lowQualScore : 333333333333 1111111 3333333333333333333333333333 1111 22 22222
lowQualScore : 3 3 3 0 000000000000 3 44 7777 3 1111111 4 999999 44 3 3 3 1111111111111111111111111111 0000 66 11 777 9999 6 11111
lowQualScore : . . . . ............ . .. .... . ....... . ...... .. . . . ............................ .... .. .. ... .... . .....
lowQualScore : 3 3 3 2 222222222222 3 66 1111 2 1111111 8 666666 22 1 1 3 5555555555555555555555555555 8888 11 11 888 4444 0 33333
consensus : ACGCTATGCTACCAGAAGTGC-CCTTGGGTCTGCAATT----T------TT-CAGTGTCTG--AACAGTATACC----AAGGGG-----AGACTACTTTGCGGCATTTAGGTCGTGG------ACAGCAA--GA-CTTCAAAA-GTGTGT-ATCTGTG-C-G-----------G-G-GGAA--TACTTTGAAGGGTTGGCC--T--AA---AAAAA----TCCCGTTCCTGTGAAAATCTTAAATATCCGAAGACCA---GTGACAGAATATATTGAATGCCCCTCGTA
Reference ( gi|25987 ) : ACGCTATGCTACTAGAAATGC-CCTTGGGTCTGCAATT----G------TT-CAGTGTCTG--AACAGTATACC----AAGGAG-----AAATTACTTTGCGGCATTTAGGTCGTGG------ACAGCAA--GA-CTTCAAAA-GTGTGT-ATCTATG-C-G-----------G-G-GGAT--TACTTTGAAGGATTTGCC--T--AA---AAAAA----TCCCGTTCCTGCGAAAATCTTAAATATCCGAAGACCA---GAGACAGAATATATTGAATGCCCCTCGTA
gi|25982 : ACGCTATGCTACTAGAAGTGC-CCTTGGGTCTGCAATT----T------TT-CAGTGTCTG--AACAGTATACC----AAGGGG-----AGACTACTTTACGGCATTTATGTCATAG------ACAGTAA--GA-CTTCAATC-GTGCGC-ATCTGTG-T-G-----------G-GAGGAA--TACTTTGAAGGGTTGGCC--TGAAG---AAAAA----TCCTGATACTGTGAAAATCTTAAATATCCGAAGACCA---GTGACAGAATATACTGAATGCCCCTCGTA
gi|25985 : aaACGTTATGCTACTAGAAGTGC-CCTTGGGTCTGAAATG----T------TT-CAGTGTCTG--AATAGTATACC----AAGGGG-----ATACTACTTTGCGGCATTTAGGTCGTGG------ACAGCAA--TA-CTTCAAAA-GTGTGT-ATATGTG-C-G-----------G-G-GGAA--TACTTTAAAGAGTTGACC--T--GA---GGAAA----TCCCGTTCCTGTGAAAATATTAAATTTCCGAAGACCA---ATGACATAATTTATTGAATGTCCCTCGTA
gi|25983 : aaACACTATGCTATCAGAGGTGC-CCTTTGGTCTGCAATT----T------TT-CAGTGTCTG--AACAGTATACC----AAGGGG-----AGACTTCTTTGCAGCATTTAGGTTGTGG------ATAGCAA--GA-CTTCTAAA-GTGTGT-ATCTGTG-C-G-----------GAG-GAAA--TACTTTGAAGGGTTGGCC--TG-AA---AAAAA----TCCCATTCATGTAAAAATCGTAAATATCCAAAGACCA---GTGACAGGATATATTGAATACCACT
gi|25984 : aaACGGTATGCTACTAGAAGTGC-TCTTGGGTCTGCATTT----T------TT-CAGTGTCTG--AACAGTATACC----AAGAGG-----AGGCTGTTTTGCGGCATTTAGGTCGTGG------ATAGCGA--GA-CATCAAAA-GTGTGT-ATCTGTGTT-G-----------G-G-GGAA--TACTTTGAAGGGTTGGCCGGG--AA---TAAAA----T-CCGTTCCTGTGAAAATGTTAAATAAAAGAAGACCA---ATGACAATATATATTGAATACCCCTTGTA
gi|25988 : aaACGCTTTGCCTTCAAACGTGCGCTTTGTATCGG-AATA----T------TT-TAATTTCTC--AACAATATACC----AAGAGG-----AGACTACTTTGTAGCGTTT-TGCCAAGG------ATAGCAATTGG-GGTCAAGCTGTGTGTCGTCT----C-A-----------G-GCAAAG--TATTTAGAAGGGTT
gi|25986 : CGTTATGCTATCAGATATAC-CATTGGGCCGGTAATT-----------TT-TAGCTTCTG--AACAGTATACC----AAGGTG-----AGACTTCTTATCGGCATTAAGGTTGTAG------ACAGCAA--GA-TTTCAAAA-TTATGT-ATATGTA-CCG-----------A-G-GGAA--TACCTCGAAGGGTTGGCC--TTAAA---AAAAA----TCTTGTTCCTATGAAAATCTTAAATATCCGAAGACCA---GTGACAGAATATATTGAATGCCACTCGTAgtaacaagaggtgtttatatattatcagtatctgatagttccataatccagtaacataatatgtaacgaattacccccgta
gi|25989 : aagCGCTATGCTACTAGATGTGC-CCTTTGGTCTGCAATT----G------TT-CAGTGGCTGGCAGCAATA
gi|25990 : GCTATGTTACTAGAAGTGG-TTTTGGGTCTGCAATT----T------TT-CATTGTCTG--AACAGTATACC----AAGGGG-----AGACTTCCTTGCGGTATTTAGATCGTGG------ACAGAAA--GG-TTTCAAAA-GTATGT-GTCTTTG-CAA-----------G-G-GGAA--TACTTTAAAGAGGTGGCC--T--AAAACAAAAA----TCCCGTTCCTTTGAAAATCTTAAATACCCGAAGACCA---GTGACcttcaaaagcgtgtatctgtgcgaattgggagcgggggcatactttgaagggtttgtctgaaaaaaatcccttccctgtgaaaatcttaaatacccgaagaccagtgacagaatatattgaatgcccgtcgta
gi|25991 : GTTATGCCTCCAAAAGTGA-CCTTAGAACCGGAATA----T------TT-CATTGTCTC--AACAATATGTC----AAGGAG-------ACTACTATGCTGTGTTTAGGTCATGGATTATTATAA-AA--GATCTTCAAAA--TGT
gi|25993 : TGTTAC-AGAAATAT-C-TAGGATCTTCAAT-----A------TTACAGTGTCTG--TACAGTATACC----TAGAAA-----AGACTA
gi|25994 : ACAAGAAGTGC-CCTTGGGTCTGCAATTTTCTGCAATTTTT-CAGTGTCTG--AACAGTATACC----AAGGGG-----AGACTACTTTGCGGCATTAAGGTTGTGG------ATAGCGA--GA-CTTCAAAA-GTGTCT-GTTCA-----G-----------G-G-GGAA--TACTTTGAAGGGTTGGCC--T--GA---AAAAA----ATCCGTTCCTGTGAAAATGTTAAATATAAGAAGACCA---GTGACAAAATATATTGAATACCCCTTGTA
gi|25995 : GC-CTTTGGATCCTCCATT----T------TT-CAGTATCTG--ATAGGTATACCCAAAAAGGAGTATACAAATTGTTT--CAGAAACTCGAT--TAA-----------AA--GA-TTGCAAAT-GTGTGT--TCTG-G-CTA-----------A-A-GGATACTATTTCGAAGG
gi|25996 : GTATATC----AAGGGC-----GGACTATTTTGCG-CATATAGGTCGTGG------ACAGCAA--TA-TTTCCAAA-GTGTGT-AT--ATG-T-G-------------------------TTG--------GCC--T--GA---AAAAAAAATTTTCGTTCCAGTGAAAATCTTCAATATCTGAAGACCA---GTGACAGAATATATTGAATGCCCCTCGtaattaaaccaaacaacttcatctagtataaaacataaaacaagttttcgaacacccctcgta
gi|25989 : G------GCAGCAA--TA-CTTCAAAA-GCGTGT-ATCTGTG-C-GAATTGGGAGCGG-G-GGCA--TACTTTGAAGGGTTTGTC--TG-AA---AAAAA----TCCCTTCCCTGTGAAAATCTTAAATACCCGAAGACCA---GTGACAGAATATATTGAATGCCCGTCGTA
gi|25997 : cgctatgctactagatgtgccctttggtctgcaattgttcagtggctAGCGC--AA-CTCCAAAA-GTGTGT-ATCTGTT-CAA-----------G-G-GGAC--TACTTTCAGGG--TTGC
gi|25997 : TCCAAATACCA---GTGACAGAGTATATTGAATCCCCCTCATAaattggacgtattttaatattacatgtgccagtatctgtttgttccaaataccagtgacagagtatattgaatccccctcata
gi|25999 : agcgcaactccaaaagtgtgtatctgttcaaggggactactttcagggttgcaattggacgtattttaatattacatgtgccagtatctgtttgtGAAGACCATTAGTGACAAAATTTATTGAATGCCCCTCGTA
gi|25998 : GAAGGCCATTAGTGACAGAATATATTGAATACCCCTCATA
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|25992 ): TATACCACTAAAAGCGCCATTGGTTTTGCATATTACAGTATCTGCATAGAATGCCTGGTGGGGACTTTAATAAAGCCTATAAGAATGGATATTGAGTATGCAAAAGTTTGTTACAGCACGAAGAGACTACTTTGAGGGGTTG
Alignments
lowQualScore : 11111111111 2222222222222 222222222 111
lowQualScore : 4 2 0 22222222222 33 33 1 44 44 555 3 888888 0 33 2 2 33 2 2222222222222 2 2 2 2 555 888888 333333333 555 44 777777 3 44 2 6666 6666 000 44
lowQualScore : . . . ........... .. .. . .. .. ... . ...... . .. . . .. . ............. . . . . ... ...... ......... ... .. ...... . .. . .... .... ... ..
lowQualScore : 4 9 6 66666666666 99 99 1 22 22 444 1 222222 4 77 7 7 11 9 0000000000000 9 9 9 9 000 888888 000000000 888 66 444444 3 66 9 1111 1111 000 22
consensus : ACGCTATGCTACTAGAAGTGC-CCTTGGGTCTGCAAT----------TTTTCAGTGTCTG--AACAGTATACC--AAGGGGAGACTAC--TT--TGCGGCATTTAGG---TCG-TGG------ACAGCAA--GA-CTTCAAAA-GTGTGT-ATCTGTG-C-G-----------G-G-G-GAA-TAC---TTTGAAGGG------TTGGCC------T--AA---AA--AAA----TCCCGTTCCTGTGAAAATCT-TA--AATATCCGA-AG----A----CCA---GTGACAGAATATAT--TGAATGCCCCTCGTA
Reference ( family-856 ) : ACGCTATGCTACCAGAAGTGC-CCTTGGGTCTGCAAT----------TTTTCAGTGTCTG--AACAGTATACC--AAGGGGAGACTAC--TT--TGCGGCATTTAGG---TCG-TGG------ACAGCAA--GA-CTTCAAAA-GTGTGT-ATCTGTG-C-G-----------G-G-G-GAA-TAC---TTTGAAGGG------TTGGCC------T--AA---AA--AAA----TCCCGTTCCTGTGAAAATCT-TA--AATATCCGA-AG----A----CCA---GTGACAGAATATAT--TGAATGCCCCTCGTA
gi|25982 : ACGCTATGCTACTAGAAGTGC-CCTTGGGTCTGCAAT----------TTTTCAGTGTCTG--AACAGTATACC--AAGGGGAGACTAC--TT--TACGGCATTTATG---TCA-TAG------ACAGTAA--GA-CTTCAATC-GTGCGC-ATCTGTG-T-G-----------G-GAG-GAA-TAC---TTTGAAGGG------TTGGCC------TGAAG---AA--AAA----TCCTGATACTGTGAAAATCT-TA--AATATCCGA-AG----A----CCA---GTGACAGAATATAC--TGAATGCCCCTCGTA
gi|25983 : aaACACTATGCTATCAGAGGTGC-CCTTTGGTCTGCAAT----------TTTTCAGTGTCTG--AACAGTATACC--AAGGGGAGACTTC--TT--TGCAGCATTTAGG---TTG-TGG------ATAGCAA--GA-CTTCTAAA-GTGTGT-ATCTGTG-C-G-----------GAG-G-AAA-TAC---TTTGAAGGG------TTGGCC------TG-AA---AA--AAA----TCCCATTCATGTAAAAATCG-TA--AATATCCAA-AG----A----CCA---GTGACAGGATATAT--TGAATACCACT
gi|25984 : aaACGGTATGCTACTAGAAGTGC-TCTTGGGTCTGCATT----------TTTTCAGTGTCTG--AACAGTATACC--AAGAGGAGGCTGT--TT--TGCGGCATTTAGG---TCG-TGG------ATAGCGA--GA-CATCAAAA-GTGTGT-ATCTGTGTT-G-----------G-G-G-GAA-TAC---TTTGAAGGG------TTGGCCGG----G--AA---TA--AAA----T-CCGTTCCTGTGAAAATGT-TA--AATAAAAGA-AG----A----CCA---ATGACAATATATAT--TGAATACCCCTTGTA
gi|25985 : aaACGTTATGCTACTAGAAGTGC-CCTTGGGTCTGAAAT----------GTTTCAGTGTCTG--AATAGTATACC--AAGGGGATACTAC--TT--TGCGGCATTTAGG---TCG-TGG------ACAGCAA--TA-CTTCAAAA-GTGTGT-ATATGTG-C-G-----------G-G-G-GAA-TAC---TTTAAAGAG------TTGACC------T--GA---GG--AAA----TCCCGTTCCTGTGAAAATAT-TA--AATTTCCGA-AG----A----CCA---ATGACATAATTTAT--TGAATGTCCCTCGTA
gi|25986 : aaCGTTATGCTATCAGATATAC-CATTGGGCCGGTAAT----------TTTT-AGCTTCTG--AACAGTATACC--AAGGTGAGACTTC--TT--ATCGGCATTAAGG---TTG-TAG------ACAGCAA--GA-TTTCAAAA-TTATGT-ATATGTA-CCG-----------A-G-G-GAA-TAC---CTCGAAGGG------TTGGCC------TTAAA---AA--AAA----TCTTGTTCCTATGAAAATCT-TA--AATATCCGA-AG----A----CCA---GTGACAGAATATAT--TGAATGCCACTCGTA
gi|25987 : aagACGCTATGCTACTAGAAATGC-CCTTGGGTCTGCAAT----------TGTTCAGTGTCTG--AACAGTATACC--AAGGAGAAATTAC--TT--TGCGGCATTTAGG---TCG-TGG------ACAGCAA--GA-CTTCAAAA-GTGTGT-ATCTATG-C-G-----------G-G-G-GAT-TAC---TTTGAAGGA------TTTGCC------T--AA---AA--AAA----TCCCGTTCCTGCGAAAATCT-TA--AATATCCGA-AG----A----CCA---GAGACAGAATATAT--TGAATGCCCCTCGTA
gi|25988 : ACGCTTTGCCTTCAAACGTGCGCTTTGTATCGG-AAT----------ATTTTAATTTCTC--AACAATATACC--AAGAGGAGACTAC--TT--TGTAGCGTTT-TG---CCA-AGG------ATAGCAATTGG-GGTCAAGCTGTGTGTCGTCT----C-A-----------G-G-C-AAAGTAT---TTAGAAGGG------TTG---------T--AA---CA--AGA-------GGTGTTTAT----ATAT-TATCAGTATCTGATAGTTCCATAATCCA---GTAACATAATATGTAACGAATTACCCCCGTA
gi|25989 : CGCTATGCTACTAGATGTGC-CCTTTGGTCTGCAAT----------TGTTCAGTGGCTGGCAGCAATA
gi|25989 : G------GCAGCAA--TA-CTTCAAAA-GCGTGT-ATCTGTG-C-GAATTGGGAGCGG-G-G-GCA-TAC---TTTGAAGGG------TTTGTC------TG-AA---AA--AAA----TCCCTTCCCTGTGAAAATCT-TA--AATACCCGA-AG----A----CCA---GTGACAGAATATAT--TGAATGCCCGTCGTActtcaaaagcgtgtatctgtgcgaattgggagcgggggcatactttgaagggtttgtctgaaaaaaatcccttccctgtgaaaatcttaaatacccgaagaccagtgacagaatatattgaatgcccgtcgta
gi|25990 : cgctatgctactagatgtgccctttggtctgcaattgttcagtggctGCTATGTTACTAGAAGTGG-TTTTGGGTCTGCAAT----------TTTTCATTGTCTG--AACAGTATACC--AAGGGGAGACTTC--CT--TGCGGTATTTAGA---TCG-TGG------ACAGAAA--GG-TTTCAAAA-GTATGT-GTCTTTG-CAA-----------G-G-G-GAA-TAC---TTTAAAGAG------GTGGCC------T--AAAACAA--AAA----TCCCGTTCCTTTGAAAATCT-TA--AATACCCGA-AG----A----CCA---GTGAC
gi|25991 : GTTATGCCTCCAAAAGTGA-CCTTAGAACCGGAAT----------ATTTCATTGTCTC--AACAATATGTC--AAGG--AGACTAC--TA--TGCTGTGTTTAGG---TCA-TGGATTATTATAA-AA--GATCTTCAAAA--TGT
gi|25992 : TATACCACTAAAAGCGC-CATTGGTTTTGCA-T----------ATTACAGTATCTG--CATAGAATGCC--TGGTGGGGACT----TTAATAAAGCCTATAAG----AA-TGG------ATATTGA--GT-ATGCAAAA-GTTTGT-TACAGCA-C-G-----------A-A-GAGAC-TAC---TTTGAGGGG------TTG
gi|25993 : TGTTAC-AGAAATAT-C-TAGGATCTTCAAT----------ATTACAGTGTCTG--TACAGTATACC--TAGAAAAGACTA
gi|25994 : ACAAGAAGTGC-CCTTGGGTCTGCAATTTTCTGCAATTTTTCAGTGTCTG--AACAGTATACC--AAGGGGAGACTAC--TT--TGCGGCATTAAGG---TTG-TGG------ATAGCGA--GA-CTTCAAAA-GTGT-----CTGTT-CAG-----------G-G-G-GAA-TAC---TTTGAAGGG------TTGGCC------T--GA---AA--AAA----ATCCGTTCCTGTGAAAATGT-TA--AATATAAGA-AG----A----CCA---GTGACAAAATATAT--TGAATACCCCTTGTA
gi|25995 : GC-CTTTGGATCCTCCAT----------TTTTCAGTATCTG--ATAGGTATACCCAAAAAGGAGTATACAAAT--TGT----TTCAGAAACTCGATTA------A----AA--GA-TTGCAAAT-GTGTGT--TCTG-G-C-T-----------A-A-A-GGA-TACTATTTCGAAGG
gi|25996 : GTATATC--AAGGGCGGACTAT--TT--TGCG-CATATAGG---TCG-TGG------ACAGCAA--TA-TTTCCAAA-GTGTGT-ATATGTG----------------------------------------------TTGGCC------T--GA---AA--AAAAAATTTTCGTTCCAGTGAAAATCT-TC--AATATCTGA-AG----A----CCA---GTGACAGAATATAT--TGAATGCCCCTCGtaattaaaccaaacaacttcatctagtataaaacataaaacaagttttcgaacacccctcgta
gi|25997 : AGCGC--AA-CTCCAAAA-GTGTGT-ATCTGTT-C-AA----------G-G-G-GAC-TAC----TTTCAGGGTTGCAATTGGACGTATTTT--AA---TATTACA----T---GTGCCAGT----ATCTGTT--TGT-TCCAA-AT----A----CCA---GTGACAGAGTATAT--TGAATCCCCCTCATA
gi|25998 : GA-AG----G----CCATTAGTGACAGAATATAT--TGAATACCCCTCATA
gi|25999 : GA-AG----A----CCATTAGTGACAAAATTTAT--TGAATGCCCCTCGTA
Alignments
lowQualScore : 11111111111 2222222222222 222222222 111
lowQualScore : 1 2 0 22222222222 33 33 1 44 44 555 3 888888 0 33 2 2 33 2 2222222222222 2 2 2 2 555 888888 333333333 555 44 777777 3 44 2 6666 6666 000 44
lowQualScore : . . . ........... .. .. . .. .. ... . ...... . .. . . .. . ............. . . . . ... ...... ......... ... .. ...... . .. . .... .... ... ..
lowQualScore : 4 9 6 66666666666 99 99 1 22 22 444 1 222222 4 77 7 7 11 9 0000000000000 9 9 9 9 000 888888 000000000 888 66 444444 3 66 9 1111 1111 000 22
consensus : ACGCTATGCTACTAGAAGTGC-CCTTGGGTCTGCAAT----------TTTTCAGTGTCTG--AACAGTATACC--AAGGGGAGACTAC--TT--TGCGGCATTTAGG---TCG-TGG------ACAGCAA--GA-CTTCAAAA-GTGTGT-ATCTGTG-C-G-----------G-G-G-GAA-TAC---TTTGAAGGG------TTGGCC------T--AA---AA--AAA----TCCCGTTCCTGTGAAAATCT-TA--AATATCCGA-AG----A----CCA---GTGACAGAATATAT--TGAATGCCCCTCGTA
Reference ( family-856 ) : ACGCTATGCTACTAGAAGTGC-CCTTGGGTCTGCAAT----------TTTTCAGTGTCTG--AACAGTATACC--AAGGGGAGACTAC--TT--TGCGGCATTTAGG---TCG-TGG------ACAGCAA--GA-CTTCAAAA-GTGTGT-ATCTGTG-C-G-----------G-G-G-GAA-TAC---TTTGAAGGG------TTGGCC------T--AA---AA--AAA----TCCCGTTCCTGTGAAAATCT-TA--AATATCCGA-AG----A----CCA---GTGACAGAATATAT--TGAATGCCCCTCGTA
gi|25982 : ACGCTATGCTACTAGAAGTGC-CCTTGGGTCTGCAAT----------TTTTCAGTGTCTG--AACAGTATACC--AAGGGGAGACTAC--TT--TACGGCATTTATG---TCA-TAG------ACAGTAA--GA-CTTCAATC-GTGCGC-ATCTGTG-T-G-----------G-GAG-GAA-TAC---TTTGAAGGG------TTGGCC------TGAAG---AA--AAA----TCCTGATACTGTGAAAATCT-TA--AATATCCGA-AG----A----CCA---GTGACAGAATATAC--TGAATGCCCCTCGTA
gi|25983 : aaACACTATGCTATCAGAGGTGC-CCTTTGGTCTGCAAT----------TTTTCAGTGTCTG--AACAGTATACC--AAGGGGAGACTTC--TT--TGCAGCATTTAGG---TTG-TGG------ATAGCAA--GA-CTTCTAAA-GTGTGT-ATCTGTG-C-G-----------GAG-G-AAA-TAC---TTTGAAGGG------TTGGCC------TG-AA---AA--AAA----TCCCATTCATGTAAAAATCG-TA--AATATCCAA-AG----A----CCA---GTGACAGGATATAT--TGAATACCACT
gi|25984 : aaACGGTATGCTACTAGAAGTGC-TCTTGGGTCTGCATT----------TTTTCAGTGTCTG--AACAGTATACC--AAGAGGAGGCTGT--TT--TGCGGCATTTAGG---TCG-TGG------ATAGCGA--GA-CATCAAAA-GTGTGT-ATCTGTGTT-G-----------G-G-G-GAA-TAC---TTTGAAGGG------TTGGCCGG----G--AA---TA--AAA----T-CCGTTCCTGTGAAAATGT-TA--AATAAAAGA-AG----A----CCA---ATGACAATATATAT--TGAATACCCCTTGTA
gi|25985 : aaACGTTATGCTACTAGAAGTGC-CCTTGGGTCTGAAAT----------GTTTCAGTGTCTG--AATAGTATACC--AAGGGGATACTAC--TT--TGCGGCATTTAGG---TCG-TGG------ACAGCAA--TA-CTTCAAAA-GTGTGT-ATATGTG-C-G-----------G-G-G-GAA-TAC---TTTAAAGAG------TTGACC------T--GA---GG--AAA----TCCCGTTCCTGTGAAAATAT-TA--AATTTCCGA-AG----A----CCA---ATGACATAATTTAT--TGAATGTCCCTCGTA
gi|25986 : aaCGTTATGCTATCAGATATAC-CATTGGGCCGGTAAT----------TTTT-AGCTTCTG--AACAGTATACC--AAGGTGAGACTTC--TT--ATCGGCATTAAGG---TTG-TAG------ACAGCAA--GA-TTTCAAAA-TTATGT-ATATGTA-CCG-----------A-G-G-GAA-TAC---CTCGAAGGG------TTGGCC------TTAAA---AA--AAA----TCTTGTTCCTATGAAAATCT-TA--AATATCCGA-AG----A----CCA---GTGACAGAATATAT--TGAATGCCACTCGTA
gi|25987 : aagACGCTATGCTACTAGAAATGC-CCTTGGGTCTGCAAT----------TGTTCAGTGTCTG--AACAGTATACC--AAGGAGAAATTAC--TT--TGCGGCATTTAGG---TCG-TGG------ACAGCAA--GA-CTTCAAAA-GTGTGT-ATCTATG-C-G-----------G-G-G-GAT-TAC---TTTGAAGGA------TTTGCC------T--AA---AA--AAA----TCCCGTTCCTGCGAAAATCT-TA--AATATCCGA-AG----A----CCA---GAGACAGAATATAT--TGAATGCCCCTCGTA
gi|25988 : ACGCTTTGCCTTCAAACGTGCGCTTTGTATCGG-AAT----------ATTTTAATTTCTC--AACAATATACC--AAGAGGAGACTAC--TT--TGTAGCGTTT-TG---CCA-AGG------ATAGCAATTGG-GGTCAAGCTGTGTGTCGTCT----C-A-----------G-G-C-AAAGTAT---TTAGAAGGG------TTG---------T--AA---CA--AGA-------GGTGTTTAT----ATAT-TATCAGTATCTGATAGTTCCATAATCCA---GTAACATAATATGTAACGAATTACCCCCGTA
gi|25989 : CGCTATGCTACTAGATGTGC-CCTTTGGTCTGCAAT----------TGTTCAGTGGCTGGCAGCAATA
gi|25989 : G------GCAGCAA--TA-CTTCAAAA-GCGTGT-ATCTGTG-C-GAATTGGGAGCGG-G-G-GCA-TAC---TTTGAAGGG------TTTGTC------TG-AA---AA--AAA----TCCCTTCCCTGTGAAAATCT-TA--AATACCCGA-AG----A----CCA---GTGACAGAATATAT--TGAATGCCCGTCGTActtcaaaagcgtgtatctgtgcgaattgggagcgggggcatactttgaagggtttgtctgaaaaaaatcccttccctgtgaaaatcttaaatacccgaagaccagtgacagaatatattgaatgcccgtcgta
gi|25990 : cgctatgctactagatgtgccctttggtctgcaattgttcagtggctGCTATGTTACTAGAAGTGG-TTTTGGGTCTGCAAT----------TTTTCATTGTCTG--AACAGTATACC--AAGGGGAGACTTC--CT--TGCGGTATTTAGA---TCG-TGG------ACAGAAA--GG-TTTCAAAA-GTATGT-GTCTTTG-CAA-----------G-G-G-GAA-TAC---TTTAAAGAG------GTGGCC------T--AAAACAA--AAA----TCCCGTTCCTTTGAAAATCT-TA--AATACCCGA-AG----A----CCA---GTGAC
gi|25991 : GTTATGCCTCCAAAAGTGA-CCTTAGAACCGGAAT----------ATTTCATTGTCTC--AACAATATGTC--AAGG--AGACTAC--TA--TGCTGTGTTTAGG---TCA-TGGATTATTATAA-AA--GATCTTCAAAA--TGT
gi|25992 : TATACCACTAAAAGCGC-CATTGGTTTTGCA-T----------ATTACAGTATCTG--CATAGAATGCC--TGGTGGGGACT----TTAATAAAGCCTATAAG----AA-TGG------ATATTGA--GT-ATGCAAAA-GTTTGT-TACAGCA-C-G-----------A-A-GAGAC-TAC---TTTGAGGGG------TTG
gi|25993 : TGTTAC-AGAAATAT-C-TAGGATCTTCAAT----------ATTACAGTGTCTG--TACAGTATACC--TAGAAAAGACTA
gi|25994 : ACAAGAAGTGC-CCTTGGGTCTGCAATTTTCTGCAATTTTTCAGTGTCTG--AACAGTATACC--AAGGGGAGACTAC--TT--TGCGGCATTAAGG---TTG-TGG------ATAGCGA--GA-CTTCAAAA-GTGT-----CTGTT-CAG-----------G-G-G-GAA-TAC---TTTGAAGGG------TTGGCC------T--GA---AA--AAA----ATCCGTTCCTGTGAAAATGT-TA--AATATAAGA-AG----A----CCA---GTGACAAAATATAT--TGAATACCCCTTGTA
gi|25995 : GC-CTTTGGATCCTCCAT----------TTTTCAGTATCTG--ATAGGTATACCCAAAAAGGAGTATACAAAT--TGT----TTCAGAAACTCGATTA------A----AA--GA-TTGCAAAT-GTGTGT--TCTG-G-C-T-----------A-A-A-GGA-TACTATTTCGAAGG
gi|25996 : GTATATC--AAGGGCGGACTAT--TT--TGCG-CATATAGG---TCG-TGG------ACAGCAA--TA-TTTCCAAA-GTGTGT-ATATGTG----------------------------------------------TTGGCC------T--GA---AA--AAAAAATTTTCGTTCCAGTGAAAATCT-TC--AATATCTGA-AG----A----CCA---GTGACAGAATATAT--TGAATGCCCCTCGtaattaaaccaaacaacttcatctagtataaaacataaaacaagttttcgaacacccctcgta
gi|25997 : AGCGC--AA-CTCCAAAA-GTGTGT-ATCTGTT-C-AA----------G-G-G-GAC-TAC----TTTCAGGGTTGCAATTGGACGTATTTT--AA---TATTACA----T---GTGCCAGT----ATCTGTT--TGT-TCCAA-AT----A----CCA---GTGACAGAGTATAT--TGAATCCCCCTCATA
gi|25998 : GA-AG----G----CCATTAGTGACAGAATATAT--TGAATACCCCTCATA
gi|25999 : GA-AG----A----CCATTAGTGACAAAATTTAT--TGAATGCCCCTCGTA
blockSeqs : C G TTTCTGCAATT GC CA T AA AA AAC A ATTATT TT T T CG T GAATTGGGAGCG A . A G TAT TTGCAA GTATTTT AAC TT AAATTT G TC T TTCC TAAT TTA AA
blockSeqs : T . T . . G . . . . . . . . A . CG . . . . . . GGG . . TC . . . . . TTA .
blockSeqs : T . T . . A . . . . . . . . A . AA . . . . . . TTA . . TC . . . . . . .
blockSeqs : C . G . . T . . . . . . . . A . AG . . . . . . TG . . TC . . . . . . .
blockSeqs : T . T . . A . . . . . . . . A . AA . . . . . . TG . . TC . . . . . . .
blockSeqs : C . T . . A . . . . . . . . A . G . . . . . . T . . TC . . . . . . .
blockSeqs : T . A . . T . . . . . . . . A . G . . . . . . T . . TC . . . . . . .
blockSeqs : T . T . . A . . . . . . . . G . G . . . . . . T . . AT . . . . . . .
blockSeqs : C . T . . A . . . . . . . . T . G . . . . . . T . . T . . . . . . .
blockSeqs : T . A . . A . . . . . . . . A . A . . . . . . T . . T . . . . . . .
blockSeqs : A . A . . A . . . . . . . . A . G . . . . . . T . . . . . . . . . .
blockSeqs : . . A . . A . . . . . . . . . . T . . . . . . . . . . .
blockSeqs : . T . . . . . . . . . . . . . . . . . . .
blockSeqs : . . .
blockSeqCons : T********
originalCons : ACGCTATGCTACTAGAAGTGC-CCTTGGGTCTGCAAT----------TTTTCAGTGTCTG--AACAGTATACC--AAGGGGAGACTAC--TT--TGCGGCATTTAGG---TCG-TGG------ACAGCAA--GA-CTTCAAAA-GTGTGT-ATCTGTG-C-G-----------G-G-G-GAA-TAC---TTTGAAGGG------TTGGCC------T--AA---AA--AAA----TCCCGTTCCTGTGAAAATCT-TA--AATATCCGA-AG----A----CCA---GTGACAGAATATAT--TGAATGCCCCTCGTA
finalCons : ACGCTATGCTACTAGAAGTGC-CCTTGGGTCTGCAAT----------TTTTCAGTGTCTG--AACAGTATACC--AAGGGGAGACTAC--TT--TGCGGCATTTAGG---TCG-TGG------ACAGCAA--GA-CTTCAAAA-GTGTGT-ATCTGTG-C-G-----------G-G-G-GAA-TAC---TTTGAAGGG------TTGGCCT--------AA---AA--AAA----TCCCGTTCCTGTGAAAATCT-TA--AATATCCGA-AG----A----CCA---GTGACAGAATATAT--TGAATGCCCCTCGTA
Alignments
lowQualScore : 11111111111 2222222222222 222222222 111
lowQualScore : 1 2 0 22222222222 33 33 1 44 44 555 3 888888 0 33 2 2 33 2 2222222222222 2 2 2 2 555 888888 333333333 555 44 777777 3 44 2 6666 6666 000 44
lowQualScore : . . . ........... .. .. . .. .. ... . ...... . .. . . .. . ............. . . . . ... ...... ......... ... .. ...... . .. . .... .... ... ..
lowQualScore : 4 9 6 66666666666 99 99 1 22 22 444 1 222222 4 77 7 7 11 9 0000000000000 9 9 9 9 000 888888 000000000 888 66 444444 3 66 9 1111 1111 000 22
consensus : ACGCTATGCTACTAGAAGTGC-CCTTGGGTCTGCAAT----------TTTTCAGTGTCTG--AACAGTATACC--AAGGGGAGACTAC--TT--TGCGGCATTTAGG---TCG-TGG------ACAGCAA--GA-CTTCAAAA-GTGTGT-ATCTGTG-C-G-----------G-G-G-GAA-TAC---TTTGAAGGG------TTGGCC------T--AA---AA--AAA----TCCCGTTCCTGTGAAAATCT-TA--AATATCCGA-AG----A----CCA---GTGACAGAATATAT--TGAATGCCCCTCGTA
Reference ( family-856 ) : ACGCTATGCTACTAGAAGTGC-CCTTGGGTCTGCAAT----------TTTTCAGTGTCTG--AACAGTATACC--AAGGGGAGACTAC--TT--TGCGGCATTTAGG---TCG-TGG------ACAGCAA--GA-CTTCAAAA-GTGTGT-ATCTGTG-C-G-----------G-G-G-GAA-TAC---TTTGAAGGG------TTGGCC------T--AA---AA--AAA----TCCCGTTCCTGTGAAAATCT-TA--AATATCCGA-AG----A----CCA---GTGACAGAATATAT--TGAATGCCCCTCGTA
gi|25982 : ACGCTATGCTACTAGAAGTGC-CCTTGGGTCTGCAAT----------TTTTCAGTGTCTG--AACAGTATACC--AAGGGGAGACTAC--TT--TACGGCATTTATG---TCA-TAG------ACAGTAA--GA-CTTCAATC-GTGCGC-ATCTGTG-T-G-----------G-GAG-GAA-TAC---TTTGAAGGG------TTGGCC------TGAAG---AA--AAA----TCCTGATACTGTGAAAATCT-TA--AATATCCGA-AG----A----CCA---GTGACAGAATATAC--TGAATGCCCCTCGTA
gi|25983 : aaACACTATGCTATCAGAGGTGC-CCTTTGGTCTGCAAT----------TTTTCAGTGTCTG--AACAGTATACC--AAGGGGAGACTTC--TT--TGCAGCATTTAGG---TTG-TGG------ATAGCAA--GA-CTTCTAAA-GTGTGT-ATCTGTG-C-G-----------GAG-G-AAA-TAC---TTTGAAGGG------TTGGCC------TG-AA---AA--AAA----TCCCATTCATGTAAAAATCG-TA--AATATCCAA-AG----A----CCA---GTGACAGGATATAT--TGAATACCACT
gi|25984 : aaACGGTATGCTACTAGAAGTGC-TCTTGGGTCTGCATT----------TTTTCAGTGTCTG--AACAGTATACC--AAGAGGAGGCTGT--TT--TGCGGCATTTAGG---TCG-TGG------ATAGCGA--GA-CATCAAAA-GTGTGT-ATCTGTGTT-G-----------G-G-G-GAA-TAC---TTTGAAGGG------TTGGCCGG----G--AA---TA--AAA----T-CCGTTCCTGTGAAAATGT-TA--AATAAAAGA-AG----A----CCA---ATGACAATATATAT--TGAATACCCCTTGTA
gi|25985 : aaACGTTATGCTACTAGAAGTGC-CCTTGGGTCTGAAAT----------GTTTCAGTGTCTG--AATAGTATACC--AAGGGGATACTAC--TT--TGCGGCATTTAGG---TCG-TGG------ACAGCAA--TA-CTTCAAAA-GTGTGT-ATATGTG-C-G-----------G-G-G-GAA-TAC---TTTAAAGAG------TTGACC------T--GA---GG--AAA----TCCCGTTCCTGTGAAAATAT-TA--AATTTCCGA-AG----A----CCA---ATGACATAATTTAT--TGAATGTCCCTCGTA
gi|25986 : aaCGTTATGCTATCAGATATAC-CATTGGGCCGGTAAT----------TTTT-AGCTTCTG--AACAGTATACC--AAGGTGAGACTTC--TT--ATCGGCATTAAGG---TTG-TAG------ACAGCAA--GA-TTTCAAAA-TTATGT-ATATGTA-CCG-----------A-G-G-GAA-TAC---CTCGAAGGG------TTGGCC------TTAAA---AA--AAA----TCTTGTTCCTATGAAAATCT-TA--AATATCCGA-AG----A----CCA---GTGACAGAATATAT--TGAATGCCACTCGTA
gi|25987 : aagACGCTATGCTACTAGAAATGC-CCTTGGGTCTGCAAT----------TGTTCAGTGTCTG--AACAGTATACC--AAGGAGAAATTAC--TT--TGCGGCATTTAGG---TCG-TGG------ACAGCAA--GA-CTTCAAAA-GTGTGT-ATCTATG-C-G-----------G-G-G-GAT-TAC---TTTGAAGGA------TTTGCC------T--AA---AA--AAA----TCCCGTTCCTGCGAAAATCT-TA--AATATCCGA-AG----A----CCA---GAGACAGAATATAT--TGAATGCCCCTCGTA
gi|25988 : ACGCTTTGCCTTCAAACGTGCGCTTTGTATCGG-AAT----------ATTTTAATTTCTC--AACAATATACC--AAGAGGAGACTAC--TT--TGTAGCGTTT-TG---CCA-AGG------ATAGCAATTGG-GGTCAAGCTGTGTGTCGTCT----C-A-----------G-G-C-AAAGTAT---TTAGAAGGG------TTG---------T--AA---CA--AGA-------GGTGTTTAT----ATAT-TATCAGTATCTGATAGTTCCATAATCCA---GTAACATAATATGTAACGAATTACCCCCGTA
gi|25989 : CGCTATGCTACTAGATGTGC-CCTTTGGTCTGCAAT----------TGTTCAGTGGCTGGCAGCAATA
gi|25989 : G------GCAGCAA--TA-CTTCAAAA-GCGTGT-ATCTGTG-C-GAATTGGGAGCGG-G-G-GCA-TAC---TTTGAAGGG------TTTGTC------TG-AA---AA--AAA----TCCCTTCCCTGTGAAAATCT-TA--AATACCCGA-AG----A----CCA---GTGACAGAATATAT--TGAATGCCCGTCGTActtcaaaagcgtgtatctgtgcgaattgggagcgggggcatactttgaagggtttgtctgaaaaaaatcccttccctgtgaaaatcttaaatacccgaagaccagtgacagaatatattgaatgcccgtcgta
gi|25990 : cgctatgctactagatgtgccctttggtctgcaattgttcagtggctGCTATGTTACTAGAAGTGG-TTTTGGGTCTGCAAT----------TTTTCATTGTCTG--AACAGTATACC--AAGGGGAGACTTC--CT--TGCGGTATTTAGA---TCG-TGG------ACAGAAA--GG-TTTCAAAA-GTATGT-GTCTTTG-CAA-----------G-G-G-GAA-TAC---TTTAAAGAG------GTGGCC------T--AAAACAA--AAA----TCCCGTTCCTTTGAAAATCT-TA--AATACCCGA-AG----A----CCA---GTGAC
gi|25991 : GTTATGCCTCCAAAAGTGA-CCTTAGAACCGGAAT----------ATTTCATTGTCTC--AACAATATGTC--AAGG--AGACTAC--TA--TGCTGTGTTTAGG---TCA-TGGATTATTATAA-AA--GATCTTCAAAA--TGT
gi|25992 : TATACCACTAAAAGCGC-CATTGGTTTTGCA-T----------ATTACAGTATCTG--CATAGAATGCC--TGGTGGGGACT----TTAATAAAGCCTATAAG----AA-TGG------ATATTGA--GT-ATGCAAAA-GTTTGT-TACAGCA-C-G-----------A-A-GAGAC-TAC---TTTGAGGGG------TTG
gi|25993 : TGTTAC-AGAAATAT-C-TAGGATCTTCAAT----------ATTACAGTGTCTG--TACAGTATACC--TAGAAAAGACTA
gi|25994 : ACAAGAAGTGC-CCTTGGGTCTGCAATTTTCTGCAATTTTTCAGTGTCTG--AACAGTATACC--AAGGGGAGACTAC--TT--TGCGGCATTAAGG---TTG-TGG------ATAGCGA--GA-CTTCAAAA-GTGT-----CTGTT-CAG-----------G-G-G-GAA-TAC---TTTGAAGGG------TTGGCC------T--GA---AA--AAA----ATCCGTTCCTGTGAAAATGT-TA--AATATAAGA-AG----A----CCA---GTGACAAAATATAT--TGAATACCCCTTGTA
gi|25995 : GC-CTTTGGATCCTCCAT----------TTTTCAGTATCTG--ATAGGTATACCCAAAAAGGAGTATACAAAT--TGT----TTCAGAAACTCGATTA------A----AA--GA-TTGCAAAT-GTGTGT--TCTG-G-C-T-----------A-A-A-GGA-TACTATTTCGAAGG
gi|25996 : GTATATC--AAGGGCGGACTAT--TT--TGCG-CATATAGG---TCG-TGG------ACAGCAA--TA-TTTCCAAA-GTGTGT-ATATGTG----------------------------------------------TTGGCC------T--GA---AA--AAAAAATTTTCGTTCCAGTGAAAATCT-TC--AATATCTGA-AG----A----CCA---GTGACAGAATATAT--TGAATGCCCCTCGtaattaaaccaaacaacttcatctagtataaaacataaaacaagttttcgaacacccctcgta
gi|25997 : AGCGC--AA-CTCCAAAA-GTGTGT-ATCTGTT-C-AA----------G-G-G-GAC-TAC----TTTCAGGGTTGCAATTGGACGTATTTT--AA---TATTACA----T---GTGCCAGT----ATCTGTT--TGT-TCCAA-AT----A----CCA---GTGACAGAGTATAT--TGAATCCCCCTCATA
gi|25998 : GA-AG----G----CCATTAGTGACAGAATATAT--TGAATACCCCTCATA
gi|25999 : GA-AG----A----CCATTAGTGACAAAATTTAT--TGAATGCCCCTCGTA