lowQualScore : 1 1 11
lowQualScore : 3 2 4 2 2 666666 55 8 2 4444
lowQualScore : . . . . . ...... .. . . ....
lowQualScore : 6 5 5 2 2 444444 77 2 2 7777
consensus : AAA-ATATACCAACTTTCGTTCTGGTGATATCCGTCAT-CC-T------AAATCGTTC-TTATTTC-A----ATGTAAAGGGAG
Reference ( gi|25525 ) : AAA-ATCTACCAACTTTCATTCTGGTGATATCCGGCAT-CC-T------AAATCGTTG-TTTTTTC-A----ATGTAAAGGGAG
gi|25527 : AAA-ATATACCAACTTTCATTCTGGTGATATCTGCCAT-CC-T------AAATCGTTGTTTTTTTC-A----ATGTAAAGGGAG
gi|25526 : AAA-ATATACCAACTTTCATTCTGGTGATATCCATCAT-CC-T------AAATCATTT-TTATTTC-A----ATATAAAGAGAG
gi|25528 : AAA-GTATAGCAACTTTCAATCTGGTGATATCCGTCAA-CC-T------AAATCGTTC-TTATTTC-A----ATGTAAAGGGAG
gi|25529 : AGA-ATATACAAACTTTCATTCTTGTGACATTCGCCGT-CC-T------AAATCGTTA-TTTTTTC-A----ATGTAACGGGAG
gi|25530 : AAATATATATAAACTTTCATTCTGGTAATATCAATCAT-CC-T------AAATGGTTA-TTATATC-A----ATGTAAAGGCAG
gi|25532 : AAA-GTTTACATACTTTCATT-TAGTGATATTCGTCAT-CC-T------AAAACGTTC-TGGTTTC-A----ATGTTAAGGGA
gi|25531 : AAA-GTATATAAACTTTCATTCTGGTGATATCT------------------ATCATTT-TTATTTC-A----ATGTAAATGGGG
gi|25535 : AA-GTTTACCAGCTTTAGTTCATGTGATATCCGTCAT-AA-T------AAATCGTTC-TTATTTC-A----ACGTAAAGGGGG
gi|25534 : AA-ATATGCTAACTTTCGTTCTGGTCATATCTGTAATACC-T------AAATCATTC-TTATTTC-A----ATGTAA
gi|25536 : AA-ATTTATCAATTTCCGTTCTGGTCATATCCATCAT-CCATCATCCGAAACAGTTC-TTATGTC-A----ATGTAAAGGGA
gi|25537 : A-ATATACCAATTTTCATTTTAGTGATATTAATCAT-CA-T------TAATCGTTC-TTTTTTT------ATGTAAATGGAG
gi|25538 : TACCAACTTTCATTCTGGTGATATCCTACAT-CC-T------AAATCGTTC-TCATTCC-A----ATGTAAAGGGGG
gi|25541 : taTACCAATTTTCGTTCAAGTGATATTCGTCAT-CA-T------AAATTGTT--CTTATTC-A----ATATTATGGGAG
gi|25540 : TATCAGTTTTCATGAAAATGATATTTGTCAT-CA-T------AAATCGTCC-TTATTTA-A----ATGTAAAGGGAG
gi|25539 : taATCAACTTTCGTTCAGGTGATATCTGTCAT-CC-T------ACATCGCTA-TTTTTTCTA----ATATAAAGGGAG
gi|25533 : taaCAACCATCACTCTGGTAATATCTGCCAT-CC-T------AAATTGTTC-TTTTTTC-A----ATGTAAAGGGAG
gi|25542 : aaataaaaACTTTTGTTCAGGTGATACCAGTCAT-CA-A------AAATCGGTC-TTATTTC-A----ATATAAAGGGAG
gi|25543 : TTCAGTCAGGTTATATCCGTCAT-CC-T------AAATCGTTC-TTATTTC-AATGTATGTAAAAGGA
Alignments
lowQualScore : 3 0 2 4444 333 2 1 2 4444
lowQualScore : . . . .... ... . . . ....
lowQualScore : 1 9 1 5555 777 1 2 1 5555
consensus : AAA-ATATACCAACTTTCGTTCTGGTGATATCCGTCAT-CC----T---AAATCGTT-CTTATTTC-A----ATGTAAAGGGAG
Reference ( family-851 ) : AAA-ATATACCAACTTTCGTTCTGGTGATATCCGTCAT-CC----T---AAATCGTT-CTTATTTC-A----ATGTAAAGGGAG
gi|25525 : AAA-ATCTACCAACTTTCATTCTGGTGATATCCGGCAT-CC----T---AAATCGTT-GTTTTTTC-A----ATGTAAAGGGAG
gi|25526 : AAA-ATATACCAACTTTCATTCTGGTGATATCCATCAT-CC----T---AAATCATT-TTTATTTC-A----ATATAAAGAGAG
gi|25527 : AAA-ATATACCAACTTTCATTCTGGTGATATCTGCCAT-CC----T---AAATCGTTGTTTTTTTC-A----ATGTAAAGGGAG
gi|25528 : AAA-GTATAGCAACTTTCAATCTGGTGATATCCGTCAA-CC----T---AAATCGTT-CTTATTTC-A----ATGTAAAGGGAG
gi|25529 : AGA-ATATACAAACTTTCATTCTTGTGACATTCGCCGT-CC----T---AAATCGTT-ATTTTTTC-A----ATGTAACGGGAG
gi|25530 : AAATATATATAAACTTTCATTCTGGTAATATCAATCAT-CC----T---AAATGGTT-ATTATATC-A----ATGTAAAGGCAG
gi|25531 : AAA-GTATATAAACTTTCATTCTGGTGATATCT------------------ATCATT-TTTATTTC-A----ATGTAAATGGGG
gi|25532 : AAA-GTTTACATACTTTCATT-TAGTGATATTCGTCAT-CC----T---AAAACGTT-CTGGTTTC-A----ATGTTAAGGGA
gi|25533 : AA-ATAAAACAACCATCACTCTGGTAATATCTGCCAT-CC----T---AAATTGTT-CTTTTTTC-A----ATGTAAAGGGAG
gi|25534 : AA-ATATGCTAACTTTCGTTCTGGTCATATCTGTAATACC----T---AAATCATT-CTTATTTC-A----ATGTAA
gi|25535 : AA-GTTTACCAGCTTTAGTTCATGTGATATCCGTCAT-AA----T---AAATCGTT-CTTATTTC-A----ACGTAAAGGGGG
gi|25536 : AA-ATTTATCAATTTCCGTTCTGGTCATATCCATCAT-CCATCATCCGAAACAGTT-CTTATGTC-A----ATGTAAAGGGA
gi|25537 : A-ATATACCAATTTTCATTTTAGTGATATTAATCAT-CA----T---TAATCGTT-CTT-TTTT-T----ATGTAAATGGAG
gi|25538 : TATACCAACTTTCATTCTGGTGATATCCTACAT-CC----T---AAATCGTT-CTCATTCC-A----ATGTAAAGGGGG
gi|25539 : TAAATCAACTTTCGTTCAGGTGATATCTGTCAT-CC----T---ACATCGCT-ATTTTTTCTA----ATATAAAGGGAG
gi|25540 : TATATCAGTTTTCATGAAAATGATATTTGTCAT-CA----T---AAATCGTC-CTTATTTA-A----ATGTAAAGGGAG
gi|25541 : TACCAATTTTCGTTCAAGTGATATTCGTCAT-CA----T---AAATTGTT-CTTA-TTC-A----ATATTATGGGAG
gi|25542 : ACTTTTGTTCAGGTGATACCAGTCAT-CA----A---AAATCGGT-CTTATTTC-A----ATATAAAGGGAG
gi|25543 : TTCAGTCAGGTTATATCCGTCAT-CC----T---AAATCGTT-CTTATTTC-AATGTATGTAAAAGGA
Alignments
lowQualScore : 3 0 2 4444 333 2 1 2 4444
lowQualScore : . . . .... ... . . . ....
lowQualScore : 1 9 1 5555 777 1 2 1 5555
consensus : AAA-ATATACCAACTTTCGTTCTGGTGATATCCGTCAT-CC----T---AAATCGTT-CTTATTTC-A----ATGTAAAGGGAG
Reference ( family-851 ) : AAA-ATATACCAACTTTCGTTCTGGTGATATCCGTCAT-CC----T---AAATCGTT-CTTATTTC-A----ATGTAAAGGGAG
gi|25525 : AAA-ATCTACCAACTTTCATTCTGGTGATATCCGGCAT-CC----T---AAATCGTT-GTTTTTTC-A----ATGTAAAGGGAG
gi|25526 : AAA-ATATACCAACTTTCATTCTGGTGATATCCATCAT-CC----T---AAATCATT-TTTATTTC-A----ATATAAAGAGAG
gi|25527 : AAA-ATATACCAACTTTCATTCTGGTGATATCTGCCAT-CC----T---AAATCGTTGTTTTTTTC-A----ATGTAAAGGGAG
gi|25528 : AAA-GTATAGCAACTTTCAATCTGGTGATATCCGTCAA-CC----T---AAATCGTT-CTTATTTC-A----ATGTAAAGGGAG
gi|25529 : AGA-ATATACAAACTTTCATTCTTGTGACATTCGCCGT-CC----T---AAATCGTT-ATTTTTTC-A----ATGTAACGGGAG
gi|25530 : AAATATATATAAACTTTCATTCTGGTAATATCAATCAT-CC----T---AAATGGTT-ATTATATC-A----ATGTAAAGGCAG
gi|25531 : AAA-GTATATAAACTTTCATTCTGGTGATATCT------------------ATCATT-TTTATTTC-A----ATGTAAATGGGG
gi|25532 : AAA-GTTTACATACTTTCATT-TAGTGATATTCGTCAT-CC----T---AAAACGTT-CTGGTTTC-A----ATGTTAAGGGA
gi|25533 : AA-ATAAAACAACCATCACTCTGGTAATATCTGCCAT-CC----T---AAATTGTT-CTTTTTTC-A----ATGTAAAGGGAG
gi|25534 : AA-ATATGCTAACTTTCGTTCTGGTCATATCTGTAATACC----T---AAATCATT-CTTATTTC-A----ATGTAA
gi|25535 : AA-GTTTACCAGCTTTAGTTCATGTGATATCCGTCAT-AA----T---AAATCGTT-CTTATTTC-A----ACGTAAAGGGGG
gi|25536 : AA-ATTTATCAATTTCCGTTCTGGTCATATCCATCAT-CCATCATCCGAAACAGTT-CTTATGTC-A----ATGTAAAGGGA
gi|25537 : A-ATATACCAATTTTCATTTTAGTGATATTAATCAT-CA----T---TAATCGTT-CTT-TTTT-T----ATGTAAATGGAG
gi|25538 : TATACCAACTTTCATTCTGGTGATATCCTACAT-CC----T---AAATCGTT-CTCATTCC-A----ATGTAAAGGGGG
gi|25539 : TAAATCAACTTTCGTTCAGGTGATATCTGTCAT-CC----T---ACATCGCT-ATTTTTTCTA----ATATAAAGGGAG
gi|25540 : TATATCAGTTTTCATGAAAATGATATTTGTCAT-CA----T---AAATCGTC-CTTATTTA-A----ATGTAAAGGGAG
gi|25541 : TACCAATTTTCGTTCAAGTGATATTCGTCAT-CA----T---AAATTGTT-CTTA-TTC-A----ATATTATGGGAG
gi|25542 : ACTTTTGTTCAGGTGATACCAGTCAT-CA----A---AAATCGGT-CTTATTTC-A----ATATAAAGGGAG
gi|25543 : TTCAGTCAGGTTATATCCGTCAT-CC----T---AAATCGTT-CTTATTTC-AATGTATGTAAAAGGA
blockSeqs : T A ATCA CCG G A T ATGT
blockSeqs : . . . . . T . .
blockSeqs : . . . . . A . .
blockSeqs : . . . . . T . .
blockSeqs : . . . . . A . .
blockSeqs : . . . . . A . .
blockSeqs : . . . . . G . .
blockSeqs : . . . . . T . .
blockSeqs : . . . . . A . .
blockSeqs : . . . . . A . .
blockSeqs : . . . . . A . .
blockSeqs : . . . . . A . .
blockSeqs : . . . . T . .
blockSeqs : . . . . A . .
blockSeqs : . . . . A . .
blockSeqs : . . . . A . .
blockSeqs : . . . . A . .
blockSeqs : . . . . . . .
blockSeqCons :
originalCons : AAA-ATATACCAACTTTCGTTCTGGTGATATCCGTCAT-CC----T---AAATCGTT-CTTATTTC-A----ATGTAAAGGGAG
finalCons : AAA-ATATACCAACTTTCGTTCTGGTGATATCCGTCAT-CC----T---AAATCGTT-CTTATTTC-A----ATGTAAAGGGAG
Alignments
lowQualScore : 3 0 2 4444 333 2 1 2 4444
lowQualScore : . . . .... ... . . . ....
lowQualScore : 1 9 1 5555 777 1 2 1 5555
consensus : AAA-ATATACCAACTTTCGTTCTGGTGATATCCGTCAT-CC----T---AAATCGTT-CTTATTTC-A----ATGTAAAGGGAG
Reference ( family-851 ) : AAA-ATATACCAACTTTCGTTCTGGTGATATCCGTCAT-CC----T---AAATCGTT-CTTATTTC-A----ATGTAAAGGGAG
gi|25525 : AAA-ATCTACCAACTTTCATTCTGGTGATATCCGGCAT-CC----T---AAATCGTT-GTTTTTTC-A----ATGTAAAGGGAG
gi|25526 : AAA-ATATACCAACTTTCATTCTGGTGATATCCATCAT-CC----T---AAATCATT-TTTATTTC-A----ATATAAAGAGAG
gi|25527 : AAA-ATATACCAACTTTCATTCTGGTGATATCTGCCAT-CC----T---AAATCGTTGTTTTTTTC-A----ATGTAAAGGGAG
gi|25528 : AAA-GTATAGCAACTTTCAATCTGGTGATATCCGTCAA-CC----T---AAATCGTT-CTTATTTC-A----ATGTAAAGGGAG
gi|25529 : AGA-ATATACAAACTTTCATTCTTGTGACATTCGCCGT-CC----T---AAATCGTT-ATTTTTTC-A----ATGTAACGGGAG
gi|25530 : AAATATATATAAACTTTCATTCTGGTAATATCAATCAT-CC----T---AAATGGTT-ATTATATC-A----ATGTAAAGGCAG
gi|25531 : AAA-GTATATAAACTTTCATTCTGGTGATATCT------------------ATCATT-TTTATTTC-A----ATGTAAATGGGG
gi|25532 : AAA-GTTTACATACTTTCATT-TAGTGATATTCGTCAT-CC----T---AAAACGTT-CTGGTTTC-A----ATGTTAAGGGA
gi|25533 : AA-ATAAAACAACCATCACTCTGGTAATATCTGCCAT-CC----T---AAATTGTT-CTTTTTTC-A----ATGTAAAGGGAG
gi|25534 : AA-ATATGCTAACTTTCGTTCTGGTCATATCTGTAATACC----T---AAATCATT-CTTATTTC-A----ATGTAA
gi|25535 : AA-GTTTACCAGCTTTAGTTCATGTGATATCCGTCAT-AA----T---AAATCGTT-CTTATTTC-A----ACGTAAAGGGGG
gi|25536 : AA-ATTTATCAATTTCCGTTCTGGTCATATCCATCAT-CCATCATCCGAAACAGTT-CTTATGTC-A----ATGTAAAGGGA
gi|25537 : A-ATATACCAATTTTCATTTTAGTGATATTAATCAT-CA----T---TAATCGTT-CTT-TTTT-T----ATGTAAATGGAG
gi|25538 : TATACCAACTTTCATTCTGGTGATATCCTACAT-CC----T---AAATCGTT-CTCATTCC-A----ATGTAAAGGGGG
gi|25539 : TAAATCAACTTTCGTTCAGGTGATATCTGTCAT-CC----T---ACATCGCT-ATTTTTTCTA----ATATAAAGGGAG
gi|25540 : TATATCAGTTTTCATGAAAATGATATTTGTCAT-CA----T---AAATCGTC-CTTATTTA-A----ATGTAAAGGGAG
gi|25541 : TACCAATTTTCGTTCAAGTGATATTCGTCAT-CA----T---AAATTGTT-CTTA-TTC-A----ATATTATGGGAG
gi|25542 : ACTTTTGTTCAGGTGATACCAGTCAT-CA----A---AAATCGGT-CTTATTTC-A----ATATAAAGGGAG
gi|25543 : TTCAGTCAGGTTATATCCGTCAT-CC----T---AAATCGTT-CTTATTTC-AATGTATGTAAAAGGA