lowQualScore : 11111
lowQualScore : 0 0 1 77777 7 4
lowQualScore : . . . ..... . .
lowQualScore : 8 8 1 66666 1 7
consensus : TATCATACCATGTGTCTGCGGCATGATACTCCAGTGTGGCAGCGCTTAGAATACTGTCTCAAGTAGACACCGTCG-----CGAT-ATGACTGAAAAATTGTTGAAAGCGACGCTAAACACCATACAACAA
Reference ( gi|54503 ) : TATCATACCATGTGTCTGCGGCATGATACTCCAGTGTGACAGCGCTTAGAATACTGTCTCAAGTAGACACCGTCG-----CGAT-ATGACTGAACAATTGTTGAAAGCGACGCTAAACACCATACAACAA
gi|54504 : TATCATACCATGTGTCTGCGGCATGATACTCCAGTGTGACAGCGCTTAGAATACTGTCTCAAGTAGACACCGTCG-----CGAT-ATGACTGAACAATTGTTGAAAGCAACGCTAAACACCATACAACAA
gi|54502 : TATCATACCATGTGTCTGCAGCATGATACTCCAGTGTGACAGCGCTTAGAATACTGTCTCAAGTAGACACTGTTG-----CGAT-ATGACTGAAAAATTGTTGAAAGCGACGCTAAACACCATACAACAA
gi|54500 : TATCATACCATGTGTCTGCGGCATGTTATTCCAGTATGACAGCGCTTAGAATACTGTCTCAAGTAGACACCGTCG-----CGAT-ATGACTGAAAAATTGTTGAAAGCGACGCTAAACACCATACAACAAcattatt
gi|54497 : TATCATACCACGTGTCTGCGGCATGATACTCCAGTGCGGCAGCGCTCAGAATACTGTCTCATGTAGACACCGTCG-----CGAT-ATGACTGAACAATTGTTGAAAGCGACGCTAAACACCATACAACAAcattattg
gi|54501 : TATCATACCACGTGTCTGCGGCATGATACTTCAGTGTGACAGCGCTTAGAATACTGTCTCAAGTAGACACCGTCG-----CGAT-ATGACTGAAAAATTGTTGAAAGCGATGCTAAACACCATACAA
gi|54499 : TATCATACCATGTGTCTGTGGCATGATACTCCAGTGTGATAGCGTTTAGAATACTGTCTCAAGTAGACACTGTCA-----CAAT-ATGACTGAAAAATTGTTGAAAGCGCCGCTAAACACCATACAACA
gi|54498 : TATCATACTATGTGTCTGCGGCATGATACGCCAGTGTGACAGCGCTTAGAATACTGTTTCAAGTAGACACCGTCG-----GGAT-ATGACTGAAAAATTGTTGAAAGTGACGCTAAACATGATACAACAAttattatt
gi|54496 : TATCATACCATGTGACTGTGGCATGATACTCCAGTGTGGCAGCACTTAGGATACTGTCTCAAGCAGACACTGTAG-----TG---ATGACTGAAAAATTGTTAAAAGCAGCGCTAAACACCATGCAACAA
gi|54495 : TATCATACCATGTATCTGTGGCATGATATTTCAGTGTGACAGCATTTAGAATACTGTCTCAAGTAGACACTGTTG-----CAAT-ATATTTGAAAAATTGTTTAAAGTGGCACTAAACACCATACAA
gi|54494 : TATCATAC-ATGTGTCTGTGGCATGATACTTTAGTTTGACAGCACTTAGAATACTGTCTCAAGTAGACACTGTCA-----CAAT-ATAACTGAACAATTGTTAAAAGTGATG-----CACCAAACAGCA
gi|54493 : TATCTTACTTGGTGTTTGTGGCA--GT-CTTTAGTCTGGCAGCATTT------CTGTTTCATGCAGACACTATTAGATTTTGATTATAATTGAGCAATT-TTGAAAGTTGTGCTAAATATCATATAAGAA
gi|54492 : TATCTTACTTGGTGTTTGTGGCA--GT-CTTTAGTCTGGCAGCATTT------CTGTTTCATGCAGACACTATTAGATTTTGATTATAATTGAGCAATT-TTGAAAGTTGTGCTAAATATCATATAAGAAtgctattggttgagcatgttaaggaaacataggaa
gi|54491 : TATCTTACTTGGTGTTTGTGGCA--GT-CTTTAGTCTGGCAGCATTT------CTGTTTCATGCAGACACTATTAGATTTTGATTATAATTGAGCAATT-TTGAAAGTTGTGCTAAATATCATATAAGAAtgctattggttgagcatgttaaggaaacataggaa
gi|54505 : GTGTCTGCGGCATTATACTCCAGTGTGACAGTGCTTAGAATACTGTCTCAAGTAGACACTGTCG-----CGAT-ATGACTGAAAAATTGTTGAAAGTGACGCTAAACACCATACAACAAtgctattggttgagcatgttaaggaaacataggaa
gi|54506 : GTGTCTGCAGCATGATATATCAGTGTGGTAGCACTCAGAATACTGTTTCAAGGAGACATCATTG-----TAAT-ATAACTGAAAATTTGTTGAAAGCAATGCTAAACATCATACAAAAA
gi|54507 : CTCTAGTGTGGCAGTGCTCAGAATACTGTTTCAAGTAGACACCATTG-----CGAT-ATGACTGAAAAATTGTTGAAAGCGGCGCTAAACACCATACAACAA
gi|54508 : CTTCAGTGTGGCAGCACTTCAAATACTGTCTCAAGTAGACACCATCA-----TGAT-ATGACCGAACAATTGTTGAAAACGAAGCTAAACACCATGCAACAAatgtta
Alignments
lowQualScore : 11111
lowQualScore : 0 0 0 66666 6 1
lowQualScore : . . . ..... . .
lowQualScore : 2 2 5 77777 7 7
consensus : TATCATACCATGTGTCTGCGGCATGATACTCCAGTGTGGCAGCGCTTAGAATACTGTCTCAAGTAGACACCGTCG-----CGAT-ATGACTGAAAAATTGTTGAAAGCGACGCTAAACACCATACAACAA
Reference ( family-866 ) : TATCATACCATGTGTCTGCGGCATGATACTCCAGTGTGGCAGCGCTTAGAATACTGTCTCAAGTAGACACCGTCG-----CGAT-ATGACTGAAAAATTGTTGAAAGCGACGCTAAACACCATACAACAA
gi|54491 : TATCTTACTTGGTGTTTGTGGCA--GT-CTTTAGTCTGGCAGCATTT------CTGTTTCATGCAGACACTATTAGATTTTGATTATAATTGAGCAATT-TTGAAAGTTGTGCTAAATATCATATAAGAA
gi|54492 : TATCTTACTTGGTGTTTGTGGCA--GT-CTTTAGTCTGGCAGCATTT------CTGTTTCATGCAGACACTATTAGATTTTGATTATAATTGAGCAATT-TTGAAAGTTGTGCTAAATATCATATAAGAAtgctattggttgagcatgttaaggaaacataggaa
gi|54493 : TATCTTACTTGGTGTTTGTGGCA--GT-CTTTAGTCTGGCAGCATTT------CTGTTTCATGCAGACACTATTAGATTTTGATTATAATTGAGCAATT-TTGAAAGTTGTGCTAAATATCATATAAGAAtgctattggttgagcatgttaaggaaacataggaa
gi|54494 : TATCATAC-ATGTGTCTGTGGCATGATACTTTAGTTTGACAGCACTTAGAATACTGTCTCAAGTAGACACTGTCA-----CAAT-ATAACTGAACAATTGTTAAAAGTGATG-----CACCAAACAGCAtgctattggttgagcatgttaaggaaacataggaa
gi|54495 : TATCATACCATGTATCTGTGGCATGATATTTCAGTGTGACAGCATTTAGAATACTGTCTCAAGTAGACACTGTTG-----CAAT-ATATTTGAAAAATTGTTTAAAGTGGCACTAAACACCATACAA
gi|54496 : TATCATACCATGTGACTGTGGCATGATACTCCAGTGTGGCAGCACTTAGGATACTGTCTCAAGCAGACACTGTAG-----TG---ATGACTGAAAAATTGTTAAAAGCAGCGCTAAACACCATGCAACAA
gi|54497 : TATCATACCACGTGTCTGCGGCATGATACTCCAGTGCGGCAGCGCTCAGAATACTGTCTCATGTAGACACCGTCG-----CGAT-ATGACTGAACAATTGTTGAAAGCGACGCTAAACACCATACAACAA
gi|54498 : TATCATACTATGTGTCTGCGGCATGATACGCCAGTGTGACAGCGCTTAGAATACTGTTTCAAGTAGACACCGTCG-----GGAT-ATGACTGAAAAATTGTTGAAAGTGACGCTAAACATGATACAACAA
gi|54499 : TATCATACCATGTGTCTGTGGCATGATACTCCAGTGTGATAGCGTTTAGAATACTGTCTCAAGTAGACACTGTCA-----CAAT-ATGACTGAAAAATTGTTGAAAGCGCCGCTAAACACCATACAACA
gi|54500 : TATCATACCATGTGTCTGCGGCATGTTATTCCAGTATGACAGCGCTTAGAATACTGTCTCAAGTAGACACCGTCG-----CGAT-ATGACTGAAAAATTGTTGAAAGCGACGCTAAACACCATACAACAAttattatt
gi|54501 : TATCATACCACGTGTCTGCGGCATGATACTTCAGTGTGACAGCGCTTAGAATACTGTCTCAAGTAGACACCGTCG-----CGAT-ATGACTGAAAAATTGTTGAAAGCGATGCTAAACACCATACAAcattattg
gi|54502 : TATCATACCATGTGTCTGCAGCATGATACTCCAGTGTGACAGCGCTTAGAATACTGTCTCAAGTAGACACTGTTG-----CGAT-ATGACTGAAAAATTGTTGAAAGCGACGCTAAACACCATACAACAA
gi|54503 : TATCATACCATGTGTCTGCGGCATGATACTCCAGTGTGACAGCGCTTAGAATACTGTCTCAAGTAGACACCGTCG-----CGAT-ATGACTGAACAATTGTTGAAAGCGACGCTAAACACCATACAACAAcattatt
gi|54504 : TATCATACCATGTGTCTGCGGCATGATACTCCAGTGTGACAGCGCTTAGAATACTGTCTCAAGTAGACACCGTCG-----CGAT-ATGACTGAACAATTGTTGAAAGCAACGCTAAACACCATACAACAA
gi|54505 : GTGTCTGCGGCATTATACTCCAGTGTGACAGTGCTTAGAATACTGTCTCAAGTAGACACTGTCG-----CGAT-ATGACTGAAAAATTGTTGAAAGTGACGCTAAACACCATACAACAA
gi|54506 : GTGTCTGCAGCATGATATATCAGTGTGGTAGCACTCAGAATACTGTTTCAAGGAGACATCATTG-----TAAT-ATAACTGAAAATTTGTTGAAAGCAATGCTAAACATCATACAAAAA
gi|54507 : CTCTAGTGTGGCAGTGCTCAGAATACTGTTTCAAGTAGACACCATTG-----CGAT-ATGACTGAAAAATTGTTGAAAGCGGCGCTAAACACCATACAACAA
gi|54508 : CTTCAGTGTGGCAGCACTTCAAATACTGTCTCAAGTAGACACCATCA-----TGAT-ATGACCGAACAATTGTTGAAAACGAAGCTAAACACCATGCAACAAatgtta
Alignments
lowQualScore : 11111
lowQualScore : 0 0 0 66666 6 1
lowQualScore : . . . ..... . .
lowQualScore : 2 2 5 77777 7 7
consensus : TATCATACCATGTGTCTGCGGCATGATACTCCAGTGTGGCAGCGCTTAGAATACTGTCTCAAGTAGACACCGTCG-----CGAT-ATGACTGAAAAATTGTTGAAAGCGACGCTAAACACCATACAACAA
Reference ( family-866 ) : TATCATACCATGTGTCTGCGGCATGATACTCCAGTGTGGCAGCGCTTAGAATACTGTCTCAAGTAGACACCGTCG-----CGAT-ATGACTGAAAAATTGTTGAAAGCGACGCTAAACACCATACAACAA
gi|54491 : TATCTTACTTGGTGTTTGTGGCA--GT-CTTTAGTCTGGCAGCATTT------CTGTTTCATGCAGACACTATTAGATTTTGATTATAATTGAGCAATT-TTGAAAGTTGTGCTAAATATCATATAAGAA
gi|54492 : TATCTTACTTGGTGTTTGTGGCA--GT-CTTTAGTCTGGCAGCATTT------CTGTTTCATGCAGACACTATTAGATTTTGATTATAATTGAGCAATT-TTGAAAGTTGTGCTAAATATCATATAAGAAtgctattggttgagcatgttaaggaaacataggaa
gi|54493 : TATCTTACTTGGTGTTTGTGGCA--GT-CTTTAGTCTGGCAGCATTT------CTGTTTCATGCAGACACTATTAGATTTTGATTATAATTGAGCAATT-TTGAAAGTTGTGCTAAATATCATATAAGAAtgctattggttgagcatgttaaggaaacataggaa
gi|54494 : TATCATAC-ATGTGTCTGTGGCATGATACTTTAGTTTGACAGCACTTAGAATACTGTCTCAAGTAGACACTGTCA-----CAAT-ATAACTGAACAATTGTTAAAAGTGATG-----CACCAAACAGCAtgctattggttgagcatgttaaggaaacataggaa
gi|54495 : TATCATACCATGTATCTGTGGCATGATATTTCAGTGTGACAGCATTTAGAATACTGTCTCAAGTAGACACTGTTG-----CAAT-ATATTTGAAAAATTGTTTAAAGTGGCACTAAACACCATACAA
gi|54496 : TATCATACCATGTGACTGTGGCATGATACTCCAGTGTGGCAGCACTTAGGATACTGTCTCAAGCAGACACTGTAG-----TG---ATGACTGAAAAATTGTTAAAAGCAGCGCTAAACACCATGCAACAA
gi|54497 : TATCATACCACGTGTCTGCGGCATGATACTCCAGTGCGGCAGCGCTCAGAATACTGTCTCATGTAGACACCGTCG-----CGAT-ATGACTGAACAATTGTTGAAAGCGACGCTAAACACCATACAACAA
gi|54498 : TATCATACTATGTGTCTGCGGCATGATACGCCAGTGTGACAGCGCTTAGAATACTGTTTCAAGTAGACACCGTCG-----GGAT-ATGACTGAAAAATTGTTGAAAGTGACGCTAAACATGATACAACAA
gi|54499 : TATCATACCATGTGTCTGTGGCATGATACTCCAGTGTGATAGCGTTTAGAATACTGTCTCAAGTAGACACTGTCA-----CAAT-ATGACTGAAAAATTGTTGAAAGCGCCGCTAAACACCATACAACA
gi|54500 : TATCATACCATGTGTCTGCGGCATGTTATTCCAGTATGACAGCGCTTAGAATACTGTCTCAAGTAGACACCGTCG-----CGAT-ATGACTGAAAAATTGTTGAAAGCGACGCTAAACACCATACAACAAttattatt
gi|54501 : TATCATACCACGTGTCTGCGGCATGATACTTCAGTGTGACAGCGCTTAGAATACTGTCTCAAGTAGACACCGTCG-----CGAT-ATGACTGAAAAATTGTTGAAAGCGATGCTAAACACCATACAAcattattg
gi|54502 : TATCATACCATGTGTCTGCAGCATGATACTCCAGTGTGACAGCGCTTAGAATACTGTCTCAAGTAGACACTGTTG-----CGAT-ATGACTGAAAAATTGTTGAAAGCGACGCTAAACACCATACAACAA
gi|54503 : TATCATACCATGTGTCTGCGGCATGATACTCCAGTGTGACAGCGCTTAGAATACTGTCTCAAGTAGACACCGTCG-----CGAT-ATGACTGAACAATTGTTGAAAGCGACGCTAAACACCATACAACAAcattatt
gi|54504 : TATCATACCATGTGTCTGCGGCATGATACTCCAGTGTGACAGCGCTTAGAATACTGTCTCAAGTAGACACCGTCG-----CGAT-ATGACTGAACAATTGTTGAAAGCAACGCTAAACACCATACAACAA
gi|54505 : GTGTCTGCGGCATTATACTCCAGTGTGACAGTGCTTAGAATACTGTCTCAAGTAGACACTGTCG-----CGAT-ATGACTGAAAAATTGTTGAAAGTGACGCTAAACACCATACAACAA
gi|54506 : GTGTCTGCAGCATGATATATCAGTGTGGTAGCACTCAGAATACTGTTTCAAGGAGACATCATTG-----TAAT-ATAACTGAAAATTTGTTGAAAGCAATGCTAAACATCATACAAAAA
gi|54507 : CTCTAGTGTGGCAGTGCTCAGAATACTGTTTCAAGTAGACACCATTG-----CGAT-ATGACTGAAAAATTGTTGAAAGCGGCGCTAAACACCATACAACAA
gi|54508 : CTTCAGTGTGGCAGCACTTCAAATACTGTCTCAAGTAGACACCATCA-----TGAT-ATGACCGAACAATTGTTGAAAACGAAGCTAAACACCATGCAACAAatgtta
blockSeqs : GATTT T C
blockSeqs : GATTT T C
blockSeqs : . . C
blockSeqs : . . A
blockSeqs : . . A
blockSeqs : . . C
blockSeqs : . . A
blockSeqs : . . A
blockSeqs : . . A
blockSeqs : . . A
blockSeqs : . . A
blockSeqs : . . C
blockSeqs : . . C
blockSeqs : . . A
blockSeqs : . . A
blockSeqs : . . A
blockSeqs : . . C
blockSeqCons : *****
originalCons : TATCATACCATGTGTCTGCGGCATGATACTCCAGTGTGGCAGCGCTTAGAATACTGTCTCAAGTAGACACCGTCG-----CGAT-ATGACTGAAAAATTGTTGAAAGCGACGCTAAACACCATACAACAA
finalCons : TATCATACCATGTGTCTGCGGCATGATACTCCAGTGTGGCAGCGCTTAGAATACTGTCTCAAGTAGACACCGTCG-----CGAT-ATGACTGAAAAATTGTTGAAAGCGACGCTAAACACCATACAACAA
Alignments
lowQualScore : 11111
lowQualScore : 0 0 0 66666 6 1
lowQualScore : . . . ..... . .
lowQualScore : 2 2 5 77777 7 7
consensus : TATCATACCATGTGTCTGCGGCATGATACTCCAGTGTGGCAGCGCTTAGAATACTGTCTCAAGTAGACACCGTCG-----CGAT-ATGACTGAAAAATTGTTGAAAGCGACGCTAAACACCATACAACAA
Reference ( family-866 ) : TATCATACCATGTGTCTGCGGCATGATACTCCAGTGTGGCAGCGCTTAGAATACTGTCTCAAGTAGACACCGTCG-----CGAT-ATGACTGAAAAATTGTTGAAAGCGACGCTAAACACCATACAACAA
gi|54491 : TATCTTACTTGGTGTTTGTGGCA--GT-CTTTAGTCTGGCAGCATTT------CTGTTTCATGCAGACACTATTAGATTTTGATTATAATTGAGCAATT-TTGAAAGTTGTGCTAAATATCATATAAGAA
gi|54492 : TATCTTACTTGGTGTTTGTGGCA--GT-CTTTAGTCTGGCAGCATTT------CTGTTTCATGCAGACACTATTAGATTTTGATTATAATTGAGCAATT-TTGAAAGTTGTGCTAAATATCATATAAGAAtgctattggttgagcatgttaaggaaacataggaa
gi|54493 : TATCTTACTTGGTGTTTGTGGCA--GT-CTTTAGTCTGGCAGCATTT------CTGTTTCATGCAGACACTATTAGATTTTGATTATAATTGAGCAATT-TTGAAAGTTGTGCTAAATATCATATAAGAAtgctattggttgagcatgttaaggaaacataggaa
gi|54494 : TATCATAC-ATGTGTCTGTGGCATGATACTTTAGTTTGACAGCACTTAGAATACTGTCTCAAGTAGACACTGTCA-----CAAT-ATAACTGAACAATTGTTAAAAGTGATG-----CACCAAACAGCAtgctattggttgagcatgttaaggaaacataggaa
gi|54495 : TATCATACCATGTATCTGTGGCATGATATTTCAGTGTGACAGCATTTAGAATACTGTCTCAAGTAGACACTGTTG-----CAAT-ATATTTGAAAAATTGTTTAAAGTGGCACTAAACACCATACAA
gi|54496 : TATCATACCATGTGACTGTGGCATGATACTCCAGTGTGGCAGCACTTAGGATACTGTCTCAAGCAGACACTGTAG-----TG---ATGACTGAAAAATTGTTAAAAGCAGCGCTAAACACCATGCAACAA
gi|54497 : TATCATACCACGTGTCTGCGGCATGATACTCCAGTGCGGCAGCGCTCAGAATACTGTCTCATGTAGACACCGTCG-----CGAT-ATGACTGAACAATTGTTGAAAGCGACGCTAAACACCATACAACAA
gi|54498 : TATCATACTATGTGTCTGCGGCATGATACGCCAGTGTGACAGCGCTTAGAATACTGTTTCAAGTAGACACCGTCG-----GGAT-ATGACTGAAAAATTGTTGAAAGTGACGCTAAACATGATACAACAA
gi|54499 : TATCATACCATGTGTCTGTGGCATGATACTCCAGTGTGATAGCGTTTAGAATACTGTCTCAAGTAGACACTGTCA-----CAAT-ATGACTGAAAAATTGTTGAAAGCGCCGCTAAACACCATACAACA
gi|54500 : TATCATACCATGTGTCTGCGGCATGTTATTCCAGTATGACAGCGCTTAGAATACTGTCTCAAGTAGACACCGTCG-----CGAT-ATGACTGAAAAATTGTTGAAAGCGACGCTAAACACCATACAACAAttattatt
gi|54501 : TATCATACCACGTGTCTGCGGCATGATACTTCAGTGTGACAGCGCTTAGAATACTGTCTCAAGTAGACACCGTCG-----CGAT-ATGACTGAAAAATTGTTGAAAGCGATGCTAAACACCATACAAcattattg
gi|54502 : TATCATACCATGTGTCTGCAGCATGATACTCCAGTGTGACAGCGCTTAGAATACTGTCTCAAGTAGACACTGTTG-----CGAT-ATGACTGAAAAATTGTTGAAAGCGACGCTAAACACCATACAACAA
gi|54503 : TATCATACCATGTGTCTGCGGCATGATACTCCAGTGTGACAGCGCTTAGAATACTGTCTCAAGTAGACACCGTCG-----CGAT-ATGACTGAACAATTGTTGAAAGCGACGCTAAACACCATACAACAAcattatt
gi|54504 : TATCATACCATGTGTCTGCGGCATGATACTCCAGTGTGACAGCGCTTAGAATACTGTCTCAAGTAGACACCGTCG-----CGAT-ATGACTGAACAATTGTTGAAAGCAACGCTAAACACCATACAACAA
gi|54505 : GTGTCTGCGGCATTATACTCCAGTGTGACAGTGCTTAGAATACTGTCTCAAGTAGACACTGTCG-----CGAT-ATGACTGAAAAATTGTTGAAAGTGACGCTAAACACCATACAACAA
gi|54506 : GTGTCTGCAGCATGATATATCAGTGTGGTAGCACTCAGAATACTGTTTCAAGGAGACATCATTG-----TAAT-ATAACTGAAAATTTGTTGAAAGCAATGCTAAACATCATACAAAAA
gi|54507 : CTCTAGTGTGGCAGTGCTCAGAATACTGTTTCAAGTAGACACCATTG-----CGAT-ATGACTGAAAAATTGTTGAAAGCGGCGCTAAACACCATACAACAA
gi|54508 : CTTCAGTGTGGCAGCACTTCAAATACTGTCTCAAGTAGACACCATCA-----TGAT-ATGACCGAACAATTGTTGAAAACGAAGCTAAACACCATGCAACAAatgtta