAGATTGTTAGTGTCTG-TTACA-ATTAACATTGAAATTAAGCCATTTATTGGGAGAAAT-ACCTGCACCTGATTGTCAAGTGCAGT----------------CTGGAATAAA----A--------ATATATTGTTAAAACAGACATGACATATAC-AA----ATTTAA---------TGGGACCATATTCC---TGA-C-TTTTTGATGACGTATCTACTTCTCTCATATTTT
gi|109248 : GGAAACAGATTGTTAGTATTCG-TTA-ATATTAACATTGACATGAAGCCTTAAATTGGGAGTAAT-ACATGTTCCAGATTGTCAAGTGCAGTC---------------CGG---AAAAAGGCTCTGGAGGAATATACT-TC---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACCATATTTCTTATGA-C------------GTGTCT-CTGTCATCATGTTTTC
gi|109249 : CATGCAGCCATATACTTGGAGTATTTACATGTTCCAGAGTGTCACGTGCAGTCCGGGAAAAAAAGGCTCTG---CAAG----A--------AGACACT-TC---ACAG-------GTGCACACATGCCATATACAAATAGAAGGGAGACCATATTTC---TGA-C-TTTTTGATTACGCGTCT-CTTTCACCATGTTTCC
gi|109250 : tgTG---CAAA----T--------ATATACT-TT---ACAG-------GTGAAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-TTGTCATCATTTTTTC
gi|109251 : TG---CAAA----T--------ATGTACT-TT---ACTG-------GTGTAC-CA----ATTGAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCATTTTTTC
Alignments
lowQualScore : 9999999999999999999999 333333333333333 1111111111111 111111111 22222
lowQualScore : 44 7777 1 44 3 999999 88888 77777 1 555 1111111111111111111111 3 777777777777777 555 3333333333333 2 555 9999999 2 6666 111111111 555 2 2 11111 2
lowQualScore : .. .... . .. . ...... ..... ..... . ... ...................... . ............... ... ............. . ... ....... . .... ......... ... . . ..... .
lowQualScore : 22 1111 3 66 3 666666 33333 77777 8 444 4444444444444444444444 1 999999999999999 000 0000000000000 9 000 3333333 9 1111 444444444 000 9 9 44444 9
consensus : GGATATGACATAATAGGGGGTGTAACAGATCACAGAGAAATAATGAAAAAACA----TATAAAATAAAGGCAATTAACGTTTTA--TTTACTCAATATACATGTTCGAACTCATCTTATTACAAGTA-TGTCTCAAAACAATGTCTAC------AT-----TTAAATAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGACAGAAGCGGAGTAGACCCAAC---TGTTTCGGAAGCTGATTGTTAGTGTCTG-TTA-A-ATTAACATTGACATGTAGTCATATAGTGGGAGTAAT-ACATTTTCCAGATTGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCATGTTTTC
Reference ( family-900 ) : GGATATGACATAATAGGGGGTGTAACAGATCACAGAGAAATAATGAAAAAANA----TATAAAATAAAGGCAATTAACGTTTTA--TTTACTCAATATACATGTTCGAACTCATCTTATTACAAGTA-TGTCTCAAAACAATGTCTAC------AT-----TTAAATAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGACAGAAGCGGAGTAGACCCAAC---TGTTTCGGAAGCTGATTGTTAGTGTCTG-TTA-A-ATTAACATTGACATGTAGTCATATAGTGGGAGTAAT-ACATTTTCCAGATTGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109235 : GGATATGACATAATAGGGGGCGTAACAGATCACAGAGAAATAATGAAAAAAGA----TATAAAATAAAGGCAATTAATGTTTTA--TTTACTTAATATACATGTTCAAACTCATCTTGTTACAAGTA-TATCTTAAAACAATGTCTAC------AT-----TTAAACAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGACAAAAGCAGTGTAGACCCAAC---TGTTTTGGAAGCTGATTGTTAGTGT----------------------ATGTAGTCATATAGTGGAAGTAAT-ACATTATCCAGATGGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109236 : GAATATGACATAATAGGGGGTGTAACAGATCACAGAGAAATAATGAAAAAAGT----TATAAAATAAAAGCAATTAATGTTTTA--TTTACTTAATATACATGTTCAAACTCATCTTGTTACAAGTA-TGTCTTAAAACAATGTCTAC------GT-----TTAAATAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGACAGAAGCAGAGTAGACCCAAC---TGTTTTGGAAGCTGATTGTTAGTGTCTG-TTA-ATATTAACATTGACATGTAGTCATATAGTGGGAGTAAT-ACATTATCCATATTGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109237 : GGATATGACATAATAGGGGGTGTAACAGGTCACAGAGAAATAATGAAAAA-CA----TAAAAAATAAAGGCAATTTACGTTTTA--TTTACTCAATATACATGTTCGAACTCATCTTATTACAAGTA-TGTCTCAAAACAATGTCTAC------AT-----TTAAATAAAGTTTATAATTTACTTTACATATC-----AGTTGTACAGACAGACGCAGAGTAGACCCAAC---TGTTTCGGAAGCTGATTGTTAGTGT----------------------ATGTAGTCATATAGTGGGAGTAAT-ACATTTTCCAGATTGTCAAGTGCAGTT---------------CTG---CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-TA----ATTTAC---------GGGGACTATATTTC---TGA-C-TGTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109238 : GGATATGACATAATAGGGGGTGCGACAGATCACAGAGAAATAATGAAAAAACA----TATAAAATAAAGGCAATTAACGTTTTA--TTTACTCATTATACATGTTCGAACTC---TTATTACAAGTA-TGTCTCAAAACAATGTCTAC------AT-----TTAAATAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGAGAGAAGCAGAGTAGACCCAAC---TGTTTCGGAAGCTGATTGTTAGTGT----------------------ATGTAATCATATAGTGGGAGTAAT-ACATTTTCCAGATTGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TT---ACAA-------GTGTAC-CA----ATTTAT----------GGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCAT-TTTTC
gi|109239 : GGATATGACGTAATAGGGGATGTAACAGATCACAGAGAAATAATGGAAAAAAAACCATATAAAATAAAGGCAATTAACGTTTTA--TTTACTCATTATACATGTTCGAACTCATCTTATTACAAGTA-TGTCTCAAAACAATGTCTAC------AT-----TTAAATAAAGCTGATAATTTACTTTACATATC-----AGTTGTACAGACAGAAGCAGAGTAGACCCAAC---TGTTTCGGAAGCTAATTGTTAGTGT----------------------ATGTAGTAATATAGTGGAAGTAAT-ACATTTTCCAGATTGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TA---ACAG-------TTGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-CATTTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109240 : GGATACAACATAATAGGCGGTGTAACAGATCACAGAGAAATAATGAAAAAACA----TA--AAATAAAGGCAATTAACGTTTTA--TTTACTCATTATACATGTTCGAACTCATCTTATTACAAGTA-TGTCTCAAAACAATGTCTAC------AT-----TTAAATAAAGCTTATAATTTACTTTGCATATC-----AGTTGTACAGATAGAAGTAGAGCAGACCCAAC---TGTTTCGGAAGCTGATTGTTAGTGT----------------------ATGTAGTCATATAGTGGGAGTAAT-ACATTTTCCAGATTGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-CA----GTTTAT----------GGGACTATATTTC---TGA-C-ATTTT-----TGTGTCT-CTGTCATTATGTTTT
gi|109241 : GGATATGACATAATAGGGGGTGTAACAGATCACAGAGAAATAATGAAAAA-CA----TATAAAATAAAGGCAATTAACATTTTA--TTTACTCAATATACATGTTCGAACTCATCTTATTACAA-TAGTGTCTCAAAACAATGTATAC------AT-----TTAAATAAAGCTTATAATTTACATTACATATA-----AGTTGTACAGACAGAAGCAGAGTAGACCCAAC---TGTTTCGGAAGCTGATTGTTGGTGT----------------------ATGTAGTCATATAGTGGGAGTAAT-ACATTTTCCAGATTGT--------------------------------CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109242 : GGATATGACATAATAGGGTGTGTAACAGATCAGAGAGAAATAATGAAGAAAGA----TATAAAATAAAGGCAATTAACGTTTTA--TTTACTTAATATACATGTTCGAACACATTTTAATACAAGCA-TGTCTTAAAACAATGTCTAC------AT-----TTAAATAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGACAGAAGCAGAGTAGACACAAC---TGCTTTGGAAGCTG-TTGTTAGTGTCTGTTTA-T-ATTAACATTGACATGTAGTCATATAGTGGGAGTAAT-TCATTTTCCAGATTGTCAAGTGCAGTC---------------CTG---TAAA----T--------ATATACT-TA---ACGG-------ATGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGATC-TTTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109243 : GGATATGACATAATAGGGGGTGTTG-AGATCACAGAGAAATAATGAAAAAAGA----TG--AAATAAAGGCAATTAACGTTTTACATTTACTTTATATACATGTTCGAACTCATCTTATTACAAGTA-TGTCTTAAA-CAATGTCTAC------AT-----TTAAATAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGACAGAAGCTGAGTAGACCCAAC---TGTTTCGGAAGCTGTTTGTTAGTGTCTG-TTA-ATATTAACATTGACATGTAGTCATATAGTGGGAGTAAT-ACATTTTCAAGATTGTCAACTG
gi|109244 : ATGACGTAAGATGGGA-GTTACAGATTGCAGGGAAGTAATGAAAAAATA----TATAAAAT---------TAATGTTTTA--TTGATCTAATATGCATGTTCGAAATCATTTTATTACACGCA-TGACCCAAAACAATGTCTACTTTTAGATAAAGCTTAAATAAAGCTTATGTTTTACTTAACATATC-----TGTTGT----ACAGAAGTGAAGCAAATCCA-------TTTTGGAAACAAATTGTTAGTATCAG--TA-A-A
gi|109245 : GTAACAGATCACAGAGAAATAGTGAAAAGCCA----TATAAA-TAA-GGCAATTAACGTTTTA--TTTACGCAATATACGTGTTTGAAATCATCTTATTACAAGTA-TATCTCAAACCAATGTTCAC------AT-----TTAAATAAATCTGATATTGTACTTGACATATC-----TGTTGCACAGACAGAAGTGAAGCAGACCCAACTGTTGTTTCGGAGGCAGTTTGTTAGTGTATG-TTA-ATATTAATATTGACATGTAACCATATAGTGGAAGTCAT-ATATTTTCCAGAATGTCAAGTGCAGTCCGGAAAAGGGCA---CTG---CAAG----A--------ATAAACC-TT---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACGATATTTC---TTA-C-ATTCTGATGACGTGTCT-CTGTCATCATATTTTcat
gi|109246 : ATCGCAGACAA-TAATGATATGCCT----TATAAAATAAAGACA------GTTTCA--TTTATTCAATATGCATGTTAAAA-TCATTTTATTACATGTA-TTTCTTAAAACAATATTT-T------AT-----TTTAGTAAAGCTTATAGTTTGCTTTACATATT-----TGTTGGATAGACTGAAGTGACGCAGACCCAAT---TG-TTCGGAAG-TGA
gi|109247 : TACATATCTAGATAGTTGTATAGGCGGATGTGAAGCAGACCAAAT---TATTTCGGAAGCAGATTGTTAGTGTCTG-TTACA-ATTAACATTGAAATTAAGCCATTTATTGGGAGAAAT-ACCTGCACCTGATTGTCAAGTGCAGT----------------CTGGAATAAA----A--------ATATATTGTTAAAACAGACATGACATATAC-AA----ATTTAA---------TGGGACCATATTCC---TGA-C-TTTTTGATGACGTATCTACTTCTCTCATATTTT
gi|109248 : GGAAACAGATTGTTAGTATTCG-TTA-ATATTAACATTGACATGAAGCCTTAAATTGGGAGTAAT-ACATGTTCCAGATTGTCAAGTGCAGTC---------------CGG---AAAAAGGCTCTGGAGGAATATACT-TC---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACCATATTTCTTATGA-C------------GTGTCT-CTGTCATCATGTTTTC
gi|109249 : CATGCAGCCATATACTTGGAGTATTTACATGTTCCAGAGTGTCACGTGCAGTCCGGGAAAAAAAGGCTCTG---CAAG----A--------AGACACT-TC---ACAG-------GTGCACACATGCCATATACAAATAGAAGGGAGACCATATTTC---TGA-C-TTTTTGATTACGCGTCT-CTTTCACCATGTTTCC
gi|109250 : tgTG---CAAA----T--------ATATACT-TT---ACAG-------GTGAAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-TTGTCATCATTTTTTC
gi|109251 : TG---CAAA----T--------ATGTACT-TT---ACTG-------GTGTAC-CA----ATTGAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCATTTTTTC
Alignments
lowQualScore : 9999999999999999999999 333333333333333 1111111111111 111111111 22222
lowQualScore : 7777 1 44 3 999999 88888 77777 1 555 1111111111111111111111 3 777777777777777 555 3333333333333 2 555 9999999 2 6666 111111111 555 2 2 11111 2
lowQualScore : .... . .. . ...... ..... ..... . ... ...................... . ............... ... ............. . ... ....... . .... ......... ... . . ..... .
lowQualScore : 1111 3 66 3 666666 33333 77777 8 444 4444444444444444444444 1 999999999999999 000 0000000000000 9 000 3333333 9 1111 444444444 000 9 9 44444 9
consensus : GGATATGACATAATAGGGGGTGTAACAGATCACAGAGAAATAATGAAAAAA----CATATAAAATAAAGGCAATTAACGTTTTA--TTTACTCAATATACATGTTCGAACTCATCTTATTACAAGTA-TGTCTCAAAACAATGTCTAC------AT-----TTAAATAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGACAGAAGCGGAGTAGACCCAAC---TGTTTCGGAAGCTGATTGTTAGTGTCTG-TTA-A-ATTAACATTGACATGTAGTCATATAGTGGGAGTAAT-ACATTTTCCAGATTGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCATGTTTTC
Reference ( family-900 ) : GGATATGACATAATAGGGGGTGTAACAGATCACAGAGAAATAATGAAAAAA----CATATAAAATAAAGGCAATTAACGTTTTA--TTTACTCAATATACATGTTCGAACTCATCTTATTACAAGTA-TGTCTCAAAACAATGTCTAC------AT-----TTAAATAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGACAGAAGCGGAGTAGACCCAAC---TGTTTCGGAAGCTGATTGTTAGTGTCTG-TTA-A-ATTAACATTGACATGTAGTCATATAGTGGGAGTAAT-ACATTTTCCAGATTGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109235 : GGATATGACATAATAGGGGGCGTAACAGATCACAGAGAAATAATGAAAAAA----GATATAAAATAAAGGCAATTAATGTTTTA--TTTACTTAATATACATGTTCAAACTCATCTTGTTACAAGTA-TATCTTAAAACAATGTCTAC------AT-----TTAAACAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGACAAAAGCAGTGTAGACCCAAC---TGTTTTGGAAGCTGATTGTTAGTGT----------------------ATGTAGTCATATAGTGGAAGTAAT-ACATTATCCAGATGGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109236 : GAATATGACATAATAGGGGGTGTAACAGATCACAGAGAAATAATGAAAAAA----GTTATAAAATAAAAGCAATTAATGTTTTA--TTTACTTAATATACATGTTCAAACTCATCTTGTTACAAGTA-TGTCTTAAAACAATGTCTAC------GT-----TTAAATAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGACAGAAGCAGAGTAGACCCAAC---TGTTTTGGAAGCTGATTGTTAGTGTCTG-TTA-ATATTAACATTGACATGTAGTCATATAGTGGGAGTAAT-ACATTATCCATATTGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109237 : GGATATGACATAATAGGGGGTGTAACAGGTCACAGAGAAATAATGAAAAA-----CATAAAAAATAAAGGCAATTTACGTTTTA--TTTACTCAATATACATGTTCGAACTCATCTTATTACAAGTA-TGTCTCAAAACAATGTCTAC------AT-----TTAAATAAAGTTTATAATTTACTTTACATATC-----AGTTGTACAGACAGACGCAGAGTAGACCCAAC---TGTTTCGGAAGCTGATTGTTAGTGT----------------------ATGTAGTCATATAGTGGGAGTAAT-ACATTTTCCAGATTGTCAAGTGCAGTT---------------CTG---CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-TA----ATTTAC---------GGGGACTATATTTC---TGA-C-TGTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109238 : GGATATGACATAATAGGGGGTGCGACAGATCACAGAGAAATAATGAAAAAA----CATATAAAATAAAGGCAATTAACGTTTTA--TTTACTCATTATACATGTTCGAACTC---TTATTACAAGTA-TGTCTCAAAACAATGTCTAC------AT-----TTAAATAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGAGAGAAGCAGAGTAGACCCAAC---TGTTTCGGAAGCTGATTGTTAGTGT----------------------ATGTAATCATATAGTGGGAGTAAT-ACATTTTCCAGATTGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TT---ACAA-------GTGTAC-CA----ATTTAT----------GGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCAT-TTTTC
gi|109239 : GGATATGACGTAATAGGGGATGTAACAGATCACAGAGAAATAATGGAAAAAAAACCATATAAAATAAAGGCAATTAACGTTTTA--TTTACTCATTATACATGTTCGAACTCATCTTATTACAAGTA-TGTCTCAAAACAATGTCTAC------AT-----TTAAATAAAGCTGATAATTTACTTTACATATC-----AGTTGTACAGACAGAAGCAGAGTAGACCCAAC---TGTTTCGGAAGCTAATTGTTAGTGT----------------------ATGTAGTAATATAGTGGAAGTAAT-ACATTTTCCAGATTGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TA---ACAG-------TTGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-CATTTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109240 : GGATACAACATAATAGGCGGTGTAACAGATCACAGAGAAATAATGAAAAAA----CATA--AAATAAAGGCAATTAACGTTTTA--TTTACTCATTATACATGTTCGAACTCATCTTATTACAAGTA-TGTCTCAAAACAATGTCTAC------AT-----TTAAATAAAGCTTATAATTTACTTTGCATATC-----AGTTGTACAGATAGAAGTAGAGCAGACCCAAC---TGTTTCGGAAGCTGATTGTTAGTGT----------------------ATGTAGTCATATAGTGGGAGTAAT-ACATTTTCCAGATTGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-CA----GTTTAT----------GGGACTATATTTC---TGA-C-ATTTT-----TGTGTCT-CTGTCATTATGTTTT
gi|109241 : GGATATGACATAATAGGGGGTGTAACAGATCACAGAGAAATAATGAAAA-A----CATATAAAATAAAGGCAATTAACATTTTA--TTTACTCAATATACATGTTCGAACTCATCTTATTACAA-TAGTGTCTCAAAACAATGTATAC------AT-----TTAAATAAAGCTTATAATTTACATTACATATA-----AGTTGTACAGACAGAAGCAGAGTAGACCCAAC---TGTTTCGGAAGCTGATTGTTGGTGT----------------------ATGTAGTCATATAGTGGGAGTAAT-ACATTTTCCAGATTGT--------------------------------CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109242 : GGATATGACATAATAGGGTGTGTAACAGATCAGAGAGAAATAATGAAGAAA----GATATAAAATAAAGGCAATTAACGTTTTA--TTTACTTAATATACATGTTCGAACACATTTTAATACAAGCA-TGTCTTAAAACAATGTCTAC------AT-----TTAAATAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGACAGAAGCAGAGTAGACACAAC---TGCTTTGGAAGCTG-TTGTTAGTGTCTGTTTA-T-ATTAACATTGACATGTAGTCATATAGTGGGAGTAAT-TCATTTTCCAGATTGTCAAGTGCAGTC---------------CTG---TAAA----T--------ATATACT-TA---ACGG-------ATGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGATC-TTTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109243 : GGATATGACATAATAGGGGGTGTTG-AGATCACAGAGAAATAATGAAAAAA----GATG--AAATAAAGGCAATTAACGTTTTACATTTACTTTATATACATGTTCGAACTCATCTTATTACAAGTA-TGTCTTAAA-CAATGTCTAC------AT-----TTAAATAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGACAGAAGCTGAGTAGACCCAAC---TGTTTCGGAAGCTGTTTGTTAGTGTCTG-TTA-ATATTAACATTGACATGTAGTCATATAGTGGGAGTAAT-ACATTTTCAAGATTGTCAACTG
gi|109244 : ATGACGTAAGATGGGA-GTTACAGATTGCAGGGAAGTAATGAAAAAA----TATATAAAAT---------TAATGTTTTA--TTGATCTAATATGCATGTTCGAAATCATTTTATTACACGCA-TGACCCAAAACAATGTCTACTTTTAGATAAAGCTTAAATAAAGCTTATGTTTTACTTAACATATC-----TGTTGT----ACAGAAGTGAAGCAAATCCA-------TTTTGGAAACAAATTGTTAGTATCAG--TA-A-A
gi|109245 : GTAACAGATCACAGAGAAATAGTGAAAAGC----CATATAAA-TAA-GGCAATTAACGTTTTA--TTTACGCAATATACGTGTTTGAAATCATCTTATTACAAGTA-TATCTCAAACCAATGTTCAC------AT-----TTAAATAAATCTGATATTGTACTTGACATATC-----TGTTGCACAGACAGAAGTGAAGCAGACCCAACTGTTGTTTCGGAGGCAGTTTGTTAGTGTATG-TTA-ATATTAATATTGACATGTAACCATATAGTGGAAGTCAT-ATATTTTCCAGAATGTCAAGTGCAGTCCGGAAAAGGGCA---CTG---CAAG----A--------ATAAACC-TT---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACGATATTTC---TTA-C-ATTCTGATGACGTGTCT-CTGTCATCATATTTTcat
gi|109246 : ATCGCAGACAA-TAATGATATGC----CTTATAAAATAAAGACA------GTTTCA--TTTATTCAATATGCATGTTAAAA-TCATTTTATTACATGTA-TTTCTTAAAACAATATTT-T------AT-----TTTAGTAAAGCTTATAGTTTGCTTTACATATT-----TGTTGGATAGACTGAAGTGACGCAGACCCAAT---TG-TTCGGAAG-TGA
gi|109247 : TACATATCTAGATAGTTGTATAGGCGGATGTGAAGCAGACCAAAT---TATTTCGGAAGCAGATTGTTAGTGTCTG-TTACA-ATTAACATTGAAATTAAGCCATTTATTGGGAGAAAT-ACCTGCACCTGATTGTCAAGTGCAGT----------------CTGGAATAAA----A--------ATATATTGTTAAAACAGACATGACATATAC-AA----ATTTAA---------TGGGACCATATTCC---TGA-C-TTTTTGATGACGTATCTACTTCTCTCATATTTT
gi|109248 : GGAAACAGATTGTTAGTATTCG-TTA-ATATTAACATTGACATGAAGCCTTAAATTGGGAGTAAT-ACATGTTCCAGATTGTCAAGTGCAGTC---------------CGG---AAAAAGGCTCTGGAGGAATATACT-TC---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACCATATTTCTTATGA-C------------GTGTCT-CTGTCATCATGTTTTC
gi|109249 : CATGCAGCCATATACTTGGAGTATTTACATGTTCCAGAGTGTCACGTGCAGTCCGGGAAAAAAAGGCTCTG---CAAG----A--------AGACACT-TC---ACAG-------GTGCACACATGCCATATACAAATAGAAGGGAGACCATATTTC---TGA-C-TTTTTGATTACGCGTCT-CTTTCACCATGTTTCC
gi|109250 : tgTG---CAAA----T--------ATATACT-TT---ACAG-------GTGAAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-TTGTCATCATTTTTTC
gi|109251 : TG---CAAA----T--------ATGTACT-TT---ACTG-------GTGTAC-CA----ATTGAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCATTTTTTC
Alignments
lowQualScore : 9999999999999999999999 333333333333333 1111111111111 111111111 22222
lowQualScore : 7777 1 44 3 999999 88888 77777 1 555 1111111111111111111111 3 777777777777777 555 3333333333333 2 555 9999999 2 6666 111111111 555 2 2 11111 2
lowQualScore : .... . .. . ...... ..... ..... . ... ...................... . ............... ... ............. . ... ....... . .... ......... ... . . ..... .
lowQualScore : 1111 3 66 3 666666 33333 77777 8 444 4444444444444444444444 1 999999999999999 000 0000000000000 9 000 3333333 9 1111 444444444 000 9 9 44444 9
consensus : GGATATGACATAATAGGGGGTGTAACAGATCACAGAGAAATAATGAAAAAA----CATATAAAATAAAGGCAATTAACGTTTTA--TTTACTCAATATACATGTTCGAACTCATCTTATTACAAGTA-TGTCTCAAAACAATGTCTAC------AT-----TTAAATAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGACAGAAGCGGAGTAGACCCAAC---TGTTTCGGAAGCTGATTGTTAGTGTCTG-TTA-A-ATTAACATTGACATGTAGTCATATAGTGGGAGTAAT-ACATTTTCCAGATTGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCATGTTTTC
Reference ( family-900 ) : GGATATGACATAATAGGGGGTGTAACAGATCACAGAGAAATAATGAAAAAA----CATATAAAATAAAGGCAATTAACGTTTTA--TTTACTCAATATACATGTTCGAACTCATCTTATTACAAGTA-TGTCTCAAAACAATGTCTAC------AT-----TTAAATAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGACAGAAGCGGAGTAGACCCAAC---TGTTTCGGAAGCTGATTGTTAGTGTCTG-TTA-A-ATTAACATTGACATGTAGTCATATAGTGGGAGTAAT-ACATTTTCCAGATTGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109235 : GGATATGACATAATAGGGGGCGTAACAGATCACAGAGAAATAATGAAAAAA----GATATAAAATAAAGGCAATTAATGTTTTA--TTTACTTAATATACATGTTCAAACTCATCTTGTTACAAGTA-TATCTTAAAACAATGTCTAC------AT-----TTAAACAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGACAAAAGCAGTGTAGACCCAAC---TGTTTTGGAAGCTGATTGTTAGTGT----------------------ATGTAGTCATATAGTGGAAGTAAT-ACATTATCCAGATGGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109236 : GAATATGACATAATAGGGGGTGTAACAGATCACAGAGAAATAATGAAAAAA----GTTATAAAATAAAAGCAATTAATGTTTTA--TTTACTTAATATACATGTTCAAACTCATCTTGTTACAAGTA-TGTCTTAAAACAATGTCTAC------GT-----TTAAATAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGACAGAAGCAGAGTAGACCCAAC---TGTTTTGGAAGCTGATTGTTAGTGTCTG-TTA-ATATTAACATTGACATGTAGTCATATAGTGGGAGTAAT-ACATTATCCATATTGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109237 : GGATATGACATAATAGGGGGTGTAACAGGTCACAGAGAAATAATGAAAAA-----CATAAAAAATAAAGGCAATTTACGTTTTA--TTTACTCAATATACATGTTCGAACTCATCTTATTACAAGTA-TGTCTCAAAACAATGTCTAC------AT-----TTAAATAAAGTTTATAATTTACTTTACATATC-----AGTTGTACAGACAGACGCAGAGTAGACCCAAC---TGTTTCGGAAGCTGATTGTTAGTGT----------------------ATGTAGTCATATAGTGGGAGTAAT-ACATTTTCCAGATTGTCAAGTGCAGTT---------------CTG---CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-TA----ATTTAC---------GGGGACTATATTTC---TGA-C-TGTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109238 : GGATATGACATAATAGGGGGTGCGACAGATCACAGAGAAATAATGAAAAAA----CATATAAAATAAAGGCAATTAACGTTTTA--TTTACTCATTATACATGTTCGAACTC---TTATTACAAGTA-TGTCTCAAAACAATGTCTAC------AT-----TTAAATAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGAGAGAAGCAGAGTAGACCCAAC---TGTTTCGGAAGCTGATTGTTAGTGT----------------------ATGTAATCATATAGTGGGAGTAAT-ACATTTTCCAGATTGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TT---ACAA-------GTGTAC-CA----ATTTAT----------GGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCAT-TTTTC
gi|109239 : GGATATGACGTAATAGGGGATGTAACAGATCACAGAGAAATAATGGAAAAAAAACCATATAAAATAAAGGCAATTAACGTTTTA--TTTACTCATTATACATGTTCGAACTCATCTTATTACAAGTA-TGTCTCAAAACAATGTCTAC------AT-----TTAAATAAAGCTGATAATTTACTTTACATATC-----AGTTGTACAGACAGAAGCAGAGTAGACCCAAC---TGTTTCGGAAGCTAATTGTTAGTGT----------------------ATGTAGTAATATAGTGGAAGTAAT-ACATTTTCCAGATTGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TA---ACAG-------TTGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-CATTTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109240 : GGATACAACATAATAGGCGGTGTAACAGATCACAGAGAAATAATGAAAAAA----CATA--AAATAAAGGCAATTAACGTTTTA--TTTACTCATTATACATGTTCGAACTCATCTTATTACAAGTA-TGTCTCAAAACAATGTCTAC------AT-----TTAAATAAAGCTTATAATTTACTTTGCATATC-----AGTTGTACAGATAGAAGTAGAGCAGACCCAAC---TGTTTCGGAAGCTGATTGTTAGTGT----------------------ATGTAGTCATATAGTGGGAGTAAT-ACATTTTCCAGATTGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-CA----GTTTAT----------GGGACTATATTTC---TGA-C-ATTTT-----TGTGTCT-CTGTCATTATGTTTT
gi|109241 : GGATATGACATAATAGGGGGTGTAACAGATCACAGAGAAATAATGAAAA-A----CATATAAAATAAAGGCAATTAACATTTTA--TTTACTCAATATACATGTTCGAACTCATCTTATTACAA-TAGTGTCTCAAAACAATGTATAC------AT-----TTAAATAAAGCTTATAATTTACATTACATATA-----AGTTGTACAGACAGAAGCAGAGTAGACCCAAC---TGTTTCGGAAGCTGATTGTTGGTGT----------------------ATGTAGTCATATAGTGGGAGTAAT-ACATTTTCCAGATTGT--------------------------------CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109242 : GGATATGACATAATAGGGTGTGTAACAGATCAGAGAGAAATAATGAAGAAA----GATATAAAATAAAGGCAATTAACGTTTTA--TTTACTTAATATACATGTTCGAACACATTTTAATACAAGCA-TGTCTTAAAACAATGTCTAC------AT-----TTAAATAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGACAGAAGCAGAGTAGACACAAC---TGCTTTGGAAGCTG-TTGTTAGTGTCTGTTTA-T-ATTAACATTGACATGTAGTCATATAGTGGGAGTAAT-TCATTTTCCAGATTGTCAAGTGCAGTC---------------CTG---TAAA----T--------ATATACT-TA---ACGG-------ATGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGATC-TTTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109243 : GGATATGACATAATAGGGGGTGTTG-AGATCACAGAGAAATAATGAAAAAA----GATG--AAATAAAGGCAATTAACGTTTTACATTTACTTTATATACATGTTCGAACTCATCTTATTACAAGTA-TGTCTTAAA-CAATGTCTAC------AT-----TTAAATAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGACAGAAGCTGAGTAGACCCAAC---TGTTTCGGAAGCTGTTTGTTAGTGTCTG-TTA-ATATTAACATTGACATGTAGTCATATAGTGGGAGTAAT-ACATTTTCAAGATTGTCAACTG
gi|109244 : ATGACGTAAGATGGGA-GTTACAGATTGCAGGGAAGTAATGAAAAAA----TATATAAAAT---------TAATGTTTTA--TTGATCTAATATGCATGTTCGAAATCATTTTATTACACGCA-TGACCCAAAACAATGTCTACTTTTAGATAAAGCTTAAATAAAGCTTATGTTTTACTTAACATATC-----TGTTGT----ACAGAAGTGAAGCAAATCCA-------TTTTGGAAACAAATTGTTAGTATCAG--TA-A-A
gi|109245 : GTAACAGATCACAGAGAAATAGTGAAAAGC----CATATAAA-TAA-GGCAATTAACGTTTTA--TTTACGCAATATACGTGTTTGAAATCATCTTATTACAAGTA-TATCTCAAACCAATGTTCAC------AT-----TTAAATAAATCTGATATTGTACTTGACATATC-----TGTTGCACAGACAGAAGTGAAGCAGACCCAACTGTTGTTTCGGAGGCAGTTTGTTAGTGTATG-TTA-ATATTAATATTGACATGTAACCATATAGTGGAAGTCAT-ATATTTTCCAGAATGTCAAGTGCAGTCCGGAAAAGGGCA---CTG---CAAG----A--------ATAAACC-TT---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACGATATTTC---TTA-C-ATTCTGATGACGTGTCT-CTGTCATCATATTTTcat
gi|109246 : ATCGCAGACAA-TAATGATATGC----CTTATAAAATAAAGACA------GTTTCA--TTTATTCAATATGCATGTTAAAA-TCATTTTATTACATGTA-TTTCTTAAAACAATATTT-T------AT-----TTTAGTAAAGCTTATAGTTTGCTTTACATATT-----TGTTGGATAGACTGAAGTGACGCAGACCCAAT---TG-TTCGGAAG-TGA
gi|109247 : TACATATCTAGATAGTTGTATAGGCGGATGTGAAGCAGACCAAAT---TATTTCGGAAGCAGATTGTTAGTGTCTG-TTACA-ATTAACATTGAAATTAAGCCATTTATTGGGAGAAAT-ACCTGCACCTGATTGTCAAGTGCAGT----------------CTGGAATAAA----A--------ATATATTGTTAAAACAGACATGACATATAC-AA----ATTTAA---------TGGGACCATATTCC---TGA-C-TTTTTGATGACGTATCTACTTCTCTCATATTTT
gi|109248 : GGAAACAGATTGTTAGTATTCG-TTA-ATATTAACATTGACATGAAGCCTTAAATTGGGAGTAAT-ACATGTTCCAGATTGTCAAGTGCAGTC---------------CGG---AAAAAGGCTCTGGAGGAATATACT-TC---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACCATATTTCTTATGA-C------------GTGTCT-CTGTCATCATGTTTTC
gi|109249 : CATGCAGCCATATACTTGGAGTATTTACATGTTCCAGAGTGTCACGTGCAGTCCGGGAAAAAAAGGCTCTG---CAAG----A--------AGACACT-TC---ACAG-------GTGCACACATGCCATATACAAATAGAAGGGAGACCATATTTC---TGA-C-TTTTTGATTACGCGTCT-CTTTCACCATGTTTCC
gi|109250 : tgTG---CAAA----T--------ATATACT-TT---ACAG-------GTGAAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-TTGTCATCATTTTTTC
gi|109251 : TG---CAAA----T--------ATGTACT-TT---ACTG-------GTGTAC-CA----ATTGAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCATTTTTTC
blockSeqs : AAAC T CA G TTTTAG AAAGC TAGAT A TGT CTGTTAATATTAACATTGAC T CGGGAAAAAAAGGCT GAA AGGCTCTGGAGGA G AAA ACATGAC A TGCC AAATAGAAG TTA T A GATGA A
blockSeqs : . A . . . . . A . CTGTTTATATTAACATTGAC . CGGAAAAGGGCA . T . . . . . . . . . GATGA .
blockSeqs : . T . . . . . A . CTGTTAATATTAACATTGAC . . . T . . . . . . . . . GATTA .
blockSeqs : . T . . . . . A . ATGTTAATATTAATATTGAC . . . T . . . . . . . . . . .
blockSeqs : . T . . . . . A . CTGTTACAATTAACATTGAA . . . T . . . . . . . . . . .
blockSeqs : . T . . . . . A . TCGTTAATATTAACATTGAC . . . T . . . . . . . . . . .
blockSeqs : . T . . . . . A . . . . . T . . . . . . . . . . .
blockSeqs : . T . . . . . T . . . . . T . . . . . . . . . . .
blockSeqs : . T . . . . . G . . . . . A . . . . . . . . . . .
blockSeqs : . . . . . . . G . . . . . A . . . . . . . . . . .
blockSeqs : . . . . . . . G . . . . . A . . . . . . . . . . .
blockSeqs : . G . . . T . . . . . . . . . . .
blockSeqs : . T . . . . . . . . . . .
blockSeqCons : CTGTTAATATTAACATTGAC**
originalCons : GGATATGACATAATAGGGGGTGTAACAGATCACAGAGAAATAATGAAAAAA----CATATAAAATAAAGGCAATTAACGTTTTA--TTTACTCAATATACATGTTCGAACTCATCTTATTACAAGTA-TGTCTCAAAACAATGTCTAC------AT-----TTAAATAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGACAGAAGCGGAGTAGACCCAAC---TGTTTCGGAAGCTGATTGTTAGTGTCTG-TTA-A-ATTAACATTGACATGTAGTCATATAGTGGGAGTAAT-ACATTTTCCAGATTGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCATGTTTTC
finalCons : GGATATGACATAATAGGGGGTGTAACAGATCACAGAGAAATAATGAAAAAA----CATATAAAATAAAGGCAATTAACGTTTTA--TTTACTCAATATACATGTTCGAACTCATCTTATTACAAGTA-TGTCTCAAAACAATGTCTAC------AT-----TTAAATAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGACAGAAGCGGAGTAGACCCAAC---TGTTTCGGAAGCTGATTGTTAGTGTCTGTTAATATTAACATTGAC--ATGTAGTCATATAGTGGGAGTAAT-ACATTTTCCAGATTGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCATGTTTTC
Alignments
lowQualScore : 77777777777777777777 333333333333333 1111111111111 111111111 22222
lowQualScore : 7777 1 44 3 999999 88888 77777 1 555 77777777777777777777 3 777777777777777 555 3333333333333 2 555 9999999 2 6666 111111111 555 2 2 11111 2
lowQualScore : .... . .. . ...... ..... ..... . ... .................... . ............... ... ............. . ... ....... . .... ......... ... . . ..... .
lowQualScore : 1111 3 66 3 666666 33333 77777 8 444 33333333333333333333 1 999999999999999 000 0000000000000 9 000 3333333 9 1111 444444444 000 9 9 44444 9
consensus : GGATATGACATAATAGGGGGTGTAACAGATCACAGAGAAATAATGAAAAAA----CATATAAAATAAAGGCAATTAACGTTTTA--TTTACTCAATATACATGTTCGAACTCATCTTATTACAAGTA-TGTCTCAAAACAATGTCTAC------AT-----TTAAATAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGACAGAAGCGGAGTAGACCCAAC---TGTTTCGGAAGCTGATTGTTAGTGTCTGTTAATATTAACATTGACATGTAGTCATATAGTGGGAGTAAT-ACATTTTCCAGATTGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCATGTTTTC
Reference ( family-900 ) : GGATATGACATAATAGGGGGTGTAACAGATCACAGAGAAATAATGAAAAAA----CATATAAAATAAAGGCAATTAACGTTTTA--TTTACTCAATATACATGTTCGAACTCATCTTATTACAAGTA-TGTCTCAAAACAATGTCTAC------AT-----TTAAATAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGACAGAAGCGGAGTAGACCCAAC---TGTTTCGGAAGCTGATTGTTAGTGTCTGTTAATATTAACATTGACATGTAGTCATATAGTGGGAGTAAT-ACATTTTCCAGATTGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109235 : GGATATGACATAATAGGGGGCGTAACAGATCACAGAGAAATAATGAAAAAA----GATATAAAATAAAGGCAATTAATGTTTTA--TTTACTTAATATACATGTTCAAACTCATCTTGTTACAAGTA-TATCTTAAAACAATGTCTAC------AT-----TTAAACAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGACAAAAGCAGTGTAGACCCAAC---TGTTTTGGAAGCTGATTGTTAGTGT--------------------ATGTAGTCATATAGTGGAAGTAAT-ACATTATCCAGATGGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109236 : GAATATGACATAATAGGGGGTGTAACAGATCACAGAGAAATAATGAAAAAA----GTTATAAAATAAAAGCAATTAATGTTTTA--TTTACTTAATATACATGTTCAAACTCATCTTGTTACAAGTA-TGTCTTAAAACAATGTCTAC------GT-----TTAAATAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGACAGAAGCAGAGTAGACCCAAC---TGTTTTGGAAGCTGATTGTTAGTGTCTGTTAATATTAACATTGACATGTAGTCATATAGTGGGAGTAAT-ACATTATCCATATTGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109237 : GGATATGACATAATAGGGGGTGTAACAGGTCACAGAGAAATAATGAAAAA-----CATAAAAAATAAAGGCAATTTACGTTTTA--TTTACTCAATATACATGTTCGAACTCATCTTATTACAAGTA-TGTCTCAAAACAATGTCTAC------AT-----TTAAATAAAGTTTATAATTTACTTTACATATC-----AGTTGTACAGACAGACGCAGAGTAGACCCAAC---TGTTTCGGAAGCTGATTGTTAGTGT--------------------ATGTAGTCATATAGTGGGAGTAAT-ACATTTTCCAGATTGTCAAGTGCAGTT---------------CTG---CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-TA----ATTTAC---------GGGGACTATATTTC---TGA-C-TGTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109238 : GGATATGACATAATAGGGGGTGCGACAGATCACAGAGAAATAATGAAAAAA----CATATAAAATAAAGGCAATTAACGTTTTA--TTTACTCATTATACATGTTCGAACTC---TTATTACAAGTA-TGTCTCAAAACAATGTCTAC------AT-----TTAAATAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGAGAGAAGCAGAGTAGACCCAAC---TGTTTCGGAAGCTGATTGTTAGTGT--------------------ATGTAATCATATAGTGGGAGTAAT-ACATTTTCCAGATTGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TT---ACAA-------GTGTAC-CA----ATTTAT----------GGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCAT-TTTTC
gi|109239 : GGATATGACGTAATAGGGGATGTAACAGATCACAGAGAAATAATGGAAAAAAAACCATATAAAATAAAGGCAATTAACGTTTTA--TTTACTCATTATACATGTTCGAACTCATCTTATTACAAGTA-TGTCTCAAAACAATGTCTAC------AT-----TTAAATAAAGCTGATAATTTACTTTACATATC-----AGTTGTACAGACAGAAGCAGAGTAGACCCAAC---TGTTTCGGAAGCTAATTGTTAGTGT--------------------ATGTAGTAATATAGTGGAAGTAAT-ACATTTTCCAGATTGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TA---ACAG-------TTGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-CATTTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109240 : GGATACAACATAATAGGCGGTGTAACAGATCACAGAGAAATAATGAAAAAA----CATA--AAATAAAGGCAATTAACGTTTTA--TTTACTCATTATACATGTTCGAACTCATCTTATTACAAGTA-TGTCTCAAAACAATGTCTAC------AT-----TTAAATAAAGCTTATAATTTACTTTGCATATC-----AGTTGTACAGATAGAAGTAGAGCAGACCCAAC---TGTTTCGGAAGCTGATTGTTAGTGT--------------------ATGTAGTCATATAGTGGGAGTAAT-ACATTTTCCAGATTGTCAAGTGCAGTC---------------CTG---CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-CA----GTTTAT----------GGGACTATATTTC---TGA-C-ATTTT-----TGTGTCT-CTGTCATTATGTTTT
gi|109241 : GGATATGACATAATAGGGGGTGTAACAGATCACAGAGAAATAATGAAAA-A----CATATAAAATAAAGGCAATTAACATTTTA--TTTACTCAATATACATGTTCGAACTCATCTTATTACAA-TAGTGTCTCAAAACAATGTATAC------AT-----TTAAATAAAGCTTATAATTTACATTACATATA-----AGTTGTACAGACAGAAGCAGAGTAGACCCAAC---TGTTTCGGAAGCTGATTGTTGGTGT--------------------ATGTAGTCATATAGTGGGAGTAAT-ACATTTTCCAGATTGT--------------------------------CAAA----T--------ATATACT-TT---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109242 : GGATATGACATAATAGGGTGTGTAACAGATCAGAGAGAAATAATGAAGAAA----GATATAAAATAAAGGCAATTAACGTTTTA--TTTACTTAATATACATGTTCGAACACATTTTAATACAAGCA-TGTCTTAAAACAATGTCTAC------AT-----TTAAATAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGACAGAAGCAGAGTAGACACAAC---TGCTTTGGAAGCTG-TTGTTAGTGTCTGTTTATATTAACATTGACATGTAGTCATATAGTGGGAGTAAT-TCATTTTCCAGATTGTCAAGTGCAGTC---------------CTG---TAAA----T--------ATATACT-TA---ACGG-------ATGTAC-CA----ATTTAT---------GGGGACTATATTTC---TGATC-TTTTT-----TGTGTCT-CTGTCATCATGTTTTC
gi|109243 : GGATATGACATAATAGGGGGTGTTG-AGATCACAGAGAAATAATGAAAAAA----GATG--AAATAAAGGCAATTAACGTTTTACATTTACTTTATATACATGTTCGAACTCATCTTATTACAAGTA-TGTCTTAAA-CAATGTCTAC------AT-----TTAAATAAAGCTTATAATTTACTTTACATATC-----AGTTGTACAGACAGAAGCTGAGTAGACCCAAC---TGTTTCGGAAGCTGTTTGTTAGTGTCTGTTAATATTAACATTGACATGTAGTCATATAGTGGGAGTAAT-ACATTTTCAAGATTGTCAACTG
gi|109244 : ATGACGTAAGATGGGA-GTTACAGATTGCAGGGAAGTAATGAAAAAA----TATATAAAAT---------TAATGTTTTA--TTGATCTAATATGCATGTTCGAAATCATTTTATTACACGCA-TGACCCAAAACAATGTCTACTTTTAGATAAAGCTTAAATAAAGCTTATGTTTTACTTAACATATC-----TGTTGT----ACAGAAGTGAAGCAAATCCA-------TTTTGGAAACAAATTGTTAGTATCAGTAAACAT
gi|109245 : GTAACAGATCACAGAGAAATAGTGAAAAGC----CATATAAA-TAA-GGCAATTAACGTTTTA--TTTACGCAATATACGTGTTTGAAATCATCTTATTACAAGTA-TATCTCAAACCAATGTTCAC------AT-----TTAAATAAATCTGATATTGTACTTGACATATC-----TGTTGCACAGACAGAAGTGAAGCAGACCCAACTGTTGTTTCGGAGGCAGTTTGTTAGTGTATGTTAATATTAATATTGACATGTAACCATATAGTGGAAGTCAT-ATATTTTCCAGAATGTCAAGTGCAGTCCGGAAAAGGGCA---CTG---CAAG----A--------ATAAACC-TT---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACGATATTTC---TTA-C-ATTCTGATGACGTGTCT-CTGTCATCATATTTT
gi|109246 : ATCGCAGACAA-TAATGATATGC----CTTATAAAATAAAGACA------GTTTCA--TTTATTCAATATGCATGTTAAAA-TCATTTTATTACATGTA-TTTCTTAAAACAATATTT-T------AT-----TTTAGTAAAGCTTATAGTTTGCTTTACATATT-----TGTTGGATAGACTGAAGTGACGCAGACCCAAT---TG-TTCGGAAG-TGA
gi|109247 : TACATATCTAGATAGTTGTATAGGCGGATGTGAAGCAGACCAAAT---TATTTCGGAAGCAGATTGTTAGTGTCTGTTACAATTAACATTGAAATTAAGCCATTTATTGGGAGAAAT-ACCTGCACCTGATTGTCAAGTGCAGT----------------CTGGAATAAA----A--------ATATATTGTTAAAACAGACATGACATATAC-AA----ATTTAA---------TGGGACCATATTCC---TGA-C-TTTTTGATGACGTATCTACTTCTCTCATATTTT
gi|109248 : GGAAACAGATTGTTAGTATTCGTTAATATTAACATTGACATGAAGCCTTAAATTGGGAGTAAT-ACATGTTCCAGATTGTCAAGTGCAGTC---------------CGG---AAAAAGGCTCTGGAGGAATATACT-TC---ACAG-------GTGTAC-CA----ATTTAT---------GGGGACCATATTTCTTATGA-C------------GTGTCT-CTGTCATCATGTTTTC
gi|109249 : CATGCAGCCATATACTTGGAGTATTTACATGTTCCAGAGTGTCACGTGCAGTCCGGGAAAAAAAGGCTCTG---CAAG----A--------AGACACT-TC---ACAG-------GTGCACACATGCCATATACAAATAGAAGGGAGACCATATTTC---TGA-C-TTTTTGATTACGCGTCT-CTTTCACCATGTTTCC
gi|109250 : tgTG---CAAA----T--------ATATACT-TT---ACAG-------GTGAAC-CA----ATTTAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-TTGTCATCATTTTTTC
gi|109251 : TG---CAAA----T--------ATGTACT-TT---ACTG-------GTGTAC-CA----ATTGAT---------GGGGACTATATTTC---TGA-C-TTTTT-----TGTGTCT-CTGTCATCATTTTTTC