lowQualScore : 1
lowQualScore : 4 4 7 44 44 44 6666 1 6 5 444 66666 33 33 33 3 3 4 6 0
lowQualScore : . . . .. .. .. .... . . . ... ..... .. .. .. . . . . .
lowQualScore : 0 0 4 22 22 22 5555 2 3 0 777 77777 99 99 99 3 3 5 6 7
consensus : GTTCCCTGCTGTTCCTACTTGGAAATG-AAAACCACATCTCC-AAAGAAATACCCTGTCTTTTTT--GTATTG--A--ACTTTTT----CTTTTATTATGCTGTTCAATTTATAATTTTCATT---A-----TAATTATA--GTTTG--ACATTTG--AGAAAAAAAATCCAGTGGATT-AAAAGAAAGAAGTTTTATACAGGTTTTGTAGTTAAACTGTTCTAAATATTTATACAATCACATACAGTAGACTTTATTCTTTC
Reference ( gi|131039 ) : GTTCCCTGCTGTTCCTACTTGGAAATG-AAAACCACATCTCC-AAGGAAATACCCTGTCCTTTTT--GTATTG--A--ACTTTTT----CTTTTATTATGCTATTCAATTTATAACTTTCATT---A-----TAATTATA--GTTTG--ACATTTG--AAAAAAAAAATCCAGTGGATT-AGAA-AAAGAAGTTTTATACTGGTTTTGTAGTTAAACTGTCCTAAATATTTATACAATCACATACAGTAGACTTTATTCTTTC
gi|131036 : GTTCCCTGGTGTTCCTACTTGGAAATG-AAAACCACATCTCC-AAGGAAATACCCTGTCTTTTTT--GTATTG--A--ACTTTTT----CATTTATTATGCTGTTCAATTTATAACTTTCATT---A-----TAATTATG--GTTTG--ACATTTG--AGAAAAAAAATCCAATGGATT-AAAAGAAAGACATTTTATACAGGTTTTGCAGTTAAACTATTCTAAATATTTATCCTATCTCATACAGTAGACTTTACTCTGTC
gi|131037 : GTTCCCTGCTGTTCCTACTTGGAAATG-AAAACCACATATCC-AAGGAAATACCCTGTCTTTTTT--GTATTG--A--ACTTTTT----CTTTTATTATGCTGTTCAATTTATAATTTTCATT---ATACCGTAATTATG--GTTTG--ACATTTG--AGAAAAAAAATCCAATGGATT-AAAAGAAAGAAGTTTTATACAGGTTTTGCAGTTAATCTATTCTAAATATTTATCCAATCTCATACAGTAGACTTTACTC
gi|131038 : GTTCTCTGCTGTTCCTATTTGGAAATG-AAAACCACATCTCC-AAAGAAATACCCTGTCTTTTTT--GTATTG--A--ACTTTTT----CTTTTATTATGCTGTTCAATTTATAACTTTCATT---A-----TAATCATG--TTTTG--ACATTTG--AGAAAAAAAATCCAATGGATT-AAAAGAAAGAAGTTTTATACAGGTTTTGCAGTTAAACTATTCTAAATATGTATCCATTCTCATACAGTAGACTTTACTCTGTCcgtc
gi|131040 : GTTCCTTGCTGTTCCTAC------------------ATCTCC-AAAGAAATACCCTGTCTTTTTT--GCATTG--A--ACTTTTC----CTTTTATTATACTGTTCAATTTATAATTTTCATTATCA-----TAATTAAA--GTTTG--ACATTTG--AGAAAAAAAATCCAATGGATT-AAAAGAAAGAAGTTTTATACAGATTTTGCAGTTAAACTGTTCTAAATAGTTATACAATCACATACAGTATACTTTATTCTTTC
gi|131041 : GTTCCCTGCTGTTGATACTTGGTAATG-AAAACCACATCTCC-AAATAAATACTTTGTCTTTTTT--GTATTG--A--ACTTTTT----CTTTAATTATGCTGTTCAATTTATAATTTTCATT---A-----
gi|131042 : TTCCCTGCTGTTCCTACTTGGAAATG-AAAACCACATCTCC-AAGGAAATACCCTGTCTTTTTT--GTAGTG--A--ATTTTTT----CTTTTATTATGCTGTTCAATTTATAATTTTCAAT---A-----TAATTATA--GTTTG--ACATTTG--AAAAAAAAA---CAGTGGATT-AGA------AAGTTTTATACTGG-TTTGTAGTTAAACTGTCCTAAATATTTATACAATCACATACAGTAGACTTTATTCTTTC
gi|131043 : TTCC--GCTATTTCAACATGAAAACC-AAAATCATATCTCC-AAAGAAAAGCCCTGT-CTTTCT--GTATTG--AATATTTTTT----CATTCATTAT--T-TTTAATT--TAATTTTCA-----A-----TGTTTAT----TTTC--TCATTT---CAAATAAAAATCCAGTTGA
gi|131044 : TGTTCTTACTTGAAAAAGCAAAGTCACATCTCCAAAAGAAATATTTTGTCTTTTTT---TATTGCTA--TGTTTTTTGTACTGTAATTTTGTTATT-A---TATAA--TTCG-T---A-----TTGTTAAACCGTTTGGAATATCTGGTAGAAATAAAA
gi|131045 : GTTCCTACTTGGAAATG-AAAACCACATCTCC-AAGGAAATACCCTGTA-TTTTT--GTATTG--A--ACTTTTT----CTTTTATTATGCTGTTCAATTTATAACTTTCATT---A-----TAATTAAG--GTTTG--ATATTTG--AGGAAAAAAAATCAATGGATTGAAAG-AAAGAAGTTTCATACAGGTTTTGTAGTTAAACTATTCTAAATATTTATCCAATCTCATACAGTAGACTTTACTCTGTC
gi|131046 : GTTCCTACTTGGGATTG-AAAACCACATCTCA-AAAGAAATACCCTGTTTCTTTT--GTATTG--A--ACATTTT----CTTTTA-TATGATGTTCAATTTATAATTTTCATT---A-----TAATTATA--GTTTG--ACATATG---AGAAAGAAATCCAATAGATT-AAAG-AAAGAAGTTTTATAC
gi|131049 : TACTCTGTCTTTTTT--GTATTG--A--ACTTTTT----CTTTTATAAAGATGTTTAATTGATCATTTTCATT---A-----TAATTATA--GTTTG--ACATTTG---AAAAAAAAATCCAGTGGAGT-AGAA-AAAGAAG-TTTATACTGGTTTTGTAGTTAAACTGTCCTAAATATTTATACAATCACATACAGTAGACTTTATTCTTTCag
gi|131048 : TACTCTGTCTTTTTT--GTATTG--A--ACTTTTT----CTTTTATAAAGATGTTCAATTGATAATTTTCATT---A-----TAACTATA--GTTTG--ACATGTG--AAAA-AAAAATCTAGTGGATT-AGAA-AAAGAAATTTTATACTGGTTTTGTAGTTAAACTGTCCGAAATATTTATATAATCACATACAGTAGACTTTATTCTTTC
gi|131047 : TACTCCGTCTTTTTTTTGTACTG--G--ACTTTTT----CTTTTATAAAGATGTTCAGTTGGTAGTTTTCATT---A-----TAATTATA--GTTTG--ACATTTG--AAAAAAAAAATCCAGGGGATT-AGAA-AAAGAAGTTTTATACTGGTTTTGTAGATAAACTGTCCTAAATATTGATACAATCACATACAGTAGACTTTATTCTTTC
gi|131050 : TGTTATTTAATCTGTATTTTCCATT---T-----TAATTATA--GTTTG--ACAATTT--AAAGTAAAAATCCAGTGGATT-A
gi|131051 : T---A-----TAATTATA--GTTTG--ACATTTG--AGAAAAAAAAAACAGTGGATT-A-AA-AAAGAAAAATTATACAGGTTTTGTAGTTAAACTCTTCTAAATATTTACACAATCACATACAGTAGACTTTATTCTTTC
gi|131053 : GATTTTGTTGTTAAATTGCTTTGAATATTTATACAATCATGTACAGTAGACTTTGTTCT
gi|131052 : TTTTGTGGTTAAATTGCTTTAAATATTTATACAATCAAGTACAGTAGACTT
Alignments
lowQualScore : 1
lowQualScore : 3 3 33 33 2 2 555 0 2 88888 444 33 33 4 0 1 3
lowQualScore : . . .. .. . . ... . . ..... ... .. .. . . . .
lowQualScore : 6 6 99 99 9 9 000 5 7 88888 777 77 77 3 1 0 1
consensus : GTTCCCTGCTGTTCCTACTTGGAAATG-AAAACCACATCTCCAAG-GAAATACCCTGTCTTTTTT--GTATTGA--ACT-T-TTTCTTTTATT---ATGCTGTTCAATT-TATAATTTTCATTA-----T---AATTATAGTTTG--ACATTTG--AGAAAAAAAATCCAGTGGATTAAAAGAAAGAAGTTTTATACAGGTTTT-GTAGTTAAACTGTTCTAAATATTTATACAATCACATACAGTAGACTTTATTCTTTC
Reference ( family-867 ) : GTTCCCTGCTGTTCCTACTTGGAAATG-AAAACCACATCTCCAAA-GAAATACCCTGTCTTTTTT--GTATTGA--ACT-T-TTTCTTTTATT---ATGCTGTTCAATT-TATAATTTTCATTA-----T---AATTATAGTTTG--ACATTTG--AGAAAAAAAATCCAGTGGATTAAAAGAAAGAAGTTTTATACAGGTTTT-GTAGTTAAACTGTTCTAAATATTTATACAATCACATACAGTAGACTTTATTCTTTC
gi|131036 : GTTCCCTGGTGTTCCTACTTGGAAATG-AAAACCACATCTCCAAG-GAAATACCCTGTCTTTTTT--GTATTGA--ACT-T-TTTCATTTATT---ATGCTGTTCAATT-TATAACTTTCATTA-----T---AATTATGGTTTG--ACATTTG--AGAAAAAAAATCCAATGGATTAAAAGAAAGACATTTTATACAGGTTTT-GCAGTTAAACTATTCTAAATATTTATCCTATCTCATACAGTAGACTTTACTCTGTC
gi|131037 : GTTCCCTGCTGTTCCTACTTGGAAATG-AAAACCACATATCCAAG-GAAATACCCTGTCTTTTTT--GTATTGA--ACT-T-TTTCTTTTATT---ATGCTGTTCAATT-TATAATTTTCATTATACCGT---AATTATGGTTTG--ACATTTG--AGAAAAAAAATCCAATGGATTAAAAGAAAGAAGTTTTATACAGGTTTT-GCAGTTAATCTATTCTAAATATTTATCCAATCTCATACAGTAGACTTTACTC
gi|131038 : GTTCTCTGCTGTTCCTATTTGGAAATG-AAAACCACATCTCCAAA-GAAATACCCTGTCTTTTTT--GTATTGA--ACT-T-TTTCTTTTATT---ATGCTGTTCAATT-TATAACTTTCATTA-----T---AATCATGTTTTG--ACATTTG--AGAAAAAAAATCCAATGGATTAAAAGAAAGAAGTTTTATACAGGTTTT-GCAGTTAAACTATTCTAAATATGTATCCATTCTCATACAGTAGACTTTACTCTGTCcgtc
gi|131039 : GTTCCCTGCTGTTCCTACTTGGAAATG-AAAACCACATCTCCAAG-GAAATACCCTGTCCTTTTT--GTATTGA--ACT-T-TTTCTTTTATT---ATGCTATTCAATT-TATAACTTTCATTA-----T---AATTATAGTTTG--ACATTTG--AAAAAAAAAATCCAGTGGATTAGAA-AAAGAAGTTTTATACTGGTTTT-GTAGTTAAACTGTCCTAAATATTTATACAATCACATACAGTAGACTTTATTCTTTC
gi|131040 : GTTCCTTGCTGTTCCTAC------------------ATCTCCAAA-GAAATACCCTGTCTTTTTT--GCATTGA--ACT-T-TTCCTTTTATT---ATACTGTTCAATT-TATAATTTTCATTA-----TCATAATTAAAGTTTG--ACATTTG--AGAAAAAAAATCCAATGGATTAAAAGAAAGAAGTTTTATACAGATTTT-GCAGTTAAACTGTTCTAAATAGTTATACAATCACATACAGTATACTTTATTCTTTC
gi|131041 : GTTCCCTGCTGTTGATACTTGGTAATG-AAAACCACATCTCCAAA-TAAATACTTTGTCTTTTTT--GTATTGA--ACT-T-TTTCTTTAATT---ATGCTGTTCAATT-TATAATTTTCATTA-----
gi|131042 : TTCCCTGCTGTTCCTACTTGGAAATG-AAAACCACATCTCCAAG-GAAATACCCTGTCTTTTTT--GTAGTGA--ATT-T-TTTCTTTTATT---ATGCTGTTCAATT-TATAATTTTCAATA-----T---AATTATAGTTTG--ACATTTG--AAAAAAAAA---CAGTGGATTAGA------AAGTTTTATACTGG-TTT-GTAGTTAAACTGTCCTAAATATTTATACAATCACATACAGTAGACTTTATTCTTTC
gi|131043 : TTCC--GCTATTTCAACATGAAAACC-AAAATCATATCTCCAAA-GAAAAGCCCTGTC-TTTCT--GTATTGAATATT-T-TTTCATTCATT---AT--T-TTTAATT---TAATTTTCA--A-----T---GTTTAT--TTTC--TCATTTC--A-AATAAAAATCCAGTTGA
gi|131044 : TGTTCTTACTTGAAAAAGCAAAGTCACATCTCCAAAAGAAATATTTTGTCTTTTTT---TATTG----CTATGTTTTTTGTACTGTAATTTTGTT--ATTATATAATTCGTATTGT----T---AA--ACCGTTTGGAATATCTGGTAGAAATAAAA
gi|131045 : GTTCCTACTTGGAAATG-AAAACCACATCTCCAAG-GAAATACCCTGTATTTT-T--GTATTGA--ACT-T-TTTCTTTTATT---ATGCTGTTCAATT-TATAACTTTCATTA-----T---AATTAAGGTTTG--ATATTTG--AGGAAAAAAAATCAATGGATTGAAAGAAAGAAGTTTCATACAGGTTTT-GTAGTTAAACTATTCTAAATATTTATCCAATCTCATACAGTAGACTTTACTCTGTC
gi|131046 : GTTCCTACTTGGGATTG-AAAACCACATCTCAAAA-GAAATACCCTGTTTCTTTT--GTATTGA--ACA-T-TTTCTTTTA-T---ATGATGTTCAATT-TATAATTTTCATTA-----T---AATTATAGTTTG--ACATATG--AG-AAAGAAATCCAATAGATT-AAAGAAAGAAGTTTTATACAG
gi|131047 : TACTCCGTCTTTTTTTTGTACTGG--ACT-T-TTTCTTTTATA---AAGATGTTCAGTT-GGTAGTTTTCATTA-----T---AATTATAGTTTG--ACATTTG--AAAAAAAAAATCCAGGGGATTAGAA-AAAGAAGTTTTATACTGGTTTT-GTAGATAAACTGTCCTAAATATTGATACAATCACATACAGTAGACTTTATTCTTTC
gi|131048 : TACTCTGTCTTTTTT--GTATTGA--ACT-T-TTTCTTTTATA---AAGATGTTCAATT-GATAATTTTCATTA-----T---AACTATAGTTTG--ACATGTG--A-AAAAAAAATCTAGTGGATTAGAA-AAAGAAATTTTATACTGGTTTT-GTAGTTAAACTGTCCGAAATATTTATATAATCACATACAGTAGACTTTATTCTTTC
gi|131049 : TACTCTGTCTTTTTT--GTATTGA--ACT-T-TTTCTTTTATA---AAGATGTTTAATT-GATCATTTTCATTA-----T---AATTATAGTTTG--ACATTTG--A-AAAAAAAATCCAGTGGAGTAGAA-AAAGAAG-TTTATACTGGTTTT-GTAGTTAAACTGTCCTAAATATTTATACAATCACATACAGTAGACTTTATTCTTTC
gi|131050 : TGTTATTTAATC-TGTATTTTCCATTT-----T---AATTATAGTTTG--ACAATTT--AAAGTAAAAATCCAGTGGATTA
gi|131051 : TA-----T---AATTATAGTTTG--ACATTTG--AGAAAAAAAAAACAGTGGATTAAAAAAGAAAAATT--ATACAGGTTTT-GTAGTTAAACTCTTCTAAATATTTACACAATCACATACAGTAGACTTTATTCTTTC
gi|131052 : CAGGTTTTTGTGGTTAAATTGCTTTAAATATTTATACAATCAAGTACAGTAGACTT
gi|131053 : GATTTT-GTTGTTAAATTGCTTTGAATATTTATACAATCATGTACAGTAGACTTTGTTCT
Alignments
lowQualScore : 1
lowQualScore : 3 3 33 33 2 2 555 0 2 88888 444 33 33 4 0 1 3
lowQualScore : . . .. .. . . ... . . ..... ... .. .. . . . .
lowQualScore : 6 6 99 99 9 9 000 5 7 88888 777 77 77 3 1 0 1
consensus : GTTCCCTGCTGTTCCTACTTGGAAATG-AAAACCACATCTCCAAG-GAAATACCCTGTCTTTTTT--GTATTGA--ACT-T-TTTCTTTTATT---ATGCTGTTCAATT-TATAATTTTCATTA-----T---AATTATAGTTTG--ACATTTG--AGAAAAAAAATCCAGTGGATTAAAAGAAAGAAGTTTTATACAGGTTTT-GTAGTTAAACTGTTCTAAATATTTATACAATCACATACAGTAGACTTTATTCTTTC
Reference ( family-867 ) : GTTCCCTGCTGTTCCTACTTGGAAATG-AAAACCACATCTCCAAG-GAAATACCCTGTCTTTTTT--GTATTGA--ACT-T-TTTCTTTTATT---ATGCTGTTCAATT-TATAATTTTCATTA-----T---AATTATAGTTTG--ACATTTG--AGAAAAAAAATCCAGTGGATTAAAAGAAAGAAGTTTTATACAGGTTTT-GTAGTTAAACTGTTCTAAATATTTATACAATCACATACAGTAGACTTTATTCTTTC
gi|131036 : GTTCCCTGGTGTTCCTACTTGGAAATG-AAAACCACATCTCCAAG-GAAATACCCTGTCTTTTTT--GTATTGA--ACT-T-TTTCATTTATT---ATGCTGTTCAATT-TATAACTTTCATTA-----T---AATTATGGTTTG--ACATTTG--AGAAAAAAAATCCAATGGATTAAAAGAAAGACATTTTATACAGGTTTT-GCAGTTAAACTATTCTAAATATTTATCCTATCTCATACAGTAGACTTTACTCTGTC
gi|131037 : GTTCCCTGCTGTTCCTACTTGGAAATG-AAAACCACATATCCAAG-GAAATACCCTGTCTTTTTT--GTATTGA--ACT-T-TTTCTTTTATT---ATGCTGTTCAATT-TATAATTTTCATTATACCGT---AATTATGGTTTG--ACATTTG--AGAAAAAAAATCCAATGGATTAAAAGAAAGAAGTTTTATACAGGTTTT-GCAGTTAATCTATTCTAAATATTTATCCAATCTCATACAGTAGACTTTACTC
gi|131038 : GTTCTCTGCTGTTCCTATTTGGAAATG-AAAACCACATCTCCAAA-GAAATACCCTGTCTTTTTT--GTATTGA--ACT-T-TTTCTTTTATT---ATGCTGTTCAATT-TATAACTTTCATTA-----T---AATCATGTTTTG--ACATTTG--AGAAAAAAAATCCAATGGATTAAAAGAAAGAAGTTTTATACAGGTTTT-GCAGTTAAACTATTCTAAATATGTATCCATTCTCATACAGTAGACTTTACTCTGTCcgtc
gi|131039 : GTTCCCTGCTGTTCCTACTTGGAAATG-AAAACCACATCTCCAAG-GAAATACCCTGTCCTTTTT--GTATTGA--ACT-T-TTTCTTTTATT---ATGCTATTCAATT-TATAACTTTCATTA-----T---AATTATAGTTTG--ACATTTG--AAAAAAAAAATCCAGTGGATTAGAA-AAAGAAGTTTTATACTGGTTTT-GTAGTTAAACTGTCCTAAATATTTATACAATCACATACAGTAGACTTTATTCTTTC
gi|131040 : GTTCCTTGCTGTTCCTAC------------------ATCTCCAAA-GAAATACCCTGTCTTTTTT--GCATTGA--ACT-T-TTCCTTTTATT---ATACTGTTCAATT-TATAATTTTCATTA-----TCATAATTAAAGTTTG--ACATTTG--AGAAAAAAAATCCAATGGATTAAAAGAAAGAAGTTTTATACAGATTTT-GCAGTTAAACTGTTCTAAATAGTTATACAATCACATACAGTATACTTTATTCTTTC
gi|131041 : GTTCCCTGCTGTTGATACTTGGTAATG-AAAACCACATCTCCAAA-TAAATACTTTGTCTTTTTT--GTATTGA--ACT-T-TTTCTTTAATT---ATGCTGTTCAATT-TATAATTTTCATTA-----
gi|131042 : TTCCCTGCTGTTCCTACTTGGAAATG-AAAACCACATCTCCAAG-GAAATACCCTGTCTTTTTT--GTAGTGA--ATT-T-TTTCTTTTATT---ATGCTGTTCAATT-TATAATTTTCAATA-----T---AATTATAGTTTG--ACATTTG--AAAAAAAAA---CAGTGGATTAGA------AAGTTTTATACTGG-TTT-GTAGTTAAACTGTCCTAAATATTTATACAATCACATACAGTAGACTTTATTCTTTC
gi|131043 : TTCC--GCTATTTCAACATGAAAACC-AAAATCATATCTCCAAA-GAAAAGCCCTGTC-TTTCT--GTATTGAATATT-T-TTTCATTCATT---AT--T-TTTAATT---TAATTTTCA--A-----T---GTTTAT--TTTC--TCATTTC--A-AATAAAAATCCAGTTGA
gi|131044 : TGTTCTTACTTGAAAAAGCAAAGTCACATCTCCAAAAGAAATATTTTGTCTTTTTT---TATTG----CTATGTTTTTTGTACTGTAATTTTGTT--ATTATATAATTCGTATTGT----T---AA--ACCGTTTGGAATATCTGGTAGAAATAAAA
gi|131045 : GTTCCTACTTGGAAATG-AAAACCACATCTCCAAG-GAAATACCCTGTATTTT-T--GTATTGA--ACT-T-TTTCTTTTATT---ATGCTGTTCAATT-TATAACTTTCATTA-----T---AATTAAGGTTTG--ATATTTG--AGGAAAAAAAATCAATGGATTGAAAGAAAGAAGTTTCATACAGGTTTT-GTAGTTAAACTATTCTAAATATTTATCCAATCTCATACAGTAGACTTTACTCTGTC
gi|131046 : GTTCCTACTTGGGATTG-AAAACCACATCTCAAAA-GAAATACCCTGTTTCTTTT--GTATTGA--ACA-T-TTTCTTTTA-T---ATGATGTTCAATT-TATAATTTTCATTA-----T---AATTATAGTTTG--ACATATG--AG-AAAGAAATCCAATAGATT-AAAGAAAGAAGTTTTATACAG
gi|131047 : TACTCCGTCTTTTTTTTGTACTGG--ACT-T-TTTCTTTTATA---AAGATGTTCAGTT-GGTAGTTTTCATTA-----T---AATTATAGTTTG--ACATTTG--AAAAAAAAAATCCAGGGGATTAGAA-AAAGAAGTTTTATACTGGTTTT-GTAGATAAACTGTCCTAAATATTGATACAATCACATACAGTAGACTTTATTCTTTC
gi|131048 : TACTCTGTCTTTTTT--GTATTGA--ACT-T-TTTCTTTTATA---AAGATGTTCAATT-GATAATTTTCATTA-----T---AACTATAGTTTG--ACATGTG--A-AAAAAAAATCTAGTGGATTAGAA-AAAGAAATTTTATACTGGTTTT-GTAGTTAAACTGTCCGAAATATTTATATAATCACATACAGTAGACTTTATTCTTTC
gi|131049 : TACTCTGTCTTTTTT--GTATTGA--ACT-T-TTTCTTTTATA---AAGATGTTTAATT-GATCATTTTCATTA-----T---AATTATAGTTTG--ACATTTG--A-AAAAAAAATCCAGTGGAGTAGAA-AAAGAAG-TTTATACTGGTTTT-GTAGTTAAACTGTCCTAAATATTTATACAATCACATACAGTAGACTTTATTCTTTC
gi|131050 : TGTTATTTAATC-TGTATTTTCCATTT-----T---AATTATAGTTTG--ACAATTT--AAAGTAAAAATCCAGTGGATTA
gi|131051 : TA-----T---AATTATAGTTTG--ACATTTG--AGAAAAAAAAAACAGTGGATTAAAAAAGAAAAATT--ATACAGGTTTT-GTAGTTAAACTCTTCTAAATATTTACACAATCACATACAGTAGACTTTATTCTTTC
gi|131052 : CAGGTTTTTGTGGTTAAATTGCTTTAAATATTTATACAATCAAGTACAGTAGACTT
gi|131053 : GATTTT-GTTGTTAAATTGCTTTGAATATTTATACAATCATGTACAGTAGACTTTGTTCT
blockSeqs : C A TT AT A G GTA A TACCG CAT GA GT G G A T
blockSeqs : . . . . . . . . T . . . G G A .
blockSeqs : . . . . . . . . . . . . A G T .
blockSeqs : . . . . . . . . . . . . G G A .
blockSeqs : . . . . . . . . . . . . A G T .
blockSeqs : . . . . . . . . . . . . G A A .
blockSeqs : . . . . . . . . . . . . G . A .
blockSeqs : . . . . . . . . . . . . G . T .
blockSeqs : . . . . . . . . . . . . A . T .
blockSeqs : . . . . . . . . . . . . A . T .
blockSeqs : . . . . . . . . . . G . A .
blockSeqs : . . . . . . . . . . . A .
blockSeqs : . . . . . . . . . . .
blockSeqs : . . . . . .
blockSeqs : .
blockSeqCons :
originalCons : GTTCCCTGCTGTTCCTACTTGGAAATG-AAAACCACATCTCCAAG-GAAATACCCTGTCTTTTTT--GTATTGA--ACT-T-TTTCTTTTATT---ATGCTGTTCAATT-TATAATTTTCATTA-----T---AATTATAGTTTG--ACATTTG--AGAAAAAAAATCCAGTGGATTAAAAGAAAGAAGTTTTATACAGGTTTT-GTAGTTAAACTGTTCTAAATATTTATACAATCACATACAGTAGACTTTATTCTTTC
finalCons : GTTCCCTGCTGTTCCTACTTGGAAATG-AAAACCACATCTCCAAG-GAAATACCCTGTCTTTTTT--GTATTGA--ACT-T-TTTCTTTTATT---ATGCTGTTCAATT-TATAATTTTCATTA-----T---AATTATAGTTTG--ACATTTG--AGAAAAAAAATCCAGTGGATTAAAAGAAAGAAGTTTTATACAGGTTTT-GTAGTTAAACTGTTCTAAATATTTATACAATCACATACAGTAGACTTTATTCTTTC
Alignments
lowQualScore : 1
lowQualScore : 3 3 33 33 2 2 555 0 2 88888 444 33 33 4 0 1 3
lowQualScore : . . .. .. . . ... . . ..... ... .. .. . . . .
lowQualScore : 6 6 99 99 9 9 000 5 7 88888 777 77 77 3 1 0 1
consensus : GTTCCCTGCTGTTCCTACTTGGAAATG-AAAACCACATCTCCAAG-GAAATACCCTGTCTTTTTT--GTATTGA--ACT-T-TTTCTTTTATT---ATGCTGTTCAATT-TATAATTTTCATTA-----T---AATTATAGTTTG--ACATTTG--AGAAAAAAAATCCAGTGGATTAAAAGAAAGAAGTTTTATACAGGTTTT-GTAGTTAAACTGTTCTAAATATTTATACAATCACATACAGTAGACTTTATTCTTTC
Reference ( family-867 ) : GTTCCCTGCTGTTCCTACTTGGAAATG-AAAACCACATCTCCAAG-GAAATACCCTGTCTTTTTT--GTATTGA--ACT-T-TTTCTTTTATT---ATGCTGTTCAATT-TATAATTTTCATTA-----T---AATTATAGTTTG--ACATTTG--AGAAAAAAAATCCAGTGGATTAAAAGAAAGAAGTTTTATACAGGTTTT-GTAGTTAAACTGTTCTAAATATTTATACAATCACATACAGTAGACTTTATTCTTTC
gi|131036 : GTTCCCTGGTGTTCCTACTTGGAAATG-AAAACCACATCTCCAAG-GAAATACCCTGTCTTTTTT--GTATTGA--ACT-T-TTTCATTTATT---ATGCTGTTCAATT-TATAACTTTCATTA-----T---AATTATGGTTTG--ACATTTG--AGAAAAAAAATCCAATGGATTAAAAGAAAGACATTTTATACAGGTTTT-GCAGTTAAACTATTCTAAATATTTATCCTATCTCATACAGTAGACTTTACTCTGTC
gi|131037 : GTTCCCTGCTGTTCCTACTTGGAAATG-AAAACCACATATCCAAG-GAAATACCCTGTCTTTTTT--GTATTGA--ACT-T-TTTCTTTTATT---ATGCTGTTCAATT-TATAATTTTCATTATACCGT---AATTATGGTTTG--ACATTTG--AGAAAAAAAATCCAATGGATTAAAAGAAAGAAGTTTTATACAGGTTTT-GCAGTTAATCTATTCTAAATATTTATCCAATCTCATACAGTAGACTTTACTC
gi|131038 : GTTCTCTGCTGTTCCTATTTGGAAATG-AAAACCACATCTCCAAA-GAAATACCCTGTCTTTTTT--GTATTGA--ACT-T-TTTCTTTTATT---ATGCTGTTCAATT-TATAACTTTCATTA-----T---AATCATGTTTTG--ACATTTG--AGAAAAAAAATCCAATGGATTAAAAGAAAGAAGTTTTATACAGGTTTT-GCAGTTAAACTATTCTAAATATGTATCCATTCTCATACAGTAGACTTTACTCTGTCcgtc
gi|131039 : GTTCCCTGCTGTTCCTACTTGGAAATG-AAAACCACATCTCCAAG-GAAATACCCTGTCCTTTTT--GTATTGA--ACT-T-TTTCTTTTATT---ATGCTATTCAATT-TATAACTTTCATTA-----T---AATTATAGTTTG--ACATTTG--AAAAAAAAAATCCAGTGGATTAGAA-AAAGAAGTTTTATACTGGTTTT-GTAGTTAAACTGTCCTAAATATTTATACAATCACATACAGTAGACTTTATTCTTTC
gi|131040 : GTTCCTTGCTGTTCCTAC------------------ATCTCCAAA-GAAATACCCTGTCTTTTTT--GCATTGA--ACT-T-TTCCTTTTATT---ATACTGTTCAATT-TATAATTTTCATTA-----TCATAATTAAAGTTTG--ACATTTG--AGAAAAAAAATCCAATGGATTAAAAGAAAGAAGTTTTATACAGATTTT-GCAGTTAAACTGTTCTAAATAGTTATACAATCACATACAGTATACTTTATTCTTTC
gi|131041 : GTTCCCTGCTGTTGATACTTGGTAATG-AAAACCACATCTCCAAA-TAAATACTTTGTCTTTTTT--GTATTGA--ACT-T-TTTCTTTAATT---ATGCTGTTCAATT-TATAATTTTCATTA-----
gi|131042 : TTCCCTGCTGTTCCTACTTGGAAATG-AAAACCACATCTCCAAG-GAAATACCCTGTCTTTTTT--GTAGTGA--ATT-T-TTTCTTTTATT---ATGCTGTTCAATT-TATAATTTTCAATA-----T---AATTATAGTTTG--ACATTTG--AAAAAAAAA---CAGTGGATTAGA------AAGTTTTATACTGG-TTT-GTAGTTAAACTGTCCTAAATATTTATACAATCACATACAGTAGACTTTATTCTTTC
gi|131043 : TTCC--GCTATTTCAACATGAAAACC-AAAATCATATCTCCAAA-GAAAAGCCCTGTC-TTTCT--GTATTGAATATT-T-TTTCATTCATT---AT--T-TTTAATT---TAATTTTCA--A-----T---GTTTAT--TTTC--TCATTTC--A-AATAAAAATCCAGTTGA
gi|131044 : TGTTCTTACTTGAAAAAGCAAAGTCACATCTCCAAAAGAAATATTTTGTCTTTTTT---TATTG----CTATGTTTTTTGTACTGTAATTTTGTT--ATTATATAATTCGTATTGT----T---AA--ACCGTTTGGAATATCTGGTAGAAATAAAA
gi|131045 : GTTCCTACTTGGAAATG-AAAACCACATCTCCAAG-GAAATACCCTGTATTTT-T--GTATTGA--ACT-T-TTTCTTTTATT---ATGCTGTTCAATT-TATAACTTTCATTA-----T---AATTAAGGTTTG--ATATTTG--AGGAAAAAAAATCAATGGATTGAAAGAAAGAAGTTTCATACAGGTTTT-GTAGTTAAACTATTCTAAATATTTATCCAATCTCATACAGTAGACTTTACTCTGTC
gi|131046 : GTTCCTACTTGGGATTG-AAAACCACATCTCAAAA-GAAATACCCTGTTTCTTTT--GTATTGA--ACA-T-TTTCTTTTA-T---ATGATGTTCAATT-TATAATTTTCATTA-----T---AATTATAGTTTG--ACATATG--AG-AAAGAAATCCAATAGATT-AAAGAAAGAAGTTTTATACAG
gi|131047 : TACTCCGTCTTTTTTTTGTACTGG--ACT-T-TTTCTTTTATA---AAGATGTTCAGTT-GGTAGTTTTCATTA-----T---AATTATAGTTTG--ACATTTG--AAAAAAAAAATCCAGGGGATTAGAA-AAAGAAGTTTTATACTGGTTTT-GTAGATAAACTGTCCTAAATATTGATACAATCACATACAGTAGACTTTATTCTTTC
gi|131048 : TACTCTGTCTTTTTT--GTATTGA--ACT-T-TTTCTTTTATA---AAGATGTTCAATT-GATAATTTTCATTA-----T---AACTATAGTTTG--ACATGTG--A-AAAAAAAATCTAGTGGATTAGAA-AAAGAAATTTTATACTGGTTTT-GTAGTTAAACTGTCCGAAATATTTATATAATCACATACAGTAGACTTTATTCTTTC
gi|131049 : TACTCTGTCTTTTTT--GTATTGA--ACT-T-TTTCTTTTATA---AAGATGTTTAATT-GATCATTTTCATTA-----T---AATTATAGTTTG--ACATTTG--A-AAAAAAAATCCAGTGGAGTAGAA-AAAGAAG-TTTATACTGGTTTT-GTAGTTAAACTGTCCTAAATATTTATACAATCACATACAGTAGACTTTATTCTTTC
gi|131050 : TGTTATTTAATC-TGTATTTTCCATTT-----T---AATTATAGTTTG--ACAATTT--AAAGTAAAAATCCAGTGGATTA
gi|131051 : TA-----T---AATTATAGTTTG--ACATTTG--AGAAAAAAAAAACAGTGGATTAAAAAAGAAAAATT--ATACAGGTTTT-GTAGTTAAACTCTTCTAAATATTTACACAATCACATACAGTAGACTTTATTCTTTC
gi|131052 : CAGGTTTTTGTGGTTAAATTGCTTTAAATATTTATACAATCAAGTACAGTAGACTT
gi|131053 : GATTTT-GTTGTTAAATTGCTTTGAATATTTATACAATCATGTACAGTAGACTTTGTTCT