lowQualScore                  :                                 2222222                                                11                                                          1111111111                    111            11111          
lowQualScore                  :     66            4 777777      1111111     4 33                         2   55  2     55      33      4              9   3    444 777777          1111111111   7  3       44    222   4        88888          
lowQualScore                  :     ..            . ......      .......     . ..                         .   ..  .     ..      ..      .              .   .    ... ......          ..........   .  .       ..    ...   .        .....          
lowQualScore                  :     33            0 777777      9999999     1 22                         4   66  5     66      44      8              8   4    777 777777          7777777777   4  1       66    555   8        99999          
consensus                     : TTAC--CACTACAAGGCAAT------GCTCAT-GATG-TCCATTNA--TCAACCTCTTTATTACACGTGCTTC-TAA--AT-TATGT-GTACACA--TACTTTNTTTATATTTTAACCGAGTNTAAA---A------TGAAAGAAAA----------ATAATA-ATAAAAA--CAAT---TTTAATTTAAAA-----CAAAAAGAAA
Reference ( gi|143073 )       : TTAC--CACTACAAGGCAAT------GCTCAT-GATG-TCCATTTA--TCAACCTCTTTATTACACGTGCTTC-TAA--AT-TATGT-TTACACA--TACTTTATTTATATTTTAACCGAGTATAAA---A------TGAAAGAAAA----------ATAGTA-ATAAAAA--CAAT---TTTAATTTAAAA-----CAAAAAGAAA
gi|143074                     : TCAC--CACTACAAGGCAAT------GCTCAT-GATG-TCCTTTAA--TCAACCTTTTTATTACACGTGCTTC-TAA--AT-TATGT-GTACACA--TACTTTATTTATATTTTAACCGCGTGTAAA---A------TGAAAGAAAA----------ATAATA-ATAAAAA--CAAT---TTTAATTTAAAA-----CTAAAAGAAA
gi|143075                     : TTAC--CACTACAAGGTAAT------GCTCAT-GATT-TCCATTAA--TCAACCTCTTTATTACACGTGCTTC-TAA--AT-TATGT-TTACAGA--TACTTTATTTATATTTTAACCGAGTATAAG---A------TGAAAG-AAA----------ATAATA-ATAAAAA--CATT---TTTAATTAAAAA-----CAAAAAGAAA
gi|143076                     : TTAT--CACTACAAGGCAATTTTAATGCTCAT-GATG-TCCATTTA--TCAACCTCTTTATTACACGTGCTTC-TAA--AT-TATAT-GTACACA--TACTTTCTTTATATTTTATCCGAGTATAAA---A------T-AAAGAAAA----------ATAATA-ATAAAAA--CAAT---TTTAATTTGAAAAAT--TAAAAAAAAA
gi|143077                     : TCAC--CACTACAAGGCAAT------GCTCAT-GAAG-TCCATTAA--TCAACCTCTTTATTACACTAGCTTC-TAT--AT-TA-GT-GTACACC--TACTTTATTTATATTTCAACCGAGTATAAA---A------TAAAAGAAAA----------ATAATA-ATAAAAT--TTTT---TTTAATTTAAAA-----CAAAAAGAAA
gi|143078                     : TTAC--CACTACAAGGCAAT------GTTCAT-GATA-TCAATTAA--TCAACCTCTTTATTACGCGTGCTTC-TAA--ATCTATGT-GTACACA--TACTTTATCTATATTTTAACCGAGTATAAA---A------TGAAAGAAAA----------ATAATA-
gi|143079                     : TTAC--CACTACAAGGCAAT------GCTCAT-GATG-TCCATGAA--TCAACCTCTTTATTACACGTGCTTC-TAA--AT-TATGA-GTACACA--TACTTTATTTTTATTTAAACCGAGTATAAA---A------TGAAAGAAAA----------
gi|143080                     : TTAT--CACTACAATGCAAT------GTTCATTGATG-TCCATAAA--TCAACCTCTTTATTACACGTGCTTC-T--------------TACATAAGTACTTTATTTATATTTTAACCGAGTCTAAA---A------TGAAAGAAAA----------TTAATA-ATAATAA--CAAT---TTTAATTTAAAA-----CAAAAATAAA
gi|143082                     : TTAT--CACTACAAGGCACT------GCTCAT-------CCATTCA--TCAACCTCTTTATTACAGGCAATTT-TAA--AT-TATGT-CTACACA--TACTTT-TTTATATTTGAACCTTGTCTAAA---A------TGAATGAAAA----------ATAATA-ATAAAAA--CAAA---TTTATTTTAAAAACCCCCAAAAA
gi|143081                     : TTACATCACTGCAAGGCACT------GCTCAT-------CCATTAA--TCAACCTCTTTATTA-----G-TTC-TGA--AT-TATGT-GTACACA--TACTTTCTTTATATTTTAACCTATTCTAAA---A------TGAAAGAAAA----------ATAATA-ATAAAAA--CAA
gi|143083                     : TTAT--CACAACAAGGCATT------GCTCAT-------CCATTT---TCAACCTCTTTATTGCATGCGCTTC-TAA--AT-TATAT-------G--TACTTTCTTTATATTTTTACCTATTGTAAG---A------TGAAAGAAAA----------A---TA-ATAAAAA--CAAT---TTT
gi|143084                     : TTAT--CACTGTAAGGCACT------GCTCAC-------TCATTTA--TCAACCTTTTTATTATACGTGTTTCGCAAT-AT-TATAA-ATACACA--TACATTTTTTATATCTTAATC-AGTCTAAATTTACAAATTTAAAAGAAAA----------ATA
gi|143085                     : TTAT--CTCTACAAGGCACT------CCGCAT-------CCATTTA--TTAACCTCTTTATTACACGTTCTT------------TG-------CA--TACTTTTGTCATATTTCAAACCAGTCTAAA---A------TGAAAGAAAACTACATAAATGTAATA-ATAAAAA--TAATTA-TTTTTTTTAAAA-----
gi|143086                     : TTACT-CGCCACCAGGCA---------CTCGT-CAT---CCTTTTA--ACAACCTAT--ATTGCACGCGCTTC-TAA--AT-TATGT-GTACACA--TACTAAATCTA------AATC-----TAAA---A------TGAGAGAAAC----------AT--TATATAAAAAAGAAATTCATTT--TTTAGAA-----GAAAAAAAAa
gi|143087                     : TTAT--CATTACAAGGCACT------G---AT---TA-CCTATTTAATTCAACCTCTTTATTACACATGTTAC-TAA--A
gi|143088                     :   AC--CACTACAATGTAAT------GCTCAT-GATG-TCAATTAA--TCAACCTCTTTATTACACGTGCTTC-TAA--AT-TATGT-GTACACA--TATTTTATTTATATTTTAACCAAGTATAAA---A------TGAAAGAAAA----------ATAATA-ATTAAAA--CAAT---TTT-ATTTAACA-----CAAAAAGAAA
gi|143089                     :                               AT-AATGATCCATTTA--TTAGCCTCTGTATTGCACGTTTTAC-TAAATAT-TATGT-GTAAACA--TATTTTCTTTATATTTCCATC-AGTAT
gi|143090                     :                                        CCATTTA--TCAACCTCTTTATTACACGTCCTTC-TAA--AT-TATGTGTTA-ACA--TACTTTCTTTTTATTTTATCC-AGTCTAAA---A------TGAAAGAAAA----------ATAATA-ATAAAAA--CA





Alignments
lowQualScore                  :                                 1111111                                                                                                           1111111111                   111            11111          
lowQualScore                  :     55            3 777777      7777777     1 33                         2   2  55            33      4              7   1    444 777777          0000000000             44    111   3        77777          
lowQualScore                  :     ..            . ......      .......     . ..                         .   .  ..            ..      .              .   .    ... ......          ..........             ..    ...   .        .....          
lowQualScore                  :     99            2 222222      8888888     0 11                         2   2  66            22      1              1   0    444 222222          9999999999             22    444   4        00000          
consensus                     : TTAC--CACTACAAGGCAAT------GCTCAT-GATG-TCCATTNA--TCAACCTCTTTATTACACGTGCTTC-TAA-AT--TATGTGTACACA--TACTTTNTTTATATTTTAACCGAGTNTAAA---A------TGAAAGAAAA----------ATAATAATAAAAA--CAAT---TTTAATTTAAAA-----CAAAAAGAAA
Reference ( family-870 )      : TTAC--CACTACAAGGCAAT------GCTCAT-GATG-TCCATTNA--TCAACCTCTTTATTACACGTGCTTC-TAA-AT--TATGTGTACACA--TACTTTNTTTATATTTTAACCGAGTNTAAA---A------TGAAAGAAAA----------ATAATAATAAAAA--CAAT---TTTAATTTAAAA-----CAAAAAGAAA
gi|143073                     : TTAC--CACTACAAGGCAAT------GCTCAT-GATG-TCCATTTA--TCAACCTCTTTATTACACGTGCTTC-TAA-AT--TATGTTTACACA--TACTTTATTTATATTTTAACCGAGTATAAA---A------TGAAAGAAAA----------ATAGTAATAAAAA--CAAT---TTTAATTTAAAA-----CAAAAAGAAA
gi|143074                     : TCAC--CACTACAAGGCAAT------GCTCAT-GATG-TCCTTTAA--TCAACCTTTTTATTACACGTGCTTC-TAA-AT--TATGTGTACACA--TACTTTATTTATATTTTAACCGCGTGTAAA---A------TGAAAGAAAA----------ATAATAATAAAAA--CAAT---TTTAATTTAAAA-----CTAAAAGAAA
gi|143075                     : TTAC--CACTACAAGGTAAT------GCTCAT-GATT-TCCATTAA--TCAACCTCTTTATTACACGTGCTTC-TAA-AT--TATGTTTACAGA--TACTTTATTTATATTTTAACCGAGTATAAG---A------TGAAAG-AAA----------ATAATAATAAAAA--CATT---TTTAATTAAAAA-----CAAAAAGAAA
gi|143076                     : TTAT--CACTACAAGGCAATTTTAATGCTCAT-GATG-TCCATTTA--TCAACCTCTTTATTACACGTGCTTC-TAA-AT--TATATGTACACA--TACTTTCTTTATATTTTATCCGAGTATAAA---A------T-AAAGAAAA----------ATAATAATAAAAA--CAAT---TTTAATTTGAAAAAT--TAAAAAAAAA
gi|143077                     : TCAC--CACTACAAGGCAAT------GCTCAT-GAAG-TCCATTAA--TCAACCTCTTTATTACACTAGCTTC-TAT-AT--TA-GTGTACACC--TACTTTATTTATATTTCAACCGAGTATAAA---A------TAAAAGAAAA----------ATAATAATAAAAT--TTTT---TTTAATTTAAAA-----CAAAAAGAAA
gi|143078                     : TTAC--CACTACAAGGCAAT------GTTCAT-GATA-TCAATTAA--TCAACCTCTTTATTACGCGTGCTTC-TAA-ATC-TATGTGTACACA--TACTTTATCTATATTTTAACCGAGTATAAA---A------TGAAAGAAAA----------ATAATA
gi|143079                     : TTAC--CACTACAAGGCAAT------GCTCAT-GATG-TCCATGAA--TCAACCTCTTTATTACACGTGCTTC-TAA-AT--TATGAGTACACA--TACTTTATTTTTATTTAAACCGAGTATAAA---A------TGAAAGAAAA----------
gi|143080                     : TTAT--CACTACAATGCAAT------GTTCATTGATG-TCCATAAA--TCAACCTCTTTATTACACGTGCTTC-T-------------TACATAAGTACTTTATTTATATTTTAACCGAGTCTAAA---A------TGAAAGAAAA----------TTAATAATAATAA--CAAT---TTTAATTTAAAA-----CAAAAATAAA
gi|143081                     : TTACATCACTGCAAGGCACT------GCTCAT-------CCATTAA--TCAACCTCTTTATTA-----G-TTC-TGA-AT--TATGTGTACACA--TACTTTCTTTATATTTTAACCTATTCTAAA---A------TGAAAGAAAA----------ATAATAATAAAAA--CAA
gi|143082                     : TTAT--CACTACAAGGCACT------GCTCAT-------CCATTCA--TCAACCTCTTTATTACAGGCAATTT-TAA-AT--TATGTCTACACA--TACTTT-TTTATATTTGAACCTTGTCTAAA---A------TGAATGAAAA----------ATAATAATAAAAA--CAAA---TTTATTTTAAAAACCCCCAAAAA
gi|143083                     : TTAT--CACAACAAGGCATT------GCTCAT-------CCATTT---TCAACCTCTTTATTGCATGCGCTTC-TAA-AT--TATATGTAC--------TTTCTTTATATTTTTACCTATTGTAAG---A------TGAAAGAAA-------------AATAATAAAAA--CAAT---TTT
gi|143084                     : TTAT--CACTGTAAGGCACT------GCTCAC-------TCATTTA--TCAACCTTTTTATTATACGTGTTTCGCAATAT--TATAAATACACA--TACATTTTTTATATCTTAATC-AGTCTAAATTTACAAATTTAAAAGAAAA----------ATA
gi|143085                     : TTAT--CTCTACAAGGCACT------CCGCAT-------CCATTTA--TTAACCTCTTTATTACACGTTCTT--------------TG----CA--TACTTTTGTCATATTTCAAACCAGTCTAAA---A------TGAAAGAAAACTACATAAATGTAATAATAAAAA--TAATTA-TTTTTTTTAAAA-----
gi|143086                     : TTACT-CGCCACCAGGCA---------CTCGT-CAT---CCTTTTA--ACAACCTAT--ATTGCACGCGCTTC-TAA-AT--TATGTGTACACA--TACT------AAATCTAAA-----TCTAAA---A------TGAGAGAAAC----------ATTAT-ATAAAAAAGAAATTCATTT--TTTAGAA-----GAAAAAAAAa
gi|143087                     : TTAT--CATTACAAGGCACT------G---AT---TA-CCTATTTAATTCAACCTCTTTATTACACATGTTAC-TAA-A
gi|143088                     :   AC--CACTACAATGTAAT------GCTCAT-GATG-TCAATTAA--TCAACCTCTTTATTACACGTGCTTC-TAA-AT--TATGTGTACACA--TATTTTATTTATATTTTAACCAAGTATAAA---A------TGAAAGAAAA----------ATAATAATTAAAA--CAAT---TTT-ATTTAACA-----CAAAAAGAAA
gi|143089                     :                               AT-AATGATCCATTTA--TTAGCCTCTGTATTGCACGTTTTAC-TAA-ATATTATGTGTAAACA--TATTTTCTTTATATTTCCATC-AGTAT
gi|143090                     :                                        CCATTTA--TCAACCTCTTTATTACACGTCCTTC-TAA-AT--TATGTGTTAACA--TACTTTCTTTTTATTTTATCC-AGTCTAAA---A------TGAAAGAAAA----------ATAATAATAAAAA--CA





Alignments
lowQualScore                  :                                 1111111                                                                                                           1111111111                   111            11111          
lowQualScore                  :     55            3 777777      7777777     1 33                         2   2  55            33      4              7   1    444 777777          0000000000             44    111   3        77777          
lowQualScore                  :     ..            . ......      .......     . ..                         .   .  ..            ..      .              .   .    ... ......          ..........             ..    ...   .        .....          
lowQualScore                  :     99            2 222222      8888888     0 11                         2   2  66            22      1              1   0    444 222222          9999999999             22    444   4        00000          
consensus                     : TTAC--CACTACAAGGCAAT------GCTCAT-GATG-TCCATTNA--TCAACCTCTTTATTACACGTGCTTC-TAA-AT--TATGTGTACACA--TACTTTNTTTATATTTTAACCGAGTNTAAA---A------TGAAAGAAAA----------ATAATAATAAAAA--CAAT---TTTAATTTAAAA-----CAAAAAGAAA
Reference ( family-870 )      : TTAC--CACTACAAGGCAAT------GCTCAT-GATG-TCCATTNA--TCAACCTCTTTATTACACGTGCTTC-TAA-AT--TATGTGTACACA--TACTTTNTTTATATTTTAACCGAGTNTAAA---A------TGAAAGAAAA----------ATAATAATAAAAA--CAAT---TTTAATTTAAAA-----CAAAAAGAAA
gi|143073                     : TTAC--CACTACAAGGCAAT------GCTCAT-GATG-TCCATTTA--TCAACCTCTTTATTACACGTGCTTC-TAA-AT--TATGTTTACACA--TACTTTATTTATATTTTAACCGAGTATAAA---A------TGAAAGAAAA----------ATAGTAATAAAAA--CAAT---TTTAATTTAAAA-----CAAAAAGAAA
gi|143074                     : TCAC--CACTACAAGGCAAT------GCTCAT-GATG-TCCTTTAA--TCAACCTTTTTATTACACGTGCTTC-TAA-AT--TATGTGTACACA--TACTTTATTTATATTTTAACCGCGTGTAAA---A------TGAAAGAAAA----------ATAATAATAAAAA--CAAT---TTTAATTTAAAA-----CTAAAAGAAA
gi|143075                     : TTAC--CACTACAAGGTAAT------GCTCAT-GATT-TCCATTAA--TCAACCTCTTTATTACACGTGCTTC-TAA-AT--TATGTTTACAGA--TACTTTATTTATATTTTAACCGAGTATAAG---A------TGAAAG-AAA----------ATAATAATAAAAA--CATT---TTTAATTAAAAA-----CAAAAAGAAA
gi|143076                     : TTAT--CACTACAAGGCAATTTTAATGCTCAT-GATG-TCCATTTA--TCAACCTCTTTATTACACGTGCTTC-TAA-AT--TATATGTACACA--TACTTTCTTTATATTTTATCCGAGTATAAA---A------T-AAAGAAAA----------ATAATAATAAAAA--CAAT---TTTAATTTGAAAAAT--TAAAAAAAAA
gi|143077                     : TCAC--CACTACAAGGCAAT------GCTCAT-GAAG-TCCATTAA--TCAACCTCTTTATTACACTAGCTTC-TAT-AT--TA-GTGTACACC--TACTTTATTTATATTTCAACCGAGTATAAA---A------TAAAAGAAAA----------ATAATAATAAAAT--TTTT---TTTAATTTAAAA-----CAAAAAGAAA
gi|143078                     : TTAC--CACTACAAGGCAAT------GTTCAT-GATA-TCAATTAA--TCAACCTCTTTATTACGCGTGCTTC-TAA-ATC-TATGTGTACACA--TACTTTATCTATATTTTAACCGAGTATAAA---A------TGAAAGAAAA----------ATAATA
gi|143079                     : TTAC--CACTACAAGGCAAT------GCTCAT-GATG-TCCATGAA--TCAACCTCTTTATTACACGTGCTTC-TAA-AT--TATGAGTACACA--TACTTTATTTTTATTTAAACCGAGTATAAA---A------TGAAAGAAAA----------
gi|143080                     : TTAT--CACTACAATGCAAT------GTTCATTGATG-TCCATAAA--TCAACCTCTTTATTACACGTGCTTC-T-------------TACATAAGTACTTTATTTATATTTTAACCGAGTCTAAA---A------TGAAAGAAAA----------TTAATAATAATAA--CAAT---TTTAATTTAAAA-----CAAAAATAAA
gi|143081                     : TTACATCACTGCAAGGCACT------GCTCAT-------CCATTAA--TCAACCTCTTTATTA-----G-TTC-TGA-AT--TATGTGTACACA--TACTTTCTTTATATTTTAACCTATTCTAAA---A------TGAAAGAAAA----------ATAATAATAAAAA--CAA
gi|143082                     : TTAT--CACTACAAGGCACT------GCTCAT-------CCATTCA--TCAACCTCTTTATTACAGGCAATTT-TAA-AT--TATGTCTACACA--TACTTT-TTTATATTTGAACCTTGTCTAAA---A------TGAATGAAAA----------ATAATAATAAAAA--CAAA---TTTATTTTAAAAACCCCCAAAAA
gi|143083                     : TTAT--CACAACAAGGCATT------GCTCAT-------CCATTT---TCAACCTCTTTATTGCATGCGCTTC-TAA-AT--TATATGTAC--------TTTCTTTATATTTTTACCTATTGTAAG---A------TGAAAGAAA-------------AATAATAAAAA--CAAT---TTT
gi|143084                     : TTAT--CACTGTAAGGCACT------GCTCAC-------TCATTTA--TCAACCTTTTTATTATACGTGTTTCGCAATAT--TATAAATACACA--TACATTTTTTATATCTTAATC-AGTCTAAATTTACAAATTTAAAAGAAAA----------ATA
gi|143085                     : TTAT--CTCTACAAGGCACT------CCGCAT-------CCATTTA--TTAACCTCTTTATTACACGTTCTT--------------TG----CA--TACTTTTGTCATATTTCAAACCAGTCTAAA---A------TGAAAGAAAACTACATAAATGTAATAATAAAAA--TAATTA-TTTTTTTTAAAA-----
gi|143086                     : TTACT-CGCCACCAGGCA---------CTCGT-CAT---CCTTTTA--ACAACCTAT--ATTGCACGCGCTTC-TAA-AT--TATGTGTACACA--TACT------AAATCTAAA-----TCTAAA---A------TGAGAGAAAC----------ATTAT-ATAAAAAAGAAATTCATTT--TTTAGAA-----GAAAAAAAAa
gi|143087                     : TTAT--CATTACAAGGCACT------G---AT---TA-CCTATTTAATTCAACCTCTTTATTACACATGTTAC-TAA-A
gi|143088                     :   AC--CACTACAATGTAAT------GCTCAT-GATG-TCAATTAA--TCAACCTCTTTATTACACGTGCTTC-TAA-AT--TATGTGTACACA--TATTTTATTTATATTTTAACCAAGTATAAA---A------TGAAAGAAAA----------ATAATAATTAAAA--CAAT---TTT-ATTTAACA-----CAAAAAGAAA
gi|143089                     :                               AT-AATGATCCATTTA--TTAGCCTCTGTATTGCACGTTTTAC-TAA-ATATTATGTGTAAACA--TATTTTCTTTATATTTCCATC-AGTAT
gi|143090                     :                                        CCATTTA--TCAACCTCTTTATTACACGTCCTTC-TAA-AT--TATGTGTTAACA--TACTTTCTTTTTATTTTATCC-AGTCTAAA---A------TGAAAGAAAA----------ATAATAATAAAAA--CA


blockSeqs                     :     AT            A TTTAAT      TGATGT      A AT                         G   T  AT            AG      A              G   G    TTT CAAATT          CTACATAAAT             AG    TCA   A        ACCCC
blockSeqs                     :     T             A .           AATGAT      A .                          .   .  C             .       A              G   A    .   .               .                      .     TA    A        AAT  
blockSeqs                     :     .             A .           GATGT       T .                          .   .  .             .       C              G   A    .   .               .                      .     .     A        .    
blockSeqs                     :     .             A .           GATTT       A .                          .   .  .             .       A              G   A    .   .               .                      .     .     A        .    
blockSeqs                     :     .             A .           GATGT       A .                          .   .  .             .       A              G   A    .   .               .                      .     .     A        .    
blockSeqs                     :     .             A .           GAAGT       A .                          .   .  .             .       A              G   A    .   .               .                      .     .     A        .    
blockSeqs                     :     .             A .           GATAT       A .                          .   .  .             .       A              G   C    .   .               .                      .     .     T        .    
blockSeqs                     :     .             C .           GATGT       A .                          .   .  .             .       C              T   C    .   .               .                      .     .     .        .    
blockSeqs                     :     .             C .           GATGT       C .                          .   .  .             .       C              T   C    .   .               .                      .     .     .        .    
blockSeqs                     :     .             T .           CAT         T .                          .   .  .             .       T              T   G    .   .               .                      .     .                   
blockSeqs                     :     .             C .           TAC         T .                          .   .  .             .       T              C   C    .   .               .                      .                         
blockSeqs                     :     .             C .           .           T .                          .   .  .             .       A              A   C    .   .               .                      .                         
blockSeqs                     :     .             C .           .           T .                          .   .  .             .       C              .   C    .   .               .                                                
blockSeqs                     :     .             A .           .           T .                          .   .  .             .       C              .   A    .   .               .                                                
blockSeqs                     :     .             . .           .           A .                          .   .  .             .       .              .   A    .   .               .                                                
blockSeqs                     :                                 .           T .                          .   .  .             .       .              .   C                                                                         
blockSeqs                     :                                             T .                          .   .                                                                                                                     


blockSeqCons                  : 
originalCons                  : TTAC--CACTACAAGGCAAT------GCTCAT-GATG-TCCATTNA--TCAACCTCTTTATTACACGTGCTTC-TAA-AT--TATGTGTACACA--TACTTTNTTTATATTTTAACCGAGTNTAAA---A------TGAAAGAAAA----------ATAATAATAAAAA--CAAT---TTTAATTTAAAA-----CAAAAAGAAA
finalCons                     : TTAC--CACTACAAGGCAAT------GCTCAT-GATG-TCCATTNA--TCAACCTCTTTATTACACGTGCTTC-TAA-AT--TATGTGTACACA--TACTTTNTTTATATTTTAACCGAGTNTAAA---A------TGAAAGAAAA----------ATAATAATAAAAA--CAAT---TTTAATTTAAAA-----CAAAAAGAAA





Alignments
lowQualScore                  :                                 1111111                                                                                                           1111111111                   111            11111          
lowQualScore                  :     55            3 777777      7777777     1 33                         2   2  55            33      4              7   1    444 777777          0000000000             44    111   3        77777          
lowQualScore                  :     ..            . ......      .......     . ..                         .   .  ..            ..      .              .   .    ... ......          ..........             ..    ...   .        .....          
lowQualScore                  :     99            2 222222      8888888     0 11                         2   2  66            22      1              1   0    444 222222          9999999999             22    444   4        00000          
consensus                     : TTAC--CACTACAAGGCAAT------GCTCAT-GATG-TCCATTNA--TCAACCTCTTTATTACACGTGCTTC-TAA-AT--TATGTGTACACA--TACTTTNTTTATATTTTAACCGAGTNTAAA---A------TGAAAGAAAA----------ATAATAATAAAAA--CAAT---TTTAATTTAAAA-----CAAAAAGAAA
Reference ( family-870 )      : TTAC--CACTACAAGGCAAT------GCTCAT-GATG-TCCATTNA--TCAACCTCTTTATTACACGTGCTTC-TAA-AT--TATGTGTACACA--TACTTTNTTTATATTTTAACCGAGTNTAAA---A------TGAAAGAAAA----------ATAATAATAAAAA--CAAT---TTTAATTTAAAA-----CAAAAAGAAA
gi|143073                     : TTAC--CACTACAAGGCAAT------GCTCAT-GATG-TCCATTTA--TCAACCTCTTTATTACACGTGCTTC-TAA-AT--TATGTTTACACA--TACTTTATTTATATTTTAACCGAGTATAAA---A------TGAAAGAAAA----------ATAGTAATAAAAA--CAAT---TTTAATTTAAAA-----CAAAAAGAAA
gi|143074                     : TCAC--CACTACAAGGCAAT------GCTCAT-GATG-TCCTTTAA--TCAACCTTTTTATTACACGTGCTTC-TAA-AT--TATGTGTACACA--TACTTTATTTATATTTTAACCGCGTGTAAA---A------TGAAAGAAAA----------ATAATAATAAAAA--CAAT---TTTAATTTAAAA-----CTAAAAGAAA
gi|143075                     : TTAC--CACTACAAGGTAAT------GCTCAT-GATT-TCCATTAA--TCAACCTCTTTATTACACGTGCTTC-TAA-AT--TATGTTTACAGA--TACTTTATTTATATTTTAACCGAGTATAAG---A------TGAAAG-AAA----------ATAATAATAAAAA--CATT---TTTAATTAAAAA-----CAAAAAGAAA
gi|143076                     : TTAT--CACTACAAGGCAATTTTAATGCTCAT-GATG-TCCATTTA--TCAACCTCTTTATTACACGTGCTTC-TAA-AT--TATATGTACACA--TACTTTCTTTATATTTTATCCGAGTATAAA---A------T-AAAGAAAA----------ATAATAATAAAAA--CAAT---TTTAATTTGAAAAAT--TAAAAAAAAA
gi|143077                     : TCAC--CACTACAAGGCAAT------GCTCAT-GAAG-TCCATTAA--TCAACCTCTTTATTACACTAGCTTC-TAT-AT--TA-GTGTACACC--TACTTTATTTATATTTCAACCGAGTATAAA---A------TAAAAGAAAA----------ATAATAATAAAAT--TTTT---TTTAATTTAAAA-----CAAAAAGAAA
gi|143078                     : TTAC--CACTACAAGGCAAT------GTTCAT-GATA-TCAATTAA--TCAACCTCTTTATTACGCGTGCTTC-TAA-ATC-TATGTGTACACA--TACTTTATCTATATTTTAACCGAGTATAAA---A------TGAAAGAAAA----------ATAATA
gi|143079                     : TTAC--CACTACAAGGCAAT------GCTCAT-GATG-TCCATGAA--TCAACCTCTTTATTACACGTGCTTC-TAA-AT--TATGAGTACACA--TACTTTATTTTTATTTAAACCGAGTATAAA---A------TGAAAGAAAA----------
gi|143080                     : TTAT--CACTACAATGCAAT------GTTCATTGATG-TCCATAAA--TCAACCTCTTTATTACACGTGCTTC-T-------------TACATAAGTACTTTATTTATATTTTAACCGAGTCTAAA---A------TGAAAGAAAA----------TTAATAATAATAA--CAAT---TTTAATTTAAAA-----CAAAAATAAA
gi|143081                     : TTACATCACTGCAAGGCACT------GCTCAT-------CCATTAA--TCAACCTCTTTATTA-----G-TTC-TGA-AT--TATGTGTACACA--TACTTTCTTTATATTTTAACCTATTCTAAA---A------TGAAAGAAAA----------ATAATAATAAAAA--CAA
gi|143082                     : TTAT--CACTACAAGGCACT------GCTCAT-------CCATTCA--TCAACCTCTTTATTACAGGCAATTT-TAA-AT--TATGTCTACACA--TACTTT-TTTATATTTGAACCTTGTCTAAA---A------TGAATGAAAA----------ATAATAATAAAAA--CAAA---TTTATTTTAAAAACCCCCAAAAA
gi|143083                     : TTAT--CACAACAAGGCATT------GCTCAT-------CCATTT---TCAACCTCTTTATTGCATGCGCTTC-TAA-AT--TATATGTAC--------TTTCTTTATATTTTTACCTATTGTAAG---A------TGAAAGAAA-------------AATAATAAAAA--CAAT---TTT
gi|143084                     : TTAT--CACTGTAAGGCACT------GCTCAC-------TCATTTA--TCAACCTTTTTATTATACGTGTTTCGCAATAT--TATAAATACACA--TACATTTTTTATATCTTAATC-AGTCTAAATTTACAAATTTAAAAGAAAA----------ATA
gi|143085                     : TTAT--CTCTACAAGGCACT------CCGCAT-------CCATTTA--TTAACCTCTTTATTACACGTTCTT--------------TG----CA--TACTTTTGTCATATTTCAAACCAGTCTAAA---A------TGAAAGAAAACTACATAAATGTAATAATAAAAA--TAATTA-TTTTTTTTAAAA-----
gi|143086                     : TTACT-CGCCACCAGGCA---------CTCGT-CAT---CCTTTTA--ACAACCTAT--ATTGCACGCGCTTC-TAA-AT--TATGTGTACACA--TACT------AAATCTAAA-----TCTAAA---A------TGAGAGAAAC----------ATTAT-ATAAAAAAGAAATTCATTT--TTTAGAA-----GAAAAAAAAa
gi|143087                     : TTAT--CATTACAAGGCACT------G---AT---TA-CCTATTTAATTCAACCTCTTTATTACACATGTTAC-TAA-A
gi|143088                     :   AC--CACTACAATGTAAT------GCTCAT-GATG-TCAATTAA--TCAACCTCTTTATTACACGTGCTTC-TAA-AT--TATGTGTACACA--TATTTTATTTATATTTTAACCAAGTATAAA---A------TGAAAGAAAA----------ATAATAATTAAAA--CAAT---TTT-ATTTAACA-----CAAAAAGAAA
gi|143089                     :                               AT-AATGATCCATTTA--TTAGCCTCTGTATTGCACGTTTTAC-TAA-ATATTATGTGTAAACA--TATTTTCTTTATATTTCCATC-AGTAT
gi|143090                     :                                        CCATTTA--TCAACCTCTTTATTACACGTCCTTC-TAA-AT--TATGTGTTAACA--TACTTTCTTTTTATTTTATCC-AGTCTAAA---A------TGAAAGAAAA----------ATAATAATAAAAA--CA