lowQualScore : 222222 1 111111111111 1
lowQualScore : 6 444 33 555 33 22 0 5555 444 888 2 33 2 111111 33 999 444 1 2 77777 8 33 0 33 333333333333 777777 2 2 6 2
lowQualScore : . ... .. ... .. .. . .... ... ... . .. . ...... .. ... ... . . ..... . .. . .. ............ ...... . . . .
lowQualScore : 0 111 22 999 22 88 3 0000 111 222 4 11 4 777777 44 444 777 1 7 55555 6 77 3 77 777777777777 777777 7 1 0 7
consensus : GTCCGTCCGTCCGT---CTGT--TCTGTTC--CG--TAGTGCTTCCAA----TA---TGC---TTCCATATCGAA-TTTAC--ACAC-A-A-C--T--TTTATCTAAATGATATCAA--AATA---TAGAAGAAAAAA-TG----CTGG--TGGATTTTT--GT------------GTAA------TATTGC-AGTTTATATTATGTCAAGATCATTGATACTAC
Reference ( gi|8941 ) : GTTCGTCCGTCCGT---CTGT--TCTGTTC--CG--TAGTGCTTCCAA----TA---TGC---TTCCATATCGAA-TTTAC--ACAC-A-A-C--T--TTTATCTAAATGATATCAG--AATA---TAGAAGAAAACA-TG----CTTG--TGGATTTTT--GT------------GTAA------TATTGC-AGTTTATATTACATCAAGAGCATTGATACTAC
gi|8935 : GTCCGTCCGTCCGT---CTGT--TATGTTG--CG--CAGTGCATCAAA----TA---TGC---TTCCATATCGAA-TTCAC--ACAC-ACA-A--T--TTTATTTCAATGATATCAA--AATA---AAGAAGACAA-A-TG----TTGG--TGGATTATT--GT------------GTAA------TATTTC-ATTTTAAATTATGTCAATATCATTGATACTAC
gi|8934 : cGTCCGTTCGTCCGT---CTGC--TCTATTT--CG--TA-------C-----------TGC---TTCCATATCGAA-TTTAC--ACAC-A-AAC--T--TTTATCTAAATGATATCAA--AATA---TAGAAGAAAAAT-TG----CTGG--TGGATTTTG--TT------------TTAT------TATTGC-AGTTTATATTTTATCAAGATCATTGATATTAC
gi|8936 : cGTCCGTCCGTCCGT---CTGT--CCTGATC--CG--TAAT----------------------------TATCGAA-CTTAC--ACAA-A-AAC--T--TTTATCTAAATGATATCAA--AATA---TAGAAGAAAACAATA----CTGG--TGTACTTTT--GT------------GTAA------TACTGC-AGTTTATATTATATCGAGATCATTGATGCTAC
gi|8938 : cGTCCATTCGTCCGT---CTGT--TCTGTT-----------GCTTCCAA----TA---TTC---TTCGGTATCGAA-TTTGT--A-AC-A---T--T--TTTATCTAAATGATATCAA--AATA------AAGAAAAAA-TG----TTTG--TGGATTTTTTAG-------------GTAA------TATTACAAATTTACATTATGCCAAGACCATTGCTACTA
gi|8939 : cGTCCGCCCGTCCGT---CTGT--TCCGTTC--GG--TAGTGTTTCAAATAAGTA---TGC---TTCTACATCGAA-TTTG---ATA--A-A-C--T--TTTATCTCAATGATAGCAA--AATA---TTAAAGACAAT--TT----TTTGTTTTGATTTTT--GT------------GTAATACATGTATTGC-AGTTCA
gi|8943 : cGTCCGTCCGTCCGT---CTGT--TCTGTTC--CT--TAGTGCTTTCAA----TA---TGC---TTCCATATCGAAGTGTAC---C-------C--T--TTTATCTAAATGATATCAA--A
gi|8937 : GTCCGTCAGTCCGT---CTAA--TCTGTTC--CG--TAGTGCTTCCAA----TA---TGC---TTCCATATCGAA-TTGAC--ACAC-A-
gi|8940 : cGTCCGTCCGTCCGT---CTGT--TCTGGTC--CG--TAGTGTATCAAA----TA---T-------------------TTAC--GCAT-G-A----------A-CTAAATGATAACAA--AATA---TTAAAGAAAAAA-TG----CTGT--TGGA-TCTT--AA------------GTAA------TATTGC-AGTTcacacacacacacacacacacacacacacacacacacacactattatctaaattatatcaaaataaagaagaaaaatgctgatggatttttatgtaatattgcagttgataatatataaagattattgatactac
gi|8945 : cGTCTGTCTATCTGT---CTGT---CTGTCG--CG--TAGTG----------------TG-----TCCATATCGAA-TTTAC--ACA
gi|8946 : CGTCCGTCCGT---GTGT--TCTGTTC--TG--T---------------TA---TGC---TTCTATATCAAA-TTTAC--ACAC-A-A-A--TGTTTTATCTAAATGATGTCTA--GATA---TAGAAGAAAACA-TG----TCGG--TGGATTTT---GT------------GTAA------TAGTGC-AGTTTATATTATATCAAGATCATTGATACTACtcttgaaatgttggtggtttttttataaaactaaagtttatagtatgtcaacatttttactac
gi|8947 : CGTCCGTCCGTATTTTTT--TCTGTTC--CG--TAGTGCTTCCAG----TA---TGC---TTCCATATCGAA-TTTAC--ACAC-GCA-C--T--TTTATTAAAATGATATCAA--TATA---TTGAAGAAAAAA-TG----CTGG--TGGAATTTT--AT------------GTTA------TATTGC-AGTT
gi|8942 : GTCCATCCGT---CTGTGTTCTGTTG--CG--TAGTGCTTCAAA----TA---TGC---TTCCAAATCGAA-TTTAC--ACACAA-A-A--T--TGTATCTAAATAATATTAA--AATAAAGTAGAAAAAA--A-TG----TTGG--TGGATTTTT--GT------------GTTA------TATTAC-ATTTGATATTATGTCAAGATCATTGATTCTA
gi|8948 : gtcaGTTCGTCCAT---CTGT--TCTGTTA--TG--TAATGCCTCCAA----TAAACCGG---TGACTTATCGAG-TCTAC--ACAC-A-A-------TTTATCTAAATAATATTAA--AATA---TAGAAGAAAACA-TG-----TTG---GCTTTTTT--TT------------TTAA------TATTGT-ATTTTATATCATGTCAAGA
gi|8944 : GTCCGTCCTT---CTGT--CC-GTCCATTGACTAGTGCTTTCTA----TA---GGCCGGTGACATATCGAG-TTAAC--ACAC-A-A-CATT--TTCATCTAAATGATATCAATCGATA---TAAAACAAAAAA-TA----TTGG--TAGATTATT--ATTATACATATTAGATAA------TATTAG-ATTTTATATTATGTTAAGAGCATTGCTAGTAtcctt
gi|8949 : GTCCGTCATT---CTGT--TCTGTTG--CG--AAGTA-TTCCAA----TA---GGCCGGTGACATATCGAA-TTTA---------------------ATCGAAATTGTATCAA--AGTA---TAGAAGAAAAAA-TGTTTTTTTG--TTGTTTTTT--TT------------TCAA------TATAAT-AATTTATATTATGTCAAGACCACTGTTGCTAC
gi|8950 : CGTCCGT---CCGT---CTGTTC--CG--TAGTGCTTCCAA----TA---TGC---TTCCATATCGAA-TTTAC--ATAC-A-AAC--T--TTTATCTTAATGATATCAA--AATA---TAAAAGAAAACA-TG----CTGA--TGGATTTTT--GT------------GTAA------TGTTAC-ATTTTATATTATATCAAGATCATTGATGCTAC
gi|8951 : GTTTGT---CTGT--TATGTTG--CG--CAGTGCTTCCAA----TA---TGC---TTTCATATCGAA-TGTGCATACAC-A-A----T--TTTATCTACATTATATCAA--AATA---AAGTAGAAAAAA-TG----TTGG--TGGA-TTTT--GT------------GTAA------TATTAC-ATTTTATATTATGTCAAAATAATTGAT
gi|8937 : AC--ACAC-ACA-C--T--ATTATCTAAATTATATCAA--AATA---AAGAAGAAAA-A-TG----CTGA--TGGATTTTT--AT------------GTAA------TATTGC-AGTTGATAATATATAAAGATTATTGATACTAC
Alignments
lowQualScore : 222222 111111111111
lowQualScore : 333 33 3 11 4444 333 777 2 22 222222 33 33 2222 5555 2 2 444 222222222222 666666 2 0
lowQualScore : ... .. . .. .... ... ... . .. ...... .. .. .... .... . . ... ............ ...... . .
lowQualScore : 999 11 4 66 7777 999 888 2 99 111111 11 11 6666 0000 4 4 444 111111111111 888888 4 7
consensus : GTCCGTCCGTCCGT---CTGT--TCTGTTCCGTAGTGCTTCCAA----TA---TGC---TTCCATATCGAA-TTTAC--ACACA-A-C--T--TTTATCTAAATGATATCAA--AATATAGAAGAAAA-AA-TG----CTG-G-TGGATTTTT--GT------------GTAA------TATTGC-AGTTTATATTATGTCAAGATCATTGATACTAC
Reference ( family-864 ) : GTCCGTCCGTCCGT---CTGT--TCTGTTCCGTAGTGCTTCCAA----TA---TGC---TTCCATATCGAA-TTTAC--ACACA-A-C--T--TTTATCTAAATGATATCAA--AATATAGAAGAAAA-AA-TG----CTG-G-TGGATTTTT--GT------------GTAA------TATTGC-AGTTTATATTATGTCAAGATCATTGATACTAC
gi|8934 : GTCCGTTCGTCCGT---CTGC--TCTATTTCGTA-------C-----------TGC---TTCCATATCGAA-TTTAC--ACACA-AAC--T--TTTATCTAAATGATATCAA--AATATAGAAGAAAA-AT-TG----CTG-G-TGGATTTTG--TT------------TTAT------TATTGC-AGTTTATATTTTATCAAGATCATTGATATTAC
gi|8935 : cGTCCGTCCGTCCGT---CTGT--TATGTTGCGCAGTGCATCAAA----TA---TGC---TTCCATATCGAA-TTCAC--ACACACA-A--T--TTTATTTCAATGATATCAA--AATAAAGAAG-ACA-AA-TG----TTG-G-TGGATTATT--GT------------GTAA------TATTTC-ATTTTAAATTATGTCAATATCATTGATACTAC
gi|8936 : cGTCCGTCCGTCCGT---CTGT--CCTGATCCGTAAT----------------------------TATCGAA-CTTAC--ACAAA-AAC--T--TTTATCTAAATGATATCAA--AATATAGAAGAAAACAA-TA----CTG-G-TGTACTTTT--GT------------GTAA------TACTGC-AGTTTATATTATATCGAGATCATTGATGCTAC
gi|8937 : cGTCCGTCAGTCCGT---CTAA--TCTGTTCCGTAGTGCTTCCAA----TA---TGC---TTCCATATCGAA-TTGAC--ACACA-
gi|8937 : cAC--ACACACA-C--T--ATTATCTAAATTATATCAA--AATAAAGAAGAAAA-A--TG----CTG-A-TGGATTTTT--AT------------GTAA------TATTGC-AGTTGATAATATATAAAGATTATTGATACTACcacacacacacacacacacacacacacacacacacacacactattatctaaattatatcaaaataaagaagaaaaatgctgatggatttttatgtaatattgcagttgataatatataaagattattgatactac
gi|8938 : cgtccgtcagtccgtctaatctgttccgtagtgcttccaatatgcttccatatcgaattgacacacacacacacacacacacacacacacacacacacGTCCATTCGTCCGT---CTGT--TCTGTT-------GCTTCCAA----TA---TTC---TTCGGTATCGAA-TTTGT--A-ACA---T--T--TTTATCTAAATGATATCAA--AATA---AAGAAAA-AA-TG----TTT-G-TGGATTTTTTAG-------------GTAA------TATTACAAATTTACATTATGCCAAGACCATTGCTACTA
gi|8939 : cGTCCGCCCGTCCGT---CTGT--TCCGTTCGGTAGTGTTTCAAATAAGTA---TGC---TTCTACATCGAA-TTTG---ATA-A-A-C--T--TTTATCTCAATGATAGCAA--AATATTAAAGACAA-TT-TT----TTGTT-TTGATTTTT--GT------------GTAATACATGTATTGC-AGTTCA
gi|8940 : cGTCCGTCCGTCCGT---CTGT--TCTGGTCCGTAGTGTATCAAA----TA---T-------------------TTAC--GCATG-A----------A-CTAAATGATAACAA--AATATTAAAGAAAA-AA-TG----CTG-T-TGGA-TCTT--AA------------GTAA------TATTGC-AGTT
gi|8941 : cGTTCGTCCGTCCGT---CTGT--TCTGTTCCGTAGTGCTTCCAA----TA---TGC---TTCCATATCGAA-TTTAC--ACACA-A-C--T--TTTATCTAAATGATATCAG--AATATAGAAGAAAA-CA-TG----CTT-G-TGGATTTTT--GT------------GTAA------TATTGC-AGTTTATATTACATCAAGAGCATTGATACTAC
gi|8942 : GTCAGTCCATCCGT---CTGTGTTCTGTTGCGTAGTGCTTCAAA----TA---TGC---TTCCAAATCGAA-TTTAC--ACACA-A-AA-T--TGTATCTAAATAATATTAA--AATAAAGTAGAAAA-AAATG----TTG-G-TGGATTTTT--GT------------GTTA------TATTAC-ATTTGATATTATGTCAAGATCATTGATTCTA
gi|8943 : GTCCGTCCGTCCGT---CTGT--TCTGTTCCTTAGTGCTTTCAA----TA---TGC---TTCCATATCGAAGTGTAC---C------C--T--TTTATCTAAATGATATCAA--A
gi|8944 : GTCCGTCCTTCTGT---CCGT--CC-ATTGACTAGTGCTTTCTA----TA---GGCCGGTGACATATCGAG-TTAAC--ACACA-A-CATT--TTCATCTAAATGATATCAATCGATATAAAACAAAA-AA-TA----TTG-G-TAGATTATT--ATTATACATATTAGATAA------TATTAG-ATTTTATATTATGTTAAGAGCATTGCTAGTA
gi|8945 : GTCTGTCTATCTGT---CTGT---CTGTCGCGTAGTG----------------TG-----TCCATATCGAA-TTTAC--AC---------------ATCT---TG------A--AATGT-------------TG----GTG-G-T---TTTTT---T------------ATAA------AACTAA-AGTTTATAGTATGTCAA---CATTTTTACTAC
gi|8946 : CGTCCGTCCGT---GTGT--TCTGTTCTGT---------------TA---TGC---TTCTATATCAAA-TTTAC--ACACA-A-A--TGTTTTATCTAAATGATGTCTA--GATATAGAAGAAAA-CA-TG----TCG-G-TGGATTTT---GT------------GTAA------TAGTGC-AGTTTATATTATATCAAGATCATTGATACTAC
gi|8947 : CGTCCGTCCGTATTTTTT--TCTGTTCCGTAGTGCTTCCAG----TA---TGC---TTCCATATCGAA-TTTAC--ACACGCA-C--T--TTTATTAAAATGATATCAA--TATATTGAAGAAAA-AA-TG----CTG-G-TGGAATTTT--AT------------GTTA------TATTGC-AGTT
gi|8948 : GTTCGTCCAT---CTGT--TCTGTTATGTAATGCCTCCAA----TAAACCGG---TGACTTATCGAG-TCTAC--ACACA-A-------TTTATCTAAATAATATTAA--AATATAGAAGAAAA-CA-TG----TTG-GCT---TTTTT--TT------------TTAA------TATTGT-ATTTTATATCATGTCAAGATCCTT
gi|8949 : GTCCGTCATT---CTGT--TCTGTTGCGAAGTA-TTCCAA----TA---GGCCGGTGACATATCGAA-TTTA--------------------ATCGAAATTGTATCAA--AGTATAGAAGAAAA-AA-TGTTTTTTT-G-TTGTTTTTT--TT------------TCAA------TATAAT-AATTTATATTATGTCAAGACCACTGTTGCTAC
gi|8950 : CGTCCGT---CCGT---CTGTTCCGTAGTGCTTCCAA----TA---TGC---TTCCATATCGAA-TTTAC--ATACA-AAC--T--TTTATCTTAATGATATCAA--AATATAAAAGAAAA-CA-TG----CTG-A-TGGATTTTT--GT------------GTAA------TGTTAC-ATTTTATATTATATCAAGATCATTGATGCTAC
gi|8951 : GTTTGT---CTGT--TATGTTGCGCAGTGCTTCCAA----TA---TGC---TTTCATATCGAA-TGTGCATACACA-A----T--TTTATCTACATTATATCAA--AATAAAGTAGAAAA-AA-TG----TTG-G-TGGA-TTTT--GT------------GTAA------TATTAC-ATTTTATATTATGTCAAAATAATTGAT
Alignments
lowQualScore : 222222 111111111111
lowQualScore : 333 33 3 11 4444 333 777 2 22 222222 33 33 2222 5555 2 2 444 222222222222 666666 2 0
lowQualScore : ... .. . .. .... ... ... . .. ...... .. .. .... .... . . ... ............ ...... . .
lowQualScore : 999 11 4 66 7777 999 888 2 99 111111 11 11 6666 0000 4 4 444 111111111111 888888 4 7
consensus : GTCCGTCCGTCCGT---CTGT--TCTGTTCCGTAGTGCTTCCAA----TA---TGC---TTCCATATCGAA-TTTAC--ACACA-A-C--T--TTTATCTAAATGATATCAA--AATATAGAAGAAAA-AA-TG----CTG-G-TGGATTTTT--GT------------GTAA------TATTGC-AGTTTATATTATGTCAAGATCATTGATACTAC
Reference ( family-864 ) : GTCCGTCCGTCCGT---CTGT--TCTGTTCCGTAGTGCTTCCAA----TA---TGC---TTCCATATCGAA-TTTAC--ACACA-A-C--T--TTTATCTAAATGATATCAA--AATATAGAAGAAAA-AA-TG----CTG-G-TGGATTTTT--GT------------GTAA------TATTGC-AGTTTATATTATGTCAAGATCATTGATACTAC
gi|8934 : GTCCGTTCGTCCGT---CTGC--TCTATTTCGTA-------C-----------TGC---TTCCATATCGAA-TTTAC--ACACA-AAC--T--TTTATCTAAATGATATCAA--AATATAGAAGAAAA-AT-TG----CTG-G-TGGATTTTG--TT------------TTAT------TATTGC-AGTTTATATTTTATCAAGATCATTGATATTAC
gi|8935 : cGTCCGTCCGTCCGT---CTGT--TATGTTGCGCAGTGCATCAAA----TA---TGC---TTCCATATCGAA-TTCAC--ACACACA-A--T--TTTATTTCAATGATATCAA--AATAAAGAAG-ACA-AA-TG----TTG-G-TGGATTATT--GT------------GTAA------TATTTC-ATTTTAAATTATGTCAATATCATTGATACTAC
gi|8936 : cGTCCGTCCGTCCGT---CTGT--CCTGATCCGTAAT----------------------------TATCGAA-CTTAC--ACAAA-AAC--T--TTTATCTAAATGATATCAA--AATATAGAAGAAAACAA-TA----CTG-G-TGTACTTTT--GT------------GTAA------TACTGC-AGTTTATATTATATCGAGATCATTGATGCTAC
gi|8937 : cGTCCGTCAGTCCGT---CTAA--TCTGTTCCGTAGTGCTTCCAA----TA---TGC---TTCCATATCGAA-TTGAC--ACACA-
gi|8937 : cAC--ACACACA-C--T--ATTATCTAAATTATATCAA--AATAAAGAAGAAAA-A--TG----CTG-A-TGGATTTTT--AT------------GTAA------TATTGC-AGTTGATAATATATAAAGATTATTGATACTACcacacacacacacacacacacacacacacacacacacacactattatctaaattatatcaaaataaagaagaaaaatgctgatggatttttatgtaatattgcagttgataatatataaagattattgatactac
gi|8938 : cgtccgtcagtccgtctaatctgttccgtagtgcttccaatatgcttccatatcgaattgacacacacacacacacacacacacacacacacacacacGTCCATTCGTCCGT---CTGT--TCTGTT-------GCTTCCAA----TA---TTC---TTCGGTATCGAA-TTTGT--A-ACA---T--T--TTTATCTAAATGATATCAA--AATA---AAGAAAA-AA-TG----TTT-G-TGGATTTTTTAG-------------GTAA------TATTACAAATTTACATTATGCCAAGACCATTGCTACTA
gi|8939 : cGTCCGCCCGTCCGT---CTGT--TCCGTTCGGTAGTGTTTCAAATAAGTA---TGC---TTCTACATCGAA-TTTG---ATA-A-A-C--T--TTTATCTCAATGATAGCAA--AATATTAAAGACAA-TT-TT----TTGTT-TTGATTTTT--GT------------GTAATACATGTATTGC-AGTTCA
gi|8940 : cGTCCGTCCGTCCGT---CTGT--TCTGGTCCGTAGTGTATCAAA----TA---T-------------------TTAC--GCATG-A----------A-CTAAATGATAACAA--AATATTAAAGAAAA-AA-TG----CTG-T-TGGA-TCTT--AA------------GTAA------TATTGC-AGTT
gi|8941 : cGTTCGTCCGTCCGT---CTGT--TCTGTTCCGTAGTGCTTCCAA----TA---TGC---TTCCATATCGAA-TTTAC--ACACA-A-C--T--TTTATCTAAATGATATCAG--AATATAGAAGAAAA-CA-TG----CTT-G-TGGATTTTT--GT------------GTAA------TATTGC-AGTTTATATTACATCAAGAGCATTGATACTAC
gi|8942 : GTCAGTCCATCCGT---CTGTGTTCTGTTGCGTAGTGCTTCAAA----TA---TGC---TTCCAAATCGAA-TTTAC--ACACA-A-AA-T--TGTATCTAAATAATATTAA--AATAAAGTAGAAAA-AAATG----TTG-G-TGGATTTTT--GT------------GTTA------TATTAC-ATTTGATATTATGTCAAGATCATTGATTCTA
gi|8943 : GTCCGTCCGTCCGT---CTGT--TCTGTTCCTTAGTGCTTTCAA----TA---TGC---TTCCATATCGAAGTGTAC---C------C--T--TTTATCTAAATGATATCAA--A
gi|8944 : GTCCGTCCTTCTGT---CCGT--CC-ATTGACTAGTGCTTTCTA----TA---GGCCGGTGACATATCGAG-TTAAC--ACACA-A-CATT--TTCATCTAAATGATATCAATCGATATAAAACAAAA-AA-TA----TTG-G-TAGATTATT--ATTATACATATTAGATAA------TATTAG-ATTTTATATTATGTTAAGAGCATTGCTAGTA
gi|8945 : GTCTGTCTATCTGT---CTGT---CTGTCGCGTAGTG----------------TG-----TCCATATCGAA-TTTAC--AC---------------ATCT---TG------A--AATGT-------------TG----GTG-G-T---TTTTT---T------------ATAA------AACTAA-AGTTTATAGTATGTCAA---CATTTTTACTAC
gi|8946 : CGTCCGTCCGT---GTGT--TCTGTTCTGT---------------TA---TGC---TTCTATATCAAA-TTTAC--ACACA-A-A--TGTTTTATCTAAATGATGTCTA--GATATAGAAGAAAA-CA-TG----TCG-G-TGGATTTT---GT------------GTAA------TAGTGC-AGTTTATATTATATCAAGATCATTGATACTAC
gi|8947 : CGTCCGTCCGTATTTTTT--TCTGTTCCGTAGTGCTTCCAG----TA---TGC---TTCCATATCGAA-TTTAC--ACACGCA-C--T--TTTATTAAAATGATATCAA--TATATTGAAGAAAA-AA-TG----CTG-G-TGGAATTTT--AT------------GTTA------TATTGC-AGTT
gi|8948 : GTTCGTCCAT---CTGT--TCTGTTATGTAATGCCTCCAA----TAAACCGG---TGACTTATCGAG-TCTAC--ACACA-A-------TTTATCTAAATAATATTAA--AATATAGAAGAAAA-CA-TG----TTG-GCT---TTTTT--TT------------TTAA------TATTGT-ATTTTATATCATGTCAAGATCCTT
gi|8949 : GTCCGTCATT---CTGT--TCTGTTGCGAAGTA-TTCCAA----TA---GGCCGGTGACATATCGAA-TTTA--------------------ATCGAAATTGTATCAA--AGTATAGAAGAAAA-AA-TGTTTTTTT-G-TTGTTTTTT--TT------------TCAA------TATAAT-AATTTATATTATGTCAAGACCACTGTTGCTAC
gi|8950 : CGTCCGT---CCGT---CTGTTCCGTAGTGCTTCCAA----TA---TGC---TTCCATATCGAA-TTTAC--ATACA-AAC--T--TTTATCTTAATGATATCAA--AATATAAAAGAAAA-CA-TG----CTG-A-TGGATTTTT--GT------------GTAA------TGTTAC-ATTTTATATTATATCAAGATCATTGATGCTAC
gi|8951 : GTTTGT---CTGT--TATGTTGCGCAGTGCTTCCAA----TA---TGC---TTTCATATCGAA-TGTGCATACACA-A----T--TTTATCTACATTATATCAA--AATAAAGTAGAAAA-AA-TG----TTG-G-TGGA-TTTT--GT------------GTAA------TATTAC-ATTTTATATTATGTCAAAATAATTGAT
blockSeqs : ATT GT G CA TAAG AAC CGG G AT ACAT GT TC CAA TTTT T C TAG TATACATATTAG TACATG A
blockSeqs : . . C CT . . CGG . . CAA . . AAA . . . G . . .
blockSeqs : . . C CT . . . . . AAC . . AA . . . G . . .
blockSeqs : . . C TT . . . . . CAC . . AA . . . A . . .
blockSeqs : . . C TA . . . . . AAA . . TT . . . G . . .
blockSeqs : . . C CT . . . . . CAC . . AA . . . A . . .
blockSeqs : . . G CT . . . . . AAC . . CA . . . G . . .
blockSeqs : . . C CT . . . . . AC . . AA . . . G . . .
blockSeqs : . . G CT . . . . . AC . . CA . . . A . . .
blockSeqs : . . G CT . . . . . AA . . AA . . . G . . .
blockSeqs : . . C CC . . . . . T . . CA . . . A . . .
blockSeqs : . . C CT . . . . . A . . AA . . . T . . .
blockSeqs : . . A CT . . . . . C . . CA . . . T . . .
blockSeqs : . . G T . . . . . A . . AA . . . G . . .
blockSeqs : . . C . . . . . . A . . A . . . G . . .
blockSeqs : . . G . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : .
blockSeqCons : CT
originalCons : GTCCGTCCGTCCGT---CTGT--TCTGTTCCGTAGTGCTTCCAA----TA---TGC---TTCCATATCGAA-TTTAC--ACACA-A-C--T--TTTATCTAAATGATATCAA--AATATAGAAGAAAA-AA-TG----CTG-G-TGGATTTTT--GT------------GTAA------TATTGC-AGTTTATATTATGTCAAGATCATTGATACTAC
finalCons : GTCCGTCCGTCCGT---CTGT--TCTGTTCCGTAGTGCTTCCAA----TA---TGC---TTCCATATCGAA-TTTAC--ACACA-A-C--T--TTTATCTAAATGATATCAA--AATATAGAAGAAAA-AA-TG----CTG-G-TGGATTTTT--GT------------GTAA------TATTGC-AGTTTATATTATGTCAAGATCATTGATACTAC
Alignments
lowQualScore : 222222 111111111111
lowQualScore : 333 33 3 11 4444 333 777 2 22 222222 33 33 2222 5555 2 2 444 222222222222 666666 2 0
lowQualScore : ... .. . .. .... ... ... . .. ...... .. .. .... .... . . ... ............ ...... . .
lowQualScore : 999 11 4 66 7777 999 888 2 99 111111 11 11 6666 0000 4 4 444 111111111111 888888 4 7
consensus : GTCCGTCCGTCCGT---CTGT--TCTGTTCCGTAGTGCTTCCAA----TA---TGC---TTCCATATCGAA-TTTAC--ACACA-A-C--T--TTTATCTAAATGATATCAA--AATATAGAAGAAAA-AA-TG----CTG-G-TGGATTTTT--GT------------GTAA------TATTGC-AGTTTATATTATGTCAAGATCATTGATACTAC
Reference ( family-864 ) : GTCCGTCCGTCCGT---CTGT--TCTGTTCCGTAGTGCTTCCAA----TA---TGC---TTCCATATCGAA-TTTAC--ACACA-A-C--T--TTTATCTAAATGATATCAA--AATATAGAAGAAAA-AA-TG----CTG-G-TGGATTTTT--GT------------GTAA------TATTGC-AGTTTATATTATGTCAAGATCATTGATACTAC
gi|8934 : GTCCGTTCGTCCGT---CTGC--TCTATTTCGTA-------C-----------TGC---TTCCATATCGAA-TTTAC--ACACA-AAC--T--TTTATCTAAATGATATCAA--AATATAGAAGAAAA-AT-TG----CTG-G-TGGATTTTG--TT------------TTAT------TATTGC-AGTTTATATTTTATCAAGATCATTGATATTAC
gi|8935 : cGTCCGTCCGTCCGT---CTGT--TATGTTGCGCAGTGCATCAAA----TA---TGC---TTCCATATCGAA-TTCAC--ACACACA-A--T--TTTATTTCAATGATATCAA--AATAAAGAAG-ACA-AA-TG----TTG-G-TGGATTATT--GT------------GTAA------TATTTC-ATTTTAAATTATGTCAATATCATTGATACTAC
gi|8936 : cGTCCGTCCGTCCGT---CTGT--CCTGATCCGTAAT----------------------------TATCGAA-CTTAC--ACAAA-AAC--T--TTTATCTAAATGATATCAA--AATATAGAAGAAAACAA-TA----CTG-G-TGTACTTTT--GT------------GTAA------TACTGC-AGTTTATATTATATCGAGATCATTGATGCTAC
gi|8937 : cGTCCGTCAGTCCGT---CTAA--TCTGTTCCGTAGTGCTTCCAA----TA---TGC---TTCCATATCGAA-TTGAC--ACACA-
gi|8937 : cAC--ACACACA-C--T--ATTATCTAAATTATATCAA--AATAAAGAAGAAAA-A--TG----CTG-A-TGGATTTTT--AT------------GTAA------TATTGC-AGTTGATAATATATAAAGATTATTGATACTACcacacacacacacacacacacacacacacacacacacacactattatctaaattatatcaaaataaagaagaaaaatgctgatggatttttatgtaatattgcagttgataatatataaagattattgatactac
gi|8938 : cgtccgtcagtccgtctaatctgttccgtagtgcttccaatatgcttccatatcgaattgacacacacacacacacacacacacacacacacacacacGTCCATTCGTCCGT---CTGT--TCTGTT-------GCTTCCAA----TA---TTC---TTCGGTATCGAA-TTTGT--A-ACA---T--T--TTTATCTAAATGATATCAA--AATA---AAGAAAA-AA-TG----TTT-G-TGGATTTTTTAG-------------GTAA------TATTACAAATTTACATTATGCCAAGACCATTGCTACTA
gi|8939 : cGTCCGCCCGTCCGT---CTGT--TCCGTTCGGTAGTGTTTCAAATAAGTA---TGC---TTCTACATCGAA-TTTG---ATA-A-A-C--T--TTTATCTCAATGATAGCAA--AATATTAAAGACAA-TT-TT----TTGTT-TTGATTTTT--GT------------GTAATACATGTATTGC-AGTTCA
gi|8940 : cGTCCGTCCGTCCGT---CTGT--TCTGGTCCGTAGTGTATCAAA----TA---T-------------------TTAC--GCATG-A----------A-CTAAATGATAACAA--AATATTAAAGAAAA-AA-TG----CTG-T-TGGA-TCTT--AA------------GTAA------TATTGC-AGTT
gi|8941 : cGTTCGTCCGTCCGT---CTGT--TCTGTTCCGTAGTGCTTCCAA----TA---TGC---TTCCATATCGAA-TTTAC--ACACA-A-C--T--TTTATCTAAATGATATCAG--AATATAGAAGAAAA-CA-TG----CTT-G-TGGATTTTT--GT------------GTAA------TATTGC-AGTTTATATTACATCAAGAGCATTGATACTAC
gi|8942 : GTCAGTCCATCCGT---CTGTGTTCTGTTGCGTAGTGCTTCAAA----TA---TGC---TTCCAAATCGAA-TTTAC--ACACA-A-AA-T--TGTATCTAAATAATATTAA--AATAAAGTAGAAAA-AAATG----TTG-G-TGGATTTTT--GT------------GTTA------TATTAC-ATTTGATATTATGTCAAGATCATTGATTCTA
gi|8943 : GTCCGTCCGTCCGT---CTGT--TCTGTTCCTTAGTGCTTTCAA----TA---TGC---TTCCATATCGAAGTGTAC---C------C--T--TTTATCTAAATGATATCAA--A
gi|8944 : GTCCGTCCTTCTGT---CCGT--CC-ATTGACTAGTGCTTTCTA----TA---GGCCGGTGACATATCGAG-TTAAC--ACACA-A-CATT--TTCATCTAAATGATATCAATCGATATAAAACAAAA-AA-TA----TTG-G-TAGATTATT--ATTATACATATTAGATAA------TATTAG-ATTTTATATTATGTTAAGAGCATTGCTAGTA
gi|8945 : GTCTGTCTATCTGT---CTGT---CTGTCGCGTAGTG----------------TG-----TCCATATCGAA-TTTAC--AC---------------ATCT---TG------A--AATGT-------------TG----GTG-G-T---TTTTT---T------------ATAA------AACTAA-AGTTTATAGTATGTCAA---CATTTTTACTAC
gi|8946 : CGTCCGTCCGT---GTGT--TCTGTTCTGT---------------TA---TGC---TTCTATATCAAA-TTTAC--ACACA-A-A--TGTTTTATCTAAATGATGTCTA--GATATAGAAGAAAA-CA-TG----TCG-G-TGGATTTT---GT------------GTAA------TAGTGC-AGTTTATATTATATCAAGATCATTGATACTAC
gi|8947 : CGTCCGTCCGTATTTTTT--TCTGTTCCGTAGTGCTTCCAG----TA---TGC---TTCCATATCGAA-TTTAC--ACACGCA-C--T--TTTATTAAAATGATATCAA--TATATTGAAGAAAA-AA-TG----CTG-G-TGGAATTTT--AT------------GTTA------TATTGC-AGTT
gi|8948 : GTTCGTCCAT---CTGT--TCTGTTATGTAATGCCTCCAA----TAAACCGG---TGACTTATCGAG-TCTAC--ACACA-A-------TTTATCTAAATAATATTAA--AATATAGAAGAAAA-CA-TG----TTG-GCT---TTTTT--TT------------TTAA------TATTGT-ATTTTATATCATGTCAAGATCCTT
gi|8949 : GTCCGTCATT---CTGT--TCTGTTGCGAAGTA-TTCCAA----TA---GGCCGGTGACATATCGAA-TTTA--------------------ATCGAAATTGTATCAA--AGTATAGAAGAAAA-AA-TGTTTTTTT-G-TTGTTTTTT--TT------------TCAA------TATAAT-AATTTATATTATGTCAAGACCACTGTTGCTAC
gi|8950 : CGTCCGT---CCGT---CTGTTCCGTAGTGCTTCCAA----TA---TGC---TTCCATATCGAA-TTTAC--ATACA-AAC--T--TTTATCTTAATGATATCAA--AATATAAAAGAAAA-CA-TG----CTG-A-TGGATTTTT--GT------------GTAA------TGTTAC-ATTTTATATTATATCAAGATCATTGATGCTAC
gi|8951 : GTTTGT---CTGT--TATGTTGCGCAGTGCTTCCAA----TA---TGC---TTTCATATCGAA-TGTGCATACACA-A----T--TTTATCTACATTATATCAA--AATAAAGTAGAAAA-AA-TG----TTG-G-TGGA-TTTT--GT------------GTAA------TATTAC-ATTTTATATTATGTCAAAATAATTGAT