lowQualScore : 1 111 2 2 111 111 1111111
lowQualScore : 7 2 99 2 777 6 6 1 0 3 777777 5 6 1 2 4 000 66 5 5 6 0 222 5 33 2 666 5 2222222 7 6 7
lowQualScore : . . .. . ... . . . . . ...... . . . . . ... .. . . . . ... . .. . ... . ....... . . .
lowQualScore : 0 2 00 7 333 7 7 1 2 4 222222 6 1 6 5 1 222 55 0 1 1 4 111 6 44 5 999 0 2222222 7 6 3
consensus : AAGGGCCATAACTCCCGAACGGGTNGAGCAAATCCAAGATTTGTTT-CTTCCTCCACAACTAAGC-TTGGT------ACCAGTCACCCCTGTAAAGTTTNAN--TNAA-TTCCGGCCAATAGTTGCTGAGAAATNGCG--ATC-AC---AAAAA-T-----GTTGCACGGACGGACGGACGGACG
Reference ( gi|5394 ) : AAGGGCCATAACTCCAGAACGGGTTAAGCAATTCCAAGATTTGTTT-CTTCCTCCACAACTAAGCATTAGT------AGTAGTAATCCCTG-AAAGTTTGAA--TCGA-TTTCATCCAATAATGAATGAGGAGTTGCG--GTC-AC---AAAAA-T-----GTTGCACGGACGCACGCACGGACG
gi|5397 : AAGGGCCATAACTCCAGAACGGGTTGAGCAATTCCAAGATTTGTTT-CTTCCTCCACAATTCAGCATTAGT------AGTAGTAATCCCTG-ACAGTTTGAA--TCGA-TTCCATCTAATAATGAATGAGGAGTTGCG--GTC-AC---AAAAA-T-----GTTGCACGGACGCACGCACGGACG
gi|5393 : AAGGGCCATAACTCCAGAACGGGTTGGGCAAATCCAAGATTTGTTT-CTTCCTCCACAACTAAGCATTAGTAGTAGTAGTAGTAATCCCTG-AAAGTTTGAA--TCGA-TTTCATCCAGTAATGAATGAGGAGTTGCG--GTC-AC---AAAAA-T-----G-TGCAC
gi|5392 : AAGGGCCATAACTCCCGAACAGGTGGAGCAAATCCAA--TTTGTTTTCTTTCTGCACAACTAACCATCGGT------AGTAGTAATCCCTG-AAAGTTTGAA--TCAA-TTCCGTCCAATAATGAATGAGGAATTGCG--GTC-AC---AAAAA-T-----GTTGCACGGACACACGCACGGACG
gi|5395 : AAGGGCCATAACTCCCGAACAGGTGGAGCAAATCCA---TTTTTTT-CTTTCTGCACAACTAGGCATCGGT------AGTAGTAATCCCTG-AAAGTTTGAA--TTAA-TTCCGTCCAATAATGAATGAAGAGTTGCA--GTC-ACAAAAAAAA-T-----GCTGCACGTACGCACGCACGGACG
gi|5396 : AAGGGCCATAACTCCCGAACAGGTGGAGCAAATCCAT--TTTTTTT-CTTTCTGCACAACTAGGCATCGGT------AGTAGTAATCCCTG-AAAGTTTGAA--TTAA-TTCCGTCCAATAATGAATGAAGAGTTGCGGTGTCAAA---AAAAA-A-----GTTGCACGGACGCACGCACGGACG
gi|5398 : AAGGGCCATAACT-----------TGAGCAAATCCAAGATTT-TGT-CTTCCTCCACAACAAAGCATTAGT------AGTAGTAATCCCTG-AAAGTTTGAA--TCGA-TTCCATCCAATAATGAATGAGGAGTTGCG--GTC-AC---AAAAA-T-----G-TGCA
gi|5399 : CTGCACAACTTTGC-TTGGT------ACCAGTCACCCTTGTAAAGTTTCA---TCGAATTCCAGCCAATGGTTGCTGAGAAATAGCG--ATC-AC---AAAAT-T-----TGTACACAGACAAACTGACTGAC
gi|5400 : TCCACAACTGAGC-TTGGT------ACTAGTCACCCTTGTGAAGTTTCAT--TGAA-TTCTGGCCAATGGTTGTTGAGAAAAAGTG--ATC-AC---AAAAATT-----GTT-CACAGACAGATTGACGGAC
gi|5401 : TCCATAACTAAGC-TTGGT------ACTGGTCA-CCCT---ATGTTTCAC--TGAA-TTCCGGCAAATAGTTGCTGAGAAATAGCT--ATC-AC---AAAAA-T-----TGTCCACAGACGGACTGACAGACG
gi|5402 : CGCAACTAAGC-CTAGT------ACCAGTCACCCCTGTAAAGTTTCAC--TGAA-TTCCGACAAATCGTTGCTGAGAAATAGCG--ATC-ACA--AAAAA-T-----GTC-CACAGACGGATGGACGGAC
gi|5403 : CACAACTAAGC-TTGGT------ACCAGTCACCTTTGTGAAGTTTCAT--TGAA-TTCCAGCCAATAGTTGCTGAGAAATAGTG--ATC-AC---AAAAA-T-----TGTCCACAGACGGACCGACTGAC
gi|5404 : CACAACTAGGC-TTGGT------ACCAGTCGCTCTTGTAAAGTTTTAT--TGAA-TTCCAGCCAATGGTTGCTGAGAAGTAGCG--ATC-AC---AAAAA-T-----TGTCCACAGACAGATGGATGGATG
gi|5405 : CACAACTAGGCTTT-GA------ATCAGTCATCATTGTGAAGCT-GAACATTGAATTCCGGCCAATGGTTGCTGAGAAATTGCG--ATC-AC---AAAAA-T-----TGTCCACAGACGGACGGACGGACG
gi|5406 : CACAACTAGGC-TTGGT------ACCAGTTGCCCATGTGAAGTTTTAT--TGAA-TTCCAGCCAATGGTTGCTGAGAAACAGCG--ATC-AC---AAAAA-TTTCCCATTG-ACGGACCTACCGACAGACG
gi|5407 : CACAACTAAGC-TTGGT------ACCAGTCACCTTTGTGAAGTTTCAT--TGAA-TTCCAGCCAATAGTTGCTGAAAAACAGTG--ATC-AC---AAAAA-T-----
gi|5408 : CAGAACTAGGC-TCAGT------ACCAGTCACCCTTGTAAAGTTTCAT--TGAA-TTCTGGCAAATGGTTGCTGAGAAATAGAG--ATC-AC---AAAAATT-----GTT-CACAGACAGACGGAC
Alignments
lowQualScore : 1 1 1111111
lowQualScore : 4 0 1 55 4 5 6 666666 1 1 1 1 1 444 1 1 0 1 1 33 2 666 4 0000000 6 1
lowQualScore : . . . .. . . . ...... . . . . . ... . . . . . .. . ... . ....... . .
lowQualScore : 3 4 0 77 3 7 5 888888 2 2 0 2 0 222 0 2 9 2 0 22 4 555 7 3333333 6 9
consensus : AAGGGCCATAACTCCNGAACGGGTTGAGCAAATCCAAGATTTGTTT-CTTCCTCCACAACTAAGCAT------TGGTACCAGTCACCCCTGTAAAGTTTNAN--TGAATTCCGGCCAATAGTTGCTGAGAAATNGCG--ATC-AC---AAAAA-T-----GTTGCACGGACGGACGGACGGACG
Reference ( family-887 ) : AAGGGCCATAACTCCCGAACGGGTNGAGCAAATCCAAGATTTGTTT-CTTCCTCCACAACTAAGC-T------TGGTACCAGTCACCCCTGTAAAGTTTNAN--TNAATTCCGGCCAATAGTTGCTGAGAAATNGCG--ATC-AC---AAAAA-T-----GTTGCACGGACGGACGGACGGACG
gi|5392 : AAGGGCCATAACTCCCGAACAGGTGGAGCAAATCCAA--TTTGTTTTCTTTCTGCACAACTAACCAT------CGGTAGTAGTAATCCCTG-AAAGTTTGAA--TCAATTCCGTCCAATAATGAATGAGGAATTGCG--GTC-AC---AAAAA-T-----GTTGCACGGACACACGCACGGACG
gi|5393 : AAGGGCCATAACTCCAGAACGGGTTGGGCAAATCCAAGATTTGTTT-CTTCCTCCACAACTAAGCATTAGTAGTAGTAGTAGTAATCCCTG-AAAGTTTGAA--TCGATTTCATCCAGTAATGAATGAGGAGTTGCG--GTC-AC---AAAAA-T-----G-TGCAC
gi|5394 : AAGGGCCATAACTCCAGAACGGGTTAAGCAATTCCAAGATTTGTTT-CTTCCTCCACAACTAAGCAT------TAGTAGTAGTAATCCCTG-AAAGTTTGAA--TCGATTTCATCCAATAATGAATGAGGAGTTGCG--GTC-AC---AAAAA-T-----GTTGCACGGACGCACGCACGGACG
gi|5395 : AAGGGCCATAACTCCCGAACAGGTGGAGCAAATCC---ATTTTTTT-CTTTCTGCACAACTAGGCAT------CGGTAGTAGTAATCCCTG-AAAGTTTGAA--TTAATTCCGTCCAATAATGAATGAAGAGTTGCA--GTC-ACAAAAAAAA-T-----GCTGCACGTACGCACGCACGGACG
gi|5396 : AAGGGCCATAACTCCCGAACAGGTGGAGCAAATCCA--TTTTTTTT-CTTTCTGCACAACTAGGCAT------CGGTAGTAGTAATCCCTG-AAAGTTTGAA--TTAATTCCGTCCAATAATGAATGAAGAGTTGCGGTGTCAAA---AAAAA-A-----GTTGCACGGACGCACGCACGGACG
gi|5397 : AAGGGCCATAACTCCAGAACGGGTTGAGCAATTCCAAGATTTGTTT-CTTCCTCCACAATTCAGCAT------TAGTAGTAGTAATCCCTG-ACAGTTTGAA--TCGATTCCATCTAATAATGAATGAGGAGTTGCG--GTC-AC---AAAAA-T-----GTTGCACGGACGCACGCACGGACG
gi|5398 : AAGGGCCATAACT-----------TGAGCAAATCCAAGATTT-TGT-CTTCCTCCACAACAAAGCAT------TAGTAGTAGTAATCCCTG-AAAGTTTGAA--TCGATTCCATCCAATAATGAATGAGGAGTTGCG--GTC-AC---AAAAA-T-----G-TGCA
gi|5399 : CTGCACAACTTTGC-T------TGGTACCAGTCACCCTTGTAAAGTTTCAT--CGAATTCCAGCCAATGGTTGCTGAGAAATAGCG--ATC-AC---AAAAT-T-----TGTACACAGACAAACTGACTGAC
gi|5400 : TCCACAACTGAGC-T------TGGTACTAGTCACCCTTGTGAAGTTTCAT--TGAATTCTGGCCAATGGTTGTTGAGAAAAAGTG--ATC-AC---AAAAATT-----GTT-CACAGACAGATTGACGGAC
gi|5401 : TCCATAACTAAGC-T------TGGTACTGGTCACCC-TAT---GTTTCAC--TGAATTCCGGCAAATAGTTGCTGAGAAATAGCT--ATC-AC---AAAAA-T-----TGTCCACAGACGGACTGACAGACG
gi|5402 : CGCAACTAAGC-C------TAGTACCAGTCACCCCTGTAAAGTTTCAC--TGAATTCCGACAAATCGTTGCTGAGAAATAGCG--ATC-ACA--AAAAA-T-----GTC-CACAGACGGATGGACGGAC
gi|5403 : CACAACTAAGC-T------TGGTACCAGTCACCTTTGTGAAGTTTCAT--TGAATTCCAGCCAATAGTTGCTGAGAAATAGTG--ATC-AC---AAAAA-T-----TGTCCACAGACGGACCGACTGAC
gi|5404 : CACAACTAGGC-T------TGGTACCAGTCGCTCTTGTAAAGTTTTAT--TGAATTCCAGCCAATGGTTGCTGAGAAGTAGCG--ATC-AC---AAAAA-T-----TGTCCACAGACAGATGGATGGATG
gi|5405 : CACAACTAGGC-T------TTGAATCAGTCATCATTGTGAAGCTGAACATTGAATTCCGGCCAATGGTTGCTGAGAAATTGCG--ATC-AC---AAAAA-T-----TGTCCACAGACGGACGGACGGACG
gi|5406 : CACAACTAGGC-T------TGGTACCAGTTGCCCATGTGAAGTTTTAT--TGAATTCCAGCCAATGGTTGCTGAGAAACAGCG--ATC-AC---AAAAA-TTTCCCATTG-ACGGACCTACCGACAGACG
gi|5407 : CACAACTAAGC-T------TGGTACCAGTCACCTTTGTGAAGTTTCAT--TGAATTCCAGCCAATAGTTGCTGAAAAACAGTG--ATC-AC---AAAAA-T-----
gi|5408 : CAGAACTAGGC-T------CAGTACCAGTCACCCTTGTAAAGTTTCAT--TGAATTCTGGCAAATGGTTGCTGAGAAATAGAG--ATC-AC---AAAAATT-----GTT-CACAGACAGACGGAC
Alignments
lowQualScore : 11 1 1 1111111
lowQualScore : 3 0 1 99 00 8 666666 1 1 1 1 1 444 0 1 0 1 1 33 2 666 4 0000000 6 1
lowQualScore : . . . .. .. . ...... . . . . . ... . . . . . .. . ... . ....... . .
lowQualScore : 0 4 3 11 00 5 888888 2 2 0 2 0 222 3 2 9 2 0 22 4 555 7 3333333 6 9
consensus : AAGGGCCATAACTCCNGAACGGGTTGAGCAAATCCAAGATTTG-TTTCTTCCTCCACAACTAAGCAT------TGGTACCAGTCACCCCTGTAAAGTTTNAN--TGAATTCCGGCCAATAGTTGCTGAGAAATNGCG--ATC-AC---AAAAA-T-----GTTGCACGGACGGACGGACGGACG
Reference ( family-887 ) : AAGGGCCATAACTCCNGAACGGGTTGAGCAAATCCAAGATTTG-TTTCTTCCTCCACAACTAAGCAT------TGGTACCAGTCACCCCTGTAAAGTTTNAN--TGAATTCCGGCCAATAGTTGCTGAGAAATNGCG--ATC-AC---AAAAA-T-----GTTGCACGGACGGACGGACGGACG
gi|5392 : AAGGGCCATAACTCCCGAACAGGTGGAGCAAATCCA--ATTTGTTTTCTTTCTGCACAACTAACCAT------CGGTAGTAGTAATCCCTG-AAAGTTTGAA--TCAATTCCGTCCAATAATGAATGAGGAATTGCG--GTC-AC---AAAAA-T-----GTTGCACGGACACACGCACGGACG
gi|5393 : AAGGGCCATAACTCCAGAACGGGTTGGGCAAATCCAAGATTTG-TTTCTTCCTCCACAACTAAGCATTAGTAGTAGTAGTAGTAATCCCTG-AAAGTTTGAA--TCGATTTCATCCAGTAATGAATGAGGAGTTGCG--GTC-AC---AAAAA-T-----G-TGCAC
gi|5394 : AAGGGCCATAACTCCAGAACGGGTTAAGCAATTCCAAGATTTG-TTTCTTCCTCCACAACTAAGCAT------TAGTAGTAGTAATCCCTG-AAAGTTTGAA--TCGATTTCATCCAATAATGAATGAGGAGTTGCG--GTC-AC---AAAAA-T-----GTTGCACGGACGCACGCACGGACG
gi|5395 : AAGGGCCATAACTCCCGAACAGGTGGAGCAAATCC---ATTTT-TTTCTTTCTGCACAACTAGGCAT------CGGTAGTAGTAATCCCTG-AAAGTTTGAA--TTAATTCCGTCCAATAATGAATGAAGAGTTGCA--GTC-ACAAAAAAAA-T-----GCTGCACGTACGCACGCACGGACG
gi|5396 : AAGGGCCATAACTCCCGAACAGGTGGAGCAAATCCA--TTTTT-TTTCTTTCTGCACAACTAGGCAT------CGGTAGTAGTAATCCCTG-AAAGTTTGAA--TTAATTCCGTCCAATAATGAATGAAGAGTTGCGGTGTCAAA---AAAAA-A-----GTTGCACGGACGCACGCACGGACG
gi|5397 : AAGGGCCATAACTCCAGAACGGGTTGAGCAATTCCAAGATTTG-TTTCTTCCTCCACAATTCAGCAT------TAGTAGTAGTAATCCCTG-ACAGTTTGAA--TCGATTCCATCTAATAATGAATGAGGAGTTGCG--GTC-AC---AAAAA-T-----GTTGCACGGACGCACGCACGGACG
gi|5398 : AAGGGCCATAACT-----------TGAGCAAATCCAAGATTT--TGTCTTCCTCCACAACAAAGCAT------TAGTAGTAGTAATCCCTG-AAAGTTTGAA--TCGATTCCATCCAATAATGAATGAGGAGTTGCG--GTC-AC---AAAAA-T-----G-TGCA
gi|5399 : CTGCACAACTTTGC-T------TGGTACCAGTCACCCTTGTAAAGTTTCAT--CGAATTCCAGCCAATGGTTGCTGAGAAATAGCG--ATC-AC---AAAAT-T-----TGTACACAGACAAACTGACTGAC
gi|5400 : TCCACAACTGAGC-T------TGGTACTAGTCACCCTTGTGAAGTTTCAT--TGAATTCTGGCCAATGGTTGTTGAGAAAAAGTG--ATC-AC---AAAAATT-----GTT-CACAGACAGATTGACGGAC
gi|5401 : TCCATAACTAAGC-T------TGGTACTGGTCACCC-TAT---GTTTCAC--TGAATTCCGGCAAATAGTTGCTGAGAAATAGCT--ATC-AC---AAAAA-T-----TGTCCACAGACGGACTGACAGACG
gi|5402 : CGCAACTAAGC-C------TAGTACCAGTCACCCCTGTAAAGTTTCAC--TGAATTCCGACAAATCGTTGCTGAGAAATAGCG--ATC-ACA--AAAAA-T-----GTC-CACAGACGGATGGACGGAC
gi|5403 : CACAACTAAGC-T------TGGTACCAGTCACCTTTGTGAAGTTTCAT--TGAATTCCAGCCAATAGTTGCTGAGAAATAGTG--ATC-AC---AAAAA-T-----TGTCCACAGACGGACCGACTGAC
gi|5404 : CACAACTAGGC-T------TGGTACCAGTCGCTCTTGTAAAGTTTTAT--TGAATTCCAGCCAATGGTTGCTGAGAAGTAGCG--ATC-AC---AAAAA-T-----TGTCCACAGACAGATGGATGGATG
gi|5405 : CACAACTAGGCTT------TGA-ATCAGTCATCATTGTGAAGCTGAACATTGAATTCCGGCCAATGGTTGCTGAGAAATTGCG--ATC-AC---AAAAA-T-----TGTCCACAGACGGACGGACGGACG
gi|5406 : CACAACTAGGC-T------TGGTACCAGTTGCCCATGTGAAGTTTTAT--TGAATTCCAGCCAATGGTTGCTGAGAAACAGCG--ATC-AC---AAAAA-TTTCCCATTG-ACGGACCTACCGACAGACG
gi|5407 : CACAACTAAGC-T------TGGTACCAGTCACCTTTGTGAAGTTTCAT--TGAATTCCAGCCAATAGTTGCTGAAAAACAGTG--ATC-AC---AAAAA-T-----
gi|5408 : CAGAACTAGGC-T------CAGTACCAGTCACCCTTGTAAAGTTTCAT--TGAATTCTGGCAAATGGTTGCTGAGAAATAGAG--ATC-AC---AAAAATT-----GTT-CACAGACAGACGGAC
Alignments
lowQualScore : 11 1 1 1111111
lowQualScore : 3 0 1 99 00 8 666666 1 1 1 1 1 444 0 1 0 1 1 33 2 666 4 0000000 6 1
lowQualScore : . . . .. .. . ...... . . . . . ... . . . . . .. . ... . ....... . .
lowQualScore : 0 4 3 11 00 5 888888 2 2 0 2 0 222 3 2 9 2 0 22 4 555 7 3333333 6 9
consensus : AAGGGCCATAACTCCNGAACGGGTTGAGCAAATCCAAGATTTG-TTTCTTCCTCCACAACTAAGCAT------TGGTACCAGTCACCCCTGTAAAGTTTNAN--TGAATTCCGGCCAATAGTTGCTGAGAAATNGCG--ATC-AC---AAAAA-T-----GTTGCACGGACGGACGGACGGACG
Reference ( family-887 ) : AAGGGCCATAACTCCNGAACGGGTTGAGCAAATCCAAGATTTG-TTTCTTCCTCCACAACTAAGCAT------TGGTACCAGTCACCCCTGTAAAGTTTNAN--TGAATTCCGGCCAATAGTTGCTGAGAAATNGCG--ATC-AC---AAAAA-T-----GTTGCACGGACGGACGGACGGACG
gi|5392 : AAGGGCCATAACTCCCGAACAGGTGGAGCAAATCCA--ATTTGTTTTCTTTCTGCACAACTAACCAT------CGGTAGTAGTAATCCCTG-AAAGTTTGAA--TCAATTCCGTCCAATAATGAATGAGGAATTGCG--GTC-AC---AAAAA-T-----GTTGCACGGACACACGCACGGACG
gi|5393 : AAGGGCCATAACTCCAGAACGGGTTGGGCAAATCCAAGATTTG-TTTCTTCCTCCACAACTAAGCATTAGTAGTAGTAGTAGTAATCCCTG-AAAGTTTGAA--TCGATTTCATCCAGTAATGAATGAGGAGTTGCG--GTC-AC---AAAAA-T-----G-TGCAC
gi|5394 : AAGGGCCATAACTCCAGAACGGGTTAAGCAATTCCAAGATTTG-TTTCTTCCTCCACAACTAAGCAT------TAGTAGTAGTAATCCCTG-AAAGTTTGAA--TCGATTTCATCCAATAATGAATGAGGAGTTGCG--GTC-AC---AAAAA-T-----GTTGCACGGACGCACGCACGGACG
gi|5395 : AAGGGCCATAACTCCCGAACAGGTGGAGCAAATCC---ATTTT-TTTCTTTCTGCACAACTAGGCAT------CGGTAGTAGTAATCCCTG-AAAGTTTGAA--TTAATTCCGTCCAATAATGAATGAAGAGTTGCA--GTC-ACAAAAAAAA-T-----GCTGCACGTACGCACGCACGGACG
gi|5396 : AAGGGCCATAACTCCCGAACAGGTGGAGCAAATCCA--TTTTT-TTTCTTTCTGCACAACTAGGCAT------CGGTAGTAGTAATCCCTG-AAAGTTTGAA--TTAATTCCGTCCAATAATGAATGAAGAGTTGCGGTGTCAAA---AAAAA-A-----GTTGCACGGACGCACGCACGGACG
gi|5397 : AAGGGCCATAACTCCAGAACGGGTTGAGCAATTCCAAGATTTG-TTTCTTCCTCCACAATTCAGCAT------TAGTAGTAGTAATCCCTG-ACAGTTTGAA--TCGATTCCATCTAATAATGAATGAGGAGTTGCG--GTC-AC---AAAAA-T-----GTTGCACGGACGCACGCACGGACG
gi|5398 : AAGGGCCATAACT-----------TGAGCAAATCCAAGATTT--TGTCTTCCTCCACAACAAAGCAT------TAGTAGTAGTAATCCCTG-AAAGTTTGAA--TCGATTCCATCCAATAATGAATGAGGAGTTGCG--GTC-AC---AAAAA-T-----G-TGCA
gi|5399 : CTGCACAACTTTGC-T------TGGTACCAGTCACCCTTGTAAAGTTTCAT--CGAATTCCAGCCAATGGTTGCTGAGAAATAGCG--ATC-AC---AAAAT-T-----TGTACACAGACAAACTGACTGAC
gi|5400 : TCCACAACTGAGC-T------TGGTACTAGTCACCCTTGTGAAGTTTCAT--TGAATTCTGGCCAATGGTTGTTGAGAAAAAGTG--ATC-AC---AAAAATT-----GTT-CACAGACAGATTGACGGAC
gi|5401 : TCCATAACTAAGC-T------TGGTACTGGTCACCC-TAT---GTTTCAC--TGAATTCCGGCAAATAGTTGCTGAGAAATAGCT--ATC-AC---AAAAA-T-----TGTCCACAGACGGACTGACAGACG
gi|5402 : CGCAACTAAGC-C------TAGTACCAGTCACCCCTGTAAAGTTTCAC--TGAATTCCGACAAATCGTTGCTGAGAAATAGCG--ATC-ACA--AAAAA-T-----GTC-CACAGACGGATGGACGGAC
gi|5403 : CACAACTAAGC-T------TGGTACCAGTCACCTTTGTGAAGTTTCAT--TGAATTCCAGCCAATAGTTGCTGAGAAATAGTG--ATC-AC---AAAAA-T-----TGTCCACAGACGGACCGACTGAC
gi|5404 : CACAACTAGGC-T------TGGTACCAGTCGCTCTTGTAAAGTTTTAT--TGAATTCCAGCCAATGGTTGCTGAGAAGTAGCG--ATC-AC---AAAAA-T-----TGTCCACAGACAGATGGATGGATG
gi|5405 : CACAACTAGGCTT------TGA-ATCAGTCATCATTGTGAAGCTGAACATTGAATTCCGGCCAATGGTTGCTGAGAAATTGCG--ATC-AC---AAAAA-T-----TGTCCACAGACGGACGGACGGACG
gi|5406 : CACAACTAGGC-T------TGGTACCAGTTGCCCATGTGAAGTTTTAT--TGAATTCCAGCCAATGGTTGCTGAGAAACAGCG--ATC-AC---AAAAA-TTTCCCATTG-ACGGACCTACCGACAGACG
gi|5407 : CACAACTAAGC-T------TGGTACCAGTCACCTTTGTGAAGTTTCAT--TGAATTCCAGCCAATAGTTGCTGAAAAACAGTG--ATC-AC---AAAAA-T-----
gi|5408 : CAGAACTAGGC-T------CAGTACCAGTCACCCTTGTAAAGTTTCAT--TGAATTCTGGCAAATGGTTGCTGAGAAATAGAG--ATC-AC---AAAAATT-----GTT-CACAGACAGACGGAC
blockSeqs : A T AG G A TAGTAG G A C T G CAT T A T GT A AAA T TTCCCAT G C
blockSeqs : A T AG G A . G A C T G A T A T . . A T GT G C
blockSeqs : C G AG T A . G A C T G A T A T . . . . GC G C
blockSeqs : C G AG T A . G A C T G A T A T . . . . GT G C
blockSeqs : A T . G A . G A C T G A T A T . . . . GT G A
blockSeqs : . T . . A . G A C T G A T A T . . . . TG G G
blockSeqs : T . C C T T C A G C A . . . . GT A G
blockSeqs : . . C C T T C T G T A . . . . TG C G
blockSeqs : . . C C C T C T G C A . . . . GT C G
blockSeqs : . . C C T T C C A C A . . . . TG C G
blockSeqs : . . C C T . C C G C A . . . . TG C G
blockSeqs : . . C C T . T T G C A . . . . TG G T
blockSeqs : . . T C A . A T G C T . . . . GT . G
blockSeqs : . . C T T . T T G C A . . . . G .
blockSeqs : . . C C T . C T G C A . . . . G .
blockSeqs : . . C C . . C T G C A . . . .
blockSeqCons : AG G*
originalCons : AAGGGCCATAACTCCNGAACGGGTTGAGCAAATCCAAGATTTG-TTTCTTCCTCCACAACTAAGCAT------TGGTACCAGTCACCCCTGTAAAGTTTNAN--TGAATTCCGGCCAATAGTTGCTGAGAAATNGCG--ATC-AC---AAAAA-T-----GTTGCACGGACGGACGGACGGACG
finalCons : AAGGGCCATAACTCCNGAACGGGTTGAGCAAATCCAAGATTTG-TTTCTTCCTCCACAACTAAGCAT------TGGTACCAGTCACCCCTGTAAAGTTTNAN--TGAATTCCGGCCAATAGTTGCTGAGAAATNGCG--ATC-AC---AAAAA-T-----GTTGCACGGACGGACGGACGGACG
Alignments
lowQualScore : 11 1 1 1111111
lowQualScore : 3 0 1 99 00 8 666666 1 1 1 1 1 444 0 1 0 1 1 33 2 666 4 0000000 6 1
lowQualScore : . . . .. .. . ...... . . . . . ... . . . . . .. . ... . ....... . .
lowQualScore : 0 4 3 11 00 5 888888 2 2 0 2 0 222 3 2 9 2 0 22 4 555 7 3333333 6 9
consensus : AAGGGCCATAACTCCNGAACGGGTTGAGCAAATCCAAGATTTG-TTTCTTCCTCCACAACTAAGCAT------TGGTACCAGTCACCCCTGTAAAGTTTNAN--TGAATTCCGGCCAATAGTTGCTGAGAAATNGCG--ATC-AC---AAAAA-T-----GTTGCACGGACGGACGGACGGACG
Reference ( family-887 ) : AAGGGCCATAACTCCNGAACGGGTTGAGCAAATCCAAGATTTG-TTTCTTCCTCCACAACTAAGCAT------TGGTACCAGTCACCCCTGTAAAGTTTNAN--TGAATTCCGGCCAATAGTTGCTGAGAAATNGCG--ATC-AC---AAAAA-T-----GTTGCACGGACGGACGGACGGACG
gi|5392 : AAGGGCCATAACTCCCGAACAGGTGGAGCAAATCCA--ATTTGTTTTCTTTCTGCACAACTAACCAT------CGGTAGTAGTAATCCCTG-AAAGTTTGAA--TCAATTCCGTCCAATAATGAATGAGGAATTGCG--GTC-AC---AAAAA-T-----GTTGCACGGACACACGCACGGACG
gi|5393 : AAGGGCCATAACTCCAGAACGGGTTGGGCAAATCCAAGATTTG-TTTCTTCCTCCACAACTAAGCATTAGTAGTAGTAGTAGTAATCCCTG-AAAGTTTGAA--TCGATTTCATCCAGTAATGAATGAGGAGTTGCG--GTC-AC---AAAAA-T-----G-TGCAC
gi|5394 : AAGGGCCATAACTCCAGAACGGGTTAAGCAATTCCAAGATTTG-TTTCTTCCTCCACAACTAAGCAT------TAGTAGTAGTAATCCCTG-AAAGTTTGAA--TCGATTTCATCCAATAATGAATGAGGAGTTGCG--GTC-AC---AAAAA-T-----GTTGCACGGACGCACGCACGGACG
gi|5395 : AAGGGCCATAACTCCCGAACAGGTGGAGCAAATCC---ATTTT-TTTCTTTCTGCACAACTAGGCAT------CGGTAGTAGTAATCCCTG-AAAGTTTGAA--TTAATTCCGTCCAATAATGAATGAAGAGTTGCA--GTC-ACAAAAAAAA-T-----GCTGCACGTACGCACGCACGGACG
gi|5396 : AAGGGCCATAACTCCCGAACAGGTGGAGCAAATCCA--TTTTT-TTTCTTTCTGCACAACTAGGCAT------CGGTAGTAGTAATCCCTG-AAAGTTTGAA--TTAATTCCGTCCAATAATGAATGAAGAGTTGCGGTGTCAAA---AAAAA-A-----GTTGCACGGACGCACGCACGGACG
gi|5397 : AAGGGCCATAACTCCAGAACGGGTTGAGCAATTCCAAGATTTG-TTTCTTCCTCCACAATTCAGCAT------TAGTAGTAGTAATCCCTG-ACAGTTTGAA--TCGATTCCATCTAATAATGAATGAGGAGTTGCG--GTC-AC---AAAAA-T-----GTTGCACGGACGCACGCACGGACG
gi|5398 : AAGGGCCATAACT-----------TGAGCAAATCCAAGATTT--TGTCTTCCTCCACAACAAAGCAT------TAGTAGTAGTAATCCCTG-AAAGTTTGAA--TCGATTCCATCCAATAATGAATGAGGAGTTGCG--GTC-AC---AAAAA-T-----G-TGCA
gi|5399 : CTGCACAACTTTGC-T------TGGTACCAGTCACCCTTGTAAAGTTTCAT--CGAATTCCAGCCAATGGTTGCTGAGAAATAGCG--ATC-AC---AAAAT-T-----TGTACACAGACAAACTGACTGAC
gi|5400 : TCCACAACTGAGC-T------TGGTACTAGTCACCCTTGTGAAGTTTCAT--TGAATTCTGGCCAATGGTTGTTGAGAAAAAGTG--ATC-AC---AAAAATT-----GTT-CACAGACAGATTGACGGAC
gi|5401 : TCCATAACTAAGC-T------TGGTACTGGTCACCC-TAT---GTTTCAC--TGAATTCCGGCAAATAGTTGCTGAGAAATAGCT--ATC-AC---AAAAA-T-----TGTCCACAGACGGACTGACAGACG
gi|5402 : CGCAACTAAGC-C------TAGTACCAGTCACCCCTGTAAAGTTTCAC--TGAATTCCGACAAATCGTTGCTGAGAAATAGCG--ATC-ACA--AAAAA-T-----GTC-CACAGACGGATGGACGGAC
gi|5403 : CACAACTAAGC-T------TGGTACCAGTCACCTTTGTGAAGTTTCAT--TGAATTCCAGCCAATAGTTGCTGAGAAATAGTG--ATC-AC---AAAAA-T-----TGTCCACAGACGGACCGACTGAC
gi|5404 : CACAACTAGGC-T------TGGTACCAGTCGCTCTTGTAAAGTTTTAT--TGAATTCCAGCCAATGGTTGCTGAGAAGTAGCG--ATC-AC---AAAAA-T-----TGTCCACAGACAGATGGATGGATG
gi|5405 : CACAACTAGGCTT------TGA-ATCAGTCATCATTGTGAAGCTGAACATTGAATTCCGGCCAATGGTTGCTGAGAAATTGCG--ATC-AC---AAAAA-T-----TGTCCACAGACGGACGGACGGACG
gi|5406 : CACAACTAGGC-T------TGGTACCAGTTGCCCATGTGAAGTTTTAT--TGAATTCCAGCCAATGGTTGCTGAGAAACAGCG--ATC-AC---AAAAA-TTTCCCATTG-ACGGACCTACCGACAGACG
gi|5407 : CACAACTAAGC-T------TGGTACCAGTCACCTTTGTGAAGTTTCAT--TGAATTCCAGCCAATAGTTGCTGAAAAACAGTG--ATC-AC---AAAAA-T-----
gi|5408 : CAGAACTAGGC-T------CAGTACCAGTCACCCTTGTAAAGTTTCAT--TGAATTCTGGCAAATGGTTGCTGAGAAATAGAG--ATC-AC---AAAAATT-----GTT-CACAGACAGACGGAC