lowQualScore : 1 3333
lowQualScore : 5 44 888 3 1 4444 5 9 6
lowQualScore : . .. ... . . .... . . .
lowQualScore : 3 22 444 6 2 4444 7 6 0
consensus : GTGTCACGTTAGATTCACACGCACTNCCGAN-AGTCCACGC-G-TGCGGA-TCTGCCGTG---GG-GGTCATGAGATTCACACGC
Reference ( gi|43293 ) : GTGTCACGTTAGATTCACACGCACTCCCGAT-AGTCCACGC-G-TGTGGA-TGTGCCGT----GG-GGTCATGAGTTTCACATGC
gi|43296 : GTGTTACGTTAGATTCACACGCACTCCCGAT-AGTCCACGC-G-TGCGGA-TCTGCCGTCATCTG-GGTCATGAGTTTCAC
gi|43291 : GTGTCACGTTAGATTCAGAAGCACTACCGAT-AGTCCACGC-G-TGTGGA-TCTGCCGTG---GG-GGTCATGAGATTCACACGC
gi|43299 : GTGTCACGTTAGATTCACACGCACTCCCGAT-AGCACACGC-G-CTTAGA-TATGCAGT----GG-GGTCATGAGTTTCATAC
gi|43294 : GTGTCACGTAAGATTCACACGCACTCCTGAT-AAACCACGC-G-TGTGGA-TCTGCCGTGG--GG-GGTCATGAGATTCACACGC
gi|43292 : GTGTCACGTTAGATTCACACGCACTCCCGAT-AGTCCACGC-A-TGTTGATTCTTCCGTG---GG-GGTCATGAGATTCACACGC
gi|43295 : GTGTCACGTTAGATTCACACGTACTCCCGAT-AGTCTACGC-G-TGCAGA-TCTGTCGTAG--GG-GGTCATGAGATCCTCACGC
gi|43298 : GTGTCGCGTTAGATTCACACGCACTCCCGAC-AGTCCACGC-T-TGCGGA-TCTGCAGT----GATTGTCATGAGATTCACA
gi|43300 : GTGTCACGTTAGATTCACACGCACTCCCGAT-AGTCCACGcac
gi|43301 : GTGTTACGTTAGATTCACACGCACTCCCGAT-AGTCCGC
gi|43302 : GTGCCACGTTAGATTCACACGCACTGTCGAT-AGTACACGA-G-TATCAA-TCTACTGT----agattcacacgcgtaaaattcacacgc
gi|43303 : GTGTCACGTTAGATTCACACGCACT-ACGGTAAGTCCACGC-
gi|43304 : GTGTCACGTTAGATTCACAAGCACTACGGAA-AGTCCACGC-
gi|43297 : GTGTCGTGTTAGATTCACACGCACTACGGAA-AGTCCACGC-
gi|43305 : GTGTCACGTTATATTCACACGTACTACGGAA-AGTCCACGC-ATTATGGG-T
gi|43306 : GTGTCACGTTATATTCACAGGCACTACGGAA-AGTCCACGCTT-TGTGGG-T
gi|43307 : GTGTCACGTTATATTCACACGCACTACGGAA-AGTCCACAC-
gi|43308 : TGTCACGTTAGATTCACACGCACTACGGAA-AGTCCACGC-
gi|43309 : TCACGTTAGATTCACACGCACTACCGAA-AGCCCACGCTT-TATGGG-TGTGC
Alignments
lowQualScore : 111111
lowQualScore : 1 0 1 4 4 888888
lowQualScore : . . . . . ......
lowQualScore : 0 1 0 0 0 888888
consensus : GTGTCACGTTAGATTCACACGCACTNCCGANAGTCCACGCGTGCGGA-TCTGC-CGT-GG---GGGTCATGAGATTCACACGC
Reference ( family-852 ) : GTGTCACGTTAGATTCACACGCACTNCCGANAGTCCACGCGTGCGGA-TCTGC-CGT-GG---GGGTCATGAGATTCACACGC
gi|43291 : GTGTCACGTTAGATTCAGAAGCACTACCGATAGTCCACGCGTGTGGA-TCTGC-CGT-GG---GGGTCATGAGATTCACACGC
gi|43292 : GTGTCACGTTAGATTCACACGCACTCCCGATAGTCCACGCATGTTGATTCTTC-CGT-GG---GGGTCATGAGATTCACACGC
gi|43293 : GTGTCACGTTAGATTCACACGCACTCCCGATAGTCCACGCGTGTGGA-TGTGC-CGT--G---GGGTCATGAGTTTCACATGC
gi|43294 : GTGTCACGTAAGATTCACACGCACTCCTGATAAACCACGCGTGTGGA-TCTGC-CGTGGG---GGGTCATGAGATTCACACGC
gi|43295 : GTGTCACGTTAGATTCACACGTACTCCCGATAGTCTACGCGTGCAGA-TCTGT-CGTAGG---GGGTCATGAGATCCTCACGC
gi|43296 : GTGTTACGTTAGATTCACACGCACTCCCGATAGTCCACGCGTGCGGA-TCTGC-CGT-CATCTGGGTCATGAGTTTCAC
gi|43297 : GTGTCGTGTTAGATTCACACGCACTACGGAAAGTCCACGC
gi|43298 : GTGTCGCGTTAGATTCACACGCACTCCCGACAGTCCACGCTTGCGGA-TCTGC-AGT-GA---TTGTCATGAGATTCACACAC
gi|43299 : GTGTCACGTTAGATTCACACGCACTCCCGATAGCACACGCGCTTAGA-TATGC-AGT--G---GGGTCATGAGTTTCATACG
gi|43300 : GTGTCACGTTAGATTCACACGCACTCCCGATAGTCCACG
gi|43301 : GTGTTACGTTAGATTCACACGCACTCCCGATAGTCC------GCAGA-TTCACACG-----------CGTAAAATTCACACGC
gi|43302 : GTGCCACGTTAGATTCACACGCACTGTCGATAGTACACGAGTATCAA-TCTAC-TGT-
gi|43303 : GTGTCACGTTAGATTCACACGCACTACGGTAAGTCCACGC
gi|43304 : GTGTCACGTTAGATTCACAAGCACTACGGAAAGTCCACGC
gi|43305 : GTGTCACGTTATATTCACACGTACTACGGAAAGTCCACGCAT
gi|43306 : GTGTCACGTTATATTCACAGGCACTACGGAAAGTCCACGCtatgggt
gi|43307 : GTGTCACGTTATATTCACACGCACTACGGAAAGTCCACACtttgtgggt
gi|43308 : TGTCACGTTAGATTCACACGCACTACGGAAAGTCCACGC
gi|43309 : TCACGTTAGATTCACACGCACTACCGAAAGCCCACGC
Alignments
lowQualScore : 111111
lowQualScore : 1 0 1 4 4 888888
lowQualScore : . . . . . ......
lowQualScore : 0 1 0 0 0 888888
consensus : GTGTCACGTTAGATTCACACGCACTNCCGANAGTCCACGCGTGCGGA-TCTGC-CGT-GG---GGGTCATGAGATTCACACGC
Reference ( family-852 ) : GTGTCACGTTAGATTCACACGCACTNCCGANAGTCCACGCGTGCGGA-TCTGC-CGT-GG---GGGTCATGAGATTCACACGC
gi|43291 : GTGTCACGTTAGATTCAGAAGCACTACCGATAGTCCACGCGTGTGGA-TCTGC-CGT-GG---GGGTCATGAGATTCACACGC
gi|43292 : GTGTCACGTTAGATTCACACGCACTCCCGATAGTCCACGCATGTTGATTCTTC-CGT-GG---GGGTCATGAGATTCACACGC
gi|43293 : GTGTCACGTTAGATTCACACGCACTCCCGATAGTCCACGCGTGTGGA-TGTGC-CGT--G---GGGTCATGAGTTTCACATGC
gi|43294 : GTGTCACGTAAGATTCACACGCACTCCTGATAAACCACGCGTGTGGA-TCTGC-CGTGGG---GGGTCATGAGATTCACACGC
gi|43295 : GTGTCACGTTAGATTCACACGTACTCCCGATAGTCTACGCGTGCAGA-TCTGT-CGTAGG---GGGTCATGAGATCCTCACGC
gi|43296 : GTGTTACGTTAGATTCACACGCACTCCCGATAGTCCACGCGTGCGGA-TCTGC-CGT-CATCTGGGTCATGAGTTTCAC
gi|43297 : GTGTCGTGTTAGATTCACACGCACTACGGAAAGTCCACGC
gi|43298 : GTGTCGCGTTAGATTCACACGCACTCCCGACAGTCCACGCTTGCGGA-TCTGC-AGT-GA---TTGTCATGAGATTCACACAC
gi|43299 : GTGTCACGTTAGATTCACACGCACTCCCGATAGCACACGCGCTTAGA-TATGC-AGT--G---GGGTCATGAGTTTCATACG
gi|43300 : GTGTCACGTTAGATTCACACGCACTCCCGATAGTCCACG
gi|43301 : GTGTTACGTTAGATTCACACGCACTCCCGATAGTCC------GCAGA-TTCACACG-----------CGTAAAATTCACACGC
gi|43302 : GTGCCACGTTAGATTCACACGCACTGTCGATAGTACACGAGTATCAA-TCTAC-TGT-
gi|43303 : GTGTCACGTTAGATTCACACGCACTACGGTAAGTCCACGC
gi|43304 : GTGTCACGTTAGATTCACAAGCACTACGGAAAGTCCACGC
gi|43305 : GTGTCACGTTATATTCACACGTACTACGGAAAGTCCACGCAT
gi|43306 : GTGTCACGTTATATTCACAGGCACTACGGAAAGTCCACGCtatgggt
gi|43307 : GTGTCACGTTATATTCACACGCACTACGGAAAGTCCACACtttgtgggt
gi|43308 : TGTCACGTTAGATTCACACGCACTACGGAAAGTCCACGC
gi|43309 : TCACGTTAGATTCACACGCACTACCGAAAGCCCACGC
blockSeqs : C T T A CATCT
blockSeqs : C T . . GGG
blockSeqs : C T . . AGG
blockSeqs : C T . . GG
blockSeqs : C T . . GA
blockSeqs : A A . . G
blockSeqs : C C . . G
blockSeqs : C T . . .
blockSeqs : C T . .
blockSeqs : C T
blockSeqs : G T
blockSeqs : A A
blockSeqs : A A
blockSeqs : A A
blockSeqs : A A
blockSeqs : A A
blockSeqs : A A
blockSeqs : A A
blockSeqCons :
originalCons : GTGTCACGTTAGATTCACACGCACTNCCGANAGTCCACGCGTGCGGA-TCTGC-CGT-GG---GGGTCATGAGATTCACACGC
finalCons : GTGTCACGTTAGATTCACACGCACTNCCGANAGTCCACGCGTGCGGA-TCTGC-CGT-GG---GGGTCATGAGATTCACACGC
Alignments
lowQualScore : 111111
lowQualScore : 1 0 1 4 4 888888
lowQualScore : . . . . . ......
lowQualScore : 0 1 0 0 0 888888
consensus : GTGTCACGTTAGATTCACACGCACTNCCGANAGTCCACGCGTGCGGA-TCTGC-CGT-GG---GGGTCATGAGATTCACACGC
Reference ( family-852 ) : GTGTCACGTTAGATTCACACGCACTNCCGANAGTCCACGCGTGCGGA-TCTGC-CGT-GG---GGGTCATGAGATTCACACGC
gi|43291 : GTGTCACGTTAGATTCAGAAGCACTACCGATAGTCCACGCGTGTGGA-TCTGC-CGT-GG---GGGTCATGAGATTCACACGC
gi|43292 : GTGTCACGTTAGATTCACACGCACTCCCGATAGTCCACGCATGTTGATTCTTC-CGT-GG---GGGTCATGAGATTCACACGC
gi|43293 : GTGTCACGTTAGATTCACACGCACTCCCGATAGTCCACGCGTGTGGA-TGTGC-CGT--G---GGGTCATGAGTTTCACATGC
gi|43294 : GTGTCACGTAAGATTCACACGCACTCCTGATAAACCACGCGTGTGGA-TCTGC-CGTGGG---GGGTCATGAGATTCACACGC
gi|43295 : GTGTCACGTTAGATTCACACGTACTCCCGATAGTCTACGCGTGCAGA-TCTGT-CGTAGG---GGGTCATGAGATCCTCACGC
gi|43296 : GTGTTACGTTAGATTCACACGCACTCCCGATAGTCCACGCGTGCGGA-TCTGC-CGT-CATCTGGGTCATGAGTTTCAC
gi|43297 : GTGTCGTGTTAGATTCACACGCACTACGGAAAGTCCACGC
gi|43298 : GTGTCGCGTTAGATTCACACGCACTCCCGACAGTCCACGCTTGCGGA-TCTGC-AGT-GA---TTGTCATGAGATTCACACAC
gi|43299 : GTGTCACGTTAGATTCACACGCACTCCCGATAGCACACGCGCTTAGA-TATGC-AGT--G---GGGTCATGAGTTTCATACG
gi|43300 : GTGTCACGTTAGATTCACACGCACTCCCGATAGTCCACG
gi|43301 : GTGTTACGTTAGATTCACACGCACTCCCGATAGTCC------GCAGA-TTCACACG-----------CGTAAAATTCACACGC
gi|43302 : GTGCCACGTTAGATTCACACGCACTGTCGATAGTACACGAGTATCAA-TCTAC-TGT-
gi|43303 : GTGTCACGTTAGATTCACACGCACTACGGTAAGTCCACGC
gi|43304 : GTGTCACGTTAGATTCACAAGCACTACGGAAAGTCCACGC
gi|43305 : GTGTCACGTTATATTCACACGTACTACGGAAAGTCCACGCAT
gi|43306 : GTGTCACGTTATATTCACAGGCACTACGGAAAGTCCACGCtatgggt
gi|43307 : GTGTCACGTTATATTCACACGCACTACGGAAAGTCCACACtttgtgggt
gi|43308 : TGTCACGTTAGATTCACACGCACTACGGAAAGTCCACGC
gi|43309 : TCACGTTAGATTCACACGCACTACCGAAAGCCCACGC