lowQualScore : 1 1 11 4444444444444444 8888888888888888888888
lowQualScore : 6 5 3 7 1 2 4 2 2 88 444 1 8 33 7 55 5555 888 2222222222222222 0 77 8888888888888888888888 8 44 7
lowQualScore : . . . . . . . . . .. ... . . .. . .. .... ... ................ . .. ...................... . .. .
lowQualScore : 7 7 0 6 0 7 0 5 5 44 444 9 6 44 9 22 0000 888 6666666666666666 7 22 4444444444444444444444 8 66 8
consensus : TCAGTACTAACATTATAACAATTAAAAA-T-GTTTATGGAGCACTGTG-GGAAA-A-A--TAG---TGTTGCTAGGG-AAATNAACCAAA----AA--TAAACCATAATNCN------TGTCACGGGATTCGAA-CCCGGAT----C-G-------C-------ATAATCCATA--GATATNACCACTGCGTT
Reference ( gi|36151 ) : TCAGTACTAACATTATAACAATTAAAAA-T-ATTTGTGGATCTCTGTG-GGGAA-A-A--TAG---TGTGGCTCGGA-AAATCAACCAAA----AA--TAAACCATAATGTA------TGTCACGGGATTTGAA-TCCGGAT----C-A-------C-------ATACTCCATA--GATATTACCACTGCGTT
gi|36153 : TCAGTACTAACATTATTACAATTAAAAA-T-ATTTGTGGATCTCTGTG-AGGAA-A-A--TAG---TGTGGCTCGGA-AAATCAACCAAA----AA--TAAACCATAATGTA------TGTCACAGGATTTGAA-CCCGGAT----C-A-------C-------ATACTCAATA--GATATTACAACTGCGTT
gi|36152 : TCAGTACTAACATTAGAACAATTAAAAA-C-ATTTGTGGATCTCTGTG-GGAAA-A-A--TAG---TGTGGCTTGGA-AAATCAACCAAA----AA--TAAACCATACTATA------TGTCACGGGATTTAAA-CCCGGAT----C-T-------C-------ATACTCCATA--GATATTACCACTGCGTT
gi|36154 : TCAGTACTAACATTATAACAATTAAACA-T-ATGTGTGGATCTCTGTG-GGGAA-A-A--TAG---TGTGGCTCGGA-AAATCAACC-AA----AA--TAAACAATAATGTA------TGTCACGGAATTTGAA-CCCGGAT----C-T-------C-------ATACACCATA--GACATTACCACTGCGTT
gi|36155 : ATTAGAAGCT-GTTTATGGATCACTATG-GG-AA-A-A--TAA---TGTTGCTTGAA-AAATGAA-CAAA---------AAAGTATAGTTCT------TGTTAAAGGATTCGAT-CTCGGAT----C-
gi|36156 : AGAAA-TCGTTTTTGAAGCATTGTA-GGAAA-A-A--TAG---TGT---TCAGAGAAATTTATAAAATTTTAA--TAT----TAATTCT------TGTCACAGGATTCAAA-CCTGGATAGCCC-GAGT----C-------ATAATCCATATAGATGTTACCACTGTG
gi|36157 : AAAA-T-GTTTATGGAGCACTGTA-GGAAA-A-AA-TAG---TGTTGCAAGGG-AAATTAACAAAA----AA--GA----AT--TTTT------TATCATAGGATTCAAA-CTCGGGT----C-
gi|36158 : -ATTTATGGAGCACTG-G-AGGAA-A-A--AAAAAATGTTGCTAGGC-AA-TTAACAAAA----AAAATGAACTCT------------TGTTACGGGATACGAA-ACAGGAT----T-G-------CCTGAGTCATAATCAATA--GATATAACCCCTGTG
gi|36159 : TTTATGGAGCATTGTA-GGAAA-A-AACTTG---TATTGCTAGAG-AAATTAA--AAA----AA--AAAAT--TGATACT------TGTCACGGGTTTTGAA-CCCAGAT----C-G-------CCGGTGTCATAATCCATA--GATATGACCACTGC
gi|36160 : TTTATGCAGCACTGTA-GAAAA-A-A--TAG---TGTTGTTAGAA-AAATGAA-CAAA----A----AAATCATACTTCT------TGTCACGAGATTTGAACTCAAGAT----T-T-------CCCTAGCGACAATCCACA--GATATGACAACTGCGCT
gi|36161 : TTTATGGAGCACTATA-GGAAA-A-AA-TAG---TGTTGCTAGGG-AAATGAAC--------AA--TAAAGTATAATAT-------TGTTACGGGATTCGAA-
gi|36162 : TTTATGGAGCAATGTA-GGAAACG-A--TAG---TGTTGCTATGG-AAATTAACCAAA----AC--TAATC--------G------TGTCACGAAATTCGAG-CCTGGAT----T-GCCCGAGTC-------ATAATCCATT--TACAAAACCACT
gi|36163 : TTCATGAAGCACTGTA-GGAAA-A-A---AG---TGTTTCTAGGG-AAAT-----AAA----AA--AAAATC----TGTAAATTCTTGTCACGGGATTCGAA-CCTGGAT----C-
gi|36164 : TTTATGGAGCACTATA-GGAAA-ATA--CAG---TGTCGATAGGG-AAATGAAC--------AA--TATATT-TAATACA------TGTCACAGGATTCGAA-CTTGTAT----C-
gi|36165 : TGTGTAGGAA-A-A--TAG---TGTTGCTTGGG-AAATTAAATGAA----AA---AAAAAAAAATACA------TGTCAGTGGATTCGAA-TTCAGGT----T-GCTTAGGTC-------ATAATCCACA--GGTATGAC
gi|36166 : G-GAAAA-A-A--TGG---TATTGCTAGGG-AAATT--TTAAA----AA--AAAATCTTA-------------TCACAGGACTCGAA-CCCGGAT----C-GCCTGAATC-------ATAATAGACA--GATAAAATCACTGTG
gi|36167 : AA-A-A--TAG---TGTTGCCAGGG-AAATGAA--AAA----AA----------AAT---------TGTTAAAGGATTTGAA-CTCAGAT----CGA-------CCGAGCA-ACAATCCACA--GATATAACCACTGC
gi|36168 : AGA----AA--TAAAC-ATAGTTCT------TGTCAAGAGATTCGAA-CTCGGATTGCCC-AAGT----C-------ATAATCCACA--GATATAACCACTG
Alignments
lowQualScore : 11 2222222 7777777777777777777777
lowQualScore : 5 5 33 2 7 33 1 66 4444 1111111 2 333 2 5555 3333333333333333333333 44 1
lowQualScore : . . .. . . .. . .. .... ....... . ... . .... ...................... .. .
lowQualScore : 7 7 44 4 1 22 0 11 7777 1111111 2 666 4 0000 5555555555555555555555 22 0
consensus : TCAGTACTAACATTATAACAATTAAAAA-T-GTTTATGGAGCACTGTAGG--AAA-A-A--TAGTGTTGCTAGGGAAATNAACCAAA----AATAAAC-ATAA-TNCTTGTCACGGGATTCGAACCC-GGAT----C------GC-----TC-------ATAATCC--ATAGATATNACCACTGCGTT
Reference ( family-862 ) : TCAGTACTAACATTATAACAATTAAAAA-T-GTTTATGGAGCACTGTGGG--AAA-A-A--TAGTGTTGCTAGGGAAATNAACCAAA----AATAAACCATAA-TNCNTGTCACGGGATTCGAACCC-GGAT----C------G-------C-------ATAATCC--ATAGATATNACCACTGCGTT
gi|36151 : TCAGTACTAACATTATAACAATTAAAAA-T-ATTTGTGGATCTCTGTGGG--GAA-A-A--TAGTGTGGCTCGGAAAATCAACCAAA----AATAAACCATAA-TGTATGTCACGGGATTTGAATCC-GGAT----C------A-------C-------ATACTCC--ATAGATATTACCACTGCGTT
gi|36152 : TCAGTACTAACATTAGAACAATTAAAAA-C-ATTTGTGGATCTCTGTGGG--AAA-A-A--TAGTGTGGCTTGGAAAATCAACCAAA----AATAAACCATAC-TATATGTCACGGGATTTAAACCC-GGAT----C------T-------C-------ATACTCC--ATAGATATTACCACTGCGTT
gi|36153 : TCAGTACTAACATTATTACAATTAAAAA-T-ATTTGTGGATCTCTGTGAG--GAA-A-A--TAGTGTGGCTCGGAAAATCAACCAAA----AATAAACCATAA-TGTATGTCACAGGATTTGAACCC-GGAT----C------A-------C-------ATACTCA--ATAGATATTACAACTGCGTT
gi|36154 : TCAGTACTAACATTATAACAATTAAACA-T-ATGTGTGGATCTCTGTGGG--GAA-A-A--TAGTGTGGCTCGGAAAATCAACC-AA----AATAAACAATAA-TGTATGTCACGGAATTTGAACCC-GGAT----C------T-------C-------ATACACC--ATAGACATTACCACTGCGTT
gi|36155 : ATTAGAAGCT-GTTTATGGATCACTATGGG--AAA-A----TAATGTTGCTTGAAAAATGAA-CAAA-------AAAGTATAG-TTCTTGTTAAAGGATTCGATCTC-GGAT----C------
gi|36156 : AGAAA-TCGTTTTTGAAGCATTGTAGG--AAA-A-A--TAGTGTT--CAGAGAAATTTATAAAATTTTAATA----TTAA-TTCTTGTCACAGGATTCAAACCT-GGATAGCCC------GAGT----C-------ATAATCCATATAGATGTTACCACTGTG
gi|36157 : AAAA-T-GTTTATGGAGCACTGTAGG--AAA-AAA--TAGTGTTGCAAGGGAAATTAACAAAA----AAGA----AT---TTTTTATCATAGGATTCAAACTC-GGGT----C------
gi|36158 : TTTATGGAGCACTGGAGGAAAAA-A-A--AAATGTTGCTA-GGCAATTAA-CAAA----AA-AAAT--GAA-CTCTTGTTACGGGATACGAAACA-GGAT----T------GCCTGAGTC-------ATAATCA--ATAGATATAACCCCTGTG
gi|36159 : aTTTATGGAGCATTGTAGG--AAA-A-AACTTGTATTGCTAGAGAAATTAA--AAA----AAAAAAT--TGA-TACTTGTCACGGGTTTTGAACCC-AGAT----C------G-------CCGGTGTCATAATCC--ATAGATATGACCACTGC
gi|36160 : TTTATGCAGCACTGTAGA--AAA-A-A--TAGTGTTGTTAGAAAAATGAA-CAAA----A--AAATCATAC-TTCTTGTCACGAGATTTGAACTCAAGAT----TTCCCTAG-------CG------ACAATCC--ACAGATATGACAACTGCGCT
gi|36161 : TTTATGGAGCACTATAGG--AAA-AAA--TAGTGTTGCTAGGGAAATGAAC--------AATAAAGTATAA-TA-TTGTTACGGGATTCGAA
gi|36162 : TTTATGGAGCAATGTAGG--AAACG-A--TAGTGTTGCTATGGAAATTAACCAAA----ACTAA---------TCGTGTCACGAAATTCGAGCCT-GGAT----T------GCCCGAGTC-------ATAATCC--ATTTACAAAACCACT
gi|36163 : TTCATGAAGCACTGTAGG--AAA-A-A---AGTGTTTCTAGGGAAATAAAA-AAA----AAT---CTGTAAATTCTTGTCACGGGATTCGAACCT-GGAT----C------
gi|36164 : TTTATGGAGCACTATAGG--AAA-ATA--CAGTGTCGATAGGGAAATGAAC--------AATATATT-TAA-TACATGTCACAGGATTCGAACTT-GTAT----C------
gi|36165 : TGTAGG--AAA-A----TAGTGTTGCTTGGGAAATTAAATGAA----AA-AAAAAAAAA-TACATGTCAGTGGATTCGAATTC-AGGT----T------GCTTAGGTC-------ATAATCC--ACAGGTATGAC
gi|36166 : tgGGA--AAA-A-A--TGGTATTGCTAGGGAAATT--TTAAA----AAAAAA--------TCTTATCACAGGACTCGAACCC-GGAT----C------GCCTGAATC-------ATAATAG--ACAGATAAAATCACTGTG
gi|36167 : AA-A-A--TAGTGTTGCCAGGGAAATGAA--AAA----AA--------AA-T---TGTTAAAGGATTTGAACTC-AGAT----C------GA------CCGAGCA-ACAATCC--ACAGATATAACCACTGC
gi|36168 : AGA----AATAAAC-ATAG-TTCTTGTCAAGAGATTCGAACTC-GGAT----T------GCCCAAGTC-------ATAATCC--ACAGATATAACCACTG
Alignments
lowQualScore : 11 2222222 555555555555
lowQualScore : 5 5 55 2 4 33 1 66 6 0000000 0 1 1 2 2 666666666666 44 1
lowQualScore : . . .. . . .. . .. . ....... . . . . . ............ .. .
lowQualScore : 7 7 99 4 7 22 0 11 2 7777777 7 8 0 4 1 222222222222 22 0
consensus : TCAGTACTAACATTATAACAATTAAAAA-T-GTTTATGGAGCACTGTAGG--AAA-A-A--TAGTGTTGCTAGGGAAATNAACCAAAAATAAA-C-A-TAATNCTTGTCACGGGATTCGAACCC-GGATCGCC-GAGTC-----ATAATCC--ATAGATATNACCACTGCGTT
Reference ( family-862 ) : TCAGTACTAACATTATAACAATTAAAAA-T-GTTTATGGAGCACTGTAGG--AAA-A-A--TAGTGTTGCTAGGGAAATNAACCAAAAATAAA-C-A-TAATNCTTGTCACGGGATTCGAACCC-GGATCGC-----TC-----ATAATCC--ATAGATATNACCACTGCGTT
gi|36151 : TCAGTACTAACATTATAACAATTAAAAA-T-ATTTGTGGATCTCTGTGGG--GAA-A-A--TAGTGTGGCTCGGAAAATCAACCAAAAATAAACC-A-TAATGTATGTCACGGGATTTGAATCC-GGATCA-------C-----ATACTCC--ATAGATATTACCACTGCGTT
gi|36152 : TCAGTACTAACATTAGAACAATTAAAAA-C-ATTTGTGGATCTCTGTGGG--AAA-A-A--TAGTGTGGCTTGGAAAATCAACCAAAAATAAACC-A-TACTATATGTCACGGGATTTAAACCC-GGAT--C-----TC-----ATACTCC--ATAGATATTACCACTGCGTT
gi|36153 : TCAGTACTAACATTATTACAATTAAAAA-T-ATTTGTGGATCTCTGTGAG--GAA-A-A--TAGTGTGGCTCGGAAAATCAACCAAAAATAAACC-A-TAATGTATGTCACAGGATTTGAACCC-GGATCA-------C-----ATACTCA--ATAGATATTACAACTGCGTT
gi|36154 : TCAGTACTAACATTATAACAATTAAACA-T-ATGTGTGGATCTCTGTGGG--GAA-A-A--TAGTGTGGCTCGGAAAATCAACC-AAAATAAA-CAA-TAATGTATGTCACGGAATTTGAACCC-GGAT--C-----TC-----ATACACC--ATAGACATTACCACTGCGTT
gi|36155 : ATTAGAAGCT-GTTTATGGATCACTATGGG--AAA-A----TAATGTTGCTTGAAAAATGAA-CAAAA--AAG-T-A-TAGTTCTTGTTAAAGGATTCGATCTC-GGATC
gi|36156 : AGAAA-TCGTTTTTGAAGCATTGTAGG--AAA-A-A--TAGTGTT--CAGAGAAATTTATAAAATTTTAA-T-ATTAATTCTTGTCACAGGATTCAAACCT-GGATAGCCCGAGTC-----ATAATCCATATAGATGTTACCACTGTG
gi|36157 : AAAA-T-GTTTATGGAGCACTGTAGGA-AAA-A-A--TAGTGTTGCAAGGGAAATTAACAAAAAAGA-----A-T--TTTTTATCATAGGATTCAAACTC-GGGTC
gi|36158 : TTTATGGAGCACTGGAGGAAAAA-A-A--AAATGTTGCTA-GGCAATTAA-CAAAAA-AAA-T-G--AACTCTTGTTACGGGATACGAAACA-GGATTGCCTGAGTC-----ATAATCA--ATAGATATAACCCCTGTG
gi|36159 : aTTTATGGAGCATTGTAGG--AAA-A-AACTTGTATTGCTAGAGAAATTAA--AAAAAAAAA-T---TGATACTTGTCACGGGTTTTGAACCC-AGATCGCCGGTGTC-----ATAATCC--ATAGATATGACCACTGC
gi|36160 : TTTATGCAGCACTGTAGA--AAA-A-A--TAGTGTTGTTAGAAAAATGAA-CAAAAA-AAT-C-A-TACTTCTTGTCACGAGATTTGAACTCAAGATTTC-----CCTAGCGACAATCC--ACAGATATGACAACTGCGCT
gi|36161 : TTTATGGAGCACTATAGG--AAA-AAA--TAGTGTTGCTAGGGAAATGAAC----AATAAAGT-A-TAATA-TTGTTACGGGATTCGAA
gi|36162 : TTTATGGAGCAATGTAGG--AAACG-A--TAGTGTTGCTATGGAAATTAACCAAAACTAA----------TCGTGTCACGAAATTCGAGCCT-GGATTGCCCGAGTC-----ATAATCC--ATTTACAAAACCACT
gi|36163 : TTCATGAAGCACTGTAGG--AAA-A-A---AGTGTTTCTAGGGAAATAAAA-AAAAATCTG-T-A--AATTCTTGTCACGGGATTCGAACCT-GGATC
gi|36164 : TTTATGGAGCACTATAGG--AAA-ATA--CAGTGTCGATAGGGAAATGAAC----AATATA-T-T-TAATACATGTCACAGGATTCGAACTT-GTATC
gi|36165 : TGTAGG--AAA-A----TAGTGTTGCTTGGGAAATTAAATGAAAAAAAA-A-A-AAATACATGTCAGTGGATTCGAATTC-AGGTTGCTTAGGTC-----ATAATCC--ACAGGTATGAC
gi|36166 : tgGA--AAA-A-A--TGGTATTGCTAGGGAAATT--TTAAAAAAAAA---------TCTTATCACAGGACTCGAACCC-GGATCGCCTGAATC-----ATAATAG--ACAGATAAAATCACTGTG
gi|36167 : gAA-A-A--TAGTGTTGCCAGGGAAATGAA--AAAAA-AA------------TTGTTAAAGGATTTGAACTC-AGATCGA-----CCGAGCAACAATCC--ACAGATATAACCACTGC
gi|36168 : AGAAATAAA-C-A-TAGTTCTTGTCAAGAGATTCGAACTC-GGATTGCCCAAGTC-----ATAATCC--ACAGATATAACCACTG
Alignments
lowQualScore : 11 2222222 33333333
lowQualScore : 5 5 2 2 4 33 33 1 66 6 0000000 0 1 1 2 33 11111111 44 1
lowQualScore : . . . . . .. .. . .. . ....... . . . . .. ........ .. .
lowQualScore : 7 7 5 4 7 22 22 0 11 2 7777777 7 8 0 4 22 44444444 22 0
consensus : TCAGTACTAACATTATAACAATTAAAAA-T-GTTTATGGAGCACTGTAGG-AAA-A-A--TAG--TGTTGCTAGGGAAATNAACCAAAAATAAA-C-AT-AATNCTTGTCACGGGATTCGAACCC-GGA--TCG-CC-GA-GTCATAATCC--ATAGATATNACCACTGCGTT
Reference ( family-862 ) : TCAGTACTAACATTATAACAATTAAAAA-T-GTTTATGGAGCACTGTAGG-AAA-A-A--TAG--TGTTGCTAGGGAAATNAACCAAAAATAAA-C-AT-AATNCTTGTCACGGGATTCGAACCC-GGA--TCG-CC-GA-GTCATAATCC--ATAGATATNACCACTGCGTT
gi|36151 : TCAGTACTAACATTATAACAATTAAAAA-T-ATTTGTGGATCTCTGTGGG-GAA-A-A--TAG--TGTGGCTCGGAAAATCAACCAAAAATAAACC-AT-AATGTATGTCACGGGATTTGAATCC-GGA--TCA---------CATACTCC--ATAGATATTACCACTGCGTT
gi|36152 : TCAGTACTAACATTAGAACAATTAAAAA-C-ATTTGTGGATCTCTGTGGG-AAA-A-A--TAG--TGTGGCTTGGAAAATCAACCAAAAATAAACC-AT-ACTATATGTCACGGGATTTAAACCC-GGA--TC---------TCATACTCC--ATAGATATTACCACTGCGTT
gi|36153 : TCAGTACTAACATTATTACAATTAAAAA-T-ATTTGTGGATCTCTGTGAG-GAA-A-A--TAG--TGTGGCTCGGAAAATCAACCAAAAATAAACC-AT-AATGTATGTCACAGGATTTGAACCC-GGA--TCA---------CATACTCA--ATAGATATTACAACTGCGTT
gi|36154 : TCAGTACTAACATTATAACAATTAAACA-T-ATGTGTGGATCTCTGTGGG-GAA-A-A--TAG--TGTGGCTCGGAAAATCAACC-AAAATAAA-CAAT-AATGTATGTCACGGAATTTGAACCC-GGA--TC---------TCATACACC--ATAGACATTACCACTGCGTT
gi|36155 : ATTAGAAGCT-GTTTATGGATCACTATGGG-AAA-A----TAA--TGTTGCTTGAAAAATGAA-CAAAA--AAG-T-AT-AGTTCTTGTTAAAGGATTCGATCTC-GGA--TC
gi|36156 : AGAAA-TCGTTTTTGAAGCATTGTAGG-AAA-A-A--TAG--TGTT--CAGAGAAATTTATAAAATTTTAA-T-ATTAATTCTTGTCACAGGATTCAAACCT-GGA--TAGCCC-GA-GTCATAATCCATATAGATGTTACCACTGTG
gi|36157 : AAAA-T-GTTTATGGAGCACTGTAGGAAAA-A-A--TAG--TGTTGCAAGGGAAATTAACAAAAAAGA-----AT---TTTTTATCATAGGATTCAAACTC-GGG--TC
gi|36158 : TTTATGGAGCACTGGAGG-AAA-A-A--AAAAATGTTGCTAGGCAA-TTAAC-AAAAA-AAA-T-G--AACTCTTGTTACGGGATACGAAACA-GGA--TTG-CCTGA-GTCATAATCA--ATAGATATAACCCCTGTG
gi|36159 : aTTTATGGAGCATTGTAGG-AAA-A-AACTTG--TATTGCTAGAGAAATTAA--AAAAAAAAA-T--T-GATACTTGTCACGGGTTTTGAACCC-AGA--TCG-CC-GGTGTCATAATCC--ATAGATATGACCACTGC
gi|36160 : TTTATGCAGCACTGTAGA-AAA-A-A--TAG--TGTTGTTAGAAAAATGAA-CAAAAA-AAT-C-AT-ACTTCTTGTCACGAGATTTGAACTCAAGATTTC--CC-TA-GCGACAATCC--ACAGATATGACAACTGCGCT
gi|36161 : TTTATGGAGCACTATAGG-AAA-AAA--TAG--TGTTGCTAGGGAAATGAAC----AATAAAGT-AT-AATA-TTGTTACGGGATTCGAA
gi|36162 : TTTATGGAGCAATGTAGG-AAACG-A--TAG--TGTTGCTATGGAAATTAACCAAAACTAA----------TCGTGTCACGAAATTCGAGCCT-GGA--TTGCCC-GA-GTCATAATCC--ATTTACAAAACCACT
gi|36163 : TTCATGAAGCACTGTAGG-AAA-A-A---AG--TGTTTCTAGGGAAATAAAA-AAAAATCTG-T-A--AATTCTTGTCACGGGATTCGAACCT-GGA--TC
gi|36164 : TTTATGGAGCACTATAGG-AAA-ATA--CAG--TGTCGATAGGGAAATGAAC----AATATA-T-TT-AATACATGTCACAGGATTCGAACTT-GTA--TC
gi|36165 : TGTAGG-AAA-A----TAG--TGTTGCTTGGGAAATTAAATGAAAAAAAA-A-AA-AATACATGTCAGTGGATTCGAATTC-AGG--TTG-CT-TAGGTCATAATCC--ACAGGTATGAC
gi|36166 : tgGA-AAA-A-A--TGG--TATTGCTAGGGAAATT--TTAAAAAAAAA---------TCTTATCACAGGACTCGAACCC-GGA--TCG-CCTGA-ATCATAATAG--ACAGATAAAATCACTGTG
gi|36167 : gAA-A-A--TAG--TGTTGCCAGGGAAATGAA--AAAAA-AA------------TTGTTAAAGGATTTGAACTC-AGA--TCGACC-GA-GCAACAATCC--ACAGATATAACCACTGC
gi|36168 : AGAAATAAA-C-AT-AGTTCTTGTCAAGAGATTCGAACTC-GGA--TTGCCC-AA-GTCATAATCC--ACAGATATAACCACTG
Alignments
lowQualScore : 11 2222222 33333333
lowQualScore : 5 5 2 2 4 33 33 1 66 6 0000000 0 1 1 2 33 11111111 44 1
lowQualScore : . . . . . .. .. . .. . ....... . . . . .. ........ .. .
lowQualScore : 7 7 5 4 7 22 22 0 11 2 7777777 7 8 0 4 22 44444444 22 0
consensus : TCAGTACTAACATTATAACAATTAAAAA-T-GTTTATGGAGCACTGTAGG-AAA-A-A--TAG--TGTTGCTAGGGAAATNAACCAAAAATAAA-C-AT-AATNCTTGTCACGGGATTCGAACCC-GGA--TCG-CC-GA-GTCATAATCC--ATAGATATNACCACTGCGTT
Reference ( family-862 ) : TCAGTACTAACATTATAACAATTAAAAA-T-GTTTATGGAGCACTGTAGG-AAA-A-A--TAG--TGTTGCTAGGGAAATNAACCAAAAATAAA-C-AT-AATNCTTGTCACGGGATTCGAACCC-GGA--TCG-CC-GA-GTCATAATCC--ATAGATATNACCACTGCGTT
gi|36151 : TCAGTACTAACATTATAACAATTAAAAA-T-ATTTGTGGATCTCTGTGGG-GAA-A-A--TAG--TGTGGCTCGGAAAATCAACCAAAAATAAACC-AT-AATGTATGTCACGGGATTTGAATCC-GGA--TCA---------CATACTCC--ATAGATATTACCACTGCGTT
gi|36152 : TCAGTACTAACATTAGAACAATTAAAAA-C-ATTTGTGGATCTCTGTGGG-AAA-A-A--TAG--TGTGGCTTGGAAAATCAACCAAAAATAAACC-AT-ACTATATGTCACGGGATTTAAACCC-GGA--TC---------TCATACTCC--ATAGATATTACCACTGCGTT
gi|36153 : TCAGTACTAACATTATTACAATTAAAAA-T-ATTTGTGGATCTCTGTGAG-GAA-A-A--TAG--TGTGGCTCGGAAAATCAACCAAAAATAAACC-AT-AATGTATGTCACAGGATTTGAACCC-GGA--TCA---------CATACTCA--ATAGATATTACAACTGCGTT
gi|36154 : TCAGTACTAACATTATAACAATTAAACA-T-ATGTGTGGATCTCTGTGGG-GAA-A-A--TAG--TGTGGCTCGGAAAATCAACC-AAAATAAA-CAAT-AATGTATGTCACGGAATTTGAACCC-GGA--TC---------TCATACACC--ATAGACATTACCACTGCGTT
gi|36155 : ATTAGAAGCT-GTTTATGGATCACTATGGG-AAA-A----TAA--TGTTGCTTGAAAAATGAA-CAAAA--AAG-T-AT-AGTTCTTGTTAAAGGATTCGATCTC-GGA--TC
gi|36156 : AGAAA-TCGTTTTTGAAGCATTGTAGG-AAA-A-A--TAG--TGTT--CAGAGAAATTTATAAAATTTTAA-T-ATTAATTCTTGTCACAGGATTCAAACCT-GGA--TAGCCC-GA-GTCATAATCCATATAGATGTTACCACTGTG
gi|36157 : AAAA-T-GTTTATGGAGCACTGTAGGAAAA-A-A--TAG--TGTTGCAAGGGAAATTAACAAAAAAGA-----AT---TTTTTATCATAGGATTCAAACTC-GGG--TC
gi|36158 : TTTATGGAGCACTGGAGG-AAA-A-A--AAAAATGTTGCTAGGCAA-TTAAC-AAAAA-AAA-T-G--AACTCTTGTTACGGGATACGAAACA-GGA--TTG-CCTGA-GTCATAATCA--ATAGATATAACCCCTGTG
gi|36159 : aTTTATGGAGCATTGTAGG-AAA-A-AACTTG--TATTGCTAGAGAAATTAA--AAAAAAAAA-T--T-GATACTTGTCACGGGTTTTGAACCC-AGA--TCG-CC-GGTGTCATAATCC--ATAGATATGACCACTGC
gi|36160 : TTTATGCAGCACTGTAGA-AAA-A-A--TAG--TGTTGTTAGAAAAATGAA-CAAAAA-AAT-C-AT-ACTTCTTGTCACGAGATTTGAACTCAAGATTTC--CC-TA-GCGACAATCC--ACAGATATGACAACTGCGCT
gi|36161 : TTTATGGAGCACTATAGG-AAA-AAA--TAG--TGTTGCTAGGGAAATGAAC----AATAAAGT-AT-AATA-TTGTTACGGGATTCGAA
gi|36162 : TTTATGGAGCAATGTAGG-AAACG-A--TAG--TGTTGCTATGGAAATTAACCAAAACTAA----------TCGTGTCACGAAATTCGAGCCT-GGA--TTGCCC-GA-GTCATAATCC--ATTTACAAAACCACT
gi|36163 : TTCATGAAGCACTGTAGG-AAA-A-A---AG--TGTTTCTAGGGAAATAAAA-AAAAATCTG-T-A--AATTCTTGTCACGGGATTCGAACCT-GGA--TC
gi|36164 : TTTATGGAGCACTATAGG-AAA-ATA--CAG--TGTCGATAGGGAAATGAAC----AATATA-T-TT-AATACATGTCACAGGATTCGAACTT-GTA--TC
gi|36165 : TGTAGG-AAA-A----TAG--TGTTGCTTGGGAAATTAAATGAAAAAAAA-A-AA-AATACATGTCAGTGGATTCGAATTC-AGG--TTG-CT-TAGGTCATAATCC--ACAGGTATGAC
gi|36166 : tgGA-AAA-A-A--TGG--TATTGCTAGGGAAATT--TTAAAAAAAAA---------TCTTATCACAGGACTCGAACCC-GGA--TCG-CCTGA-ATCATAATAG--ACAGATAAAATCACTGTG
gi|36167 : gAA-A-A--TAG--TGTTGCCAGGGAAATGAA--AAAAA-AA------------TTGTTAAAGGATTTGAACTC-AGA--TCGACC-GA-GCAACAATCC--ACAGATATAACCACTGC
gi|36168 : AGAAATAAA-C-AT-AGTTCTTGTCAAGAGATTCGAACTC-GGA--TTGCCC-AA-GTCATAATCC--ACAGATATAACCACTG
blockSeqs : C C A C A AC AA C CC T ACCAT A A A TT GCCCGA AT T
blockSeqs : . . . . T . . C CC T ACCAT G A . . GCCTGA . T
blockSeqs : . . . . . . . C CC T ACAAT G A . . GCCGGT . T
blockSeqs : . . . . . . . G TA T ATATT T T . . GCCCGA . T
blockSeqs : . . . . . . . T CA G AGTAT T T . . GCTTAG . A
blockSeqs : . . . . . . . T CC A GTAT T T . . GCCTGA . G
blockSeqs : . . . . . T AT T TCAT T T . . GACCGA . G
blockSeqs : . . . . . T TT T ATTT A T . . GCCCAA . A
blockSeqs : . . . . . G C T AAAA T T . . CCTA . G
blockSeqs : . . . . . G C T ACAT A T . . A . A
blockSeqs : . . . . . T C A ATG T G . . . . A
blockSeqs : . . . . . A C A ATT T T . . . . A
blockSeqs : . . . . . G A T GTA A A . .
blockSeqs : . . . . . T C . AT A A . .
blockSeqs : . . . . . T . . A T T . .
blockSeqs : . . . . G . . . T T . .
blockSeqs : . . . T
blockSeqCons : GCCCGA**
originalCons : TCAGTACTAACATTATAACAATTAAAAA-T-GTTTATGGAGCACTGTAGG-AAA-A-A--TAG--TGTTGCTAGGGAAATNAACCAAAAATAAA-C-AT-AATNCTTGTCACGGGATTCGAACCC-GGA--TCG-CC-GA-GTCATAATCC--ATAGATATNACCACTGCGTT
finalCons : TCAGTACTAACATTATAACAATTAAAAA-T-GTTTATGGAGCACTGTAGG-AAA-A-A--TAG--TGTTGCTAGGGAAATNAACCAAAAATAAA-C-AT-AATNCTTGTCACGGGATTCGAACCC-GGA--TCGCCCGA--GTCATAATCC--ATAGATATNACCACTGCGTT
Alignments
lowQualScore : 11 222222 111111
lowQualScore : 5 5 2 2 4 33 33 1 66 6 111111 0 1 1 2 111111 44 1
lowQualScore : . . . . . .. .. . .. . ...... . . . . ...... .. .
lowQualScore : 7 7 5 4 7 22 22 0 11 2 222222 7 8 0 4 444444 22 0
consensus : TCAGTACTAACATTATAACAATTAAAAA-T-GTTTATGGAGCACTGTAGG-AAA-A-A--TAG--TGTTGCTAGGGAAATNAACCAAAAATAAA-C-AT-AATNCTTGTCACGGGATTCGAACCC-GGATCGCCCGAGTCATAATCC--ATAGATATNACCACTGCGTT
Reference ( family-862 ) : TCAGTACTAACATTATAACAATTAAAAA-T-GTTTATGGAGCACTGTAGG-AAA-A-A--TAG--TGTTGCTAGGGAAATNAACCAAAAATAAA-C-AT-AATNCTTGTCACGGGATTCGAACCC-GGATCGCCCGAGTCATAATCC--ATAGATATNACCACTGCGTT
gi|36151 : TCAGTACTAACATTATAACAATTAAAAA-T-ATTTGTGGATCTCTGTGGG-GAA-A-A--TAG--TGTGGCTCGGAAAATCAACCAAAAATAAACC-AT-AATGTATGTCACGGGATTTGAATCC-GGATCA-------CATACTCC--ATAGATATTACCACTGCGTT
gi|36152 : TCAGTACTAACATTAGAACAATTAAAAA-C-ATTTGTGGATCTCTGTGGG-AAA-A-A--TAG--TGTGGCTTGGAAAATCAACCAAAAATAAACC-AT-ACTATATGTCACGGGATTTAAACCC-GGATC-------TCATACTCC--ATAGATATTACCACTGCGTT
gi|36153 : TCAGTACTAACATTATTACAATTAAAAA-T-ATTTGTGGATCTCTGTGAG-GAA-A-A--TAG--TGTGGCTCGGAAAATCAACCAAAAATAAACC-AT-AATGTATGTCACAGGATTTGAACCC-GGATCA-------CATACTCA--ATAGATATTACAACTGCGTT
gi|36154 : TCAGTACTAACATTATAACAATTAAACA-T-ATGTGTGGATCTCTGTGGG-GAA-A-A--TAG--TGTGGCTCGGAAAATCAACC-AAAATAAA-CAAT-AATGTATGTCACGGAATTTGAACCC-GGATC-------TCATACACC--ATAGACATTACCACTGCGTT
gi|36155 : ATTAGAAGCT-GTTTATGGATCACTATGGG-AAA-A----TAA--TGTTGCTTGAAAAATGAA-CAAAA--AAG-T-AT-AGTTCTTGTTAAAGGATTCGATCTC-GGATC
gi|36156 : AGAAA-TCGTTTTTGAAGCATTGTAGG-AAA-A-A--TAG--TGTT--CAGAGAAATTTATAAAATTTTAA-T-ATTAATTCTTGTCACAGGATTCAAACCT-GGATAGCCCGAGTCATAATCCATATAGATGTTACCACTGTG
gi|36157 : AAAA-T-GTTTATGGAGCACTGTAGGAAAA-A-A--TAG--TGTTGCAAGGGAAATTAACAAAAAAGA-----AT---TTTTTATCATAGGATTCAAACTC-GGGTC
gi|36158 : TTTATGGAGCACTGGAGG-AAA-A-A--AAAAATGTTGCTAGGCAA-TTAAC-AAAAA-AAA-T-G--AACTCTTGTTACGGGATACGAAACA-GGATTGCCTGAGTCATAATCA--ATAGATATAACCCCTGTG
gi|36159 : aTTTATGGAGCATTGTAGG-AAA-A-AACTTG--TATTGCTAGAGAAATTAA--AAAAAAAAA-T--T-GATACTTGTCACGGGTTTTGAACCC-AGATCGCCGGTGTCATAATCC--ATAGATATGACCACTGC
gi|36160 : TTTATGCAGCACTGTAGA-AAA-A-A--TAG--TGTTGTTAGAAAAATGAA-CAAAAA-AAT-C-AT-ACTTCTTGTCACGAGATTTGAACTCAAGATTTCCCTAGCGACAATCC--ACAGATATGACAACTGCGCT
gi|36161 : TTTATGGAGCACTATAGG-AAA-AAA--TAG--TGTTGCTAGGGAAATGAAC----AATAAAGT-AT-AATA-TTGTTACGGGATTCGAA
gi|36162 : TTTATGGAGCAATGTAGG-AAACG-A--TAG--TGTTGCTATGGAAATTAACCAAAACTAA----------TCGTGTCACGAAATTCGAGCCT-GGATTGCCCGAGTCATAATCC--ATTTACAAAACCACT
gi|36163 : TTCATGAAGCACTGTAGG-AAA-A-A---AG--TGTTTCTAGGGAAATAAAA-AAAAATCTG-T-A--AATTCTTGTCACGGGATTCGAACCT-GGATC
gi|36164 : TTTATGGAGCACTATAGG-AAA-ATA--CAG--TGTCGATAGGGAAATGAAC----AATATA-T-TT-AATACATGTCACAGGATTCGAACTT-GTATC
gi|36165 : TGTAGG-AAA-A----TAG--TGTTGCTTGGGAAATTAAATGAAAAAAAA-A-AA-AATACATGTCAGTGGATTCGAATTC-AGGTTGCTTAGGTCATAATCC--ACAGGTATGAC
gi|36166 : tgGA-AAA-A-A--TGG--TATTGCTAGGGAAATT--TTAAAAAAAAA---------TCTTATCACAGGACTCGAACCC-GGATCGCCTGAATCATAATAG--ACAGATAAAATCACTGTG
gi|36167 : gAA-A-A--TAG--TGTTGCCAGGGAAATGAA---AAAA-AAA-----------TTGTTAAAGGATTTGAACTC-AGATCGACCGAGCAACAATCC--ACAGATATAACCACTGC
gi|36168 : AGAAATAAA-C-AT-AGTTCTTGTCAAGAGATTCGAACTC-GGATTGCCCAAGTCATAATCC--ACAGATATAACCACTG