lowQualScore : 11111111 111111 1 11 222 11 1 1 111
lowQualScore : 77 3 3 7 0 8 0 2 9 11111111 33 2 22 6 0 44 111111 3 11 222 55 66 3 5 000 2 4 4 4
lowQualScore : .. . . . . . . . . ........ .. . .. . . .. ...... . .. ... .. .. . . ... . . . .
lowQualScore : 33 1 1 7 8 4 4 2 5 55555555 77 7 77 6 4 55 555555 0 22 555 00 44 3 0 777 4 5 0 5
consensus : GTGAGGCGA--TTTTGACATT-TAGAGC-TCTACCTCGCCTTCCAAATCGGCCTCTATCGTTGTTTTAATCCCGAATTC-------AA--CCC-TTAT-ACTTACTTGTATGTTTACATATAACATATAAACGTTT---AATAAGTCTAAATTCTCCGACGAT--AAAAT--AC--ATGGTAAAACGAAATACGCCAAAATGTGATCGGTACAGAGAGCG--GGGAAGTGGTACAGAACA-CGTTCTATGAAAATAAGAACGAAAT
Reference ( gi|40277 ) : GTGAGGCGA--TTTTGACATT-TAGAGC-TCTACCTTGCCTTCCAAATCGGCCTCTATCATTGTTTTAATCTCTAATTC-------GA--CCC-TTAT-ACTTACATGTATGTTTACATATAACATATAAACGTTT---AATAAGTCTAAATTATCCGACGAT--AAAA---AC--ATGGTAAAACGAAATATTCCAAAGTGTGATCGGTACATAGAGCA--GGGAAATAGTACAGAACA-CGTTCTATGAAAATAAGAATGAAAT
gi|40280 : GTGAGACGA--TTTTGATATT-TAGAGC-TCTACCTCGCCGTCTAAATCGACCTCTATCGTTGTTTTAATATTGAATTC-------AA--CTC-TTTTTACTTACATGTATGTTTACATATAACATAAACACATTTTTTATTAAGTCTAAATTCTCTGACGAT--AAAAT--AC--ATGGTAAAACGAAATATGCCAAAATGTGATCGGTACAGAGAGCG--AGGAAATGGCACAGAACA-CGTTCTATGAAAATAAGAACGAAAT
gi|40278 : GTGAGGCGA--TTTTGACATT-TAGAGC-TCTACCCCGCCTTCCAGATCGGTCTCTATCGTTGTTT-AATCCCGAATTC-------AA--CCC-TTAT-ATTTACATGTATGTTTACATTTAACATATAAACGTTC---AATAGGTCTAAATTCTCCGACGAT---AAA---AC--ATGGTTAAACGAAATGTGGCAAA-TGTAATCGGTACAGAGAGCT--GGGAAGTGGTACAGAACA-CGTTCTATACAAATAATAAC
gi|40279 : GTTAGGCGA--TTTTGATATT-TAGAGC-TCTACCTCGCCTTCTAAATCGGGCTATATCGTTGTTTTAATCCCGAATTC-------AATTTCA-TTAT---TTACTTGTATGTTTACATGTAACACATACACGTTT---AATAGGTCTAAATTCTCCGACGATA-AAAA---AC--ATAGTCAAACGAAAAATGCCAAAATGTGATCGGTACAGAGAGCG--GGGAAGTGATACAGAGCA-CGTTCTATGAAAATAAGAACGAAAT
gi|40281 : GTGAGAAGA--GTTTGACATT-TAGAGC-TCTGCCTCGCCTTCCAAATAGGCCTCTATCGTTGTTTTAATCCCGAATTC-------AA--CCC-TTAT-ACTTACTTATATATTGACAAATAATATATAAAAGTAT---AATAATACTAAATTCTCTGACGATA-AAAA---AC--ATGGTAAAAAGAAATACGCCAAAGTGTGATCGGTACAGAGAGAG--GGGAGGTAGTACAAAACT-CAATCTATGAAAATAAGAACGAAAT
gi|40282 : GTGAGGCTA--TTTTGACATT-TAGATC-TCTACCTCGCCTTTCAAATCGGCCTCTATCGTTGTTTTAATCCCGAATTC-------AA--TCC-TAAT-ATTTACTTGTATGTTTACATAACACATATAAACGTTA---AAAAGGTCTTAATTCTCTGACGATAAAAAA---AC--GTGGTAAAACGAAAT--------GTGT--TCGGTACAGAGAGCAGCGGGAGGTGGTACAGAACA-CGTTGTATGAAAATAAGAACGAA
gi|40283 : GTGAGACGAC-TTTTGAC------------CTACTTAGCCTTACATA-CGGCATTTAC--TTGTTT-AATCTCGAATTG-------AA--CTTGTTAA-ATTTACATGTATGTTCAGAGACATCAATTAAACGTTT---ATTAAGATTAAAATCTTTGAC--T--AAAATTTGC--ATGGTGAGACAAAATACGTCGATTTGTGGTCGGTAAAGAGACCG--GAGAACTGGTACAGAAAT-CGTGCTATGAAAATAAGAATAAA
gi|40284 : GTGATGCGA--TTTTGACGTT-TAGATC-TCTACCTCGCCTTCCAAATAGGCCTCTGTCGTTGTTTTATTCCCTAATTC-------AA--CCC-TAAT-ACTTACTTGTATGTTTA
gi|40285 : GTGATGCGA--TTTTGACGTT-TAGATC-TCTACCTCGCCTTCCAGATAGGCCTCTGTCGTTGTTTTATTCCCTAATTC-------AA--CCC-TAAT-ACTTACTTGTATGTTTA
gi|40286 : TGAGACGA--GTTTGATATT-TAGAGC-TCTATCTCGCCTTCTAAATCGGCCTCTGTCGTT-TTTTAATCACGAATTC-------AA--CCC-TTCT-ACTTAAATGTATGTTTACATTTAACACATTCATGTTT---AGTAAGTCTAAATTCTCCGACGAT--AAGAT--AC--ATAGTAAAACAAAACATGCCAAAATGTGATCGGTACAGAGAGAG--GAGAAATGGTATAGAATA-CGTTCTATGAAAATAAGAACGAAAT
gi|40287 : TGAGGTGA--TTTTGACATT-TAGAGC-TCTACCTCGCCTTCCGAATCGGCTTCTACCTTTGTTTTAATCCTGAATTC-------AA--CC--------CTTATAC---TGT----------CA-------GTT--------AGTCTAAATTCTCCAATGAT--AAAAA--AC--ATGGTAAAACGAAATACACCAAAATGTGATCAGTACAGAGAGCA--GGGAAGTGGAACAGAACA-CATTCTATGTAAATGAGAACAAAAT
gi|40288 : TGAGACGA--TTTTGGCATT-TAGAGC-TCTACCTCGCCTTCTAAATCGGTCTTTATCGTTGTTTTAATCCCGAATTC-------AA--CCC-TTAT-ACTTACATGTATGTTTACATATAGCATAT-------------TAAGTCTAAATTCTCCGACGAT--AAAA---A
gi|40289 : TGAGGCGA--TTTTGACAATATAGCGCCTCT-CTTCGCCTTTCAAAT--ATTTAAATATTTATTTT--TCTTTAAATCCAGGAATGA--ACC-AT-T-GCTTACTTGAATGTTTAGCGACAATATGTTAACATTT---ATTAAACATAAATTATCCGATGA---AAAT---ACGTATGGCAGAACGAAACAGGTTAAAACGTGATAGATACAGAGATTT--TGGAGATGGAACAGG-CATCGTTCAATGAAAATAAGAACGAAaca
gi|40290 : TGAGGCGATTTTTTACCA---CAGAGC-CCTACTTAGTCTTCGGAATTAGTCTCTACCGTTGTCTGAATCTCGAATTG-------AA--CAA-TTAT-ACTTAGTTTTATGTTTACAGATAGCATTTAAACGTTT---AATTAG
gi|40291 : TCC-------GA--CTC-TTAT-CCTAATTTGTATGTTTAAATATGACATATCAACATTC---A-TAAATCTAAATTCTCCGACGAT--AAATT--AC--ATGGTAAAACGAAATACGCTAAA-TGTGATGGGTACacatacgattgctttaaagacaaaa
gi|40292 : TCC-------GA--CTC-TTAT-CCTAATTTGTATGTTTAAATATGACATATCAACATTC---A-TAAATCTAAATTCTCCGATGAT--AAATT--AC--ATGGTAAAACGAAATACGCTAAA-TGTGATGGGTAC
gi|40293 : TAAAATGAAATATGCCAAATTGTGACTGGTACAGAGATGG--TGGAAGTGGTACCGAAAT-CATTCTACGAAACTAATAACTAAAT
Alignments
lowQualScore : 111
lowQualScore : 2 8888 2 6666 1 33 2 22 0 2 3 888888 2 2 2 2 000 44 1 5 55 3
lowQualScore : . .... . .... . .. . .. . . . ...... . . . . ... .. . . .. .
lowQualScore : 9 9999 9 1111 6 44 5 66 8 5 4 888888 9 9 9 9 888 22 2 3 00 6
consensus : GTGAGGCGA-TTTTGACATT----TAGAGC-TCTACCTCGCCTTCCAAATC----GGCCTCTATCGTTGTTTTAATCCCGAATTCAA--CCC-TTAT-ACTTACTTGTA-TGTTTACATATAACATATAAACGTTT---AATAAGTC-TA-AATT-CTCCGACGAT-AAAAN--AC--ATGGTAAAACGAAATACGCCAAAATGTGATCGGTACAGAGAGCG--GGGAAGTGGTACAGAACA-CGTTCTATGAAAATAAGAACGAAAT
Reference ( family-896 ) : GTGAGGCGA-TTTTGACATT----TAGAGC-TCTACCTCGCCTTCCAAATC----GGCCTCTATCGTTGTTTTAATCCCGAATTCAA--CCC-TTAT-ACTTACTTGTA-TGTTTACATATAACATATAAACGTTT---AATAAGTC-TA-AATT-CTCCGACGAT-AAAAT--AC--ATGGTAAAACGAAATACGCCAAAATGTGATCGGTACAGAGAGCG--GGGAAGTGGTACAGAACA-CGTTCTATGAAAATAAGAACGAAAT
gi|40277 : GTGAGGCGA-TTTTGACATT----TAGAGC-TCTACCTTGCCTTCCAAATC----GGCCTCTATCATTGTTTTAATCTCTAATTCGA--CCC-TTAT-ACTTACATGTA-TGTTTACATATAACATATAAACGTTT---AATAAGTC-TA-AATT-ATCCGACGAT-AAAA---AC--ATGGTAAAACGAAATATTCCAAAGTGTGATCGGTACATAGAGCA--GGGAAATAGTACAGAACA-CGTTCTATGAAAATAAGAATGAAAT
gi|40278 : GTGAGGCGA-TTTTGACATT----TAGAGC-TCTACCCCGCCTTCCAGATC----GGTCTCTATCGTTGTTT-AATCCCGAATTCAA--CCC-TTAT-ATTTACATGTA-TGTTTACATTTAACATATAAACGTTC---AATAGGTC-TA-AATT-CTCCGACGAT-AAA----AC--ATGGTTAAACGAAATGTGGC-AAATGTAATCGGTACAGAGAGCT--GGGAAGTGGTACAGAACA-CGTTCTATACAAATAATAACG
gi|40279 : GTTAGGCGA-TTTTGATATT----TAGAGC-TCTACCTCGCCTTCTAAATC----GGGCTATATCGTTGTTTTAATCCCGAATTCAATTTCA-TTAT---TTACTTGTA-TGTTTACATGTAACACATACACGTTT---AATAGGTC-TA-AATT-CTCCGACGAT-AAAAA--AC--ATAGTCAAACGAAAAATGCCAAAATGTGATCGGTACAGAGAGCG--GGGAAGTGATACAGAGCA-CGTTCTATGAAAATAAGAACGAAAT
gi|40280 : GTGAGACGA-TTTTGATATT----TAGAGC-TCTACCTCGCCGTCTAAATC----GACCTCTATCGTTGTTTTAATATTGAATTCAA--CTC-TTTTTACTTACATGTA-TGTTTACATATAACATAAACACATTTTTTATTAAGTC-TA-AATT-CTCTGACGAT-AAAAT--AC--ATGGTAAAACGAAATATGCCAAAATGTGATCGGTACAGAGAGCG--AGGAAATGGCACAGAACA-CGTTCTATGAAAATAAGAACGAAAT
gi|40281 : GTGAGAAGA-GTTTGACATT----TAGAGC-TCTGCCTCGCCTTCCAAATA----GGCCTCTATCGTTGTTTTAATCCCGAATTCAA--CCC-TTAT-ACTTACTTATA-TATTGACAAATAATATATAAAAGTAT---AATAATAC-TA-AATT-CTCTGACGAT-AAAAA--AC--ATGGTAAAAAGAAATACGCCAAAGTGTGATCGGTACAGAGAGAG--GGGAGGTAGTACAAAACT-CAATCTATGAAAATAAGAACGAAAT
gi|40282 : GTGAGGCTA-TTTTGACATT----TAGATC-TCTACCTCGCCTTTCAAATC----GGCCTCTATCGTTGTTTTAATCCCGAATTCAA--TCC-TAAT-ATTTACTTGTA-TGTTTACATAACACATATAAACGTTA---AAAAGGTC-TT-AATT-CTCTGACGATAAAAAA--AC--GTGGTAAAACG----------AAATGTGTTCGGTACAGAGAGCAGCGGGAGGTGGTACAGAACA-CGTTGTATGAAAATAAGAACGAA
gi|40283 : GTGAGACGACTTTTGAC---------------CTACTTAGCCTTACATA-C----GGCATTTAC--TTGTTT-AATCTCGAATTGAA--CTTGTTAA-ATTTACATGTA-TGTTCAGAGACATCAATTAAACGTTT---ATTAAGAT-TA-AAAT-CTTTGAC--T-AAAATTTGC--ATGGTGAGACAAAATACGTCGATTTGTGGTCGGTAAAGAGACCG--GAGAACTGGTACAGAAAT-CGTGCTATGAAAATAAGAATAAA
gi|40284 : GTGATGCGA-TTTTGACGTT----TAGATC-TCTACCTCGCCTTCCAAATA----GGCCTCTGTCGTTGTTTTATTCCCTAATTCAA--CCC-TAAT-ACTTACTTGTA-TGTTTA
gi|40285 : GTGATGCGA-TTTTGACGTT----TAGATC-TCTACCTCGCCTTCCAGATA----GGCCTCTGTCGTTGTTTTATTCCCTAATTCAA--CCC-TAAT-ACTTACTTGTA-TGTTTA
gi|40286 : TGAGACGA-GTTTGATATT----TAGAGC-TCTATCTCGCCTTCTAAATC----GGCCTCTGTCGTT-TTTTAATCACGAATTCAA--CCC-TTCT-ACTTAAATGTA-TGTTTACATTTAACACATTCATGTTT---AGTAAGTC-TA-AATT-CTCCGACGAT-AAGAT--AC--ATAGTAAAACAAAACATGCCAAAATGTGATCGGTACAGAGAGAG--GAGAAATGGTATAGAATA-CGTTCTATGAAAATAAGAACGAAAT
gi|40287 : TGAGGTGA-TTTTGACATT----TAGAGC-TCTACCTCGCCTTCCGAATC----GGCTTCTACCTTTGTTTTAATCCTGAATTCAA--CC------------CTTATACTGT----------CA-------GTT--------AGTC-TA-AATT-CTCCAATGAT-AAAAA--AC--ATGGTAAAACGAAATACACCAAAATGTGATCAGTACAGAGAGCA--GGGAAGTGGAACAGAACA-CATTCTATGTAAATGAGAACAAAAT
gi|40288 : TGAGACGA-TTTTGGCATT----TAGAGC-TCTACCTCGCCTTCTAAATC----GGTCTTTATCGTTGTTTTAATCCCGAATTCAA--CCC-TTAT-ACTTACATGTA-TGTTTACATATAGCATAT-------------TAAGTC-TA-AATT-CTCCGACGAT-AAAAA--AC--A
gi|40289 : TGAGGCGA-TTTTGACAATA---TAGCGCCTCT-CTTCGCCTTTCAAATATTTAAATATTTATTTTTCTTTAAATCCAGGAATGAA--CCA-TTG---CTTACTTGAA-TGTTTAGCGACAATATGTTAACATTT---ATTAAACA-TA-AATT-ATCCGATGA---AAAT--ACGTATGGCAGAACGAAACAGGTTAAAACGTGATAGATACAGAGATTT--TGGAGATGGAACAGG-CATCGTTCAATGAAAATAAGAACGAA
gi|40290 : TGAGGCGA-TTTT----TTACCACAGAGC-CCTACTTAGTCTTCGGAATT----AGTCTCTACCGTTGTCTGAATCTCGAATTGAA--CAA-TTAT-ACTTAGTTTTA-TGTTTACAGATAGCATTTAAACGTTT---AATTAGACATACGATTGCTTTAAAGAC-AAAA
gi|40291 : TCCGA--CTC-TTAT-CCTAATTTGTA-TGTTTAAATATGACATATCAACATTC---A-TAAATC-TA-AATT-CTCCGACGAT-AAATT--AC--ATGGTAAAACGAAATACGCT-AAATGTGATGGGTAC
gi|40292 : TCCGA--CTC-TTAT-CCTAATTTGTA-TGTTTAAATATGACATATCAACATTC---A-TAAATC-TA-AATT-CTCCGATGAT-AAATT--AC--ATGGTAAAACGAAATACGCT-AAATGTGATGGGTAC
gi|40293 : TAAAATGAAATATGCCAAATTGTGACTGGTACAGAGATGG--TGGAAGTGGTACCGAAAT-CATTCTACGAAACTAATAACTAAAT
Alignments
lowQualScore : 2 8888 2 6666 1 33 2 22 0 2 3 888888 2 2 2 2 999 44 1 5 55 3
lowQualScore : . .... . .... . .. . .. . . . ...... . . . . ... .. . . .. .
lowQualScore : 9 9999 9 1111 6 44 5 66 8 5 4 888888 9 9 9 9 333 22 2 3 00 6
consensus : GTGAGGCGA-TTTTGACATT----TAGAGC-TCTACCTCGCCTTCCAAATC----GGCCTCTATCGTTGTTTTAATCCCGAATTCAA--CCC-TTAT-ACTTACTTGTA-TGTTTACATATAACATATAAACGTTT---AATAAGTC-TA-AATT-CTCCGACGAT-AAAAN--AC--ATGGTAAAACGAAATACGCCAAAATGTGATCGGTACAGAGAGCG--GGGAAGTGGTACAGAACA-CGTTCTATGAAAATAAGAACGAAAT
Reference ( family-896 ) : GTGAGGCGA-TTTTGACATT----TAGAGC-TCTACCTCGCCTTCCAAATC----GGCCTCTATCGTTGTTTTAATCCCGAATTCAA--CCC-TTAT-ACTTACTTGTA-TGTTTACATATAACATATAAACGTTT---AATAAGTC-TA-AATT-CTCCGACGAT-AAAAN--AC--ATGGTAAAACGAAATACGCCAAAATGTGATCGGTACAGAGAGCG--GGGAAGTGGTACAGAACA-CGTTCTATGAAAATAAGAACGAAAT
gi|40277 : GTGAGGCGA-TTTTGACATT----TAGAGC-TCTACCTTGCCTTCCAAATC----GGCCTCTATCATTGTTTTAATCTCTAATTCGA--CCC-TTAT-ACTTACATGTA-TGTTTACATATAACATATAAACGTTT---AATAAGTC-TA-AATT-ATCCGACGAT-AAAA---AC--ATGGTAAAACGAAATATTCCAAAGTGTGATCGGTACATAGAGCA--GGGAAATAGTACAGAACA-CGTTCTATGAAAATAAGAATGAAAT
gi|40278 : GTGAGGCGA-TTTTGACATT----TAGAGC-TCTACCCCGCCTTCCAGATC----GGTCTCTATCGTTGTTT-AATCCCGAATTCAA--CCC-TTAT-ATTTACATGTA-TGTTTACATTTAACATATAAACGTTC---AATAGGTC-TA-AATT-CTCCGACGAT-AAA----AC--ATGGTTAAACGAAATGTGGC-AAATGTAATCGGTACAGAGAGCT--GGGAAGTGGTACAGAACA-CGTTCTATACAAATAATAACG
gi|40279 : GTTAGGCGA-TTTTGATATT----TAGAGC-TCTACCTCGCCTTCTAAATC----GGGCTATATCGTTGTTTTAATCCCGAATTCAATTTCA-TTAT---TTACTTGTA-TGTTTACATGTAACACATACACGTTT---AATAGGTC-TA-AATT-CTCCGACGAT-AAAAA--AC--ATAGTCAAACGAAAAATGCCAAAATGTGATCGGTACAGAGAGCG--GGGAAGTGATACAGAGCA-CGTTCTATGAAAATAAGAACGAAAT
gi|40280 : GTGAGACGA-TTTTGATATT----TAGAGC-TCTACCTCGCCGTCTAAATC----GACCTCTATCGTTGTTTTAATATTGAATTCAA--CTC-TTTTTACTTACATGTA-TGTTTACATATAACATAAACACATTTTTTATTAAGTC-TA-AATT-CTCTGACGAT-AAAAT--AC--ATGGTAAAACGAAATATGCCAAAATGTGATCGGTACAGAGAGCG--AGGAAATGGCACAGAACA-CGTTCTATGAAAATAAGAACGAAAT
gi|40281 : GTGAGAAGA-GTTTGACATT----TAGAGC-TCTGCCTCGCCTTCCAAATA----GGCCTCTATCGTTGTTTTAATCCCGAATTCAA--CCC-TTAT-ACTTACTTATA-TATTGACAAATAATATATAAAAGTAT---AATAATAC-TA-AATT-CTCTGACGAT-AAAAA--AC--ATGGTAAAAAGAAATACGCCAAAGTGTGATCGGTACAGAGAGAG--GGGAGGTAGTACAAAACT-CAATCTATGAAAATAAGAACGAAAT
gi|40282 : GTGAGGCTA-TTTTGACATT----TAGATC-TCTACCTCGCCTTTCAAATC----GGCCTCTATCGTTGTTTTAATCCCGAATTCAA--TCC-TAAT-ATTTACTTGTA-TGTTTACATAACACATATAAACGTTA---AAAAGGTC-TT-AATT-CTCTGACGATAAAAAA--AC--GTGGTAAAACG----------AAATGTGTTCGGTACAGAGAGCAGCGGGAGGTGGTACAGAACA-CGTTGTATGAAAATAAGAACGAA
gi|40283 : GTGAGACGACTTTTGAC---------------CTACTTAGCCTTACATA-C----GGCATTTAC--TTGTTT-AATCTCGAATTGAA--CTTGTTAA-ATTTACATGTA-TGTTCAGAGACATCAATTAAACGTTT---ATTAAGAT-TA-AAAT-CTTTGAC--T-AAAATTTGC--ATGGTGAGACAAAATACGTCGATTTGTGGTCGGTAAAGAGACCG--GAGAACTGGTACAGAAAT-CGTGCTATGAAAATAAGAATAAA
gi|40284 : GTGATGCGA-TTTTGACGTT----TAGATC-TCTACCTCGCCTTCCAAATA----GGCCTCTGTCGTTGTTTTATTCCCTAATTCAA--CCC-TAAT-ACTTACTTGTA-TGTTTA
gi|40285 : GTGATGCGA-TTTTGACGTT----TAGATC-TCTACCTCGCCTTCCAGATA----GGCCTCTGTCGTTGTTTTATTCCCTAATTCAA--CCC-TAAT-ACTTACTTGTA-TGTTTA
gi|40286 : TGAGACGA-GTTTGATATT----TAGAGC-TCTATCTCGCCTTCTAAATC----GGCCTCTGTCGTT-TTTTAATCACGAATTCAA--CCC-TTCT-ACTTAAATGTA-TGTTTACATTTAACACATTCATGTTT---AGTAAGTC-TA-AATT-CTCCGACGAT-AAGAT--AC--ATAGTAAAACAAAACATGCCAAAATGTGATCGGTACAGAGAGAG--GAGAAATGGTATAGAATA-CGTTCTATGAAAATAAGAACGAAAT
gi|40287 : TGAGGTGA-TTTTGACATT----TAGAGC-TCTACCTCGCCTTCCGAATC----GGCTTCTACCTTTGTTTTAATCCTGAATTCAA--CC------------CTTATACTGT----------CA-------GTT--------AGTC-TA-AATT-CTCCAATGAT-AAAAA--AC--ATGGTAAAACGAAATACACCAAAATGTGATCAGTACAGAGAGCA--GGGAAGTGGAACAGAACA-CATTCTATGTAAATGAGAACAAAAT
gi|40288 : TGAGACGA-TTTTGGCATT----TAGAGC-TCTACCTCGCCTTCTAAATC----GGTCTTTATCGTTGTTTTAATCCCGAATTCAA--CCC-TTAT-ACTTACATGTA-TGTTTACATATAGCATAT-------------TAAGTC-TA-AATT-CTCCGACGAT-AAAAA--AC--A
gi|40289 : TGAGGCGA-TTTTGACAATA---TAGCGCCTCT-CTTCGCCTTTCAAATATTTAAATATTTATTTTTCTTTAAATCCAGGAATGAA--CCA-TTG---CTTACTTGAA-TGTTTAGCGACAATATGTTAACATTT---ATTAAACA-TA-AATT-ATCCGATGA---AAAT--ACGTATGGCAGAACGAAACAGGTTAAAACGTGATAGATACAGAGATTT--TGGAGATGGAACAGG-CATCGTTCAATGAAAATAAGAACGAA
gi|40290 : TGAGGCGA-TTTT----TTACCACAGAGC-CCTACTTAGTCTTCGGAATT----AGTCTCTACCGTTGTCTGAATCTCGAATTGAA--CAA-TTAT-ACTTAGTTTTA-TGTTTACAGATAGCATTTAAACGTTT---AATTAGACATACGATTGCTTTAAAGAC-AAAA
gi|40291 : TCCGA--CTC-TTAT-CCTAATTTGTA-TGTTTAAATATGACATATCAACATTC---A-TAAATC-TA-AATT-CTCCGACGAT-AAATT--AC--ATGGTAAAACGAAATACGCT-AAATGTGATGGGTAC
gi|40292 : TCCGA--CTC-TTAT-CCTAATTTGTA-TGTTTAAATATGACATATCAACATTC---A-TAAATC-TA-AATT-CTCCGATGAT-AAATT--AC--ATGGTAAAACGAAATACGCT-AAATGTGATGGGTAC
gi|40293 : TAAAATGAAATATGCCAAATTGTGACTGGTACAGAGATGG--TGGAAGTGGTACCGAAAT-CATTCTACGAAACTAATAACTAAAT
blockSeqs : C ACCA C TTTA T TT G TA C A TTTTAT A C G A TTT GT T A GC T
blockSeqs : . A . . T . . A . A CAA . . . . A . T A . .
blockSeqs : . . . . T . . A . A TAA . . . . T . T A . .
blockSeqs : . . . . T . . A . A TAA . . . . A . C G . .
blockSeqs : . . . . T . . A . A AAA . . . . A . C A . .
blockSeqs : . . . . T . . A . A TAT . . . . T . T A . .
blockSeqs : . . . . T . . A . T TAG . . . . A . C A . .
blockSeqs : . . . . T . . A . T TAT . . . . A . G A . .
blockSeqs : . . . . T . . A . A TAA . . . . T . C . . .
blockSeqs : . . . . A . . A . C CA . . . . T . C . . .
blockSeqs : . . . . G . . C . C CA . . . . T . T .
blockSeqs : . . . . . . . C . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqCons : N**
originalCons : GTGAGGCGA-TTTTGACATT----TAGAGC-TCTACCTCGCCTTCCAAATC----GGCCTCTATCGTTGTTTTAATCCCGAATTCAA--CCC-TTAT-ACTTACTTGTA-TGTTTACATATAACATATAAACGTTT---AATAAGTC-TA-AATT-CTCCGACGAT-AAAAN--AC--ATGGTAAAACGAAATACGCCAAAATGTGATCGGTACAGAGAGCG--GGGAAGTGGTACAGAACA-CGTTCTATGAAAATAAGAACGAAAT
finalCons : GTGAGGCGA-TTTTGACATT----TAGAGC-TCTACCTCGCCTTCCAAATC----GGCCTCTATCGTTGTTTTAATCCCGAATTCAA--CCC-TTAT-ACTTACTTGTA-TGTTTACATATAACATATAAACGTTT---AATAAGTC-TA-AATT-CTCCGACGAT-AAAAN--AC--ATGGTAAAACGAAATACGCCAAAATGTGATCGGTACAGAGAGCG--GGGAAGTGGTACAGAACA-CGTTCTATGAAAATAAGAACGAAAT
Alignments
lowQualScore : 2 8888 2 6666 1 33 2 22 0 2 3 888888 2 2 2 2 999 44 1 5 55 3
lowQualScore : . .... . .... . .. . .. . . . ...... . . . . ... .. . . .. .
lowQualScore : 9 9999 9 1111 6 44 5 66 8 5 4 888888 9 9 9 9 333 22 2 3 00 6
consensus : GTGAGGCGA-TTTTGACATT----TAGAGC-TCTACCTCGCCTTCCAAATC----GGCCTCTATCGTTGTTTTAATCCCGAATTCAA--CCC-TTAT-ACTTACTTGTA-TGTTTACATATAACATATAAACGTTT---AATAAGTC-TA-AATT-CTCCGACGAT-AAAAN--AC--ATGGTAAAACGAAATACGCCAAAATGTGATCGGTACAGAGAGCG--GGGAAGTGGTACAGAACA-CGTTCTATGAAAATAAGAACGAAAT
Reference ( family-896 ) : GTGAGGCGA-TTTTGACATT----TAGAGC-TCTACCTCGCCTTCCAAATC----GGCCTCTATCGTTGTTTTAATCCCGAATTCAA--CCC-TTAT-ACTTACTTGTA-TGTTTACATATAACATATAAACGTTT---AATAAGTC-TA-AATT-CTCCGACGAT-AAAAN--AC--ATGGTAAAACGAAATACGCCAAAATGTGATCGGTACAGAGAGCG--GGGAAGTGGTACAGAACA-CGTTCTATGAAAATAAGAACGAAAT
gi|40277 : GTGAGGCGA-TTTTGACATT----TAGAGC-TCTACCTTGCCTTCCAAATC----GGCCTCTATCATTGTTTTAATCTCTAATTCGA--CCC-TTAT-ACTTACATGTA-TGTTTACATATAACATATAAACGTTT---AATAAGTC-TA-AATT-ATCCGACGAT-AAAA---AC--ATGGTAAAACGAAATATTCCAAAGTGTGATCGGTACATAGAGCA--GGGAAATAGTACAGAACA-CGTTCTATGAAAATAAGAATGAAAT
gi|40278 : GTGAGGCGA-TTTTGACATT----TAGAGC-TCTACCCCGCCTTCCAGATC----GGTCTCTATCGTTGTTT-AATCCCGAATTCAA--CCC-TTAT-ATTTACATGTA-TGTTTACATTTAACATATAAACGTTC---AATAGGTC-TA-AATT-CTCCGACGAT-AAA----AC--ATGGTTAAACGAAATGTGGC-AAATGTAATCGGTACAGAGAGCT--GGGAAGTGGTACAGAACA-CGTTCTATACAAATAATAACG
gi|40279 : GTTAGGCGA-TTTTGATATT----TAGAGC-TCTACCTCGCCTTCTAAATC----GGGCTATATCGTTGTTTTAATCCCGAATTCAATTTCA-TTAT---TTACTTGTA-TGTTTACATGTAACACATACACGTTT---AATAGGTC-TA-AATT-CTCCGACGAT-AAAAA--AC--ATAGTCAAACGAAAAATGCCAAAATGTGATCGGTACAGAGAGCG--GGGAAGTGATACAGAGCA-CGTTCTATGAAAATAAGAACGAAAT
gi|40280 : GTGAGACGA-TTTTGATATT----TAGAGC-TCTACCTCGCCGTCTAAATC----GACCTCTATCGTTGTTTTAATATTGAATTCAA--CTC-TTTTTACTTACATGTA-TGTTTACATATAACATAAACACATTTTTTATTAAGTC-TA-AATT-CTCTGACGAT-AAAAT--AC--ATGGTAAAACGAAATATGCCAAAATGTGATCGGTACAGAGAGCG--AGGAAATGGCACAGAACA-CGTTCTATGAAAATAAGAACGAAAT
gi|40281 : GTGAGAAGA-GTTTGACATT----TAGAGC-TCTGCCTCGCCTTCCAAATA----GGCCTCTATCGTTGTTTTAATCCCGAATTCAA--CCC-TTAT-ACTTACTTATA-TATTGACAAATAATATATAAAAGTAT---AATAATAC-TA-AATT-CTCTGACGAT-AAAAA--AC--ATGGTAAAAAGAAATACGCCAAAGTGTGATCGGTACAGAGAGAG--GGGAGGTAGTACAAAACT-CAATCTATGAAAATAAGAACGAAAT
gi|40282 : GTGAGGCTA-TTTTGACATT----TAGATC-TCTACCTCGCCTTTCAAATC----GGCCTCTATCGTTGTTTTAATCCCGAATTCAA--TCC-TAAT-ATTTACTTGTA-TGTTTACATAACACATATAAACGTTA---AAAAGGTC-TT-AATT-CTCTGACGATAAAAAA--AC--GTGGTAAAACG----------AAATGTGTTCGGTACAGAGAGCAGCGGGAGGTGGTACAGAACA-CGTTGTATGAAAATAAGAACGAA
gi|40283 : GTGAGACGACTTTTGAC---------------CTACTTAGCCTTACATA-C----GGCATTTAC--TTGTTT-AATCTCGAATTGAA--CTTGTTAA-ATTTACATGTA-TGTTCAGAGACATCAATTAAACGTTT---ATTAAGAT-TA-AAAT-CTTTGAC--T-AAAATTTGC--ATGGTGAGACAAAATACGTCGATTTGTGGTCGGTAAAGAGACCG--GAGAACTGGTACAGAAAT-CGTGCTATGAAAATAAGAATAAA
gi|40284 : GTGATGCGA-TTTTGACGTT----TAGATC-TCTACCTCGCCTTCCAAATA----GGCCTCTGTCGTTGTTTTATTCCCTAATTCAA--CCC-TAAT-ACTTACTTGTA-TGTTTA
gi|40285 : GTGATGCGA-TTTTGACGTT----TAGATC-TCTACCTCGCCTTCCAGATA----GGCCTCTGTCGTTGTTTTATTCCCTAATTCAA--CCC-TAAT-ACTTACTTGTA-TGTTTA
gi|40286 : TGAGACGA-GTTTGATATT----TAGAGC-TCTATCTCGCCTTCTAAATC----GGCCTCTGTCGTT-TTTTAATCACGAATTCAA--CCC-TTCT-ACTTAAATGTA-TGTTTACATTTAACACATTCATGTTT---AGTAAGTC-TA-AATT-CTCCGACGAT-AAGAT--AC--ATAGTAAAACAAAACATGCCAAAATGTGATCGGTACAGAGAGAG--GAGAAATGGTATAGAATA-CGTTCTATGAAAATAAGAACGAAAT
gi|40287 : TGAGGTGA-TTTTGACATT----TAGAGC-TCTACCTCGCCTTCCGAATC----GGCTTCTACCTTTGTTTTAATCCTGAATTCAA--CC------------CTTATACTGT----------CA-------GTT--------AGTC-TA-AATT-CTCCAATGAT-AAAAA--AC--ATGGTAAAACGAAATACACCAAAATGTGATCAGTACAGAGAGCA--GGGAAGTGGAACAGAACA-CATTCTATGTAAATGAGAACAAAAT
gi|40288 : TGAGACGA-TTTTGGCATT----TAGAGC-TCTACCTCGCCTTCTAAATC----GGTCTTTATCGTTGTTTTAATCCCGAATTCAA--CCC-TTAT-ACTTACATGTA-TGTTTACATATAGCATAT-------------TAAGTC-TA-AATT-CTCCGACGAT-AAAAA--AC--A
gi|40289 : TGAGGCGA-TTTTGACAATA---TAGCGCCTCT-CTTCGCCTTTCAAATATTTAAATATTTATTTTTCTTTAAATCCAGGAATGAA--CCA-TTG---CTTACTTGAA-TGTTTAGCGACAATATGTTAACATTT---ATTAAACA-TA-AATT-ATCCGATGA---AAAT--ACGTATGGCAGAACGAAACAGGTTAAAACGTGATAGATACAGAGATTT--TGGAGATGGAACAGG-CATCGTTCAATGAAAATAAGAACGAA
gi|40290 : TGAGGCGA-TTTT----TTACCACAGAGC-CCTACTTAGTCTTCGGAATT----AGTCTCTACCGTTGTCTGAATCTCGAATTGAA--CAA-TTAT-ACTTAGTTTTA-TGTTTACAGATAGCATTTAAACGTTT---AATTAGACATACGATTGCTTTAAAGAC-AAAA
gi|40291 : TCCGA--CTC-TTAT-CCTAATTTGTA-TGTTTAAATATGACATATCAACATTC---A-TAAATC-TA-AATT-CTCCGACGAT-AAATT--AC--ATGGTAAAACGAAATACGCT-AAATGTGATGGGTAC
gi|40292 : TCCGA--CTC-TTAT-CCTAATTTGTA-TGTTTAAATATGACATATCAACATTC---A-TAAATC-TA-AATT-CTCCGATGAT-AAATT--AC--ATGGTAAAACGAAATACGCT-AAATGTGATGGGTAC
gi|40293 : TAAAATGAAATATGCCAAATTGTGACTGGTACAGAGATGG--TGGAAGTGGTACCGAAAT-CATTCTACGAAACTAATAACTAAAT