lowQualScore : 1 1 1 1 1
lowQualScore : 11 5 5 5 6 2 2 1 8 777 1 4 0 3 1
lowQualScore : .. . . . . . . . . ... . . . . .
lowQualScore : 55 0 2 1 5 5 5 6 6 222 4 8 5 1 9
consensus : TACCGTAAATCTCCAAGTATAANCCGCACTCGAGTATAATCCGCAGG-TGATTT-TGAAGCCGAAACTGGTGGAAAAAAGCTAGTATACGTCTATAATCCGCAGGCATG-AATCAGTTG
Reference ( gi|141987 ) : TACCGTAAATCGCCAATTATAAACCGCACACAAGTATAATCCGCAGG-TGATTT-TGAAGCCGAAACTGGTCGAAAAAAGCTAGTATCTGTCTATAATCCGTAGGCATG-AATCAGATG
gi|141990 : TACCGTAAATCTCCCATTATAAACCGCACCCAAGTATAATCCGCAGG-TGATTT-TAAAGCCGAAACTGGTCGAAAAAAGCTAATATCCGTTCATAATCTGCAGGCATG-AATCAGATG
gi|141994 : TACCGTAAATCGCTAATTATAAACTGCACCCAAGTATAATCCGCAGG-GGATTTATTAAGCCGAAACTGGTCGAAAAAAGCTAGTATCCGTCCATAATCCGCAGGCATG-ACCCAGCTG
gi|141992 : TACCGTAAATCTCCAATTATAAACCGCACCCGAGTATAATCCCCAGG-TGATTT-TGAAGCCGAAAATGGTTGAAAAAAGCTAGTATCCGTCCATAATACGCAGGCATG-TATTAGCTG
gi|141989 : TACCGTATATCTCCTATTATGAACCGCACTGAAGTATAATCCGCAGG-TGATTT-TGAAGCCGAAACTGGTTGAAAAAAGCTAGTATACCTCTATAAACCGCAGGCATG-AATCAGGTG
gi|141993 : TACTGTAAATCTCCTATTATACACTGCACTCAAGTATAATCCACAGG-TGATTT-TGAAGCCGAAACTGGTCAAAAAAGGCTAGTATACCTCTATAATCTGCAGGCATG-AATCA
gi|141985 : TACCGTATTTTCCCAAGTATAATCCGCACTTGA-TATAATCCGCAGG-TGATTT-TGAAACCAAAACTGGTGGAAAAAAGCTAGTATATGTCTAAAACCCGCAGGCATG-AATCAG
gi|141986 : TACCATATTTC-CCAAGTATAATCCGCACTCAAGAATGATCTGCAGG-TGATTT-TGAAGCCAAAACTGATTGAAAAAAGCTAGGTTACGACTATTATCCACAGGCATG-AATCAGTTGtcg
gi|141995 : TACTGTAATCTTTTAAATATAAGCCACAATTGAGTATAACCCGCAGGCTGATTT-TGAAACC-AAACTGGTGGAAA
gi|141988 : TCCCTAAGTATAACCCGCACTCGAGTATAACACACAGT-TGATTT-TGAAGCCAAAACTAGTGGAAAAAAACTAGTATACAATTATTATCCGCAGGCATG-AATCAGTTG
gi|141997 : taccatatttCCAAGTATAATCTGCACTCGAGTATAATCCGCAGG-TGATTT-TGAAGTCAAAACTAGTAGAATAAAGCTAGTATACATCTATTATCTGTAGACATG-AATCAGTTG
gi|141996 : atttcCCAAGTATAATCCACACTCGCGTATTATCCGCAGG-TGATTT-TGAAGCCAAAATTGGTGGAAACAAGTAAGTATACGTCTATTATCTGCAGGCATG-ATTCAGTTG
gi|141991 : agtttcCAAGTATAATCTACACTCAAGTATAATCCGCAGG-TGATTT-TGAAGCCAAAACTGGTGGAAAAAAGCTAGTATACGACTATTATCC
gi|141998 : tactgtatttttgCGAGTATAATCTGCAGGCTGAATT-TGAAGCC-AAACAGGTGGAAAAAAGCTTGTAT
gi|141999 : ccGTATAACCCACAGGCTGATTT-TGAAACC-AAACTGGTGGAAATAGGCTTGTATCTTTGTATGACAAGCAGGCTTGAAATCAG
gi|142000 : GTATAACCAACAGGCTGATTT-TGAAACC-AAACTGGTGGGAATAGGCTTGTATCTTTGTATAACCCACAGGC-TG-Att
gi|142001 : GTATAACCAACAGGCTGATTT-TGAAACC-AAACTGGTGGAAATAGGCTTGTATCTTTGTATAACCAACAGGC-TG-A
Alignments
lowQualScore : 1 1
lowQualScore : 22 2 2 1 1 2 0 1 2 0 0 2 0
lowQualScore : .. . . . . . . . . . . . .
lowQualScore : 88 5 8 0 8 4 4 2 2 5 7 9 6
consensus : TACCGTAAATCTCCAANTATAANCCGCACTCGAGTATAATCCGCAGG-TGATTT-TGAAGCCGAAACTGGTGGAAAAAAGCTAGTATNCGTCTATAATCCGCAGGCATG-AATCAGTTG
Reference ( family-899 ) : TACCGTAAATCTCCAAGTATAANCCGCACTCGAGTATAATCCGCAGG-TGATTT-TGAAGCCGAAACTGGTGGAAAAAAGCTAGTATACGTCTATAATCCGCAGGCATG-AATCAGTTG
gi|141985 : TACCGTATTTTCCCAAGTATAATCCGCACTTGA-TATAATCCGCAGG-TGATTT-TGAAACCAAAACTGGTGGAAAAAAGCTAGTATATGTCTAAAACCCGCAGGCATG-AATCAGTCG
gi|141986 : TACCATATTTC-CCAAGTATAATCCGCACTCAAGAATGATCTGCAGG-TGATTT-TGAAGCCAAAACTGATTGAAAAAAGCTAGGTTACGACTATTATCCACAGGCATG-AATCAGTTG
gi|141987 : TACCGTAAATCGCCAATTATAAACCGCACACAAGTATAATCCGCAGG-TGATTT-TGAAGCCGAAACTGGTCGAAAAAAGCTAGTATCTGTCTATAATCCGTAGGCATG-AATCAGATG
gi|141988 : TCCCTAAGTATAACCCGCACTCGAGTATAACACACAGT-TGATTT-TGAAGCCAAAACTAGTGGAAAAAAACTAGTATACAATTATTATCCGCAGGCATG-AATCAGTTG
gi|141989 : taccatatttTACCGTATATCTCCTATTATGAACCGCACTGAAGTATAATCCGCAGG-TGATTT-TGAAGCCGAAACTGGTTGAAAAAAGCTAGTATACCTCTATAAACCGCAGGCATG-AATCAGGTG
gi|141990 : TACCGTAAATCTCCCATTATAAACCGCACCCAAGTATAATCCGCAGG-TGATTT-TAAAGCCGAAACTGGTCGAAAAAAGCTAATATCCGTTCATAATCTGCAGGCATG-AATCAGATG
gi|141991 : TACTGTATTTTTGCAAGTATAATCTACACTCAAGTATAATCCGCAGG-TGATTT-TGAAGCCAAAACTGGTGGAAAAAAGCTAGTATACGACTATTATCC
gi|141992 : TACCGTAAATCTCCAATTATAAACCGCACCCGAGTATAATCCCCAGG-TGATTT-TGAAGCCGAAAATGGTTGAAAAAAGCTAGTATCCGTCCATAATACGCAGGCATG-TATTAGCTG
gi|141993 : TACTGTAAATCTCCTATTATACACTGCACTCAAGTATAATCCACAGG-TGATTT-TGAAGCCGAAACTGGTCAAAAAAGGCTAGTATACCTCTATAATCTGCAGGCATG-AATCA
gi|141994 : TACCGTAAATCGCTAATTATAAACTGCACCCAAGTATAATCCGCAGG-GGATTTATTAAGCCGAAACTGGTCGAAAAAAGCTAGTATCCGTCCATAATCCGCAGGCATG-ACCCAGCTG
gi|141995 : TACTGTAATCTTTTAAATATAAGCCACAATTGAGTATAACCCGCAGGCTGATTT-TGAAACC-AAACTGGTGGAAA
gi|141996 : CCAAGTATAATCCACACTCGCGTATTATCCGCAGG-TGATTT-TGAAGCCAAAATTGGTGGAAACAAGTAAGTATACGTCTATTATCTGCAGGCATG-ATTCAGTTG
gi|141997 : agtttcCCAAGTATAATCTGCACTCGAGTATAATCCGCAGG-TGATTT-TGAAGTCAAAACTAGTAGAATAAAGCTAGTATACATCTATTATCTGTAGACATG-AATCAGTTG
gi|141998 : atttcCCCGAGTATAATCTGCAGGCTGAATT-TGAAGCC-AAACAGGTGGAAAAAAGCTTGTAT
gi|141999 : GTATAACCCACAGGCTGATTT-TGAAACC-AAACTGGTGGAAATAGGCTTGTATCTTTGTATGACAAGCAGGCTTGAAATCAGTT
gi|142000 : GTATAACCAACAGGCTGATTT-TGAAACC-AAACTGGTGGGAATAGGCTTGTATCTTTGTATAACCCACAGGC-TG-
gi|142001 : GTATAACCAACAGGCTGATTT-TGAAACC-AAACTGGTGGAAATAGGCTTGTATCTTTGTATAACCAACAGGC-TG-
Alignments
lowQualScore : 1 1
lowQualScore : 22 2 1 1 1 2 0 1 1 0 0 2 0
lowQualScore : .. . . . . . . . . . . . .
lowQualScore : 88 5 0 0 8 4 4 2 0 5 7 9 6
consensus : TACCGTAAATCTCCAANTATAANCCGCACTCGAGTATAATCCGCAGG-TGATTT-TGAAGCCGAAACTGGTGGAAAAAAGCTAGTATNCGTCTATAATCCGCAGGCATG-AATCAGTTG
Reference ( family-899 ) : TACCGTAAATCTCCAANTATAANCCGCACTCGAGTATAATCCGCAGG-TGATTT-TGAAGCCGAAACTGGTGGAAAAAAGCTAGTATNCGTCTATAATCCGCAGGCATG-AATCAGTTG
gi|141985 : TACCGTATTTTCCCAAGTATAATCCGCACTTGA-TATAATCCGCAGG-TGATTT-TGAAACCAAAACTGGTGGAAAAAAGCTAGTATATGTCTAAAACCCGCAGGCATG-AATCAGTCG
gi|141986 : TACCATATTTC-CCAAGTATAATCCGCACTCAAGAATGATCTGCAGG-TGATTT-TGAAGCCAAAACTGATTGAAAAAAGCTAGGTTACGACTATTATCCACAGGCATG-AATCAGTTG
gi|141987 : TACCGTAAATCGCCAATTATAAACCGCACACAAGTATAATCCGCAGG-TGATTT-TGAAGCCGAAACTGGTCGAAAAAAGCTAGTATCTGTCTATAATCCGTAGGCATG-AATCAGATG
gi|141988 : TCCCTAAGTATAACCCGCACTCGAGTATAACACACAGT-TGATTT-TGAAGCCAAAACTAGTGGAAAAAAACTAGTATACAATTATTATCCGCAGGCATG-AATCAGTTG
gi|141989 : taccatatttTACCGTATATCTCCTATTATGAACCGCACTGAAGTATAATCCGCAGG-TGATTT-TGAAGCCGAAACTGGTTGAAAAAAGCTAGTATACCTCTATAAACCGCAGGCATG-AATCAGGTG
gi|141990 : TACCGTAAATCTCCCATTATAAACCGCACCCAAGTATAATCCGCAGG-TGATTT-TAAAGCCGAAACTGGTCGAAAAAAGCTAATATCCGTTCATAATCTGCAGGCATG-AATCAGATG
gi|141991 : TACTGTATTTTTGCAAGTATAATCTACACTCAAGTATAATCCGCAGG-TGATTT-TGAAGCCAAAACTGGTGGAAAAAAGCTAGTATACGACTATTATCC
gi|141992 : TACCGTAAATCTCCAATTATAAACCGCACCCGAGTATAATCCCCAGG-TGATTT-TGAAGCCGAAAATGGTTGAAAAAAGCTAGTATCCGTCCATAATACGCAGGCATG-TATTAGCTG
gi|141993 : TACTGTAAATCTCCTATTATACACTGCACTCAAGTATAATCCACAGG-TGATTT-TGAAGCCGAAACTGGTCAAAAAAGGCTAGTATACCTCTATAATCTGCAGGCATG-AATCA
gi|141994 : TACCGTAAATCGCTAATTATAAACTGCACCCAAGTATAATCCGCAGG-GGATTTATTAAGCCGAAACTGGTCGAAAAAAGCTAGTATCCGTCCATAATCCGCAGGCATG-ACCCAGCTG
gi|141995 : TACTGTAATCTTTTAAATATAAGCCACAATTGAGTATAACCCGCAGGCTGATTT-TGAAACC-AAACTGGTGGAAA
gi|141996 : CCAAGTATAATCCACACTCGCGTATTATCCGCAGG-TGATTT-TGAAGCCAAAATTGGTGGAAACAAGTAAGTATACGTCTATTATCTGCAGGCATG-ATTCAGTTG
gi|141997 : agtttcCCAAGTATAATCTGCACTCGAGTATAATCCGCAGG-TGATTT-TGAAGTCAAAACTAGTAGAATAAAGCTAGTATACATCTATTATCTGTAGACATG-AATCAGTTG
gi|141998 : atttcCCCGAGTATAATCTGCAGGCTGAATT-TGAAGCC-AAACAGGTGGAAAAAAGCTTGTAT
gi|141999 : GTATAACCCACAGGCTGATTT-TGAAACC-AAACTGGTGGAAATAGGCTTGTATCTTTGTATGACAAGCAGGCTTGAAATCAGTT
gi|142000 : GTATAACCAACAGGCTGATTT-TGAAACC-AAACTGGTGGGAATAGGCTTGTATCTTTGTATAACCCACAGGC-TG-
gi|142001 : GTATAACCAACAGGCTGATTT-TGAAACC-AAACTGGTGGAAATAGGCTTGTATCTTTGTATAACCAACAGGC-TG-
blockSeqs : TT G G T C A A T A A
blockSeqs : AA C T A C . G C C .
blockSeqs : TA T G C C . A G A .
blockSeqs : AA T T A C . G T A .
blockSeqs : TT T T A C . G C C .
blockSeqs : AA T G T . . A G A .
blockSeqs : AA T T A . . G T C .
blockSeqs : AA G T A . . G C A .
blockSeqs : AT T T A . . G C C .
blockSeqs : . A G . . A G A .
blockSeqs : G T . . A G A .
blockSeqs : G T . . . A C .
blockSeqs : . . . G C .
blockSeqs : . . . G C
blockSeqs : . . . G
blockSeqs : . . . G
blockSeqCons :
originalCons : TACCGTAAATCTCCAANTATAANCCGCACTCGAGTATAATCCGCAGG-TGATTT-TGAAGCCGAAACTGGTGGAAAAAAGCTAGTATNCGTCTATAATCCGCAGGCATG-AATCAGTTG
finalCons : TACCGTAAATCTCCAANTATAANCCGCACTCGAGTATAATCCGCAGG-TGATTT-TGAAGCCGAAACTGGTGGAAAAAAGCTAGTATNCGTCTATAATCCGCAGGCATG-AATCAGTTG
Alignments
lowQualScore : 1 1
lowQualScore : 22 2 1 1 1 2 0 1 1 0 0 2 0
lowQualScore : .. . . . . . . . . . . . .
lowQualScore : 88 5 0 0 8 4 4 2 0 5 7 9 6
consensus : TACCGTAAATCTCCAANTATAANCCGCACTCGAGTATAATCCGCAGG-TGATTT-TGAAGCCGAAACTGGTGGAAAAAAGCTAGTATNCGTCTATAATCCGCAGGCATG-AATCAGTTG
Reference ( family-899 ) : TACCGTAAATCTCCAANTATAANCCGCACTCGAGTATAATCCGCAGG-TGATTT-TGAAGCCGAAACTGGTGGAAAAAAGCTAGTATNCGTCTATAATCCGCAGGCATG-AATCAGTTG
gi|141985 : TACCGTATTTTCCCAAGTATAATCCGCACTTGA-TATAATCCGCAGG-TGATTT-TGAAACCAAAACTGGTGGAAAAAAGCTAGTATATGTCTAAAACCCGCAGGCATG-AATCAGTCG
gi|141986 : TACCATATTTC-CCAAGTATAATCCGCACTCAAGAATGATCTGCAGG-TGATTT-TGAAGCCAAAACTGATTGAAAAAAGCTAGGTTACGACTATTATCCACAGGCATG-AATCAGTTG
gi|141987 : TACCGTAAATCGCCAATTATAAACCGCACACAAGTATAATCCGCAGG-TGATTT-TGAAGCCGAAACTGGTCGAAAAAAGCTAGTATCTGTCTATAATCCGTAGGCATG-AATCAGATG
gi|141988 : TCCCTAAGTATAACCCGCACTCGAGTATAACACACAGT-TGATTT-TGAAGCCAAAACTAGTGGAAAAAAACTAGTATACAATTATTATCCGCAGGCATG-AATCAGTTG
gi|141989 : taccatatttTACCGTATATCTCCTATTATGAACCGCACTGAAGTATAATCCGCAGG-TGATTT-TGAAGCCGAAACTGGTTGAAAAAAGCTAGTATACCTCTATAAACCGCAGGCATG-AATCAGGTG
gi|141990 : TACCGTAAATCTCCCATTATAAACCGCACCCAAGTATAATCCGCAGG-TGATTT-TAAAGCCGAAACTGGTCGAAAAAAGCTAATATCCGTTCATAATCTGCAGGCATG-AATCAGATG
gi|141991 : TACTGTATTTTTGCAAGTATAATCTACACTCAAGTATAATCCGCAGG-TGATTT-TGAAGCCAAAACTGGTGGAAAAAAGCTAGTATACGACTATTATCC
gi|141992 : TACCGTAAATCTCCAATTATAAACCGCACCCGAGTATAATCCCCAGG-TGATTT-TGAAGCCGAAAATGGTTGAAAAAAGCTAGTATCCGTCCATAATACGCAGGCATG-TATTAGCTG
gi|141993 : TACTGTAAATCTCCTATTATACACTGCACTCAAGTATAATCCACAGG-TGATTT-TGAAGCCGAAACTGGTCAAAAAAGGCTAGTATACCTCTATAATCTGCAGGCATG-AATCA
gi|141994 : TACCGTAAATCGCTAATTATAAACTGCACCCAAGTATAATCCGCAGG-GGATTTATTAAGCCGAAACTGGTCGAAAAAAGCTAGTATCCGTCCATAATCCGCAGGCATG-ACCCAGCTG
gi|141995 : TACTGTAATCTTTTAAATATAAGCCACAATTGAGTATAACCCGCAGGCTGATTT-TGAAACC-AAACTGGTGGAAA
gi|141996 : CCAAGTATAATCCACACTCGCGTATTATCCGCAGG-TGATTT-TGAAGCCAAAATTGGTGGAAACAAGTAAGTATACGTCTATTATCTGCAGGCATG-ATTCAGTTG
gi|141997 : agtttcCCAAGTATAATCTGCACTCGAGTATAATCCGCAGG-TGATTT-TGAAGTCAAAACTAGTAGAATAAAGCTAGTATACATCTATTATCTGTAGACATG-AATCAGTTG
gi|141998 : atttcCCCGAGTATAATCTGCAGGCTGAATT-TGAAGCC-AAACAGGTGGAAAAAAGCTTGTAT
gi|141999 : GTATAACCCACAGGCTGATTT-TGAAACC-AAACTGGTGGAAATAGGCTTGTATCTTTGTATGACAAGCAGGCTTGAAATCAGTT
gi|142000 : GTATAACCAACAGGCTGATTT-TGAAACC-AAACTGGTGGGAATAGGCTTGTATCTTTGTATAACCCACAGGC-TG-
gi|142001 : GTATAACCAACAGGCTGATTT-TGAAACC-AAACTGGTGGAAATAGGCTTGTATCTTTGTATAACCAACAGGC-TG-