lowQualScore                  :         0               4         444           99999999          
lowQualScore                  :         .               .         ...           ........          
lowQualScore                  :         7               9         444           11111111          
consensus                     : ACGATCAAATAAAAAAATATAAAAATCGTTCGAA---AACGTGCTTTG--------ATATGCACTA
Reference ( gi|95561 )        : ACGATCAAATAAAAAAATATAAAAATCGTTCGAA---AACGTGCTTTG--------ATATGCACTA
gi|95560                      : ACGATCAAATAAAAAAATATAAAAATCGTTCGAA---AACGTGCTTTG--------ATATGCACTA
gi|95562                      : ACGATCAAATAAAAAAATATAAAAATCGTTCGAA---GACGTGCTTTG--------ATATGCACTA
gi|95563                      : ACGATCAAATAAAAAAATATAAAAATCGTTCGAA---GACATGTTTTG--------ATATGCACTA
gi|95565                      : ACGATCAACTAAAAAAATATAAAAATCGTTCGAA---AACGTGCTTTGATCTGTTAATATGCACTA
gi|95564                      : ATGATCAAATAAAAAAATAAAAAAATCGTTTGAA---AACGTACTTTG--------ATATTCACTA
gi|95566                      : ACGATCAAATAAAAAAATATCCAA-TCGTTCGAC---AACGTGCTTTG--------ATATGCACTA
gi|95567                      : ACAGTTAACTAAAAAAATATAAAAATCGTTTGAA---AACATGCTTTG--------ATATGCACTA
gi|95568                      : ACGATCAAATAAAAAAATATCAAA-TCATTCGAC---AACATGCTTTA--------ATATGCACTA
gi|95569                      : ACGATCAA-CAAAAAAATATAAAA-TCGTTCGAC---AACGTGCTTTG--------ATGTGCAC
gi|95570                      : ACAATCAAATAAAAAATCA----AATTGTTCGAC---AACATGCTTTG--------ATATGCACTA
gi|95571                      :  CAATCAAATAAAAAAATATAAAAATCGTTTGAA---AACATGCTTTG--------ATATGCACTA
gi|95573                      :  CGATCAACTAAAAAAATATATAATTCATTCGAA---TACGTGCTTTG--------AAGTGCAC
gi|95572                      :  CGATCAAATAAAAAA-TATCAAA-TC-TTCAAC---AACATGCTTTG--------ATATGCACTA
gi|95574                      :   GATCAAATAAAAAAATATAAAAATCGTTCGAA---AACGTGCTTTG--------ATATGCACTA
gi|95575                      :   GATCAACTAAAAAAATATAAAAATTGTTTGAATTTAACGTGCTTTG--------ATATGCACTA
gi|95576                      :               AAATAAAAAAATCGTTCGAA---AACGTGCTTTG--------ATATGCACTA





Alignments
lowQualScore                  :         0               4         444           88888888          
lowQualScore                  :         .               .         ...           ........          
lowQualScore                  :         1               1         111           55555555          
consensus                     : ACGATCAAATAAAAAAATATAAAAATCGTTCGAA---AACGTGCTTTG--------ATATGCACTA
Reference ( family-888 )      : ACGATCAAATAAAAAAATATAAAAATCGTTCGAA---AACGTGCTTTG--------ATATGCACTA
gi|95560                      : ACGATCAAATAAAAAAATATAAAAATCGTTCGAA---AACGTGCTTTG--------ATATGCACTA
gi|95561                      : ACGATCAAATAAAAAAATATAAAAATCGTTCGAA---AACGTGCTTTG--------ATATGCACTA
gi|95562                      : ACGATCAAATAAAAAAATATAAAAATCGTTCGAA---GACGTGCTTTG--------ATATGCACTA
gi|95563                      : ACGATCAAATAAAAAAATATAAAAATCGTTCGAA---GACATGTTTTG--------ATATGCACTA
gi|95564                      : ATGATCAAATAAAAAAATAAAAAAATCGTTTGAA---AACGTACTTTG--------ATATTCACTA
gi|95565                      : ACGATCAACTAAAAAAATATAAAAATCGTTCGAA---AACGTGCTTTGATCTGTTAATATGCACTA
gi|95566                      : ACGATCAAATAAAAAAATATCCAA-TCGTTCGAC---AACGTGCTTTG--------ATATGCACTA
gi|95567                      : ACAGTTAACTAAAAAAATATAAAAATCGTTTGAA---AACATGCTTTG--------ATATGCACTA
gi|95568                      : ACGATCAAATAAAAAAATATCAAA-TCATTCGAC---AACATGCTTTA--------ATATGCACTA
gi|95569                      : ACGATCAA-CAAAAAAATATAAAA-TCGTTCGAC---AACGTGCTTTG--------ATGTGCAC
gi|95570                      : ACAATCAAATAAAAAATCA----AATTGTTCGAC---AACATGCTTTG--------ATATGCACTA
gi|95571                      :  CAATCAAATAAAAAAATATAAAAATCGTTTGAA---AACATGCTTTG--------ATATGCACTA
gi|95572                      :  CGATCAAATAAAAAA-TATCAAA-TC-TTCAAC---AACATGCTTTG--------ATATGCACTA
gi|95573                      :  CGATCAACTAAAAAAATATATAATTCATTCGAA---TACGTGCTTTG--------AAGTGCAC
gi|95574                      :   GATCAAATAAAAAAATATAAAAATCGTTCGAA---AACGTGCTTTG--------ATATGCACTA
gi|95575                      :   GATCAACTAAAAAAATATAAAAATTGTTTGAATTTAACGTGCTTTG--------ATATGCACTA
gi|95576                      :               AAATAAAAAAATCGTTCGAA---AACGTGCTTTG--------ATATGCACTA





Alignments
lowQualScore                  :         0               4         444           88888888          
lowQualScore                  :         .               .         ...           ........          
lowQualScore                  :         1               1         111           55555555          
consensus                     : ACGATCAAATAAAAAAATATAAAAATCGTTCGAA---AACGTGCTTTG--------ATATGCACTA
Reference ( family-888 )      : ACGATCAAATAAAAAAATATAAAAATCGTTCGAA---AACGTGCTTTG--------ATATGCACTA
gi|95560                      : ACGATCAAATAAAAAAATATAAAAATCGTTCGAA---AACGTGCTTTG--------ATATGCACTA
gi|95561                      : ACGATCAAATAAAAAAATATAAAAATCGTTCGAA---AACGTGCTTTG--------ATATGCACTA
gi|95562                      : ACGATCAAATAAAAAAATATAAAAATCGTTCGAA---GACGTGCTTTG--------ATATGCACTA
gi|95563                      : ACGATCAAATAAAAAAATATAAAAATCGTTCGAA---GACATGTTTTG--------ATATGCACTA
gi|95564                      : ATGATCAAATAAAAAAATAAAAAAATCGTTTGAA---AACGTACTTTG--------ATATTCACTA
gi|95565                      : ACGATCAACTAAAAAAATATAAAAATCGTTCGAA---AACGTGCTTTGATCTGTTAATATGCACTA
gi|95566                      : ACGATCAAATAAAAAAATATCCAA-TCGTTCGAC---AACGTGCTTTG--------ATATGCACTA
gi|95567                      : ACAGTTAACTAAAAAAATATAAAAATCGTTTGAA---AACATGCTTTG--------ATATGCACTA
gi|95568                      : ACGATCAAATAAAAAAATATCAAA-TCATTCGAC---AACATGCTTTA--------ATATGCACTA
gi|95569                      : ACGATCAA-CAAAAAAATATAAAA-TCGTTCGAC---AACGTGCTTTG--------ATGTGCAC
gi|95570                      : ACAATCAAATAAAAAATCA----AATTGTTCGAC---AACATGCTTTG--------ATATGCACTA
gi|95571                      :  CAATCAAATAAAAAAATATAAAAATCGTTTGAA---AACATGCTTTG--------ATATGCACTA
gi|95572                      :  CGATCAAATAAAAAA-TATCAAA-TC-TTCAAC---AACATGCTTTG--------ATATGCACTA
gi|95573                      :  CGATCAACTAAAAAAATATATAATTCATTCGAA---TACGTGCTTTG--------AAGTGCAC
gi|95574                      :   GATCAAATAAAAAAATATAAAAATCGTTCGAA---AACGTGCTTTG--------ATATGCACTA
gi|95575                      :   GATCAACTAAAAAAATATAAAAATTGTTTGAATTTAACGTGCTTTG--------ATATGCACTA
gi|95576                      :               AAATAAAAAAATCGTTCGAA---AACGTGCTTTG--------ATATGCACTA


blockSeqs                     :                         A         TTT           ATCTGTTA
blockSeqs                     :                         A         .             .       
blockSeqs                     :                         A         .             .       
blockSeqs                     :                         A         .             .       
blockSeqs                     :                         A         .             .       
blockSeqs                     :                         A         .             .       
blockSeqs                     :                         A         .             .       
blockSeqs                     :                         A         .             .       
blockSeqs                     :                         T         .             .       
blockSeqs                     :                         A         .             .       
blockSeqs                     :                         A         .             .       
blockSeqs                     :                         A         .             .       
blockSeqs                     :                         .         .             .       
blockSeqs                     :                         .         .             .       
blockSeqs                     :                         .         .             .       
blockSeqs                     :                         .         .             .       


blockSeqCons                  : 
originalCons                  : ACGATCAAATAAAAAAATATAAAAATCGTTCGAA---AACGTGCTTTG--------ATATGCACTA
finalCons                     : ACGATCAAATAAAAAAATATAAAAATCGTTCGAA---AACGTGCTTTG--------ATATGCACTA





Alignments
lowQualScore                  :         0               4         444           88888888          
lowQualScore                  :         .               .         ...           ........          
lowQualScore                  :         1               1         111           55555555          
consensus                     : ACGATCAAATAAAAAAATATAAAAATCGTTCGAA---AACGTGCTTTG--------ATATGCACTA
Reference ( family-888 )      : ACGATCAAATAAAAAAATATAAAAATCGTTCGAA---AACGTGCTTTG--------ATATGCACTA
gi|95560                      : ACGATCAAATAAAAAAATATAAAAATCGTTCGAA---AACGTGCTTTG--------ATATGCACTA
gi|95561                      : ACGATCAAATAAAAAAATATAAAAATCGTTCGAA---AACGTGCTTTG--------ATATGCACTA
gi|95562                      : ACGATCAAATAAAAAAATATAAAAATCGTTCGAA---GACGTGCTTTG--------ATATGCACTA
gi|95563                      : ACGATCAAATAAAAAAATATAAAAATCGTTCGAA---GACATGTTTTG--------ATATGCACTA
gi|95564                      : ATGATCAAATAAAAAAATAAAAAAATCGTTTGAA---AACGTACTTTG--------ATATTCACTA
gi|95565                      : ACGATCAACTAAAAAAATATAAAAATCGTTCGAA---AACGTGCTTTGATCTGTTAATATGCACTA
gi|95566                      : ACGATCAAATAAAAAAATATCCAA-TCGTTCGAC---AACGTGCTTTG--------ATATGCACTA
gi|95567                      : ACAGTTAACTAAAAAAATATAAAAATCGTTTGAA---AACATGCTTTG--------ATATGCACTA
gi|95568                      : ACGATCAAATAAAAAAATATCAAA-TCATTCGAC---AACATGCTTTA--------ATATGCACTA
gi|95569                      : ACGATCAA-CAAAAAAATATAAAA-TCGTTCGAC---AACGTGCTTTG--------ATGTGCAC
gi|95570                      : ACAATCAAATAAAAAATCA----AATTGTTCGAC---AACATGCTTTG--------ATATGCACTA
gi|95571                      :  CAATCAAATAAAAAAATATAAAAATCGTTTGAA---AACATGCTTTG--------ATATGCACTA
gi|95572                      :  CGATCAAATAAAAAA-TATCAAA-TC-TTCAAC---AACATGCTTTG--------ATATGCACTA
gi|95573                      :  CGATCAACTAAAAAAATATATAATTCATTCGAA---TACGTGCTTTG--------AAGTGCAC
gi|95574                      :   GATCAAATAAAAAAATATAAAAATCGTTCGAA---AACGTGCTTTG--------ATATGCACTA
gi|95575                      :   GATCAACTAAAAAAATATAAAAATTGTTTGAATTTAACGTGCTTTG--------ATATGCACTA
gi|95576                      :               AAATAAAAAAATCGTTCGAA---AACGTGCTTTG--------ATATGCACTA