lowQualScore : 1111111
lowQualScore : 88 33 33 2 0000000 0 1 0 4 0 33 0
lowQualScore : .. .. .. . ....... . . . . . .. .
lowQualScore : 99 77 22 4 4444444 9 1 2 0 8 44 7
consensus : ACAACA-NA--AACAATATCTCT--CGTTTCTT-GGAATN----CGATTTCTTGCATAACGACCNGTTTGAATTCT--AAGAGTAT
Reference ( gi|19792 ) : ACAACA-AA--GACAATATCTCT--CATTTCTT-GGAATG----TGATTTCTTGCATAACGACCTGTTTGAATTCT--AAGAGTAT
gi|19793 : ACAACA-AA--GACAATATCTCT--CATTTCTT-GGAATG----TGATTTCTTGCATAACGACCTGTTTGAATTCT--AAGAGTAT
gi|19791 : ACAACA-AA--GACAATATCTCT--CATTTCTT-GGAATG----TGATTTCTTGCATAACGACCTGTTTGAATTCT--AAGAGTAT
gi|19794 : ACAACA-AA--GACAATATCTCT--CATTTTTT-GGAATG----TTAGTTCTTGCATAACGACCTGTTTGAATTCT--AAGAGTAT
gi|19795 : ACAACA-AA--GAAAATATCTCT--CATTTCTC-GGAATG----CGATTTCTTGCATAGCGACCTGTTTGAACTCT--AAGAGCAT
gi|19796 : ACAACA-CA--GACAATATCTCT--CGTTTCTT-TGAACA----TGGTTTCTTGCATAACGACCTGTTTGAATTCT--GAGAGTAT
gi|19797 : ACAACA-AA--GTCAATATCTCT--CATTTCTT-GGAATG----TAATTTCTTGCATAACGACCTGTTTGAATACT--GA
gi|19798 : ACAACATAATTAACAATATTTCT--AGTTTTTT-GGAACGAACATGGTTTCTTGTATAACGACCTGTTTGAATGCT--GAGAGCAT
gi|19799 : ATAGCA-CA--AATAATATCTGT--CGTTTCTT-GGAATA----TGATTTATTATATAACGACCAGTTTGAATTCT--
gi|19800 : ACAACA-CA--AACAATGTGTCT--CGTTTCAT-AGGACC----TGATCTCCTGTACAACGACCAGGTTGAAATGT--GTGAGTAT
gi|19803 : CAACA-TA--AACAATATCTTT--CATTTTTT-GGAATT----CTATTTCTGTCATATCGTCCAGTTTGTATTCT--AAGAGGAT
gi|19802 : CAACA-TA--AACAATATCTTT--CATTTTTT-GGAATT----CTATTTCTGTCATATCGTCCAGTTTGTATTCT--AAGAGGAT
gi|19801 : CAACA-TA--AACAATATCTTT--CATTTTTT-GGAATT----CTATTTCTGTCATATCGTCCAGTTTGTATTCT--AAGAGGAT
gi|19804 : CAACA-TA--AACAATATCTTT--CATTTTTTTGGAATT----CTATTTCTGTCATATCGTCCAGTTTGTATTCT--AAGAGTAT
gi|19805 : CAACA-TA--AACAATATATTT--CATTTTTT-GGAATT----CTATTTCTGTCATATCGTCCAGTTTGTATTCT--AAGA
gi|19806 : AACA-TA--AACAATATCTTT--CATTTTTT-TGAATT----CTATTTCTGTTATATCGTCCATTTTGTATTCT--AAGAGGAT
gi|19807 : ATACTTCT--CGTTCCTT-GGAATA----TGATTTCTTGAATAACGACC
gi|19808 : CTCTGGCATTTCTA-AGAATC----CTATTTCTGGCATAATGACCTGTTTGAATTCTTAAAGAATGT
Alignments
lowQualScore : 1 444 33 1 2 6666666 0 0 1 0 33
lowQualScore : . ... .. . . ....... . . . . ..
lowQualScore : 0 444 11 6 2 6666666 3 5 0 2 22
consensus : ACAACANAG---ACAATATCTCT--CATTTCTT-GGAATN----CGATTTCTTGCATAACGACCNGTTTGAATTCT--AAGAGTAT
Reference ( family-865 ) : ACAACANAA---ACAATATCTCT--CGTTTCTT-GGAATN----CGATTTCTTGCATAACGACCNGTTTGAATTCT--AAGAGTAT
gi|19791 : ACAACAAAG---ACAATATCTCT--CATTTCTT-GGAATG----TGATTTCTTGCATAACGACCTGTTTGAATTCT--AAGAGTAT
gi|19792 : ACAACAAAG---ACAATATCTCT--CATTTCTT-GGAATG----TGATTTCTTGCATAACGACCTGTTTGAATTCT--AAGAGTAT
gi|19793 : ACAACAAAG---ACAATATCTCT--CATTTCTT-GGAATG----TGATTTCTTGCATAACGACCTGTTTGAATTCT--AAGAGTAT
gi|19794 : ACAACAAAG---ACAATATCTCT--CATTTTTT-GGAATG----TTAGTTCTTGCATAACGACCTGTTTGAATTCT--AAGAGTAT
gi|19795 : ACAACAAAG---AAAATATCTCT--CATTTCTC-GGAATG----CGATTTCTTGCATAGCGACCTGTTTGAACTCT--AAGAGCAT
gi|19796 : ACAACACAG---ACAATATCTCT--CGTTTCTT-TGAACA----TGGTTTCTTGCATAACGACCTGTTTGAATTCT--GAGAGTAT
gi|19797 : ACAACAAAG---TCAATATCTCT--CATTTCTT-GGAATG----TAATTTCTTGCATAACGACCTGTTTGAATACT--GA
gi|19798 : ACAACATAATTAACAATATTTCT--AGTTTTTT-GGAACGAACATGGTTTCTTGTATAACGACCTGTTTGAATGCT--GAGAGCAT
gi|19799 : ATAGCACAA---ATAATATCTGT--CGTTTCTT-GGAATA----TGATTTATTATATAACGACCAGTTTGAATTCT--
gi|19800 : ACAACACAA---ACAATGTGTCT--CGTTTCAT-AGGACC----TGATCTCCTGTACAACGACCAGGTTGAAATGT--GTGAGTAT
gi|19801 : CAACATAA---ACAATATCTTT--CATTTTTT-GGAATT----CTATTTCTGTCATATCGTCCAGTTTGTATTCT--AAGAGGAT
gi|19802 : CAACATAA---ACAATATCTTT--CATTTTTT-GGAATT----CTATTTCTGTCATATCGTCCAGTTTGTATTCT--AAGAGGAT
gi|19803 : CAACATAA---ACAATATCTTT--CATTTTTT-GGAATT----CTATTTCTGTCATATCGTCCAGTTTGTATTCT--AAGAGGAT
gi|19804 : CAACATAA---ACAATATCTTT--CATTTTTTTGGAATT----CTATTTCTGTCATATCGTCCAGTTTGTATTCT--AAGAGTAT
gi|19805 : CAACATAA---ACAATATATTT--CATTTTTT-GGAATT----CTATTTCTGTCATATCGTCCAGTTTGTATTCT--AAGA
gi|19806 : AACATAA---ACAATATCTTT--CATTTTTT-TGAATT----CTATTTCTGTTATATCGTCCATTTTGTATTCT--AAGAGGAT
gi|19807 : ATACTTCT--CGTTCCTT-GGAATA----TGATTTCTTGAATAACGACC
gi|19808 : CTCTGGCATTTCTA-AGAATC----CTATTTCTGGCATAATGACCTGTTTGAATTCTTAAAGAATGT
Alignments
lowQualScore : 1 444 33 2 6666666 0 0 1 0 33
lowQualScore : . ... .. . ....... . . . . ..
lowQualScore : 0 444 11 2 6666666 3 5 0 2 22
consensus : ACAACANAG---ACAATATCTCT--CATTTCTT-GGAATN----CGATTTCTTGCATAACGACCNGTTTGAATTCT--AAGAGTAT
Reference ( family-865 ) : ACAACANAG---ACAATATCTCT--CATTTCTT-GGAATN----CGATTTCTTGCATAACGACCNGTTTGAATTCT--AAGAGTAT
gi|19791 : ACAACAAAG---ACAATATCTCT--CATTTCTT-GGAATG----TGATTTCTTGCATAACGACCTGTTTGAATTCT--AAGAGTAT
gi|19792 : ACAACAAAG---ACAATATCTCT--CATTTCTT-GGAATG----TGATTTCTTGCATAACGACCTGTTTGAATTCT--AAGAGTAT
gi|19793 : ACAACAAAG---ACAATATCTCT--CATTTCTT-GGAATG----TGATTTCTTGCATAACGACCTGTTTGAATTCT--AAGAGTAT
gi|19794 : ACAACAAAG---ACAATATCTCT--CATTTTTT-GGAATG----TTAGTTCTTGCATAACGACCTGTTTGAATTCT--AAGAGTAT
gi|19795 : ACAACAAAG---AAAATATCTCT--CATTTCTC-GGAATG----CGATTTCTTGCATAGCGACCTGTTTGAACTCT--AAGAGCAT
gi|19796 : ACAACACAG---ACAATATCTCT--CGTTTCTT-TGAACA----TGGTTTCTTGCATAACGACCTGTTTGAATTCT--GAGAGTAT
gi|19797 : ACAACAAAG---TCAATATCTCT--CATTTCTT-GGAATG----TAATTTCTTGCATAACGACCTGTTTGAATACT--GA
gi|19798 : ACAACATAATTAACAATATTTCT--AGTTTTTT-GGAACGAACATGGTTTCTTGTATAACGACCTGTTTGAATGCT--GAGAGCAT
gi|19799 : ATAGCACAA---ATAATATCTGT--CGTTTCTT-GGAATA----TGATTTATTATATAACGACCAGTTTGAATTCT--
gi|19800 : ACAACACAA---ACAATGTGTCT--CGTTTCAT-AGGACC----TGATCTCCTGTACAACGACCAGGTTGAAATGT--GTGAGTAT
gi|19801 : CAACATAA---ACAATATCTTT--CATTTTTT-GGAATT----CTATTTCTGTCATATCGTCCAGTTTGTATTCT--AAGAGGAT
gi|19802 : CAACATAA---ACAATATCTTT--CATTTTTT-GGAATT----CTATTTCTGTCATATCGTCCAGTTTGTATTCT--AAGAGGAT
gi|19803 : CAACATAA---ACAATATCTTT--CATTTTTT-GGAATT----CTATTTCTGTCATATCGTCCAGTTTGTATTCT--AAGAGGAT
gi|19804 : CAACATAA---ACAATATCTTT--CATTTTTTTGGAATT----CTATTTCTGTCATATCGTCCAGTTTGTATTCT--AAGAGTAT
gi|19805 : CAACATAA---ACAATATATTT--CATTTTTT-GGAATT----CTATTTCTGTCATATCGTCCAGTTTGTATTCT--AAGA
gi|19806 : AACATAA---ACAATATCTTT--CATTTTTT-TGAATT----CTATTTCTGTTATATCGTCCATTTTGTATTCT--AAGAGGAT
gi|19807 : ATACTTCT--CGTTCCTT-GGAATA----TGATTTCTTGAATAACGACC
gi|19808 : CTCTGGCATTTCTA-AGAATC----CTATTTCTGGCATAATGACCTGTTTGAATTCTTAAAGAATGT
blockSeqs : A TTA GG T GAACATG T TA
blockSeqs : A . . . GTG T .
blockSeqs : A . . . GTG T .
blockSeqs : A . . . GTT T .
blockSeqs : C . . . GCG T .
blockSeqs : A . . . ATG T .
blockSeqs : T . . . GTA T .
blockSeqs : C . . . ATG A .
blockSeqs : C . . . CTG A .
blockSeqs : T . . . TCT A .
blockSeqs : T . . . TCT A .
blockSeqs : T . . . TCT A .
blockSeqs : T . . . TCT A .
blockSeqs : T . . . TCT A .
blockSeqs : T . . . TCT A .
blockSeqs : . . ATG T .
blockSeqs : . . CCT
blockSeqCons :
originalCons : ACAACANAG---ACAATATCTCT--CATTTCTT-GGAATN----CGATTTCTTGCATAACGACCNGTTTGAATTCT--AAGAGTAT
finalCons : ACAACANAG---ACAATATCTCT--CATTTCTT-GGAATN----CGATTTCTTGCATAACGACCNGTTTGAATTCT--AAGAGTAT
Alignments
lowQualScore : 1 444 33 2 6666666 0 0 1 0 33
lowQualScore : . ... .. . ....... . . . . ..
lowQualScore : 0 444 11 2 6666666 3 5 0 2 22
consensus : ACAACANAG---ACAATATCTCT--CATTTCTT-GGAATN----CGATTTCTTGCATAACGACCNGTTTGAATTCT--AAGAGTAT
Reference ( family-865 ) : ACAACANAG---ACAATATCTCT--CATTTCTT-GGAATN----CGATTTCTTGCATAACGACCNGTTTGAATTCT--AAGAGTAT
gi|19791 : ACAACAAAG---ACAATATCTCT--CATTTCTT-GGAATG----TGATTTCTTGCATAACGACCTGTTTGAATTCT--AAGAGTAT
gi|19792 : ACAACAAAG---ACAATATCTCT--CATTTCTT-GGAATG----TGATTTCTTGCATAACGACCTGTTTGAATTCT--AAGAGTAT
gi|19793 : ACAACAAAG---ACAATATCTCT--CATTTCTT-GGAATG----TGATTTCTTGCATAACGACCTGTTTGAATTCT--AAGAGTAT
gi|19794 : ACAACAAAG---ACAATATCTCT--CATTTTTT-GGAATG----TTAGTTCTTGCATAACGACCTGTTTGAATTCT--AAGAGTAT
gi|19795 : ACAACAAAG---AAAATATCTCT--CATTTCTC-GGAATG----CGATTTCTTGCATAGCGACCTGTTTGAACTCT--AAGAGCAT
gi|19796 : ACAACACAG---ACAATATCTCT--CGTTTCTT-TGAACA----TGGTTTCTTGCATAACGACCTGTTTGAATTCT--GAGAGTAT
gi|19797 : ACAACAAAG---TCAATATCTCT--CATTTCTT-GGAATG----TAATTTCTTGCATAACGACCTGTTTGAATACT--GA
gi|19798 : ACAACATAATTAACAATATTTCT--AGTTTTTT-GGAACGAACATGGTTTCTTGTATAACGACCTGTTTGAATGCT--GAGAGCAT
gi|19799 : ATAGCACAA---ATAATATCTGT--CGTTTCTT-GGAATA----TGATTTATTATATAACGACCAGTTTGAATTCT--
gi|19800 : ACAACACAA---ACAATGTGTCT--CGTTTCAT-AGGACC----TGATCTCCTGTACAACGACCAGGTTGAAATGT--GTGAGTAT
gi|19801 : CAACATAA---ACAATATCTTT--CATTTTTT-GGAATT----CTATTTCTGTCATATCGTCCAGTTTGTATTCT--AAGAGGAT
gi|19802 : CAACATAA---ACAATATCTTT--CATTTTTT-GGAATT----CTATTTCTGTCATATCGTCCAGTTTGTATTCT--AAGAGGAT
gi|19803 : CAACATAA---ACAATATCTTT--CATTTTTT-GGAATT----CTATTTCTGTCATATCGTCCAGTTTGTATTCT--AAGAGGAT
gi|19804 : CAACATAA---ACAATATCTTT--CATTTTTTTGGAATT----CTATTTCTGTCATATCGTCCAGTTTGTATTCT--AAGAGTAT
gi|19805 : CAACATAA---ACAATATATTT--CATTTTTT-GGAATT----CTATTTCTGTCATATCGTCCAGTTTGTATTCT--AAGA
gi|19806 : AACATAA---ACAATATCTTT--CATTTTTT-TGAATT----CTATTTCTGTTATATCGTCCATTTTGTATTCT--AAGAGGAT
gi|19807 : ATACTTCT--CGTTCCTT-GGAATA----TGATTTCTTGAATAACGACC
gi|19808 : CTCTGGCATTTCTA-AGAATC----CTATTTCTGGCATAATGACCTGTTTGAATTCTTAAAGAATGT