lowQualScore : 1 22222222222222222222 111 1 111111111 1111 111111 111 1 11111111 11 1 2222 1
lowQualScore : 44 3 0 0 66 6 66666666666666666666 666 3 9 2 2 1 000 6666 5 4 2 0 555 5 555555555 88888 0 5 0 2 2 33 8 77 2222 5555 2 2 2 333 7777777 777777 333 3 33333333 3 1 44 5555 2 5 2 33 2 2 1 1 2 2 2 33 33 33 77777 77777 3 2 66 0000 1 2 6 8888
lowQualScore : .. . . . .. . .................... ... . . . . . ... .... . . . . ... . ......... ..... . . . . . .. . .. .... .... . . . ... ....... ...... ... . ........ . . .. .... . . . .. . . . . . . . .. .. .. ..... ..... . . .. .... . . . ....
lowQualScore : 66 3 8 5 11 2 55555555555555555555 333 1 6 9 9 2 222 1111 7 4 5 1 111 3 111111111 88888 3 0 8 9 7 77 3 33 3333 3333 7 7 7 999 5555555 333333 000 8 33333333 9 7 99 3333 5 2 5 44 5 5 1 7 6 9 9 99 00 99 11111 77777 1 1 55 3333 3 8 5 5555
consensus : CAGTTTGTTATTTTACAAATCATGG--T-TACAGCTAGGAATT-AAA-ACA-------------------ATAAATG--AT-ATATATGATTCTAGACACAAGA-CGTTTT-ATACTTTTGAAC--GATT----AAAAC-AATTATACAATAT--TAA-TAATTCAGAATTTCTN--------AAC----TATTTTACTATTACCCAAAGCATACCAAAAAGA-TGGAAAC--AAA--TTATT--AAAACAGAGAATATA----A-T-AGA-AAC--T--G----AAA-A----AA---CACCTTT--A-T---TACACCAAGTGAGGAAATGTA-A----TTC-TCCAA-ATA--GAATGTTATATAAT-AT-GCAAATTCAGTT-AATTA-AT--A-AC--G-----ATAATGAAATA-----AAACCTCA-TCTTAAATGGGAA--GAAATATTTAACAACCTTAACTGGAAAAC----CATTCA
Reference ( gi|28678 ) : CAGTTTGTTATTTTACAAATCATGG--T-TCCAGCTAGGAATC-AAA-ACA-------------------ATAAATG--AT-ATATATGATTTTAGACACAAGA-CGTTTT-ATACTTTTGAAC--GATT----AAAAC-AATTATACATTAT--TAA-TAATTCAGAATTTCTC--------AAT----TATTTTACTATTACCCAAAGTATACCAAAAAGA-TGGAAAC--ACA--TTACT--AAAACAGAGAATATA----A-T-AGA-AAC--T--G----AAA-G----AA---CACCGTT--T-T---TACATCAAGTGAGGAAATGTT-A----TTC-TCCTA-ATA--GAATGTTATATAAT-AT-GCAAATTCAGTT-AATTA-AT--A-AC--G-----ATAATGAAATA-----AAACCTCA-TCTCAAATGGGAA--ACAATATTTAACAACCTTGACAGGAAAAC----CATTCA
gi|28677 : CAGTTTGTTATTTTACAAATCATGG--T-TACAGCTAGGAATC-AAA-ACG-------------------ATAAATG--AT-ATATATGATTCTAGACACAAGA-CGTTTTCATACTTTTGAAC--GATT----AAAAC-AATTATACAATAT--TAA-TAATTCAGAATTTCTC--------AAT----TATTTTACTATTACTCGAAGCATATAAAAAAAA-TGGAAAC--ACA--TTATT--TAAACAGAGAATATA----A-T-AGA-AAC--T--G----AAA-A----AA---CACCATT--A-T---AACATCAAGTGAGGAAATGTA-A----TTC-TCCTA-ATA--GAATGTTATATAAT-AT-GCAAATTCAGTT-AATTA-AT--A-AC--G-----ATAATGAAATA-----AAACCTCA-TCTAAAATGGGAA--GAAATATTTAATAACCTTGACTGGAAAAC----CATTCA
gi|28679 : CAGTTTGTTATTTTACAAATCTTGC--T-TACAGCTAGGAATT-TAA-TCA-------------------ATAAATG--GT-ATATATGATTCTAGACACAAGA-CGTTTT-ATACTTTTGAAC--AATT----AAAAC-AATTAATCAATAT--TAT-TAATTCAGAATTTCTA--------AAT----TATGTTATTATTACCCAAAGCATACT-AAAAGA-TGGAAAC--ACA--TTATT--AAAACAGGGAATGTA----A-T-AGA-AAC--T--GAAAAAAA-A----AA---CACCTTT--A-T---TACATCAAGTGAGGCAATGTT-A----TTC-TCCAA-ATA--GAATGTTATTTAAT-AT-GCAAATTCATTT-AATTA-AT--A-AC--G-----ATAATGAAATA-----AAACCTCA-TCTAAAATGGGAA--GAAATATTCAACAACCTTGACTTGAAAAC----CATTCA
gi|28680 : CAGTTTGTTATTTTACTAATCATGG--T-TCTAGCTAGGAATT-AAA-ATATTCATTTATTAAAATTATTATAAATA--AT-ATATATGATTATAGACACAAGA-CGTTTT-ATTAGTTTAAGC--GATT----AAAAT-AATTATACAATAT--TAG-TAATTCAGAATGTCTC--------AAT----AATTTTACTATTACCCAAAGCATACCAAAAAGA-TGGAAAC--AAA--TTATT--AAAACAGTAAATATA----A-T-AGA-AAC--T--G----AAT-A----AA---CACCTTT--A-T---TACAATAGGTGAGGAAATGTA-A----TTC-TCCAA-ATA--GAATGTTATATAAT-AT-GCAAATTCAGTT-AACTA-AT--A-AC--G-----ATAATGAAATA-----AAATCACA-TTTAAAATGGAAA--GAAATATTTAACAACCTTGACTGGAAAAC----CATTCA
gi|28681 : CAATTTATTATTTTACAAAGCATGG--C-TACAGCTAGGAATT-AAA-ACA-------------------ATAAATT--AT-ATATATGATTGTAGATACAAGA-CATTTT-ATAATTTTGAAA--AATT----AAAAC-AATTATACAATAT--AAG-TAACTCAGAATTTCTA--------AAC----TATTTTACTATTATCCGAAGCATACCCAAATGA-TGGAAAT--AGA--TTATT--AAAACAGAGAATATA----C-C-AGA-AAA--T--G----AAA------AA---CACCTTT--A-T---AACACTAAGTGAGAAAATACA-A----TTC-TTCAACATA---AATGTTGTATAAC-AT-ACGAATTAAATT-AATTA-----A-ACTTA-----ATAATGAATTA-----AAACCTCA-TCTTCAATGGGAA--GAAATATTCAACAACCTCAACTGCAAAAC----TGTTCA
gi|28683 : CAATATATTAGTTTACAAATAACGG--C-TACAGCTAGGAATT-AAA-ACA-------------------ATAAATG--AT-ATATATGATTGTAGATACAATA-CATTTT-ATAAATTTGAAA--GATT----AAAAC-AATTATACAAT-T--TAAGTAATTCCGAATTTCTA--------AAC----TA-TTTACTATTATCCGAAGCATATCCAAAAGA-TGGAAAC--AGA--TTATC--AAAACAGAGAATA-A----A-TAAGA-AAT--T--G----AAA-ACAACAA---CACCTTT--T-T---TACACCAAGTGAGATAATGCA-A----TTC-TCCGA-CTA--AAATGTTATATGAC-AT-GCAAATTAAATT-AATTG-AT--A-TT--G-----ATAATGAAATA-----AAACCTCA-GCTCCAGTGGGAA--GAAATATTCATCAACATCAACTGGAAAAC----TATT
gi|28684 : CAGTTTGTTATTTAACAAATCATGG--T-TACAGCTAGGAAAT-AAA-ACA-------------------TAAAATG--AT-GTATATAATTCTAGACACAAGA-CGTTTT-ATACTTTTGAAC--GATT----AAATC-AAATATACAATAT--ATG-TAATTCAAATTTTCTC--------AAT----TATTCTACTATTACCCAAAGCATACCAAAAAGA-AGGAAAC--AAA--TAATT--GAAACAGAGAATATA----A-T-AGA-AAC--T--G----AAA-A----AAACCCACCTTT--A-T---TACATCAGTTGAGGAAATGTA-A----TTC-TCCAA-AAA--GAATGTTATATAAT-AT-GCAAATTCTGTTAAATTA-AT--A-AC--A-----A
gi|28682 : CAGTTTGCTATTTAATAAATCATGA--T-GGCAGCAAGGAATA-AAA-AC-------------------------TG--AT-ATATATGATTCTAACCACAAAA-AGTTTT-ATACTTTTGAAA--GATT----AACAC-AATTATACCATGT--AAA-CAACTCGGAATTGCTC--------AAT----TATTTCGCCACTACCAAAAGCATCCCAAAAAGA-TGGAATC--AAA--TTATT--GAAATACAGAATATA----A-T-ATA-ATT--T--G----AAT-A----AA---CACC-TTCAT-C---TACACCAAGTGAGGAAATGCA-A----CTC-TCCAA-ATA--GAATTTTGTATAAC-AT-GCAAATTCAGTT-AATTT-AT--A-TT--G-----ATAATGAAATA-----AAATCGCA-TCTTAAATGGGAA--GAAATTTTTAACAACCTTAACTGGAAAAC----CATTCA
gi|28685 : CAATTTACGATTCAACAAATCATTG--T-CATATCTAGGAATT-AAA-ACA-------------------TTGAATT--AT-ATATACGATTCTAGTCAAAAAA-TATTTT-ATACTTTTAAAA--GATT----AAAAC-AATTTTACAATAT--TAA-TTATTTAGAATTTCTA--------AAC----TATTTCACTATATTCCAAAACACACTTAAAAGA-TGGAAAC--AAA--TTATA--AAAACAGAAAATGTA----C-T-AGA-AAT--TTAA----AAA-T----AA---CACCTTT--A-T---TATACCAATTGACAAAA-GTA-A----TTT-TCCAA-ATA--AAGTGTTATATAAT-TT-GCAAA-----TT-AATTA-AC--A-CT--G-----ACTATAAAATA-----AAACCCCA-TCTTCATTTGAAA--AGAATATTTAGCAACCTTAACTAGAAAATCGTACATTCA
gi|28686 : CAGTTTATTATTTTACAAATAATGG--T-TAGAAGTAGGAATT-TAA-ACA-------------------ATATATA--GT-ATATATGATTCTAGACACAAGA-CATTTT-ATACTTTTGGAA--GATA----AACAC-AAGTGTACAATAT--AAA-CACTTCAGAAATTCTA--------AAC----TTTTTCACTATAACCAGAAGCATACCAAAAAGAGTG---AC--ACAGCTTATT--AAAACAGAGGATATA----
gi|28687 : CATTTTAATATTTTATTAATCATGG--T-TACAGCCAGGAATTAAAA-ACA-------------------ATAAATGACAT-ATATATGATCCTGGACACAAGA-CGTTT------------AT--CATT-------AC-AAGTATGCAATATGATAAGTAACTCAGCCTTTCTTAGACTTAAAAC----TATTTCACTTTTACCCAAAGTA-A---------------------A--TTATT--AAAACAAAGAATTTG----A-T-AAA-AAT--T--------AA-T----AA---AACCTCT--T-TCAACACACCAAGTGACG-AATGCA-A----TAC-ACCAA-GTGACGAATGCAATATTAC-A--GCAAAT
gi|28688 : TTATTTTATAAAGAATGG--TATGCAAA-AGGTATC-AAGTACA-------------------TCAAAC---AC-ATATTTGATAGTAGGCAAAAAA-CGTTTT-ATACATTT---C--AATTTGTAAAAGCTAAGTACACAC--T--TAA-TAATTAAGATTTTTTA--------AAA----TATTATACTTTAATTGAAAGCATACCAAAAGTA-TGGAAAC--AAA----ACTTGAAAACCGACAACATAGCTGA-T-AAT-AAT----------AAA-C----AA----ATTAGC--T-TAA-TGCAACAAATT-CGAAACCTC-AAGAGT----CCAA-ATA--AATTTTTATACAAC-AG-AC-AATTAAA---AAACA-CT--A-AC--A-----ATATT--AATATTATCAAACCCCA-TATTAAATGGGAA--TCAGAAAGTACGAACATTAACTGGAA
gi|28689 : TTATTTTATAAAAAATGGCAT-TCAAA--AGGTATC-AAGTACA--------------------TAAAAC--A--ACTTTTGATAGTAGACAAAAAAACATTCT-ATACTTTTCAATTTG-TT----AAAGC-AAA-ATACCTACT--TAA-AAGTTCAGATTTTTTT--------AAAA---TATTATACTTTAATTGAAAGCATTCCAAAGTTA-TGGAAAC--AAAATTTA----AAAGCAAACAATATA----G-C-TGACAATAAT--G----AAG-A----AA---TGAATTT--A-T---TGCAACAAATCA-GAAACCTTAA----ATG-TCCAA-ATA--AACTTTTATGTAAT-AG-ACAA------CT-AAAAA-AT--ATAC--GAAAGCATATTATAATC-----AAACCTCA-TATTAAATGGGAA--
gi|28690 : -ACA-------------------ATAAATG--ATTATATATGATTCTTGACACAAGA-TGTATT-ATACTTTTGAAC--GATT----AAAAC-AACTATACAATAT--AGG-TAATTCAGAATTTCTC--------AAT----TATGTTACTACTACCGAAAGCATACCAAAACGA-TGGAAAC--AAA--TTATT--AAAACAAAGAATATA----A-C-AGA-AAC--T--G----AAA-A----AAAA-CACCTTT--A-T---TACATCAAGTGAGGAAATGTA-A----TTC-TCCAA-ATA--GAATGTTATATAAT-AT-GTAAATTCAGGA-AATTA-TT--A-AT--G-----ATAATGTAATA-----AAAC-------------GGGAA--AGAATATTTAACAAGCTTAACCGGAAAAC----CATTCAttaaaagatgcgaacataaactggaaa
gi|28691 : AGACAAAAAA-CATTCT-ATACTTTTCAATTTG-TT----AAAGCTAA--ATACTTTCT--TTA-AAAATCAGATTTTTTA--------AATAATATACTTTA--ATTG---AAAGCATTCCAAAGGTA-TGGAAACAAAAA--TTA----AAAACAAACA--ATA----A-T---G-AAC--A--A----ATA-G----A---------TT--TAT---TGCAATAAATCA-GAAACCTC-A----AACGTCCAA-ATA--AACTTTTATATAAT-AG-AC-AACTAAG---AATCATACGAA-AC--A-----ATATTATAATC-----AAACCTCA-TATTAAATGGGAATTAGAAGA--TAGGAACATTAACTGGAAA
gi|28692 : TAT--AAG-TAATTCAGAATTTCTA--------AAC----TATTTCATTATAAGTCAAAGCATACCAAAA-GA-TGGAAAC--ACA--TTA-T--AAAACAGAGAATAGA----C-T-AGA-AAT--T--G----AAATA----AA---CACCGTT--T-T---TTCATCAAGTAAGAAAATGTA-A----TTC-TCCAA-ATA--GAATGTTATATAGTAAT-GT-AATTC
gi|28693 : ATCTA----ACT-AGA-AAT--T--A----AAA-A----AAAAACACCTTT--A-T---TACACCAATTGAGAAAATACA-A----TTC-TCCAA-ATA--AAATGTTATATAAC-AT-GCAAATTAAATT-AGTAA-AT--A-TT--G-----ACAATAAAATA-----AAGCCTCAGTTTCAA-TGGGAA--GAAATATTTAACAACCTTCACCGGAAAAT----CATTTA
gi|28694 : TGTA-A----TTC-TCCAA-ATA--GAATGTTATATAGT-ATTGCAAATTCAGAC-AACTA-AT--A-TT--A-----ATAATGAAATA-----AAACCTCA-TATTCAATGGGAA--GAAACA-TTAACAACCTTAAACGGGAAAC----TATTCA
Alignments
lowQualScore : 22222222222222222222 111111111 1111 111 111
lowQualScore : 555 3 3 5 33333333333333333333 555 2 0 2 2 0 888 5555 5 3 2 444 5 0 000000000 44 0 0 2 33 2 555555 2 2 888 5555 2 3333 000 2 2 2 2 33 2 2 0 1 2 2 33 2 33 66666 77777 1 11 000 33 0 2 7777
lowQualScore : ... . . . .................... ... . . . . . ... .... . . . ... . . ......... .. . . . .. . ...... . . ... .... . .... ... . . . . .. . . . . . . .. . .. ..... ..... . .. ... .. . . ....
lowQualScore : 444 1 1 7 99999999999999999999 111 9 1 7 7 5 999 7777 3 5 5 222 0 4 111111111 22 8 2 2 44 5 444444 5 5 222 3333 5 1111 333 5 5 2 4 22 4 4 9 9 7 7 77 7 77 77777 11111 2 77 000 99 8 9 7777
consensus : CAGTTTGTTATTTTACAAATCATGG---T-TACAGCTAGGAATT-AAA-ACA-------------------ATAAATG--AT-ATATATGATTCTAGACACAAGA-CGTTTT-ATACTTTTGAAC--GATT----AAAAC-AATTATACAATA-T--TAA-TAATTCAGAATTTCT--------NAAC-TATTTTACTATTACCCAAAGCATACCAAAAAGATGGAAACAAA--TTATTAAAA-CAGAGAATATA----A-T-AGA-AAC--TG----AAA-A----AA---CACCTTT-AT-TACACCAAGTGAGGAAATGTAATTCTCCAA-ATA--GAATGTTATATAAT-AT-GCAAATTCAGTT-AATTA-AT--A-AC--GA-----TAATGAAATA-----AAACCTCATCTTAAATGGGA---A--GAAATATTTAAC-AACCTTAACTGGAAAAC----CATTCA
Reference ( family-861 ) : CAGTTTGTTATTTTACAAATCATGG---T-TACAGCTAGGAATT-AAA-ACA-------------------ATAAATG--AT-ATATATGATTCTAGACACAAGA-CGTTTT-ATACTTTTGAAC--GATT----AAAAC-AATTATACAATA-T--TAA-TAATTCAGAATTTCT--------NAAC-TATTTTACTATTACCCAAAGCATACCAAAAAGATGGAAACAAA--TTATTAAAA-CAGAGAATATA----A-T-AGA-AAC--TG----AAA-A----AA---CACCTTT-AT-TACACCAAGTGAGGAAATGTAATTCTCCAA-ATA--GAATGTTATATAAT-AT-GCAAATTCAGTT-AATTA-AT--A-AC--GA-----TAATGAAATA-----AAACCTCATCTTAAATGGGA---A--GAAATATTTAAC-AACCTTAACTGGAAAAC----CATTCA
gi|28677 : CAGTTTGTTATTTTACAAATCATGG---T-TACAGCTAGGAATC-AAA-ACG-------------------ATAAATG--AT-ATATATGATTCTAGACACAAGA-CGTTTTCATACTTTTGAAC--GATT----AAAAC-AATTATACAATA-T--TAA-TAATTCAGAATTTCT--------CAAT-TATTTTACTATTACTCGAAGCATATAAAAAAAATGGAAACACA--TTATTTAAA-CAGAGAATATA----A-T-AGA-AAC--TG----AAA-A----AA---CACCATT-AT-AACATCAAGTGAGGAAATGTAATTCTCCTA-ATA--GAATGTTATATAAT-AT-GCAAATTCAGTT-AATTA-AT--A-AC--GA-----TAATGAAATA-----AAACCTCATCTAAAATGGGA---A--GAAATATTTAAT-AACCTTGACTGGAAAAC----CATTCA
gi|28678 : CAGTTTGTTATTTTACAAATCATGG---T-TCCAGCTAGGAATC-AAA-ACA-------------------ATAAATG--AT-ATATATGATTTTAGACACAAGA-CGTTTT-ATACTTTTGAAC--GATT----AAAAC-AATTATACATTA-T--TAA-TAATTCAGAATTTCT--------CAAT-TATTTTACTATTACCCAAAGTATACCAAAAAGATGGAAACACA--TTACTAAAA-CAGAGAATATA----A-T-AGA-AAC--TG----AAA-G----AA---CACCGTT-TT-TACATCAAGTGAGGAAATGTTATTCTCCTA-ATA--GAATGTTATATAAT-AT-GCAAATTCAGTT-AATTA-AT--A-AC--GA-----TAATGAAATA-----AAACCTCATCTCAAATGGGA---A--ACAATATTTAAC-AACCTTGACAGGAAAAC----CATTCA
gi|28679 : CAGTTTGTTATTTTACAAATCTTGC---T-TACAGCTAGGAATT-TAA-TCA-------------------ATAAATG--GT-ATATATGATTCTAGACACAAGA-CGTTTT-ATACTTTTGAAC--AATT----AAAAC-AATTAATCAATA-T--TAT-TAATTCAGAATTTCT--------AAAT-TATGTTATTATTACCCAAAGCATACT-AAAAGATGGAAACACA--TTATTAAAA-CAGGGAATGTA----A-T-AGA-AAC--TGAAAAAAA-A----AA---CACCTTT-AT-TACATCAAGTGAGGCAATGTTATTCTCCAA-ATA--GAATGTTATTTAAT-AT-GCAAATTCATTT-AATTA-AT--A-AC--GA-----TAATGAAATA-----AAACCTCATCTAAAATGGGA---A--GAAATATTCAAC-AACCTTGACTTGAAAAC----CATTCA
gi|28680 : CAGTTTGTTATTTTACTAATCATGG---T-TCTAGCTAGGAATT-AAA-ATATTCATTTATTAAAATTATTATAAATA--AT-ATATATGATTATAGACACAAGA-CGTTTT-ATTAGTTTAAGC--GATT----AAAAT-AATTATACAATA-T--TAG-TAATTCAGAATGTCT--------CAAT-AATTTTACTATTACCCAAAGCATACCAAAAAGATGGAAACAAA--TTATTAAAA-CAGTAAATATA----A-T-AGA-AAC--TG----AAT-A----AA---CACCTTT-AT-TACAATAGGTGAGGAAATGTAATTCTCCAA-ATA--GAATGTTATATAAT-AT-GCAAATTCAGTT-AACTA-AT--A-AC--GA-----TAATGAAATA-----AAATCACATTTAAAATGGAA---A--GAAATATTTAAC-AACCTTGACTGGAAAAC----CATTCA
gi|28681 : CAATTTATTATTTTACAAAGCATGG---C-TACAGCTAGGAATT-AAA-ACA-------------------ATAAATT--AT-ATATATGATTGTAGATACAAGA-CATTTT-ATAATTTTGAAA--AATT----AAAAC-AATTATACAATA-T--AAG-TAACTCAGAATTTCT--------AAAC-TATTTTACTATTATCCGAAGCATACCCAAATGATGGAAATAGA--TTATTAAAA-CAGAGAATATA----C-C-AGA-AAA--TG-----AA-A----AA---CACCTTT-AT-AACACTAAGTGAGAAAATACAATTCTTCAACATA---AATGTTGTATAAC-AT-ACGAATTAAATT-AATTA-----A-ACTTAA-----TAATGAATTA-----AAACCTCATCTTCAATGGGA---A--GAAATATTCAAC-AACCTCAACTGCAAAAC----TGTTCA
gi|28682 : CAGTTTGCTATTTAATAAATCATGA---T-GGCAGCAAGGAATA-AAA-AC-------------------------TG--AT-ATATATGATTCTAACCACAAAA-AGTTTT-ATACTTTTGAAA--GATT----AACAC-AATTATACCATG-T--AAA-CAACTCGGAATTGCT--------CAAT-TATTTCGCCACTACCAAAAGCATCCCAAAAAGATGGAATCAAA--TTATTGAAA-TACAGAATATA----A-T-ATA-ATT--TG----AAT-A----AA---CACCTTC-ATCTACACCAAGTGAGGAAATGCAACTCTCCAA-ATA--GAATTTTGTATAAC-AT-GCAAATTCAGTT-AATTT-AT--A-TT--GA-----TAATGAAATA-----AAATCGCATCTTAAATGGGA---A--GAAATTTTTAAC-AACCTTAACTGGAAAAC----CATTCA
gi|28683 : CAATATATTAGTTTACAAATAACGG---C-TACAGCTAGGAATT-AAA-ACA-------------------ATAAATG--AT-ATATATGATTGTAGATACAATA-CATTTT-ATAAATTTGAAA--GATT----AAAAC-AATTATACAAT--T--TAAGTAATTCCGAATTTCT--------AAAC-TA-TTTACTATTATCCGAAGCATATCCAAAAGATGGAAACAGA--TTATCAAAA-CAGAGAATA-A----A-TAAGA-AAT--TG----AAA-ACAACAA---CACCTTT-TT-TACACCAAGTGAGATAATGCAATTCTCCGA-CTA--AAATGTTATATGAC-AT-GCAAATTAAATT-AATTG-AT--A-TT--GA-----TAATGAAATA-----AAACCTCAGCTCCAGTGGGA---A--GAAATATTCATC-AACATCAACTGGAAAAC----TATT
gi|28684 : CAGTTTGTTATTTAACAAATCATGG---T-TACAGCTAGGAAAT-AAA-ACA-------------------TAAAATG--AT-GTATATAATTCTAGACACAAGA-CGTTTT-ATACTTTTGAAC--GATT----AAATC-AAATATACAATA-T--ATG-TAATTCAAATTTTCT--------CAAT-TATTCTACTATTACCCAAAGCATACCAAAAAGAAGGAAACAAA--TAATTGAAA-CAGAGAATATA----A-T-AGA-AAC--TG----AAA-A----AAACCCACCTTT-AT-TACATCAGTTGAGGAAATGTAATTCTCCAA-AAA--GAATGTTATATAAT-AT-GCAAATTCTGTTAAATTA-AT--A-AC--AA-----
gi|28685 : CAATTTACGATTCAACAAATCATTG---T-CATATCTAGGAATT-AAA-ACA-------------------TTGAATT--AT-ATATACGATTCTAGTCAAAAAA-TATTTT-ATACTTTTAAAA--GATT----AAAAC-AATTTTACAATA-T--TAA-TTATTTAGAATTTCT--------AAAC-TATTTCACTATATTCCAAAACACACTTAAAAGATGGAAACAAA--TTATAAAAA-CAGAAAATGTA----C-T-AGA-AAT--TT----AAA-AAT--AA---CACCTTT-AT-TATACCAATTGACAAAA-GTAATTTTCCAA-ATA--AAGTGTTATATAAT-TT-GCAAA-----TT-AATTA-AC--A-CT--GA-----CTATAAAATA-----AAACCCCATCTTCATTTGAA---A--AGAATATTTAGC-AACCTTAACTAGAAAATCGTACATTCA
gi|28686 : CAGTTTATTATTTTACAAATAATGG---T-TAGAAGTAGGAATT-TAA-ACA-------------------ATATATA--GT-ATATATGATTCTAGACACAAGA-CATTTT-ATACTTTTGGAA--GATA----AACAC-AAGTGTACAATA-T--AAA-CACTTCAGAAATTCT--------AAAC-TTTTTCACTATAACCAGAAGCATACCAAAAAGAGTGACACAGC--TTATTAAAA-CAGAGGATATA----
gi|28687 : CATTTTAATATTTTATTAATCATGG---T-TACAGCCAGGAATTAAAA-ACA-------------------ATAAATGACAT-ATATATGATCCTGGACACAAGA-CGTTT------------AT--CATT-------AC-AAGTATGCAATA-TGATAAGTAACTCAGCCTTTCTTAGACTTAAAAC-TATTTCACTTTTACCCAAAG-------------------TAAA--TTATTAAAA-CAAAGAATTTG----A-T-AAA-AAT--TA----ATA-A----AA---CCTCTTTCAA-CACACCAAGTGACG-AATGCAATACACCAA-GTGACGAATGCAATATTAC-A--GCAAAT
gi|28688 : TTATTTTATAAAGAATGG---TATGCAAA-AGGTATC-AAGTACA-------------------TCAAAC---AC-ATATTTGATAGTAGGCAAAAAA-CGTTTT-ATACATTT---C--AATTTGTAAAAGCTAAGTACACACT-----TAA-TAATTAAGATTTTTT--------AAAA-TATTATACTTTAATTGAAAGCATACCAAAAGTATGGAAACAAA--ACTTGAAAA-CCGACAACATAGCTGA-T-AAT-AA---TA----AAC-A----AAT--TAGC-TT-AA-TGCAACAAATTCGAAACCTCAAGAGTCCAA-ATA--AATTTTTATACAAC-AG-AC-AATTAAA---AAACA-CT--A-AC--AA-----TATT--AATATTATCAAACCCCATATTAAATGGGAATCA--GAAA---GTACG-AACATTAACTGGAA
gi|28689 : TTATTTTATAAAAAATGGCATT-CAAA---AGGTATC-AAGTACA--------------------TAAAAC--A--ACTTTTGATAGTAGACAAAAAAACATTCT-ATACTTTTCAATTTG-TT----AAAGC-AAA-ATACC-TACT--TAA-AAGTTCAGATTTTTT--------TAAAATATTATACTTTAATTGAAAGCATTCCAAAGTTATGGAAACAAA--AT-TTAAAAGCAAACAATATA----G-C-TGACAATAATG----AAG-A----AA---TGAATTT-AT-TGCAACAAATCAGAAACCTTAAATGTCCAA-ATA--AACTTTTATGTAAT-AG-ACAA------CT-AAAAA-AT--ATAC--GAAAGCATATTATAATC-----AAACCTCATATTAAATGGGA---ATTAAAAGAT---GCGAACATAAACTGGAAA
gi|28690 : -ACA-------------------ATAAATG--ATTATATATGATTCTTGACACAAGA-TGTATT-ATACTTTTGAAC--GATT----AAAAC-AACTATACAATA-T--AGG-TAATTCAGAATTTCT--------CAAT-TATGTTACTACTACCGAAAGCATACCAAAACGATGGAAACAAA--TTATTAAAA-CAAAGAATATA----A-C-AGA-AAC--TG----AAA-A----AAAA-CACCTTT-AT-TACATCAAGTGAGGAAATGTAATTCTCCAA-ATA--GAATGTTATATAAT-AT-GTAAATTCAGGA-AATTA-TT--A-AT--GA-----TAATGTAATA-----AAAC------------GGGA---A--AGAATATTTAAC-AAGCTTAACCGGAAAAC----CATTCA
gi|28691 : AGACAAAAAA-CATTCT-ATACTTTTCAATTTG-TT----AAAGCTAA--ATACTTTC-T--TTA-AAAATCAGA-TTTTT--------TAAA-TAATATACTTTAATTGAAAGCATTCCAAAGGTATGGAAACAAAAATTA--AAAA-CAAACAATA---------------A---TG----AAC-A----AA---TAGATTT-AT-TGCAATAAATCAGAAACCTCAAACGTCCAA-ATA--AACTTTTATATAAT-AG-ACAA-CTAAG---AATCATACGAA-AC--AA-----TATTATAATC-----AAACCTCATATTAAATGGGAATTA--GAAG-A--TAGG-AACATTAACTGGAAA
gi|28692 : TA-T--AAG-TAATTCAGAATTTCT--------AAAC-TATTTCATTATAAGTCAAAGCATACCAAAA-GATGGAAACACA--TTA-TAAAA-CAGAGAATAGA----C-T-AGA-AAT--TG----AAATA----AA---CACCGTT-TT-TTCATCAAGTAAGAAAATGTAATTCTCCAA-ATA--GAATGTTATATAGTAAT-GT-AATTC
gi|28693 : ATCTA----ACT-AGA-AAT--TA----AAA-AAAA-AA---CACCTTT-AT-TACACCAATTGAGAAAATACAATTCTCCAA-ATA--AAATGTTATATAAC-AT-GCAAATTAAATT-AGTAA-AT--A-TT--GA-----CAATAAAATA-----AAGCCTCAGTTTCAATGGGA---A--GAAATATTTAAC-AACCTTCACCGGAAAAT----CATTTA
gi|28694 : TGTAATTCTCCAA-ATA--GAATGTTATATAGT-ATTGCAAATTCAGAC-AACTA-AT--A-TT--AA-----TAATGAAATA-----AAACCTCATATTCAATGGGA---A--GAAACA-TTAAC-AACCTTAAACGGGAAAC----TATTCA
Alignments
lowQualScore : 22222222222222222222 111111111 1111 111 111
lowQualScore : 555 3 3 5 33333333333333333333 555 2 0 2 2 0 888 5555 5 3 2 444 5 0 000000000 44 0 0 2 33 2 555555 2 2 888 5555 2 3333 000 2 2 2 2 33 2 2 0 1 2 2 33 2 33 66666 77777 1 11 000 33 0 2 7777
lowQualScore : ... . . . .................... ... . . . . . ... .... . . . ... . . ......... .. . . . .. . ...... . . ... .... . .... ... . . . . .. . . . . . . .. . .. ..... ..... . .. ... .. . . ....
lowQualScore : 444 1 1 7 99999999999999999999 111 9 1 7 7 5 999 7777 3 5 5 222 0 4 111111111 22 8 2 2 44 5 444444 5 5 222 3333 5 1111 333 5 5 2 4 22 4 4 9 9 7 7 77 7 77 77777 11111 2 77 000 99 8 9 7777
consensus : CAGTTTGTTATTTTACAAATCATGG---T-TACAGCTAGGAATT-AAA-ACA-------------------ATAAATG--AT-ATATATGATTCTAGACACAAGA-CGTTTT-ATACTTTTGAAC--GATT----AAAAC-AATTATACAATA-T--TAA-TAATTCAGAATTTCT--------NAAC-TATTTTACTATTACCCAAAGCATACCAAAAAGATGGAAACAAA--TTATTAAAA-CAGAGAATATA----A-T-AGA-AAC--TG----AAA-A----AA---CACCTTT-AT-TACACCAAGTGAGGAAATGTAATTCTCCAA-ATA--GAATGTTATATAAT-AT-GCAAATTCAGTT-AATTA-AT--A-AC--GA-----TAATGAAATA-----AAACCTCATCTTAAATGGGA---A--GAAATATTTAAC-AACCTTAACTGGAAAAC----CATTCA
Reference ( family-861 ) : CAGTTTGTTATTTTACAAATCATGG---T-TACAGCTAGGAATT-AAA-ACA-------------------ATAAATG--AT-ATATATGATTCTAGACACAAGA-CGTTTT-ATACTTTTGAAC--GATT----AAAAC-AATTATACAATA-T--TAA-TAATTCAGAATTTCT--------NAAC-TATTTTACTATTACCCAAAGCATACCAAAAAGATGGAAACAAA--TTATTAAAA-CAGAGAATATA----A-T-AGA-AAC--TG----AAA-A----AA---CACCTTT-AT-TACACCAAGTGAGGAAATGTAATTCTCCAA-ATA--GAATGTTATATAAT-AT-GCAAATTCAGTT-AATTA-AT--A-AC--GA-----TAATGAAATA-----AAACCTCATCTTAAATGGGA---A--GAAATATTTAAC-AACCTTAACTGGAAAAC----CATTCA
gi|28677 : CAGTTTGTTATTTTACAAATCATGG---T-TACAGCTAGGAATC-AAA-ACG-------------------ATAAATG--AT-ATATATGATTCTAGACACAAGA-CGTTTTCATACTTTTGAAC--GATT----AAAAC-AATTATACAATA-T--TAA-TAATTCAGAATTTCT--------CAAT-TATTTTACTATTACTCGAAGCATATAAAAAAAATGGAAACACA--TTATTTAAA-CAGAGAATATA----A-T-AGA-AAC--TG----AAA-A----AA---CACCATT-AT-AACATCAAGTGAGGAAATGTAATTCTCCTA-ATA--GAATGTTATATAAT-AT-GCAAATTCAGTT-AATTA-AT--A-AC--GA-----TAATGAAATA-----AAACCTCATCTAAAATGGGA---A--GAAATATTTAAT-AACCTTGACTGGAAAAC----CATTCA
gi|28678 : CAGTTTGTTATTTTACAAATCATGG---T-TCCAGCTAGGAATC-AAA-ACA-------------------ATAAATG--AT-ATATATGATTTTAGACACAAGA-CGTTTT-ATACTTTTGAAC--GATT----AAAAC-AATTATACATTA-T--TAA-TAATTCAGAATTTCT--------CAAT-TATTTTACTATTACCCAAAGTATACCAAAAAGATGGAAACACA--TTACTAAAA-CAGAGAATATA----A-T-AGA-AAC--TG----AAA-G----AA---CACCGTT-TT-TACATCAAGTGAGGAAATGTTATTCTCCTA-ATA--GAATGTTATATAAT-AT-GCAAATTCAGTT-AATTA-AT--A-AC--GA-----TAATGAAATA-----AAACCTCATCTCAAATGGGA---A--ACAATATTTAAC-AACCTTGACAGGAAAAC----CATTCA
gi|28679 : CAGTTTGTTATTTTACAAATCTTGC---T-TACAGCTAGGAATT-TAA-TCA-------------------ATAAATG--GT-ATATATGATTCTAGACACAAGA-CGTTTT-ATACTTTTGAAC--AATT----AAAAC-AATTAATCAATA-T--TAT-TAATTCAGAATTTCT--------AAAT-TATGTTATTATTACCCAAAGCATACT-AAAAGATGGAAACACA--TTATTAAAA-CAGGGAATGTA----A-T-AGA-AAC--TGAAAAAAA-A----AA---CACCTTT-AT-TACATCAAGTGAGGCAATGTTATTCTCCAA-ATA--GAATGTTATTTAAT-AT-GCAAATTCATTT-AATTA-AT--A-AC--GA-----TAATGAAATA-----AAACCTCATCTAAAATGGGA---A--GAAATATTCAAC-AACCTTGACTTGAAAAC----CATTCA
gi|28680 : CAGTTTGTTATTTTACTAATCATGG---T-TCTAGCTAGGAATT-AAA-ATATTCATTTATTAAAATTATTATAAATA--AT-ATATATGATTATAGACACAAGA-CGTTTT-ATTAGTTTAAGC--GATT----AAAAT-AATTATACAATA-T--TAG-TAATTCAGAATGTCT--------CAAT-AATTTTACTATTACCCAAAGCATACCAAAAAGATGGAAACAAA--TTATTAAAA-CAGTAAATATA----A-T-AGA-AAC--TG----AAT-A----AA---CACCTTT-AT-TACAATAGGTGAGGAAATGTAATTCTCCAA-ATA--GAATGTTATATAAT-AT-GCAAATTCAGTT-AACTA-AT--A-AC--GA-----TAATGAAATA-----AAATCACATTTAAAATGGAA---A--GAAATATTTAAC-AACCTTGACTGGAAAAC----CATTCA
gi|28681 : CAATTTATTATTTTACAAAGCATGG---C-TACAGCTAGGAATT-AAA-ACA-------------------ATAAATT--AT-ATATATGATTGTAGATACAAGA-CATTTT-ATAATTTTGAAA--AATT----AAAAC-AATTATACAATA-T--AAG-TAACTCAGAATTTCT--------AAAC-TATTTTACTATTATCCGAAGCATACCCAAATGATGGAAATAGA--TTATTAAAA-CAGAGAATATA----C-C-AGA-AAA--TG-----AA-A----AA---CACCTTT-AT-AACACTAAGTGAGAAAATACAATTCTTCAACATA---AATGTTGTATAAC-AT-ACGAATTAAATT-AATTA-----A-ACTTAA-----TAATGAATTA-----AAACCTCATCTTCAATGGGA---A--GAAATATTCAAC-AACCTCAACTGCAAAAC----TGTTCA
gi|28682 : CAGTTTGCTATTTAATAAATCATGA---T-GGCAGCAAGGAATA-AAA-AC-------------------------TG--AT-ATATATGATTCTAACCACAAAA-AGTTTT-ATACTTTTGAAA--GATT----AACAC-AATTATACCATG-T--AAA-CAACTCGGAATTGCT--------CAAT-TATTTCGCCACTACCAAAAGCATCCCAAAAAGATGGAATCAAA--TTATTGAAA-TACAGAATATA----A-T-ATA-ATT--TG----AAT-A----AA---CACCTTC-ATCTACACCAAGTGAGGAAATGCAACTCTCCAA-ATA--GAATTTTGTATAAC-AT-GCAAATTCAGTT-AATTT-AT--A-TT--GA-----TAATGAAATA-----AAATCGCATCTTAAATGGGA---A--GAAATTTTTAAC-AACCTTAACTGGAAAAC----CATTCA
gi|28683 : CAATATATTAGTTTACAAATAACGG---C-TACAGCTAGGAATT-AAA-ACA-------------------ATAAATG--AT-ATATATGATTGTAGATACAATA-CATTTT-ATAAATTTGAAA--GATT----AAAAC-AATTATACAAT--T--TAAGTAATTCCGAATTTCT--------AAAC-TA-TTTACTATTATCCGAAGCATATCCAAAAGATGGAAACAGA--TTATCAAAA-CAGAGAATA-A----A-TAAGA-AAT--TG----AAA-ACAACAA---CACCTTT-TT-TACACCAAGTGAGATAATGCAATTCTCCGA-CTA--AAATGTTATATGAC-AT-GCAAATTAAATT-AATTG-AT--A-TT--GA-----TAATGAAATA-----AAACCTCAGCTCCAGTGGGA---A--GAAATATTCATC-AACATCAACTGGAAAAC----TATT
gi|28684 : CAGTTTGTTATTTAACAAATCATGG---T-TACAGCTAGGAAAT-AAA-ACA-------------------TAAAATG--AT-GTATATAATTCTAGACACAAGA-CGTTTT-ATACTTTTGAAC--GATT----AAATC-AAATATACAATA-T--ATG-TAATTCAAATTTTCT--------CAAT-TATTCTACTATTACCCAAAGCATACCAAAAAGAAGGAAACAAA--TAATTGAAA-CAGAGAATATA----A-T-AGA-AAC--TG----AAA-A----AAACCCACCTTT-AT-TACATCAGTTGAGGAAATGTAATTCTCCAA-AAA--GAATGTTATATAAT-AT-GCAAATTCTGTTAAATTA-AT--A-AC--AA-----
gi|28685 : CAATTTACGATTCAACAAATCATTG---T-CATATCTAGGAATT-AAA-ACA-------------------TTGAATT--AT-ATATACGATTCTAGTCAAAAAA-TATTTT-ATACTTTTAAAA--GATT----AAAAC-AATTTTACAATA-T--TAA-TTATTTAGAATTTCT--------AAAC-TATTTCACTATATTCCAAAACACACTTAAAAGATGGAAACAAA--TTATAAAAA-CAGAAAATGTA----C-T-AGA-AAT--TT----AAA-AAT--AA---CACCTTT-AT-TATACCAATTGACAAAA-GTAATTTTCCAA-ATA--AAGTGTTATATAAT-TT-GCAAA-----TT-AATTA-AC--A-CT--GA-----CTATAAAATA-----AAACCCCATCTTCATTTGAA---A--AGAATATTTAGC-AACCTTAACTAGAAAATCGTACATTCA
gi|28686 : CAGTTTATTATTTTACAAATAATGG---T-TAGAAGTAGGAATT-TAA-ACA-------------------ATATATA--GT-ATATATGATTCTAGACACAAGA-CATTTT-ATACTTTTGGAA--GATA----AACAC-AAGTGTACAATA-T--AAA-CACTTCAGAAATTCT--------AAAC-TTTTTCACTATAACCAGAAGCATACCAAAAAGAGTGACACAGC--TTATTAAAA-CAGAGGATATA----
gi|28687 : CATTTTAATATTTTATTAATCATGG---T-TACAGCCAGGAATTAAAA-ACA-------------------ATAAATGACAT-ATATATGATCCTGGACACAAGA-CGTTT------------AT--CATT-------AC-AAGTATGCAATA-TGATAAGTAACTCAGCCTTTCTTAGACTTAAAAC-TATTTCACTTTTACCCAAAG-------------------TAAA--TTATTAAAA-CAAAGAATTTG----A-T-AAA-AAT--TA----ATA-A----AA---CCTCTTTCAA-CACACCAAGTGACG-AATGCAATACACCAA-GTGACGAATGCAATATTAC-A--GCAAAT
gi|28688 : TTATTTTATAAAGAATGG---TATGCAAA-AGGTATC-AAGTACA-------------------TCAAAC---AC-ATATTTGATAGTAGGCAAAAAA-CGTTTT-ATACATTT---C--AATTTGTAAAAGCTAAGTACACACT-----TAA-TAATTAAGATTTTTT--------AAAA-TATTATACTTTAATTGAAAGCATACCAAAAGTATGGAAACAAA--ACTTGAAAA-CCGACAACATAGCTGA-T-AAT-AA---TA----AAC-A----AAT--TAGC-TT-AA-TGCAACAAATTCGAAACCTCAAGAGTCCAA-ATA--AATTTTTATACAAC-AG-AC-AATTAAA---AAACA-CT--A-AC--AA-----TATT--AATATTATCAAACCCCATATTAAATGGGAATCA--GAAA---GTACG-AACATTAACTGGAA
gi|28689 : TTATTTTATAAAAAATGGCATT-CAAA---AGGTATC-AAGTACA--------------------TAAAAC--A--ACTTTTGATAGTAGACAAAAAAACATTCT-ATACTTTTCAATTTG-TT----AAAGC-AAA-ATACC-TACT--TAA-AAGTTCAGATTTTTT--------TAAAATATTATACTTTAATTGAAAGCATTCCAAAGTTATGGAAACAAA--AT-TTAAAAGCAAACAATATA----G-C-TGACAATAATG----AAG-A----AA---TGAATTT-AT-TGCAACAAATCAGAAACCTTAAATGTCCAA-ATA--AACTTTTATGTAAT-AG-ACAA------CT-AAAAA-AT--ATAC--GAAAGCATATTATAATC-----AAACCTCATATTAAATGGGA---ATTAAAAGAT---GCGAACATAAACTGGAAA
gi|28690 : -ACA-------------------ATAAATG--ATTATATATGATTCTTGACACAAGA-TGTATT-ATACTTTTGAAC--GATT----AAAAC-AACTATACAATA-T--AGG-TAATTCAGAATTTCT--------CAAT-TATGTTACTACTACCGAAAGCATACCAAAACGATGGAAACAAA--TTATTAAAA-CAAAGAATATA----A-C-AGA-AAC--TG----AAA-A----AAAA-CACCTTT-AT-TACATCAAGTGAGGAAATGTAATTCTCCAA-ATA--GAATGTTATATAAT-AT-GTAAATTCAGGA-AATTA-TT--A-AT--GA-----TAATGTAATA-----AAAC------------GGGA---A--AGAATATTTAAC-AAGCTTAACCGGAAAAC----CATTCA
gi|28691 : AGACAAAAAA-CATTCT-ATACTTTTCAATTTG-TT----AAAGCTAA--ATACTTTC-T--TTA-AAAATCAGA-TTTTT--------TAAA-TAATATACTTTAATTGAAAGCATTCCAAAGGTATGGAAACAAAAATTA--AAAA-CAAACAATA---------------A---TG----AAC-A----AA---TAGATTT-AT-TGCAATAAATCAGAAACCTCAAACGTCCAA-ATA--AACTTTTATATAAT-AG-ACAA-CTAAG---AATCATACGAA-AC--AA-----TATTATAATC-----AAACCTCATATTAAATGGGAATTA--GAAG-A--TAGG-AACATTAACTGGAAA
gi|28692 : TA-T--AAG-TAATTCAGAATTTCT--------AAAC-TATTTCATTATAAGTCAAAGCATACCAAAA-GATGGAAACACA--TTA-TAAAA-CAGAGAATAGA----C-T-AGA-AAT--TG----AAATA----AA---CACCGTT-TT-TTCATCAAGTAAGAAAATGTAATTCTCCAA-ATA--GAATGTTATATAGTAAT-GT-AATTC
gi|28693 : ATCTA----ACT-AGA-AAT--TA----AAA-AAAA-AA---CACCTTT-AT-TACACCAATTGAGAAAATACAATTCTCCAA-ATA--AAATGTTATATAAC-AT-GCAAATTAAATT-AGTAA-AT--A-TT--GA-----CAATAAAATA-----AAGCCTCAGTTTCAATGGGA---A--GAAATATTTAAC-AACCTTCACCGGAAAAT----CATTTA
gi|28694 : TGTAATTCTCCAA-ATA--GAATGTTATATAGT-ATTGCAAATTCAGAC-AACTA-AT--A-TT--AA-----TAATGAAATA-----AAACCTCATATTCAATGGGA---A--GAAACA-TTAAC-AACCTTAAACGGGAAAC----TATTCA
blockSeqs : CAT A A T TTCATTTATTAAAATTATTA GAC T A . TTT TGTA T T C GAT G TAGACTTAA AA A AA G GCTGA A C TAA AAAA T CAAC ACC C C T C AC A T T A T GA T TT AAGCA TTATC C CA ATC TT G CGTA
blockSeqs : . . . T A G . . . TTT . T T . T G C T A . . AC . . C . . AAA AA . . T . . . . T . . . . . . . C AA ATT . . .
blockSeqs : . . . . A G . . . C . . T . T . A T A . . A . . C . . AT T . . A . . . . T . . . . . . . T AA . . . .
blockSeqs : . . . . A A . . . C . . T . T . C T T . . A . . C . . . . . . C . . . . T . . . . . . . C TC . . . .
blockSeqs : . . . . A T . . . C . . T . A . A C A . . A . . A . . . . . . C . . . . T . . . . . . . C TA . . . .
blockSeqs : . . . . T G . . . A . . T . A . C T A . . C . . T . . . . . . C . . . . T . . . . . . . C CC . . . .
blockSeqs : . . . . T G . . . A . . A . T . A C A . . A . . T . . . . . . T . . . . T . . . . . . . C TC . . . .
blockSeqs : . . . . A G . . . A . . T . A . C T A . . A . . C . . . . . . C . . . . T . . . . . . . A TA . . . .
blockSeqs : . . . . A T . . . C . . G . T . A C A . . A . . T . . . . . . C . . . . C . . . . . . . A TA . . . .
blockSeqs : . . . . T A . . . A . . G . A . A C G . . C . . T . . . . . . A . . . . G . . . . . . . A TA . . . .
blockSeqs : . . . . A C . . . A . . G . T . A C T . . A . . C . . . . . . A . . . . T . . . . . . . T TC . . .
blockSeqs : . . . . . G . . . T . . A . T . T A C . . G . . T . . . . . . T . . . . A . . . . . . . A TC . . .
blockSeqs : . . . . . . C . . C . A . C T G . . A . . T . . . . . . A . . . . . . . . . . . . . . . . .
blockSeqs : . . C . . . . T . T A . . . C . . . . . . . . . T . . . . . . . . . . .
blockSeqs : . A . A C . . . . . . . . . . . . . C . . . .
blockSeqs : . . . .
blockSeqCons :
originalCons : CAGTTTGTTATTTTACAAATCATGG---T-TACAGCTAGGAATT-AAA-ACA-------------------ATAAATG--AT-ATATATGATTCTAGACACAAGA-CGTTTT-ATACTTTTGAAC--GATT----AAAAC-AATTATACAATA-T--TAA-TAATTCAGAATTTCT--------NAAC-TATTTTACTATTACCCAAAGCATACCAAAAAGATGGAAACAAA--TTATTAAAA-CAGAGAATATA----A-T-AGA-AAC--TG----AAA-A----AA---CACCTTT-AT-TACACCAAGTGAGGAAATGTAATTCTCCAA-ATA--GAATGTTATATAAT-AT-GCAAATTCAGTT-AATTA-AT--A-AC--GA-----TAATGAAATA-----AAACCTCATCTTAAATGGGA---A--GAAATATTTAAC-AACCTTAACTGGAAAAC----CATTCA
finalCons : CAGTTTGTTATTTTACAAATCATGG---T-TACAGCTAGGAATT-AAA-ACA-------------------ATAAATG--AT-ATATATGATTCTAGACACAAGA-CGTTTT-ATACTTTTGAAC--GATT----AAAAC-AATTATACAATA-T--TAA-TAATTCAGAATTTCT--------NAAC-TATTTTACTATTACCCAAAGCATACCAAAAAGATGGAAACAAA--TTATTAAAA-CAGAGAATATA----A-T-AGA-AAC--TG----AAA-A----AA---CACCTTT-AT-TACACCAAGTGAGGAAATGTAATTCTCCAA-ATA--GAATGTTATATAAT-AT-GCAAATTCAGTT-AATTA-AT--A-AC--GA-----TAATGAAATA-----AAACCTCATCTTAAATGGGA---A--GAAATATTTAAC-AACCTTAACTGGAAAAC----CATTCA
Alignments
lowQualScore : 22222222222222222222 111111111 1111 111 111
lowQualScore : 555 3 3 5 33333333333333333333 555 2 0 2 2 0 888 5555 5 3 2 444 5 0 000000000 44 0 0 2 33 2 555555 2 2 888 5555 2 3333 000 2 2 2 2 33 2 2 0 1 2 2 33 2 33 66666 77777 1 11 000 33 0 2 7777
lowQualScore : ... . . . .................... ... . . . . . ... .... . . . ... . . ......... .. . . . .. . ...... . . ... .... . .... ... . . . . .. . . . . . . .. . .. ..... ..... . .. ... .. . . ....
lowQualScore : 444 1 1 7 99999999999999999999 111 9 1 7 7 5 999 7777 3 5 5 222 0 4 111111111 22 8 2 2 44 5 444444 5 5 222 3333 5 1111 333 5 5 2 4 22 4 4 9 9 7 7 77 7 77 77777 11111 2 77 000 99 8 9 7777
consensus : CAGTTTGTTATTTTACAAATCATGG---T-TACAGCTAGGAATT-AAA-ACA-------------------ATAAATG--AT-ATATATGATTCTAGACACAAGA-CGTTTT-ATACTTTTGAAC--GATT----AAAAC-AATTATACAATA-T--TAA-TAATTCAGAATTTCT--------NAAC-TATTTTACTATTACCCAAAGCATACCAAAAAGATGGAAACAAA--TTATTAAAA-CAGAGAATATA----A-T-AGA-AAC--TG----AAA-A----AA---CACCTTT-AT-TACACCAAGTGAGGAAATGTAATTCTCCAA-ATA--GAATGTTATATAAT-AT-GCAAATTCAGTT-AATTA-AT--A-AC--GA-----TAATGAAATA-----AAACCTCATCTTAAATGGGA---A--GAAATATTTAAC-AACCTTAACTGGAAAAC----CATTCA
Reference ( family-861 ) : CAGTTTGTTATTTTACAAATCATGG---T-TACAGCTAGGAATT-AAA-ACA-------------------ATAAATG--AT-ATATATGATTCTAGACACAAGA-CGTTTT-ATACTTTTGAAC--GATT----AAAAC-AATTATACAATA-T--TAA-TAATTCAGAATTTCT--------NAAC-TATTTTACTATTACCCAAAGCATACCAAAAAGATGGAAACAAA--TTATTAAAA-CAGAGAATATA----A-T-AGA-AAC--TG----AAA-A----AA---CACCTTT-AT-TACACCAAGTGAGGAAATGTAATTCTCCAA-ATA--GAATGTTATATAAT-AT-GCAAATTCAGTT-AATTA-AT--A-AC--GA-----TAATGAAATA-----AAACCTCATCTTAAATGGGA---A--GAAATATTTAAC-AACCTTAACTGGAAAAC----CATTCA
gi|28677 : CAGTTTGTTATTTTACAAATCATGG---T-TACAGCTAGGAATC-AAA-ACG-------------------ATAAATG--AT-ATATATGATTCTAGACACAAGA-CGTTTTCATACTTTTGAAC--GATT----AAAAC-AATTATACAATA-T--TAA-TAATTCAGAATTTCT--------CAAT-TATTTTACTATTACTCGAAGCATATAAAAAAAATGGAAACACA--TTATTTAAA-CAGAGAATATA----A-T-AGA-AAC--TG----AAA-A----AA---CACCATT-AT-AACATCAAGTGAGGAAATGTAATTCTCCTA-ATA--GAATGTTATATAAT-AT-GCAAATTCAGTT-AATTA-AT--A-AC--GA-----TAATGAAATA-----AAACCTCATCTAAAATGGGA---A--GAAATATTTAAT-AACCTTGACTGGAAAAC----CATTCA
gi|28678 : CAGTTTGTTATTTTACAAATCATGG---T-TCCAGCTAGGAATC-AAA-ACA-------------------ATAAATG--AT-ATATATGATTTTAGACACAAGA-CGTTTT-ATACTTTTGAAC--GATT----AAAAC-AATTATACATTA-T--TAA-TAATTCAGAATTTCT--------CAAT-TATTTTACTATTACCCAAAGTATACCAAAAAGATGGAAACACA--TTACTAAAA-CAGAGAATATA----A-T-AGA-AAC--TG----AAA-G----AA---CACCGTT-TT-TACATCAAGTGAGGAAATGTTATTCTCCTA-ATA--GAATGTTATATAAT-AT-GCAAATTCAGTT-AATTA-AT--A-AC--GA-----TAATGAAATA-----AAACCTCATCTCAAATGGGA---A--ACAATATTTAAC-AACCTTGACAGGAAAAC----CATTCA
gi|28679 : CAGTTTGTTATTTTACAAATCTTGC---T-TACAGCTAGGAATT-TAA-TCA-------------------ATAAATG--GT-ATATATGATTCTAGACACAAGA-CGTTTT-ATACTTTTGAAC--AATT----AAAAC-AATTAATCAATA-T--TAT-TAATTCAGAATTTCT--------AAAT-TATGTTATTATTACCCAAAGCATACT-AAAAGATGGAAACACA--TTATTAAAA-CAGGGAATGTA----A-T-AGA-AAC--TGAAAAAAA-A----AA---CACCTTT-AT-TACATCAAGTGAGGCAATGTTATTCTCCAA-ATA--GAATGTTATTTAAT-AT-GCAAATTCATTT-AATTA-AT--A-AC--GA-----TAATGAAATA-----AAACCTCATCTAAAATGGGA---A--GAAATATTCAAC-AACCTTGACTTGAAAAC----CATTCA
gi|28680 : CAGTTTGTTATTTTACTAATCATGG---T-TCTAGCTAGGAATT-AAA-ATATTCATTTATTAAAATTATTATAAATA--AT-ATATATGATTATAGACACAAGA-CGTTTT-ATTAGTTTAAGC--GATT----AAAAT-AATTATACAATA-T--TAG-TAATTCAGAATGTCT--------CAAT-AATTTTACTATTACCCAAAGCATACCAAAAAGATGGAAACAAA--TTATTAAAA-CAGTAAATATA----A-T-AGA-AAC--TG----AAT-A----AA---CACCTTT-AT-TACAATAGGTGAGGAAATGTAATTCTCCAA-ATA--GAATGTTATATAAT-AT-GCAAATTCAGTT-AACTA-AT--A-AC--GA-----TAATGAAATA-----AAATCACATTTAAAATGGAA---A--GAAATATTTAAC-AACCTTGACTGGAAAAC----CATTCA
gi|28681 : CAATTTATTATTTTACAAAGCATGG---C-TACAGCTAGGAATT-AAA-ACA-------------------ATAAATT--AT-ATATATGATTGTAGATACAAGA-CATTTT-ATAATTTTGAAA--AATT----AAAAC-AATTATACAATA-T--AAG-TAACTCAGAATTTCT--------AAAC-TATTTTACTATTATCCGAAGCATACCCAAATGATGGAAATAGA--TTATTAAAA-CAGAGAATATA----C-C-AGA-AAA--TG-----AA-A----AA---CACCTTT-AT-AACACTAAGTGAGAAAATACAATTCTTCAACATA---AATGTTGTATAAC-AT-ACGAATTAAATT-AATTA-----A-ACTTAA-----TAATGAATTA-----AAACCTCATCTTCAATGGGA---A--GAAATATTCAAC-AACCTCAACTGCAAAAC----TGTTCA
gi|28682 : CAGTTTGCTATTTAATAAATCATGA---T-GGCAGCAAGGAATA-AAA-AC-------------------------TG--AT-ATATATGATTCTAACCACAAAA-AGTTTT-ATACTTTTGAAA--GATT----AACAC-AATTATACCATG-T--AAA-CAACTCGGAATTGCT--------CAAT-TATTTCGCCACTACCAAAAGCATCCCAAAAAGATGGAATCAAA--TTATTGAAA-TACAGAATATA----A-T-ATA-ATT--TG----AAT-A----AA---CACCTTC-ATCTACACCAAGTGAGGAAATGCAACTCTCCAA-ATA--GAATTTTGTATAAC-AT-GCAAATTCAGTT-AATTT-AT--A-TT--GA-----TAATGAAATA-----AAATCGCATCTTAAATGGGA---A--GAAATTTTTAAC-AACCTTAACTGGAAAAC----CATTCA
gi|28683 : CAATATATTAGTTTACAAATAACGG---C-TACAGCTAGGAATT-AAA-ACA-------------------ATAAATG--AT-ATATATGATTGTAGATACAATA-CATTTT-ATAAATTTGAAA--GATT----AAAAC-AATTATACAAT--T--TAAGTAATTCCGAATTTCT--------AAAC-TA-TTTACTATTATCCGAAGCATATCCAAAAGATGGAAACAGA--TTATCAAAA-CAGAGAATA-A----A-TAAGA-AAT--TG----AAA-ACAACAA---CACCTTT-TT-TACACCAAGTGAGATAATGCAATTCTCCGA-CTA--AAATGTTATATGAC-AT-GCAAATTAAATT-AATTG-AT--A-TT--GA-----TAATGAAATA-----AAACCTCAGCTCCAGTGGGA---A--GAAATATTCATC-AACATCAACTGGAAAAC----TATT
gi|28684 : CAGTTTGTTATTTAACAAATCATGG---T-TACAGCTAGGAAAT-AAA-ACA-------------------TAAAATG--AT-GTATATAATTCTAGACACAAGA-CGTTTT-ATACTTTTGAAC--GATT----AAATC-AAATATACAATA-T--ATG-TAATTCAAATTTTCT--------CAAT-TATTCTACTATTACCCAAAGCATACCAAAAAGAAGGAAACAAA--TAATTGAAA-CAGAGAATATA----A-T-AGA-AAC--TG----AAA-A----AAACCCACCTTT-AT-TACATCAGTTGAGGAAATGTAATTCTCCAA-AAA--GAATGTTATATAAT-AT-GCAAATTCTGTTAAATTA-AT--A-AC--AA-----
gi|28685 : CAATTTACGATTCAACAAATCATTG---T-CATATCTAGGAATT-AAA-ACA-------------------TTGAATT--AT-ATATACGATTCTAGTCAAAAAA-TATTTT-ATACTTTTAAAA--GATT----AAAAC-AATTTTACAATA-T--TAA-TTATTTAGAATTTCT--------AAAC-TATTTCACTATATTCCAAAACACACTTAAAAGATGGAAACAAA--TTATAAAAA-CAGAAAATGTA----C-T-AGA-AAT--TT----AAA-AAT--AA---CACCTTT-AT-TATACCAATTGACAAAA-GTAATTTTCCAA-ATA--AAGTGTTATATAAT-TT-GCAAA-----TT-AATTA-AC--A-CT--GA-----CTATAAAATA-----AAACCCCATCTTCATTTGAA---A--AGAATATTTAGC-AACCTTAACTAGAAAATCGTACATTCA
gi|28686 : CAGTTTATTATTTTACAAATAATGG---T-TAGAAGTAGGAATT-TAA-ACA-------------------ATATATA--GT-ATATATGATTCTAGACACAAGA-CATTTT-ATACTTTTGGAA--GATA----AACAC-AAGTGTACAATA-T--AAA-CACTTCAGAAATTCT--------AAAC-TTTTTCACTATAACCAGAAGCATACCAAAAAGAGTGACACAGC--TTATTAAAA-CAGAGGATATA----
gi|28687 : CATTTTAATATTTTATTAATCATGG---T-TACAGCCAGGAATTAAAA-ACA-------------------ATAAATGACAT-ATATATGATCCTGGACACAAGA-CGTTT------------AT--CATT-------AC-AAGTATGCAATA-TGATAAGTAACTCAGCCTTTCTTAGACTTAAAAC-TATTTCACTTTTACCCAAAG-------------------TAAA--TTATTAAAA-CAAAGAATTTG----A-T-AAA-AAT--TA----ATA-A----AA---CCTCTTTCAA-CACACCAAGTGACG-AATGCAATACACCAA-GTGACGAATGCAATATTAC-A--GCAAAT
gi|28688 : TTATTTTATAAAGAATGG---TATGCAAA-AGGTATC-AAGTACA-------------------TCAAAC---AC-ATATTTGATAGTAGGCAAAAAA-CGTTTT-ATACATTT---C--AATTTGTAAAAGCTAAGTACACACT-----TAA-TAATTAAGATTTTTT--------AAAA-TATTATACTTTAATTGAAAGCATACCAAAAGTATGGAAACAAA--ACTTGAAAA-CCGACAACATAGCTGA-T-AAT-AA---TA----AAC-A----AAT--TAGC-TT-AA-TGCAACAAATTCGAAACCTCAAGAGTCCAA-ATA--AATTTTTATACAAC-AG-AC-AATTAAA---AAACA-CT--A-AC--AA-----TATT--AATATTATCAAACCCCATATTAAATGGGAATCA--GAAA---GTACG-AACATTAACTGGAA
gi|28689 : TTATTTTATAAAAAATGGCATT-CAAA---AGGTATC-AAGTACA--------------------TAAAAC--A--ACTTTTGATAGTAGACAAAAAAACATTCT-ATACTTTTCAATTTG-TT----AAAGC-AAA-ATACC-TACT--TAA-AAGTTCAGATTTTTT--------TAAAATATTATACTTTAATTGAAAGCATTCCAAAGTTATGGAAACAAA--AT-TTAAAAGCAAACAATATA----G-C-TGACAATAATG----AAG-A----AA---TGAATTT-AT-TGCAACAAATCAGAAACCTTAAATGTCCAA-ATA--AACTTTTATGTAAT-AG-ACAA------CT-AAAAA-AT--ATAC--GAAAGCATATTATAATC-----AAACCTCATATTAAATGGGA---ATTAAAAGAT---GCGAACATAAACTGGAAA
gi|28690 : -ACA-------------------ATAAATG--ATTATATATGATTCTTGACACAAGA-TGTATT-ATACTTTTGAAC--GATT----AAAAC-AACTATACAATA-T--AGG-TAATTCAGAATTTCT--------CAAT-TATGTTACTACTACCGAAAGCATACCAAAACGATGGAAACAAA--TTATTAAAA-CAAAGAATATA----A-C-AGA-AAC--TG----AAA-A----AAAA-CACCTTT-AT-TACATCAAGTGAGGAAATGTAATTCTCCAA-ATA--GAATGTTATATAAT-AT-GTAAATTCAGGA-AATTA-TT--A-AT--GA-----TAATGTAATA-----AAAC------------GGGA---A--AGAATATTTAAC-AAGCTTAACCGGAAAAC----CATTCA
gi|28691 : AGACAAAAAA-CATTCT-ATACTTTTCAATTTG-TT----AAAGCTAA--ATACTTTC-T--TTA-AAAATCAGA-TTTTT--------TAAA-TAATATACTTTAATTGAAAGCATTCCAAAGGTATGGAAACAAAAATTA--AAAA-CAAACAATA---------------A---TG----AAC-A----AA---TAGATTT-AT-TGCAATAAATCAGAAACCTCAAACGTCCAA-ATA--AACTTTTATATAAT-AG-ACAA-CTAAG---AATCATACGAA-AC--AA-----TATTATAATC-----AAACCTCATATTAAATGGGAATTA--GAAG-A--TAGG-AACATTAACTGGAAA
gi|28692 : TA-T--AAG-TAATTCAGAATTTCT--------AAAC-TATTTCATTATAAGTCAAAGCATACCAAAA-GATGGAAACACA--TTA-TAAAA-CAGAGAATAGA----C-T-AGA-AAT--TG----AAATA----AA---CACCGTT-TT-TTCATCAAGTAAGAAAATGTAATTCTCCAA-ATA--GAATGTTATATAGTAAT-GT-AATTC
gi|28693 : ATCTA----ACT-AGA-AAT--TA----AAA-AAAA-AA---CACCTTT-AT-TACACCAATTGAGAAAATACAATTCTCCAA-ATA--AAATGTTATATAAC-AT-GCAAATTAAATT-AGTAA-AT--A-TT--GA-----CAATAAAATA-----AAGCCTCAGTTTCAATGGGA---A--GAAATATTTAAC-AACCTTCACCGGAAAAT----CATTTA
gi|28694 : TGTAATTCTCCAA-ATA--GAATGTTATATAGT-ATTGCAAATTCAGAC-AACTA-AT--A-TT--AA-----TAATGAAATA-----AAACCTCATATTCAATGGGA---A--GAAACA-TTAAC-AACCTTAAACGGGAAAC----TATTCA