lowQualScore : 1 2 2 11 33 333 8888 2 888888888 55555 5 88
lowQualScore : . . . .. .. ... .... . ......... ..... . ..
lowQualScore : 0 7 5 99 11 999 6666 2 999999999 66666 8 11
consensus : TCTTTTA-TTCCCTG-AGTTTGCTTTGAAAAG--AA---AATAA----A-TGATT---------TAT-----TTTCGTTTGAGCAAAGCGA-ATTAGAAAATA
Reference ( gi|133867 ) : TCTTTTA-TTCCCTG-AGTTTACTTTGAAAAG--AA---AATAA----A-TGATT---------TAT-----TTTCATTTGAGCAAAGCGA-GTTAGAAAATA
gi|133871 : TCTTTAA-TTCCCTG-AGTTTACTTTGAAAAG--AA---CATAA----A-TGACT---------TAA-----TTTCGTTTGAGCAAAGCGA-ATTAGAAAATA
gi|133868 : TCTTTTA-TTCCCTG-AATTTACTTTGAAAAG--AA---AATAATTT-ATTTATT---------TAT-----TTTAGTTTGAGCAAAGCGA-ATTAGAAAATA
gi|133870 : TCTTTAA-TTCCCTG-AGTTTGCTTTGAAAAG--AA---AATAA----A-TGATT---------TGT-----TTTCGTTTGAGCAAAGC
gi|133869 : TCTTTAA-TTCCCTG-AGTTTGCTTTGAAAAG--AA---AATAA----A-TGATT---------TGT-----TTTCGTTTGAGCAAAGCctaaaagtaatta
gi|133872 : TCTCTTA-ATTCCTACAGATTGTTTTGAAAAG--AA---AACAA----A-TGATT---------TGT-----TTTCGTTTGAGCAAAGCGA-ATTAGAAAATActaaaagtaatta
gi|133873 : TCTTTAA-TTCCCTG-ACTTTGCTTTGAAAAT--AA---AATAA----A-TGATT---------TGT-----TTTTGTTTGG--AAAGCGA-ATTAGAAAATA
gi|133874 : TCTTTTA-TTTTTTG-ATACTATTTTGAAAAG--AA---AAGAA----G-TGAAT---------CAT-----TTTCGTTTGAGCAAAATTA-ATTAGAAA
gi|133876 : TCTTTTA-TTTCCTG-AAAATACTTTGAAAAG--AA---AAGGA----A-----T---------TAT-----TTTTGTTTG---AAAATAA-AATAGAAAtca
gi|133877 : CTTTAA-TGTCCTA-CATTTAATTTGAAAAATAAATGCAATAA----A-TGGTT---------AAT-----TCTTGTTTGAGCAAAACGA-ATTTGAAAt
gi|133878 : TTTTA-TTTTCTG-ATACTATTTTGAAAAG--AA---AAGAA----G-TGATT---------TAT-----TTTCGTTTGAGCAAAATTA-ATTAGAAAt
gi|133879 : TTTTAATTCCCTG-AGTTTGCTTTGAAAAA--TA---AATAA----A-TGATTAAACAATAATAT-----TTTCGTT-----AAAGGGA-ATTGGAAAATAtca
gi|133880 : TTTA-TTTCCTG-AATGTGATTTGAAAAG--AA---AAAAACTATA-TGACT---------TAT-----TTTCGTTTGAGCAAAGCCA-TTTAGAAA
gi|133881 : TTA-TTCACAG-AATTTACTTTGAAGAT--AA---AATAA----A-TGAAT---------CAT-----TTTCACTTGAGCGAAGTGA-ATTA
gi|133882 : A-TTCCCTG-AGTTTACTTTGAAAA---AC---CCTAA----A-TGATT---------TAT-----TTTCGTTTGAGC-AGGTGA-ATTAGAAA
gi|133875 : -TTCCCAC-AGACTGCTT--GAAAG--AA---AATAA----A-TTATT---------TGTGTTTTTTTCGTTTGAACAAAGCGA-ATTAGAAAATA
gi|133883 : tctctatagCTG-ACGTTGCTTTGAAAAG--AA---AATGA----A-TTATT---------TAT-----TTTCGTTCGAGCAATACGA-ATTAGAAAATA
gi|133884 : TTTGAAAAG--AA---AATGA----A-TGGTT---------CAT-----TTTCGTTTGAGCAAAACGA-ATTAGAAA
gi|133883 : AACG--AA---AATAA----A-TAATT---------CAT-----TTTCTTTT---CAAAGCAACGTCAGct
Alignments
lowQualScore : 0 2 2 00 33 333 8888 2 888888888 55555
lowQualScore : . . . .. .. ... .... . ......... .....
lowQualScore : 3 5 4 66 11 999 6666 2 999999999 66666
consensus : TCTTTTA-TTCCCTG-AGTTTGCTTTGAAAAG--AA---AATAA----A-TGATT---------TAT-----TTTCGTTTGAGCAAAGCGAATTAGAAAATA
Reference ( family-857 ) : TCTTTTA-TTCCCTG-AGTTTGCTTTGAAAAG--AA---AATAA----A-TGATT---------TAT-----TTTCGTTTGAGCAAAGCGAATTAGAAAATA
gi|133867 : TCTTTTA-TTCCCTG-AGTTTACTTTGAAAAG--AA---AATAA----A-TGATT---------TAT-----TTTCATTTGAGCAAAGCGAGTTAGAAAATA
gi|133868 : TCTTTTA-TTCCCTG-AATTTACTTTGAAAAG--AA---AATAATTT-ATTTATT---------TAT-----TTTAGTTTGAGCAAAGCGAATTAGAAAATA
gi|133869 : TCTTTAA-TTCCCTG-AGTTTGCTTTGAAAAG--AA---AATAA----A-TGATT---------TGT-----TTTCGTTTGAGCAAAGC
gi|133870 : TCTTTAA-TTCCCTG-AGTTTGCTTTGAAAAG--AA---AATAA----A-TGATT---------TGT-----TTTCGTTTGAGCAAAGCctaaaagtaatta
gi|133871 : TCTTTAA-TTCCCTG-AGTTTACTTTGAAAAG--AA---CATAA----A-TGACT---------TAA-----TTTCGTTTGAGCAAAGCGAATTAGAAAATActaaaagtaatta
gi|133872 : TCTCTTA-ATTCCTACAGATTGTTTTGAAAAG--AA---AACAA----A-TGATT---------TGT-----TTTCGTTTGAGCAAAGCGAATTAGAAAATA
gi|133873 : TCTTTAA-TTCCCTG-ACTTTGCTTTGAAAAT--AA---AATAA----A-TGATT---------TGT-----TTTTGTTTGG--AAAGCGAATTAGAAAATA
gi|133874 : TCTTTTA-TTTTTTG-ATACTATTTTGAAAAG--AA---AAGAA----G-TGAAT---------CAT-----TTTCGTTTGAGCAAAATTAATTAGAAA
gi|133875 : -TTCCCAC-AGACTGCTT--GAAAG--AA---AATAA----A-TTATT---------TGTGTTTTTTTCGTTTGAACAAAGCGAATTAGAAAATAtca
gi|133876 : tctctatagTCTTTTA-TTTCCTG-AAAATACTTTGAAAAG--AA---AAGGA----A-----T---------TAT-----TTTTGTTTG---AAAATAAAATAGAAA
gi|133877 : CTTTAA-TGTCCTA-CATTTAATTTGAAAAATAAATGCAATAA----A-TGGTT---------AAT-----TCTTGTTTGAGCAAAACGAATTTGAAAt
gi|133878 : TTTTA-TTTTCTG-ATACTATTTTGAAAAG--AA---AAGAA----G-TGATT---------TAT-----TTTCGTTTGAGCAAAATTAATTAGAAAt
gi|133879 : TTTTAATTCCCTG-AGTTTGCTTTGAAAAA--TA---AATAA----A-TGATTAAACAATAATAT-----TTTCGTT-----AAAGGGAATTGGAAAATAtca
gi|133880 : TTTA-TTTCCTG-AATGTGATTTGAAAAG--AA---AAAAACTATA-TGACT---------TAT-----TTTCGTTTGAGCAAAGCCATTTAGAAA
gi|133881 : TTA-TTCACAG-AATTTACTTTGAAGAT--AA---AATAA----A-TGAAT---------CAT-----TTTCACTTGAGCGAAGTGAATTA
gi|133882 : A-TTCCCTG-AGTTTACTTTGAAAA---AC---CCTAA----A-TGATT---------TAT-----TTTCGTTTGAGC-AGGTGAATTAGAAA
gi|133883 : CTG-ACGTTGCTTTGAAAAG--AA---AATGA----A-TTATT---------TAT-----TTTCGTTCGAGCAATACGAATTAGAAAATA
gi|133884 : TTTGAAAAG--AA---AATGA----A-TGGTT---------CAT-----TTTCGTTTGAGCAAAACGAATTAGAAA
Alignments
lowQualScore : 0 2 2 00 33 333 8888 2 888888888 55555
lowQualScore : . . . .. .. ... .... . ......... .....
lowQualScore : 3 5 4 66 11 999 6666 2 999999999 66666
consensus : TCTTTTA-TTCCCTG-AGTTTGCTTTGAAAAG--AA---AATAA----A-TGATT---------TAT-----TTTCGTTTGAGCAAAGCGAATTAGAAAATA
Reference ( family-857 ) : TCTTTTA-TTCCCTG-AGTTTGCTTTGAAAAG--AA---AATAA----A-TGATT---------TAT-----TTTCGTTTGAGCAAAGCGAATTAGAAAATA
gi|133867 : TCTTTTA-TTCCCTG-AGTTTACTTTGAAAAG--AA---AATAA----A-TGATT---------TAT-----TTTCATTTGAGCAAAGCGAGTTAGAAAATA
gi|133868 : TCTTTTA-TTCCCTG-AATTTACTTTGAAAAG--AA---AATAATTT-ATTTATT---------TAT-----TTTAGTTTGAGCAAAGCGAATTAGAAAATA
gi|133869 : TCTTTAA-TTCCCTG-AGTTTGCTTTGAAAAG--AA---AATAA----A-TGATT---------TGT-----TTTCGTTTGAGCAAAGC
gi|133870 : TCTTTAA-TTCCCTG-AGTTTGCTTTGAAAAG--AA---AATAA----A-TGATT---------TGT-----TTTCGTTTGAGCAAAGCctaaaagtaatta
gi|133871 : TCTTTAA-TTCCCTG-AGTTTACTTTGAAAAG--AA---CATAA----A-TGACT---------TAA-----TTTCGTTTGAGCAAAGCGAATTAGAAAATActaaaagtaatta
gi|133872 : TCTCTTA-ATTCCTACAGATTGTTTTGAAAAG--AA---AACAA----A-TGATT---------TGT-----TTTCGTTTGAGCAAAGCGAATTAGAAAATA
gi|133873 : TCTTTAA-TTCCCTG-ACTTTGCTTTGAAAAT--AA---AATAA----A-TGATT---------TGT-----TTTTGTTTGG--AAAGCGAATTAGAAAATA
gi|133874 : TCTTTTA-TTTTTTG-ATACTATTTTGAAAAG--AA---AAGAA----G-TGAAT---------CAT-----TTTCGTTTGAGCAAAATTAATTAGAAA
gi|133875 : -TTCCCAC-AGACTGCTT--GAAAG--AA---AATAA----A-TTATT---------TGTGTTTTTTTCGTTTGAACAAAGCGAATTAGAAAATAtca
gi|133876 : tctctatagTCTTTTA-TTTCCTG-AAAATACTTTGAAAAG--AA---AAGGA----A-----T---------TAT-----TTTTGTTTG---AAAATAAAATAGAAA
gi|133877 : CTTTAA-TGTCCTA-CATTTAATTTGAAAAATAAATGCAATAA----A-TGGTT---------AAT-----TCTTGTTTGAGCAAAACGAATTTGAAAt
gi|133878 : TTTTA-TTTTCTG-ATACTATTTTGAAAAG--AA---AAGAA----G-TGATT---------TAT-----TTTCGTTTGAGCAAAATTAATTAGAAAt
gi|133879 : TTTTAATTCCCTG-AGTTTGCTTTGAAAAA--TA---AATAA----A-TGATTAAACAATAATAT-----TTTCGTT-----AAAGGGAATTGGAAAATAtca
gi|133880 : TTTA-TTTCCTG-AATGTGATTTGAAAAG--AA---AAAAACTATA-TGACT---------TAT-----TTTCGTTTGAGCAAAGCCATTTAGAAA
gi|133881 : TTA-TTCACAG-AATTTACTTTGAAGAT--AA---AATAA----A-TGAAT---------CAT-----TTTCACTTGAGCGAAGTGAATTA
gi|133882 : A-TTCCCTG-AGTTTACTTTGAAAA---AC---CCTAA----A-TGATT---------TAT-----TTTCGTTTGAGC-AGGTGAATTAGAAA
gi|133883 : CTG-ACGTTGCTTTGAAAAG--AA---AATGA----A-TTATT---------TAT-----TTTCGTTCGAGCAATACGAATTAGAAAATA
gi|133884 : TTTGAAAAG--AA---AATGA----A-TGGTT---------CAT-----TTTCGTTTGAGCAAAACGAATTAGAAA
blockSeqs : A C TA TGC CTAT T AAACAATAA GTTTT
blockSeqs : . . . . TTT . . .
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blockSeqs : . . . . . .
blockSeqCons :
originalCons : TCTTTTA-TTCCCTG-AGTTTGCTTTGAAAAG--AA---AATAA----A-TGATT---------TAT-----TTTCGTTTGAGCAAAGCGAATTAGAAAATA
finalCons : TCTTTTA-TTCCCTG-AGTTTGCTTTGAAAAG--AA---AATAA----A-TGATT---------TAT-----TTTCGTTTGAGCAAAGCGAATTAGAAAATA
Alignments
lowQualScore : 0 2 2 00 33 333 8888 2 888888888 55555
lowQualScore : . . . .. .. ... .... . ......... .....
lowQualScore : 3 5 4 66 11 999 6666 2 999999999 66666
consensus : TCTTTTA-TTCCCTG-AGTTTGCTTTGAAAAG--AA---AATAA----A-TGATT---------TAT-----TTTCGTTTGAGCAAAGCGAATTAGAAAATA
Reference ( family-857 ) : TCTTTTA-TTCCCTG-AGTTTGCTTTGAAAAG--AA---AATAA----A-TGATT---------TAT-----TTTCGTTTGAGCAAAGCGAATTAGAAAATA
gi|133867 : TCTTTTA-TTCCCTG-AGTTTACTTTGAAAAG--AA---AATAA----A-TGATT---------TAT-----TTTCATTTGAGCAAAGCGAGTTAGAAAATA
gi|133868 : TCTTTTA-TTCCCTG-AATTTACTTTGAAAAG--AA---AATAATTT-ATTTATT---------TAT-----TTTAGTTTGAGCAAAGCGAATTAGAAAATA
gi|133869 : TCTTTAA-TTCCCTG-AGTTTGCTTTGAAAAG--AA---AATAA----A-TGATT---------TGT-----TTTCGTTTGAGCAAAGC
gi|133870 : TCTTTAA-TTCCCTG-AGTTTGCTTTGAAAAG--AA---AATAA----A-TGATT---------TGT-----TTTCGTTTGAGCAAAGCctaaaagtaatta
gi|133871 : TCTTTAA-TTCCCTG-AGTTTACTTTGAAAAG--AA---CATAA----A-TGACT---------TAA-----TTTCGTTTGAGCAAAGCGAATTAGAAAATActaaaagtaatta
gi|133872 : TCTCTTA-ATTCCTACAGATTGTTTTGAAAAG--AA---AACAA----A-TGATT---------TGT-----TTTCGTTTGAGCAAAGCGAATTAGAAAATA
gi|133873 : TCTTTAA-TTCCCTG-ACTTTGCTTTGAAAAT--AA---AATAA----A-TGATT---------TGT-----TTTTGTTTGG--AAAGCGAATTAGAAAATA
gi|133874 : TCTTTTA-TTTTTTG-ATACTATTTTGAAAAG--AA---AAGAA----G-TGAAT---------CAT-----TTTCGTTTGAGCAAAATTAATTAGAAA
gi|133875 : -TTCCCAC-AGACTGCTT--GAAAG--AA---AATAA----A-TTATT---------TGTGTTTTTTTCGTTTGAACAAAGCGAATTAGAAAATAtca
gi|133876 : tctctatagTCTTTTA-TTTCCTG-AAAATACTTTGAAAAG--AA---AAGGA----A-----T---------TAT-----TTTTGTTTG---AAAATAAAATAGAAA
gi|133877 : CTTTAA-TGTCCTA-CATTTAATTTGAAAAATAAATGCAATAA----A-TGGTT---------AAT-----TCTTGTTTGAGCAAAACGAATTTGAAAt
gi|133878 : TTTTA-TTTTCTG-ATACTATTTTGAAAAG--AA---AAGAA----G-TGATT---------TAT-----TTTCGTTTGAGCAAAATTAATTAGAAAt
gi|133879 : TTTTAATTCCCTG-AGTTTGCTTTGAAAAA--TA---AATAA----A-TGATTAAACAATAATAT-----TTTCGTT-----AAAGGGAATTGGAAAATAtca
gi|133880 : TTTA-TTTCCTG-AATGTGATTTGAAAAG--AA---AAAAACTATA-TGACT---------TAT-----TTTCGTTTGAGCAAAGCCATTTAGAAA
gi|133881 : TTA-TTCACAG-AATTTACTTTGAAGAT--AA---AATAA----A-TGAAT---------CAT-----TTTCACTTGAGCGAAGTGAATTA
gi|133882 : A-TTCCCTG-AGTTTACTTTGAAAA---AC---CCTAA----A-TGATT---------TAT-----TTTCGTTTGAGC-AGGTGAATTAGAAA
gi|133883 : CTG-ACGTTGCTTTGAAAAG--AA---AATGA----A-TTATT---------TAT-----TTTCGTTCGAGCAATACGAATTAGAAAATA
gi|133884 : TTTGAAAAG--AA---AATGA----A-TGGTT---------CAT-----TTTCGTTTGAGCAAAACGAATTAGAAA