lowQualScore : 1 111 1111 111111111 1111 11111111 1 11
lowQualScore : 4 55 2 1 1 444 6666 3 55 222222222 55 7777 0 3 77 7777 22222222 44 55 3 33 4 7 33 2 555 88 66 4 0
lowQualScore : . .. . . . ... .... . .. ......... .. .... . . .. .... ........ .. .. . .. . . .. . ... .. .. . .
lowQualScore : 0 55 3 8 8 222 3333 6 00 444444444 00 9999 2 3 99 1111 11111111 22 33 1 99 9 1 99 8 000 99 55 6 2
consensus : GTAAAACGTCATCATTG-TCAGTTCG--TTTTCAACATGTCGGTATATTCTTTCACGGATAAAAAGT-AAGTGT-C--TT-CTT--TAAAGAAA-A-------T-CGCTGATATGGTATTGAGTGTTTGCGTACATT-AT--TT----TA---T----TATTT--CCA-TT-CTGTTTCTAATGTAAACAAATCAAGGGAAGCAACTGCATAGCG--ACCTACAT-TTGAAACT--GAAAAGCAAA---TAAATATCTTAAAATACGACGTCAACGTCATAATGGCGCAAT
Reference ( gi|94297 ) : GTAAAACGTCATCATTG-TCAGTTTG--TTTTCAACATGTCGGTTTATTCTTTCACGGATAAAAAGA-AAGTGT-C--TT-CTT--TAAAGAAA-A-------T-CGCTGATATGGTGTTGAGTGTTTGTGTACATT-AT--TT----TA---T----TATTT--CCA-TT-CTGTTTCTAATGTAAACAAATCAAGGGAAGCAACTGCATAGCG--ACCTATAT-TTGAAACT--GAAAAGTAAA---TAAATATCTTAAAATTTGACGTTGATGTCATAATGGCGCAAT
gi|94296 : GTAAAGCGTCATCCTTT-TCAGTTTG--TTTTCAACTTGTCGGTATATTCTTTCACGGATAAAAAGT-AAGTGT-T--TT-CTT--TAAAGAAA-A-------T-CGCTGATATGGTATTGAGTGCTTGTGTATATT-AT--TT----AA---T----TATTT--CCA-TT-CTGTTTCTAATGTAAACAAATCAAGAGTAGCAACTGCATAGCG--ACCTACAT-TTGAAACT--GAAAAGTAAA---TAAATATCTTAAAATACGACGTCAACGTCATAATGACGCAAT
gi|94298 : GTAAAATGTCATCATTG-TCCGTTTG--TTTTCAACATGCCGGTATGTTCTTTCATGGATAAAAAGT-AAGTGT-C--TT-CTT--TAAAGAAT-A-------T-CGCTGATATGGTATTGAGTGTTTGTGTACATT-AC--TT----TA---T----TATTT--CCA-CT-CTGTTTCTAATGTAAACAAATCAAGGGAAGCAACTGCATAGCG--ACATACA--TTGAAACT--GAAAAGCAAA---TAAATATCTTAAAATACGACACCAACGTCATTATGGCGCAAT
gi|94299 : GTAAAACGTCATCAATG-TCATTTTG--CTTTTAACATGTCGATATATTCTTTCACGTATAAAAAAT-AAGTGT-C--TT-CTT--TAAAGAAA-A-------T-CGCTGATATGGCATTGAGTGTTTGTGTACATT-AT--TT----TA---T----TATTT--CCA-TT-CCG----------------ATCAACGGAAGCAACTGCACAGCG--ACCTACAT-TTGAAACT--GTTAAGCAAA---TAAATATCTTAAAAT
gi|94301 : GTAAAGCGTCATCATTG-TCAGTTCG--TTTTCA---CGTCAGTTTATTCTTTCACGGATAAAAAAATAAGTGTTC--TT-CTT--GAAAGAAA-A-------T-CGCTGATATGATATTTAGAGTTTGTATACAGT-AT--T-------------------T--CCA-TT-CTGTTATTAATGTAAACAAACCAAGGGAAGCAACTGTATAGCG--ACCTATAT-TTGAAACT--AAAAAGCATA---TAAATATATTAac
gi|94300 : GTGAAAC--CATTCTTGGTCAGTTTG--TTTTAAACATGTCGGTTCGTTCTTTTACG-----AAAAA-AAGTGT-TATTT-GTT--TAAA-AAG-G-------T-CGCTGATAT--TGT-AAGTGTTTGCGTACATT-TT--TTAGTATA---T----TATTT--CCC-TT-TTGTTTCTAATGTAAACAAATCGTGGGAAGCAACTGCATAGCG--ACCTACATACTAAAACT--GATAAGCAAA---TAAATATCTTAAAATACGAAGTCAACATCAGAATGGCACAAT
gi|94302 : GTAAAACGTCATCATTG-TCAGTTTG--TTTTCAGCATTTCGGAATGTTCTTTCACGGATAAAAAGT-AAAT
gi|94303 : GTAAAACATCATTATTG-TCA--TTGCATTTTCAACATGTCGGTACAGTCT--------TAAAAAAA-AATTGT-T--TT-TAT--TA
gi|94304 : TAAAACGTCATCATTG-TCAGGGCA--TTTTCAACATGTTGGTACATTCTTTCAAGGATAAAATAT-AAGTGTTC--TT-TGT--TAAAAAAA-AAATGTGTT-CA-TAATAAAATTTT-AGTAAGTGTGTACATT-AT--TT----TAG--TAAAATATTT--CCC-TT-CTGTTTCTAATGTAAACAAATCAAGGGAAGCAACTGCATAGCGTAATTTTTAT-T--AAACT--GAAAAGCAAA---TAAATATCTTAAAATACTACGTCAACATCAttt
gi|94305 : AAACGTCATCACTG-TCAGTTTG--TTTTCAACATATCGGTATATTCTTTCACGGATAAAAAGT-AAGTGT-T--TTTCTT--TAAAGTAA-C-------T-CGCATATACGGTATAAAGTGTTTGTGTATATT-AT--TT----TA---T----TATTT--CCA-TT-CTGTTTCTAATGTAAACAAAT-AAGGGAAGCAACTGCAT---------------TTGAAACT--GAAAAGCTAA---TAAATATCTTAAAATACGACGTCAACGTCATAATGGCGCAAT
gi|94306 : AACGTCATCACTG-TTAGTGCA--TTTTGA-----TTGGTACATTTTTT-------------G-AAGTGTTC--TT-CTT--TAAAATAA-T-------T-GGCTCATATGGTA---AGTATTTGCATACATT-AT--TT----TAGTTTAG--TATTT--CCC-TT-CTGTTTCTAATGTAAAAAAATCAAGGGAAACAACTGTACAGCG--ACCCACATATTAAAACT--GAAAAGCAAA---TAAATATTTTAAAATACAACGTCAACGTCAGAATGGTACAA
gi|94307 : ATTCTTTTATAGATAAAAAGT-GCGT-T-C--TT-CGT------GAAACA-------T--GTTGAAATA-TGATGAGTGTTTACAAACTTTCACG-TT----TA---T----AATTT--T---TTACT-TTTCCAATACAAAAAGATAAATGGAATCTACTACTCAGTT--ACTCGCATGTTAAAACTTAAAAAAATAAA---TAAATACCGTAAAATATCAAGTTAGCATCA
gi|94308 : ACGAATAAGGAAATAAGTGA-----T-CTTGGTAAAGAAA-A-------T--GCTGTTATGGTA---AGTGTCTAT--ACATT--T--TC----GA---T----TGTTTGTTCACTT-CCGTTTCCAA-GCAAACAAATCAAGG-AAGCAACTGCATTGC
gi|94309 : AAAAAA-A-------TACGCTGATATGGTA---AGTATTTGACTACATT-TTGGTT----TA---T----TATTT--CAT-TT-CCGCTTCCAATGTAAACAAATCTTGAGAAACAACTGCATAG-----CCCATACATTATAACT---AAAGACAAATATTAAGTATCTTGAAATATAAAATTAACGTCAAAACGGCGCAA
gi|94310 : ATATGGTATTGAGTGTTTGTGTTCATT-AT--TT----TA---T----TATTT--CCA-TT-CTGTTTCTAATGTAAACAAATCAAGAGAAGCAACTGCATAGCG--ACCTACAT-TTGAAACT--GAAAAGTAAA---TAAATAACTTAAAATACGACATTAATGTCATAATGGCGCAAT
gi|94311 : A---T----TATTT--CAC-TT-CCGTTTCCGATTTAAACAAATCAACACAAGCAACTGCAAAGCG--ACCCAAATGTTAAAACT--AAAAAGCAAA---ACAGTATCTTAAAATATCACGTTAACGTCA
gi|94312 : TGTTTCTAATATAAACAAATCAAAGGAAGCAAATGCATAGCG--ACCTACAT-TTGAAACT--GAAAAGCAAG---TAAATATCTTAAAATACGACGTCAACGTCATAATGGCGCAAT
gi|94313 : TACATAGCG--ACTCAGATATTAAAACT--GAAAAGCAAA---TAAATATCTTAAAAT
Alignments
lowQualScore : 1111 1111111 111 1111 1
lowQualScore : 3 0 1 0 3 3 0000 3 44 3 0000000 33 44 222 5 3 77 6666 5 2222 33 44 2 33 2 3 2 33 444
lowQualScore : . . . . . . .... . .. . ....... .. .. ... . . .. .... . .... .. .. . .. . . . .. ...
lowQualScore : 6 2 3 8 1 1 8888 3 66 3 8888888 88 22 999 6 1 33 5555 7 1111 99 33 9 77 7 3 7 77 777
consensus : GTAAAACGTCATCATTG-TCAGTTCGTTTTCAACATGTCGGTATATTCTTTCACGGATAAA-AAG-TAAGTGT-C--TT-CTT--TAAAGAAA-A-------T-CGCTGA--TATGGTATTGAGTGTTTGCGTACATT-AT--TT----TA-T----TATTT--CCA-TT-CTGTTTCTAATGTAAACAAATCAAGGGAAGCAACTGCATAGCG--ACC-TACAT-TTGA-AACT--GAAAAGCAAA---TAAATATCTTAAAATACGACGTCAACGTCATAATGGCGCAAT
Reference ( family-871 ) : GTAAAACGTCATCATTG-TCAGTTCGTTTTCAACATGTCGGTATATTCTTTCACGGATAAA-AAG-TAAGTGT-C--TT-CTT--TAAAGAAA-A-------T-CGCTGA--TATGGTATTGAGTGTTTGCGTACATT-AT--TT----TA-T----TATTT--CCA-TT-CTGTTTCTAATGTAAACAAATCAAGGGAAGCAACTGCATAGCG--ACC-TACAT-TTGA-AACT--GAAAAGCAAA---TAAATATCTTAAAATACGACGTCAACGTCATAATGGCGCAAT
gi|94296 : GTAAAGCGTCATCCTTT-TCAGTTTGTTTTCAACTTGTCGGTATATTCTTTCACGGATAAA-AAG-TAAGTGT-T--TT-CTT--TAAAGAAA-A-------T-CGCTGA--TATGGTATTGAGTGCTTGTGTATATT-AT--TT----AA-T----TATTT--CCA-TT-CTGTTTCTAATGTAAACAAATCAAGAGTAGCAACTGCATAGCG--ACC-TACAT-TTGA-AACT--GAAAAGTAAA---TAAATATCTTAAAATACGACGTCAACGTCATAATGACGCAAT
gi|94297 : GTAAAACGTCATCATTG-TCAGTTTGTTTTCAACATGTCGGTTTATTCTTTCACGGATAAA-AAG-AAAGTGT-C--TT-CTT--TAAAGAAA-A-------T-CGCTGA--TATGGTGTTGAGTGTTTGTGTACATT-AT--TT----TA-T----TATTT--CCA-TT-CTGTTTCTAATGTAAACAAATCAAGGGAAGCAACTGCATAGCG--ACC-TATAT-TTGA-AACT--GAAAAGTAAA---TAAATATCTTAAAATTTGACGTTGATGTCATAATGGCGCAAT
gi|94298 : GTAAAATGTCATCATTG-TCCGTTTGTTTTCAACATGCCGGTATGTTCTTTCATGGATAAA-AAG-TAAGTGT-C--TT-CTT--TAAAGAAT-A-------T-CGCTGA--TATGGTATTGAGTGTTTGTGTACATT-AC--TT----TA-T----TATTT--CCA-CT-CTGTTTCTAATGTAAACAAATCAAGGGAAGCAACTGCATAGCG--ACA-TACA--TTGA-AACT--GAAAAGCAAA---TAAATATCTTAAAATACGACACCAACGTCATTATGGCGCAAT
gi|94299 : GTAAAACGTCATCAATG-TCATTTTGCTTTTAACATGTCGATATATTCTTTCACGTATAAA-AAA-TAAGTGT-C--TT-CTT--TAAAGAAA-A-------T-CGCTGA--TATGGCATTGAGTGTTTGTGTACATT-AT--TT----TA-T----TATTT--CCA-TT-CCG----------------ATCAACGGAAGCAACTGCACAGCG--ACC-TACAT-TTGA-AACT--GTTAAGCAAA---TAAATATCTTAAAATAC
gi|94300 : GTGAAAC--CATTCTTGGTCAGTTTGTTTTAAACATGTCGGTTCGTTCTTTTACG---AAA-AA---AAGTGT-TATTT-GTT--TAAA-AAG-G-------T-CGCTGA--TATTGTA---AGTGTTTGCGTACATT-TT--TTAGTATA-T----TATTT--CCC-TT-TTGTTTCTAATGTAAACAAATCGTGGGAAGCAACTGCATAGCG--ACC-TACATACTAA-AACT--GATAAGCAAA---TAAATATCTTAAAATACGAAGTCAACATCAGAATGGCACAAT
gi|94301 : GTAAAGCGTCATCATTG-TCAGTTCGTTTTCA---CGTCAGTTTATTCTTTCACGGATAAA-AAAATAAGTGTTC--TT-CTT--GAAAGAAA-A-------T-CGCTGA--TATGATATTTAGAGTTTGTATACAGT-AT--T-----------------T--CCA-TT-CTGTTATTAATGTAAACAAACCAAGGGAAGCAACTGTATAGCG--ACC-TATAT-TTGA-AACT--AAAAAGCATA---TAAATATATTA
gi|94302 : GTAAAACGTCATCATTG-TCAGTTTGTTTTCAGCATTTCGGAATGTTCTTTCACGGATAAA-AAG-TAAAT
gi|94303 : GTAAAACATCATTATTG-TCATTGCATTTTCAACATGTCGGTACAGTCT--------TAAA-AAA-AAATTGT-T--TT-TAT--TA
gi|94304 : TAAAACGTCATCATTG-TCAGGGCATTTTCAACATGTTGGTACATTCTTTCAAGGATAAA-ATA-TAAGTGTTC--TT-TGT--TAAAAAAA-AAATGTGTT-CA-TAA--TAAAAT-TTTAGTAAGTGTGTACATT-AT--TT----TAGTAAAATATTT--CCC-TT-CTGTTTCTAATGTAAACAAATCAAGGGAAGCAACTGCATAGCGTAATT-TTTAT-T--A-AACT--GAAAAGCAAA---TAAATATCTTAAAATACTACGTCAACATCAttt
gi|94305 : AAACGTCATCACTG-TCAGTTTGTTTTCAACATATCGGTATATTCTTTCACGGATAAA-AAG-TAAGTGT-T--TTTCTT--TAAAGTAA-C-------T-CGCATA--TACGGTATAAAGTGTTTGTGTATATT-AT--TT----TA-T----TATTT--CCA-TT-CTGTTTCTAATGTAAACAAAT-AAGGGAAGCAACTGCAT----------------TTGA-AACT--GAAAAGCTAA---TAAATATCTTAAAATACGACGTCAACGTCATAATGGCGCAAT
gi|94306 : AACGTCATCACTG-TTAGTGCATTTTGA-----TTGGTACATTTTTT---------G-AAG-T--GT-T-C--TT-CTT--TAAAATAA-T-------T-GGCTCA--TATGGTA---AGTATTTGCATACATT-AT--TT----TAGTTTAGTATTT--CCC-TT-CTGTTTCTAATGTAAAAAAATCAAGGGAAACAACTGTACAGCG--ACC-CACATATTAA-AACT--GAAAAGCAAA---TAAATATTTTAAAATACAACGTCAACGTCAGAATGGTACAA
gi|94307 : ATTCTTTTATAGATAAA-AAG-TGCGT-T-C--TT-CGT------GAAACA-------T--GTTGAAATATGAT---GAGTGTTTACAAACTTTCACG-TT----TA-T----AATTT--T---TTACT-TTTCCAATACAAAAAGATAAATGGAATCTACTACTCAGTT--ACT-CGCATGTTAA-AACTTAAAAAAATAAA---TAAATACCGTAAAATATCAAGTTAGCATCA
gi|94308 : ACGAATAAGGAAA-TAAGTGA-----T-CTTGGTAAAGAAA-A-------T--GCTGT--TATGGTA---AGTGTCTA--TACATT--T--TC----GA-T----TGTTTGTTCACTT-CCGTTTCCAA-GCAAACAAATCAAGG-AAGCAACTGCATTGC
gi|94309 : AAAAAA-A-------TACGCTGA--TATGGTA---AGTATTTGACTACATT-TTGGTT----TA-T----TATTT--CAT-TT-CCGCTTCCAATGTAAACAAATCTTGAGAAACAACTGCATAGC----CCATACAT-T--ATAACT---AAAGACAAATATTAAGTATCTTGAAATATAAAATTAACGTCAAAACGGCGCAA
gi|94310 : A--TATGGTATTGAGTGTTTGTGTTCATT-AT--TT----TA-T----TATTT--CCA-TT-CTGTTTCTAATGTAAACAAATCAAGAGAAGCAACTGCATAGCG--ACC-TACAT-TTGA-AACT--GAAAAGTAAA---TAAATAACTTAAAATACGACATTAATGTCATAATGGCGCAAT
gi|94311 : A-T----TATTT--CAC-TT-CCGTTTCCGATTTAAACAAATCAACACAAGCAACTGCAAAGCG--ACC-CAAATGTTAA-AACT--AAAAAGCAAA---ACAGTATCTTAAAATATCACGTTAACGTCA
gi|94312 : TGTTTCTAATATAAACAAATCAAAGGAAGCAAATGCATAGCG--ACC-TACAT-TTGA-AACT--GAAAAGCAAG---TAAATATCTTAAAATACGACGTCAACGTCATAATGGCGCAAT
gi|94313 : TACATAGCG--ACT-CAGATATTAA-AACT--GAAAAGCAAA---TAAATATCTTAAAAT
Alignments
lowQualScore : 1111 1111111 111 1111 1
lowQualScore : 3 0 1 0 3 3 0000 3 44 3 0000000 33 44 222 5 3 77 6666 5 2222 33 44 2 33 2 3 2 33 444
lowQualScore : . . . . . . .... . .. . ....... .. .. ... . . .. .... . .... .. .. . .. . . . .. ...
lowQualScore : 6 2 3 8 1 1 8888 3 66 3 8888888 88 22 999 6 1 33 5555 7 1111 99 33 9 77 7 3 7 77 777
consensus : GTAAAACGTCATCATTG-TCAGTTCGTTTTCAACATGTCGGTATATTCTTTCACGGATAAA-AAG-TAAGTGT-C--TT-CTT--TAAAGAAA-A-------T-CGCTGA--TATGGTATTGAGTGTTTGCGTACATT-AT--TT----TA-T----TATTT--CCA-TT-CTGTTTCTAATGTAAACAAATCAAGGGAAGCAACTGCATAGCG--ACC-TACAT-TTGA-AACT--GAAAAGCAAA---TAAATATCTTAAAATACGACGTCAACGTCATAATGGCGCAAT
Reference ( family-871 ) : GTAAAACGTCATCATTG-TCAGTTCGTTTTCAACATGTCGGTATATTCTTTCACGGATAAA-AAG-TAAGTGT-C--TT-CTT--TAAAGAAA-A-------T-CGCTGA--TATGGTATTGAGTGTTTGCGTACATT-AT--TT----TA-T----TATTT--CCA-TT-CTGTTTCTAATGTAAACAAATCAAGGGAAGCAACTGCATAGCG--ACC-TACAT-TTGA-AACT--GAAAAGCAAA---TAAATATCTTAAAATACGACGTCAACGTCATAATGGCGCAAT
gi|94296 : GTAAAGCGTCATCCTTT-TCAGTTTGTTTTCAACTTGTCGGTATATTCTTTCACGGATAAA-AAG-TAAGTGT-T--TT-CTT--TAAAGAAA-A-------T-CGCTGA--TATGGTATTGAGTGCTTGTGTATATT-AT--TT----AA-T----TATTT--CCA-TT-CTGTTTCTAATGTAAACAAATCAAGAGTAGCAACTGCATAGCG--ACC-TACAT-TTGA-AACT--GAAAAGTAAA---TAAATATCTTAAAATACGACGTCAACGTCATAATGACGCAAT
gi|94297 : GTAAAACGTCATCATTG-TCAGTTTGTTTTCAACATGTCGGTTTATTCTTTCACGGATAAA-AAG-AAAGTGT-C--TT-CTT--TAAAGAAA-A-------T-CGCTGA--TATGGTGTTGAGTGTTTGTGTACATT-AT--TT----TA-T----TATTT--CCA-TT-CTGTTTCTAATGTAAACAAATCAAGGGAAGCAACTGCATAGCG--ACC-TATAT-TTGA-AACT--GAAAAGTAAA---TAAATATCTTAAAATTTGACGTTGATGTCATAATGGCGCAAT
gi|94298 : GTAAAATGTCATCATTG-TCCGTTTGTTTTCAACATGCCGGTATGTTCTTTCATGGATAAA-AAG-TAAGTGT-C--TT-CTT--TAAAGAAT-A-------T-CGCTGA--TATGGTATTGAGTGTTTGTGTACATT-AC--TT----TA-T----TATTT--CCA-CT-CTGTTTCTAATGTAAACAAATCAAGGGAAGCAACTGCATAGCG--ACA-TACA--TTGA-AACT--GAAAAGCAAA---TAAATATCTTAAAATACGACACCAACGTCATTATGGCGCAAT
gi|94299 : GTAAAACGTCATCAATG-TCATTTTGCTTTTAACATGTCGATATATTCTTTCACGTATAAA-AAA-TAAGTGT-C--TT-CTT--TAAAGAAA-A-------T-CGCTGA--TATGGCATTGAGTGTTTGTGTACATT-AT--TT----TA-T----TATTT--CCA-TT-CCG----------------ATCAACGGAAGCAACTGCACAGCG--ACC-TACAT-TTGA-AACT--GTTAAGCAAA---TAAATATCTTAAAATAC
gi|94300 : GTGAAAC--CATTCTTGGTCAGTTTGTTTTAAACATGTCGGTTCGTTCTTTTACG---AAA-AA---AAGTGT-TATTT-GTT--TAAA-AAG-G-------T-CGCTGA--TATTGTA---AGTGTTTGCGTACATT-TT--TTAGTATA-T----TATTT--CCC-TT-TTGTTTCTAATGTAAACAAATCGTGGGAAGCAACTGCATAGCG--ACC-TACATACTAA-AACT--GATAAGCAAA---TAAATATCTTAAAATACGAAGTCAACATCAGAATGGCACAAT
gi|94301 : GTAAAGCGTCATCATTG-TCAGTTCGTTTTCA---CGTCAGTTTATTCTTTCACGGATAAA-AAAATAAGTGTTC--TT-CTT--GAAAGAAA-A-------T-CGCTGA--TATGATATTTAGAGTTTGTATACAGT-AT--T-----------------T--CCA-TT-CTGTTATTAATGTAAACAAACCAAGGGAAGCAACTGTATAGCG--ACC-TATAT-TTGA-AACT--AAAAAGCATA---TAAATATATTA
gi|94302 : GTAAAACGTCATCATTG-TCAGTTTGTTTTCAGCATTTCGGAATGTTCTTTCACGGATAAA-AAG-TAAAT
gi|94303 : GTAAAACATCATTATTG-TCATTGCATTTTCAACATGTCGGTACAGTCT--------TAAA-AAA-AAATTGT-T--TT-TAT--TA
gi|94304 : TAAAACGTCATCATTG-TCAGGGCATTTTCAACATGTTGGTACATTCTTTCAAGGATAAA-ATA-TAAGTGTTC--TT-TGT--TAAAAAAA-AAATGTGTT-CA-TAA--TAAAAT-TTTAGTAAGTGTGTACATT-AT--TT----TAGTAAAATATTT--CCC-TT-CTGTTTCTAATGTAAACAAATCAAGGGAAGCAACTGCATAGCGTAATT-TTTAT-T--A-AACT--GAAAAGCAAA---TAAATATCTTAAAATACTACGTCAACATCAttt
gi|94305 : AAACGTCATCACTG-TCAGTTTGTTTTCAACATATCGGTATATTCTTTCACGGATAAA-AAG-TAAGTGT-T--TTTCTT--TAAAGTAA-C-------T-CGCATA--TACGGTATAAAGTGTTTGTGTATATT-AT--TT----TA-T----TATTT--CCA-TT-CTGTTTCTAATGTAAACAAAT-AAGGGAAGCAACTGCAT----------------TTGA-AACT--GAAAAGCTAA---TAAATATCTTAAAATACGACGTCAACGTCATAATGGCGCAAT
gi|94306 : AACGTCATCACTG-TTAGTGCATTTTGA-----TTGGTACATTTTTT---------G-AAG-T--GT-T-C--TT-CTT--TAAAATAA-T-------T-GGCTCA--TATGGTA---AGTATTTGCATACATT-AT--TT----TAGTTTAGTATTT--CCC-TT-CTGTTTCTAATGTAAAAAAATCAAGGGAAACAACTGTACAGCG--ACC-CACATATTAA-AACT--GAAAAGCAAA---TAAATATTTTAAAATACAACGTCAACGTCAGAATGGTACAA
gi|94307 : ATTCTTTTATAGATAAA-AAG-TGCGT-T-C--TT-CGT------GAAACA-------T--GTTGAAATATGAT---GAGTGTTTACAAACTTTCACG-TT----TA-T----AATTT--T---TTACT-TTTCCAATACAAAAAGATAAATGGAATCTACTACTCAGTT--ACT-CGCATGTTAA-AACTTAAAAAAATAAA---TAAATACCGTAAAATATCAAGTTAGCATCA
gi|94308 : ACGAATAAGGAAA-TAAGTGA-----T-CTTGGTAAAGAAA-A-------T--GCTGT--TATGGTA---AGTGTCTA--TACATT--T--TC----GA-T----TGTTTGTTCACTT-CCGTTTCCAA-GCAAACAAATCAAGG-AAGCAACTGCATTGC
gi|94309 : AAAAAA-A-------TACGCTGA--TATGGTA---AGTATTTGACTACATT-TTGGTT----TA-T----TATTT--CAT-TT-CCGCTTCCAATGTAAACAAATCTTGAGAAACAACTGCATAGC----CCATACAT-T--ATAACT---AAAGACAAATATTAAGTATCTTGAAATATAAAATTAACGTCAAAACGGCGCAA
gi|94310 : A--TATGGTATTGAGTGTTTGTGTTCATT-AT--TT----TA-T----TATTT--CCA-TT-CTGTTTCTAATGTAAACAAATCAAGAGAAGCAACTGCATAGCG--ACC-TACAT-TTGA-AACT--GAAAAGTAAA---TAAATAACTTAAAATACGACATTAATGTCATAATGGCGCAAT
gi|94311 : A-T----TATTT--CAC-TT-CCGTTTCCGATTTAAACAAATCAACACAAGCAACTGCAAAGCG--ACC-CAAATGTTAA-AACT--AAAAAGCAAA---ACAGTATCTTAAAATATCACGTTAACGTCA
gi|94312 : TGTTTCTAATATAAACAAATCAAAGGAAGCAAATGCATAGCG--ACC-TACAT-TTGA-AACT--GAAAAGCAAG---TAAATATCTTAAAATACGACGTCAACGTCATAATGGCGCAAT
gi|94313 : TACATAGCG--ACT-CAGATATTAA-AACT--GAAAAGCAAA---TAAATATCTTAAAAT
blockSeqs : G A G A TAT T GG C AATGTGT AC AA TTG T C GG AGTA G AAAA GT AC A TA A A T TA TAT
blockSeqs : . A . . TC . . . . C . TTG T . G . G TTAG . A . . . A . . .
blockSeqs : . A . . TC . . . . C . TTG T . . . . . . A . . . G . . .
blockSeqs : . A . . C . . . . C . TTT C . . . . . . A . . . G . . .
blockSeqs : . G . . C . . . . C . TTT T . . . . . . C . . . A . . .
blockSeqs : . A . . C . . . . C . TAA T . . . . . . A . . . . . . .
blockSeqs : . A . . T . . . . C . TTG T . . . . . . C . . . . . . .
blockSeqs : . A . . T . . . . C . G C . . . . . . A . . . . . . .
blockSeqs : . . . . C . . . . G . . C . . . . . . C . . . . . . .
blockSeqs : . . . . C . . . . . . . A . . . . . . T . . . . . . .
blockSeqs : . . . . . . . . . . T . . . . . . A . . . . . . .
blockSeqs : . . . . . . . . . . . C . . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . . . . . .
blockSeqCons :
originalCons : GTAAAACGTCATCATTG-TCAGTTCGTTTTCAACATGTCGGTATATTCTTTCACGGATAAA-AAG-TAAGTGT-C--TT-CTT--TAAAGAAA-A-------T-CGCTGA--TATGGTATTGAGTGTTTGCGTACATT-AT--TT----TA-T----TATTT--CCA-TT-CTGTTTCTAATGTAAACAAATCAAGGGAAGCAACTGCATAGCG--ACC-TACAT-TTGA-AACT--GAAAAGCAAA---TAAATATCTTAAAATACGACGTCAACGTCATAATGGCGCAAT
finalCons : GTAAAACGTCATCATTG-TCAGTTCGTTTTCAACATGTCGGTATATTCTTTCACGGATAAA-AAG-TAAGTGT-C--TT-CTT--TAAAGAAA-A-------T-CGCTGA--TATGGTATTGAGTGTTTGCGTACATT-AT--TT----TA-T----TATTT--CCA-TT-CTGTTTCTAATGTAAACAAATCAAGGGAAGCAACTGCATAGCG--ACC-TACAT-TTGA-AACT--GAAAAGCAAA---TAAATATCTTAAAATACGACGTCAACGTCATAATGGCGCAAT
Alignments
lowQualScore : 1111 1111111 111 1111 1
lowQualScore : 3 0 1 0 3 3 0000 3 44 3 0000000 33 44 222 5 3 77 6666 5 2222 33 44 2 33 2 3 2 33 444
lowQualScore : . . . . . . .... . .. . ....... .. .. ... . . .. .... . .... .. .. . .. . . . .. ...
lowQualScore : 6 2 3 8 1 1 8888 3 66 3 8888888 88 22 999 6 1 33 5555 7 1111 99 33 9 77 7 3 7 77 777
consensus : GTAAAACGTCATCATTG-TCAGTTCGTTTTCAACATGTCGGTATATTCTTTCACGGATAAA-AAG-TAAGTGT-C--TT-CTT--TAAAGAAA-A-------T-CGCTGA--TATGGTATTGAGTGTTTGCGTACATT-AT--TT----TA-T----TATTT--CCA-TT-CTGTTTCTAATGTAAACAAATCAAGGGAAGCAACTGCATAGCG--ACC-TACAT-TTGA-AACT--GAAAAGCAAA---TAAATATCTTAAAATACGACGTCAACGTCATAATGGCGCAAT
Reference ( family-871 ) : GTAAAACGTCATCATTG-TCAGTTCGTTTTCAACATGTCGGTATATTCTTTCACGGATAAA-AAG-TAAGTGT-C--TT-CTT--TAAAGAAA-A-------T-CGCTGA--TATGGTATTGAGTGTTTGCGTACATT-AT--TT----TA-T----TATTT--CCA-TT-CTGTTTCTAATGTAAACAAATCAAGGGAAGCAACTGCATAGCG--ACC-TACAT-TTGA-AACT--GAAAAGCAAA---TAAATATCTTAAAATACGACGTCAACGTCATAATGGCGCAAT
gi|94296 : GTAAAGCGTCATCCTTT-TCAGTTTGTTTTCAACTTGTCGGTATATTCTTTCACGGATAAA-AAG-TAAGTGT-T--TT-CTT--TAAAGAAA-A-------T-CGCTGA--TATGGTATTGAGTGCTTGTGTATATT-AT--TT----AA-T----TATTT--CCA-TT-CTGTTTCTAATGTAAACAAATCAAGAGTAGCAACTGCATAGCG--ACC-TACAT-TTGA-AACT--GAAAAGTAAA---TAAATATCTTAAAATACGACGTCAACGTCATAATGACGCAAT
gi|94297 : GTAAAACGTCATCATTG-TCAGTTTGTTTTCAACATGTCGGTTTATTCTTTCACGGATAAA-AAG-AAAGTGT-C--TT-CTT--TAAAGAAA-A-------T-CGCTGA--TATGGTGTTGAGTGTTTGTGTACATT-AT--TT----TA-T----TATTT--CCA-TT-CTGTTTCTAATGTAAACAAATCAAGGGAAGCAACTGCATAGCG--ACC-TATAT-TTGA-AACT--GAAAAGTAAA---TAAATATCTTAAAATTTGACGTTGATGTCATAATGGCGCAAT
gi|94298 : GTAAAATGTCATCATTG-TCCGTTTGTTTTCAACATGCCGGTATGTTCTTTCATGGATAAA-AAG-TAAGTGT-C--TT-CTT--TAAAGAAT-A-------T-CGCTGA--TATGGTATTGAGTGTTTGTGTACATT-AC--TT----TA-T----TATTT--CCA-CT-CTGTTTCTAATGTAAACAAATCAAGGGAAGCAACTGCATAGCG--ACA-TACA--TTGA-AACT--GAAAAGCAAA---TAAATATCTTAAAATACGACACCAACGTCATTATGGCGCAAT
gi|94299 : GTAAAACGTCATCAATG-TCATTTTGCTTTTAACATGTCGATATATTCTTTCACGTATAAA-AAA-TAAGTGT-C--TT-CTT--TAAAGAAA-A-------T-CGCTGA--TATGGCATTGAGTGTTTGTGTACATT-AT--TT----TA-T----TATTT--CCA-TT-CCG----------------ATCAACGGAAGCAACTGCACAGCG--ACC-TACAT-TTGA-AACT--GTTAAGCAAA---TAAATATCTTAAAATAC
gi|94300 : GTGAAAC--CATTCTTGGTCAGTTTGTTTTAAACATGTCGGTTCGTTCTTTTACG---AAA-AA---AAGTGT-TATTT-GTT--TAAA-AAG-G-------T-CGCTGA--TATTGTA---AGTGTTTGCGTACATT-TT--TTAGTATA-T----TATTT--CCC-TT-TTGTTTCTAATGTAAACAAATCGTGGGAAGCAACTGCATAGCG--ACC-TACATACTAA-AACT--GATAAGCAAA---TAAATATCTTAAAATACGAAGTCAACATCAGAATGGCACAAT
gi|94301 : GTAAAGCGTCATCATTG-TCAGTTCGTTTTCA---CGTCAGTTTATTCTTTCACGGATAAA-AAAATAAGTGTTC--TT-CTT--GAAAGAAA-A-------T-CGCTGA--TATGATATTTAGAGTTTGTATACAGT-AT--T-----------------T--CCA-TT-CTGTTATTAATGTAAACAAACCAAGGGAAGCAACTGTATAGCG--ACC-TATAT-TTGA-AACT--AAAAAGCATA---TAAATATATTA
gi|94302 : GTAAAACGTCATCATTG-TCAGTTTGTTTTCAGCATTTCGGAATGTTCTTTCACGGATAAA-AAG-TAAAT
gi|94303 : GTAAAACATCATTATTG-TCATTGCATTTTCAACATGTCGGTACAGTCT--------TAAA-AAA-AAATTGT-T--TT-TAT--TA
gi|94304 : TAAAACGTCATCATTG-TCAGGGCATTTTCAACATGTTGGTACATTCTTTCAAGGATAAA-ATA-TAAGTGTTC--TT-TGT--TAAAAAAA-AAATGTGTT-CA-TAA--TAAAAT-TTTAGTAAGTGTGTACATT-AT--TT----TAGTAAAATATTT--CCC-TT-CTGTTTCTAATGTAAACAAATCAAGGGAAGCAACTGCATAGCGTAATT-TTTAT-T--A-AACT--GAAAAGCAAA---TAAATATCTTAAAATACTACGTCAACATCAttt
gi|94305 : AAACGTCATCACTG-TCAGTTTGTTTTCAACATATCGGTATATTCTTTCACGGATAAA-AAG-TAAGTGT-T--TTTCTT--TAAAGTAA-C-------T-CGCATA--TACGGTATAAAGTGTTTGTGTATATT-AT--TT----TA-T----TATTT--CCA-TT-CTGTTTCTAATGTAAACAAAT-AAGGGAAGCAACTGCAT----------------TTGA-AACT--GAAAAGCTAA---TAAATATCTTAAAATACGACGTCAACGTCATAATGGCGCAAT
gi|94306 : AACGTCATCACTG-TTAGTGCATTTTGA-----TTGGTACATTTTTT---------G-AAG-T--GT-T-C--TT-CTT--TAAAATAA-T-------T-GGCTCA--TATGGTA---AGTATTTGCATACATT-AT--TT----TAGTTTAGTATTT--CCC-TT-CTGTTTCTAATGTAAAAAAATCAAGGGAAACAACTGTACAGCG--ACC-CACATATTAA-AACT--GAAAAGCAAA---TAAATATTTTAAAATACAACGTCAACGTCAGAATGGTACAA
gi|94307 : ATTCTTTTATAGATAAA-AAG-TGCGT-T-C--TT-CGT------GAAACA-------T--GTTGAAATATGAT---GAGTGTTTACAAACTTTCACG-TT----TA-T----AATTT--T---TTACT-TTTCCAATACAAAAAGATAAATGGAATCTACTACTCAGTT--ACT-CGCATGTTAA-AACTTAAAAAAATAAA---TAAATACCGTAAAATATCAAGTTAGCATCA
gi|94308 : ACGAATAAGGAAA-TAAGTGA-----T-CTTGGTAAAGAAA-A-------T--GCTGT--TATGGTA---AGTGTCTA--TACATT--T--TC----GA-T----TGTTTGTTCACTT-CCGTTTCCAA-GCAAACAAATCAAGG-AAGCAACTGCATTGC
gi|94309 : AAAAAA-A-------TACGCTGA--TATGGTA---AGTATTTGACTACATT-TTGGTT----TA-T----TATTT--CAT-TT-CCGCTTCCAATGTAAACAAATCTTGAGAAACAACTGCATAGC----CCATACAT-T--ATAACT---AAAGACAAATATTAAGTATCTTGAAATATAAAATTAACGTCAAAACGGCGCAA
gi|94310 : A--TATGGTATTGAGTGTTTGTGTTCATT-AT--TT----TA-T----TATTT--CCA-TT-CTGTTTCTAATGTAAACAAATCAAGAGAAGCAACTGCATAGCG--ACC-TACAT-TTGA-AACT--GAAAAGTAAA---TAAATAACTTAAAATACGACATTAATGTCATAATGGCGCAAT
gi|94311 : A-T----TATTT--CAC-TT-CCGTTTCCGATTTAAACAAATCAACACAAGCAACTGCAAAGCG--ACC-CAAATGTTAA-AACT--AAAAAGCAAA---ACAGTATCTTAAAATATCACGTTAACGTCA
gi|94312 : TGTTTCTAATATAAACAAATCAAAGGAAGCAAATGCATAGCG--ACC-TACAT-TTGA-AACT--GAAAAGCAAG---TAAATATCTTAAAATACGACGTCAACGTCATAATGGCGCAAT
gi|94313 : TACATAGCG--ACT-CAGATATTAA-AACT--GAAAAGCAAA---TAAATATCTTAAAAT