lowQualScore : 1 4 6 33 777 1 9 333 2 33 2
lowQualScore : . . . .. ... . . ... . .. .
lowQualScore : 0 2 7 11 222 3 4 999 7 22 4
consensus : AAAACGATCCTGTCTAGGGCCACGTT-AAA--AGCATAAAAN--CGATGATATTTT---AAAATA--GAT-GTCTCCACCAATCATC
Reference ( gi|97719 ) : AAAACGATCCTGTCTAGGGCCACGTT-AAA--AGCATAAAAT--CGATGATATGTT---AAAATA--GAT-GTCTCCACCAATCATC
gi|97721 : AAAATAATCCTGTCTAGGGCCACGTT-AAA--AGCATAAAAT--TGATGAAATTTT---AAAATA--GAT-GTCTCCACCAATCATC
gi|97723 : AAAACAATCCTGTCTAGGATCACGTT-AAA--AGCATAAAAT--CGATGATATTTT---AAAATA--GAT-GTCTCTACTTATCATC
gi|97724 : AAAACAATCCTGTCTAGGATCACGCT-AAA--AGCATAAAAT--CGATGAAATTTT---AAAATA--GAT-GTCTCTACCAGTCATC
gi|97718 : AAAACGATCCTGTCTAGGGCCACGTTTAAA--AGCATAAAAA--CGATGATCCTTT---AAAATA--GAT-GACTCCATCAATCATC
gi|97726 : AAAAAAATCCTGTCTAGGGACATGTT-AAA--AGCATTAAAT--CGATGAAATTTT---AAAATA--GAC-GTCTCCACCAATCATC
gi|97725 : AAAACGATCCTGTCTAGAGCCACATT-ACA--AGCATAAAAC--AAATGAAATTTT---AAAATA--GAT-GTCTCTACCAATTATC
gi|97728 : AAAACAATCTTGTCTAGGGTCACGTT-AAA--ATCATAAAAT--TGATGAAATTTT---AAAATAACAAT-TTCTCTACCAATCACC
gi|97727 : AAAACAATCCTTTCTAGGGTCACGTT-AAA--AGCATAAAAA--CGACGATCCTTT---AATGAA--GAT-GGCTCCATTAATCA
gi|97720 : AAAACGACCCTTTTTAACGCCACGTT-AAA--AACATAAAAA--CGATGATAGGTT---AAAA
gi|97729 : AAAACGACCCTTTTTAACACCACGTT-AAA--AACATAAAAA--CGATGATAGGTT---AAAA-----AT-CCCTCCAatcactctac
gi|97722 : AAAACAACCCTTTCTAATGCCACGTT-AAA--AGCATAAAAG--CGAT--T-TGTT---AAAA-----AT-CCCTCCA
gi|97730 : AAAACAACCCT-TTTAATGCCACATT-AAA--AGCATAAAAA--CAATGATTTGTT---AAAA-----AT-CCCTCCA
gi|97731 : AAACAATCCTTTCTAGGGTCACATTTAAA--AGCATAATAT--CAATGATATTTT---AAAATA--GAT-GTCTCCACCAATCACC
gi|97733 : AAACAGTCATTTTTAGGGCCACGTT-AAA--A-CATAAAAC--CAATGATATTTT---AAGATA--TATGGTCTCCACCAATCATC
gi|97732 : AAACGATCCTGTTTAGGGCCAAATTTAAA--AGCATAAAAA--AGATGATCCTTT---AATATA--GAC-GACTCCATCAATCATC
gi|97734 : AAACAATCTCATCTAGGGTCACTTT-AAACAAGCATAGA-T--CAATGGTGTTTT---AAAATA--GAT-TTCTCCATTAAACATC
gi|97735 : TCCTTTCTAGGGTCATTTT-AAA--AGCATAAAAT--CAATGATATTTTAAAAAAAAA--GGT-GTCTCTACCAATCATC
gi|97736 : TT-AAA--AGCATAAAAAAACGATGATCCTTT---AAAATA--GAT-GGCTCCACCAATCATC
Alignments
lowQualScore : 0 3 6 22 333 2 333 2 33 2
lowQualScore : . . . .. ... . ... . .. .
lowQualScore : 4 4 3 99 999 1 777 1 11 2
consensus : AAAACGATCCTGTCTAGGGCCACGTT-AAA--AGCATAAAAN--CGATGATATT-TT---AAAATA--GAT-GTCTCCACCAATCATC
Reference ( family-844 ) : AAAACGATCCTGTCTAGGGCCACGTT-AAA--AGCATAAAAN--CGATGATATT-TT---AAAATA--GAT-GTCTCCACCAATCATC
gi|97718 : AAAACGATCCTGTCTAGGGCCACGTTTAAA--AGCATAAAAA--CGATGATCCT-TT---AAAATA--GAT-GACTCCATCAATCATC
gi|97719 : AAAACGATCCTGTCTAGGGCCACGTT-AAA--AGCATAAAAT--CGATGATATG-TT---AAAATA--GAT-GTCTCCACCAATCATC
gi|97720 : AAAACGACCCTTTTTAACGCCACGTT-AAA--AACATAAAAA--CGATGATAGG-TT---AAAA
gi|97721 : AAAATAATCCTGTCTAGGGCCACGTT-AAA--AGCATAAAAT--TGATGAAATT-TT---AAAATA--GAT-GTCTCCACCAATCATCatcactctac
gi|97722 : AAAACAACCCTTTCTAATGCCACGTT-AAA--AGCATAAAAG--CGAT----TTGTT---AAAA-----AT-CCCTCCA
gi|97723 : AAAACAATCCTGTCTAGGATCACGTT-AAA--AGCATAAAAT--CGATGATATT-TT---AAAATA--GAT-GTCTCTACTTATCATC
gi|97724 : AAAACAATCCTGTCTAGGATCACGCT-AAA--AGCATAAAAT--CGATGAAATT-TT---AAAATA--GAT-GTCTCTACCAGTCATC
gi|97725 : AAAACGATCCTGTCTAGAGCCACATT-ACA--AGCATAAAAC--AAATGAAATT-TT---AAAATA--GAT-GTCTCTACCAATTATC
gi|97726 : AAAAAAATCCTGTCTAGGGACATGTT-AAA--AGCATTAAAT--CGATGAAATT-TT---AAAATA--GAC-GTCTCCACCAATCATC
gi|97727 : AAAACAATCCTTTCTAGGGTCACGTT-AAA--AGCATAAAAA--CGACGATCCT-TT---AATGAA--GAT-GGCTCCATTAATCA
gi|97728 : AAAACAATCTTGTCTAGGGTCACGTT-AAA--ATCATAAAAT--TGATGAAATT-TT---AAAATAACAAT-TTCTCTACCAATCACC
gi|97729 : AAAACGACCCTTTTTAACACCACGTT-AAA--AACATAAAAA--CGATGATAGG-TT---AAAA-----AT-CCCTCCA
gi|97730 : AAAACAACCCT-TTTAATGCCACATT-AAA--AGCATAAAAA--CAATGATTTG-TT---AAAA-----AT-CCCTCCA
gi|97731 : AAACAATCCTTTCTAGGGTCACATTTAAA--AGCATAATAT--CAATGATATT-TT---AAAATA--GAT-GTCTCCACCAATCACC
gi|97732 : AAACGATCCTGTTTAGGGCCAAATTTAAA--AGCATAAAAA--AGATGATCCT-TT---AATATA--GAC-GACTCCATCAATCATC
gi|97733 : AAACAGTCATTTTTAGGGCCACGTT-AAA--A-CATAAAAC--CAATGATATT-TT---AAGATA--TATGGTCTCCACCAATCATC
gi|97734 : AAACAATCTCATCTAGGGTCACTTT-AAACAAGCATAGA-T--CAATGGTGTT-TT---AAAATA--GAT-TTCTCCATTAAACATC
gi|97735 : TCCTTTCTAGGGTCATTTT-AAA--AGCATAAAAT--CAATGATATT-TTAAAAAAAAA--GGT-GTCTCTACCAATCATC
gi|97736 : TT-AAA--AGCATAAAAAAACGATGATCCT-TT---AAAATA--GAT-GGCTCCACCAATCATC
Alignments
lowQualScore : 0 3 6 22 333 2 333 2 33 2
lowQualScore : . . . .. ... . ... . .. .
lowQualScore : 4 4 3 99 999 1 777 1 11 2
consensus : AAAACGATCCTGTCTAGGGCCACGTT-AAA--AGCATAAAAN--CGATGATATT-TT---AAAATA--GAT-GTCTCCACCAATCATC
Reference ( family-844 ) : AAAACGATCCTGTCTAGGGCCACGTT-AAA--AGCATAAAAN--CGATGATATT-TT---AAAATA--GAT-GTCTCCACCAATCATC
gi|97718 : AAAACGATCCTGTCTAGGGCCACGTTTAAA--AGCATAAAAA--CGATGATCCT-TT---AAAATA--GAT-GACTCCATCAATCATC
gi|97719 : AAAACGATCCTGTCTAGGGCCACGTT-AAA--AGCATAAAAT--CGATGATATG-TT---AAAATA--GAT-GTCTCCACCAATCATC
gi|97720 : AAAACGACCCTTTTTAACGCCACGTT-AAA--AACATAAAAA--CGATGATAGG-TT---AAAA
gi|97721 : AAAATAATCCTGTCTAGGGCCACGTT-AAA--AGCATAAAAT--TGATGAAATT-TT---AAAATA--GAT-GTCTCCACCAATCATCatcactctac
gi|97722 : AAAACAACCCTTTCTAATGCCACGTT-AAA--AGCATAAAAG--CGAT----TTGTT---AAAA-----AT-CCCTCCA
gi|97723 : AAAACAATCCTGTCTAGGATCACGTT-AAA--AGCATAAAAT--CGATGATATT-TT---AAAATA--GAT-GTCTCTACTTATCATC
gi|97724 : AAAACAATCCTGTCTAGGATCACGCT-AAA--AGCATAAAAT--CGATGAAATT-TT---AAAATA--GAT-GTCTCTACCAGTCATC
gi|97725 : AAAACGATCCTGTCTAGAGCCACATT-ACA--AGCATAAAAC--AAATGAAATT-TT---AAAATA--GAT-GTCTCTACCAATTATC
gi|97726 : AAAAAAATCCTGTCTAGGGACATGTT-AAA--AGCATTAAAT--CGATGAAATT-TT---AAAATA--GAC-GTCTCCACCAATCATC
gi|97727 : AAAACAATCCTTTCTAGGGTCACGTT-AAA--AGCATAAAAA--CGACGATCCT-TT---AATGAA--GAT-GGCTCCATTAATCA
gi|97728 : AAAACAATCTTGTCTAGGGTCACGTT-AAA--ATCATAAAAT--TGATGAAATT-TT---AAAATAACAAT-TTCTCTACCAATCACC
gi|97729 : AAAACGACCCTTTTTAACACCACGTT-AAA--AACATAAAAA--CGATGATAGG-TT---AAAA-----AT-CCCTCCA
gi|97730 : AAAACAACCCT-TTTAATGCCACATT-AAA--AGCATAAAAA--CAATGATTTG-TT---AAAA-----AT-CCCTCCA
gi|97731 : AAACAATCCTTTCTAGGGTCACATTTAAA--AGCATAATAT--CAATGATATT-TT---AAAATA--GAT-GTCTCCACCAATCACC
gi|97732 : AAACGATCCTGTTTAGGGCCAAATTTAAA--AGCATAAAAA--AGATGATCCT-TT---AATATA--GAC-GACTCCATCAATCATC
gi|97733 : AAACAGTCATTTTTAGGGCCACGTT-AAA--A-CATAAAAC--CAATGATATT-TT---AAGATA--TATGGTCTCCACCAATCATC
gi|97734 : AAACAATCTCATCTAGGGTCACTTT-AAACAAGCATAGA-T--CAATGGTGTT-TT---AAAATA--GAT-TTCTCCATTAAACATC
gi|97735 : TCCTTTCTAGGGTCATTTT-AAA--AGCATAAAAT--CAATGATATT-TTAAAAAAAAA--GGT-GTCTCTACCAATCATC
gi|97736 : TT-AAA--AGCATAAAAAAACGATGATCCT-TT---AAAATA--GAT-GGCTCCACCAATCATC
blockSeqs : G T CA AAA G AAA T AC G
blockSeqs : T T . T . . T . .
blockSeqs : G . . A . . T . .
blockSeqs : T . . T . . T . .
blockSeqs : G . . G . . T . .
blockSeqs : G . . T . . T . .
blockSeqs : G . . T . . A . .
blockSeqs : G . . C . . T . .
blockSeqs : T . . T . . T . .
blockSeqs : G . . A . . T . .
blockSeqs : T . . T . . T . .
blockSeqs : T . . A . . T . .
blockSeqs : G . . A . . A . .
blockSeqs : T . . T . . T . .
blockSeqs : A . . A . . . . .
blockSeqs : T . . C . . . . .
blockSeqs : . . . T . . . . .
blockSeqs : . . T . .
blockSeqCons :
originalCons : AAAACGATCCTGTCTAGGGCCACGTT-AAA--AGCATAAAAN--CGATGATATT-TT---AAAATA--GAT-GTCTCCACCAATCATC
finalCons : AAAACGATCCTGTCTAGGGCCACGTT-AAA--AGCATAAAAN--CGATGATATT-TT---AAAATA--GAT-GTCTCCACCAATCATC
Alignments
lowQualScore : 0 3 6 22 333 2 333 2 33 2
lowQualScore : . . . .. ... . ... . .. .
lowQualScore : 4 4 3 99 999 1 777 1 11 2
consensus : AAAACGATCCTGTCTAGGGCCACGTT-AAA--AGCATAAAAN--CGATGATATT-TT---AAAATA--GAT-GTCTCCACCAATCATC
Reference ( family-844 ) : AAAACGATCCTGTCTAGGGCCACGTT-AAA--AGCATAAAAN--CGATGATATT-TT---AAAATA--GAT-GTCTCCACCAATCATC
gi|97718 : AAAACGATCCTGTCTAGGGCCACGTTTAAA--AGCATAAAAA--CGATGATCCT-TT---AAAATA--GAT-GACTCCATCAATCATC
gi|97719 : AAAACGATCCTGTCTAGGGCCACGTT-AAA--AGCATAAAAT--CGATGATATG-TT---AAAATA--GAT-GTCTCCACCAATCATC
gi|97720 : AAAACGACCCTTTTTAACGCCACGTT-AAA--AACATAAAAA--CGATGATAGG-TT---AAAA
gi|97721 : AAAATAATCCTGTCTAGGGCCACGTT-AAA--AGCATAAAAT--TGATGAAATT-TT---AAAATA--GAT-GTCTCCACCAATCATCatcactctac
gi|97722 : AAAACAACCCTTTCTAATGCCACGTT-AAA--AGCATAAAAG--CGAT----TTGTT---AAAA-----AT-CCCTCCA
gi|97723 : AAAACAATCCTGTCTAGGATCACGTT-AAA--AGCATAAAAT--CGATGATATT-TT---AAAATA--GAT-GTCTCTACTTATCATC
gi|97724 : AAAACAATCCTGTCTAGGATCACGCT-AAA--AGCATAAAAT--CGATGAAATT-TT---AAAATA--GAT-GTCTCTACCAGTCATC
gi|97725 : AAAACGATCCTGTCTAGAGCCACATT-ACA--AGCATAAAAC--AAATGAAATT-TT---AAAATA--GAT-GTCTCTACCAATTATC
gi|97726 : AAAAAAATCCTGTCTAGGGACATGTT-AAA--AGCATTAAAT--CGATGAAATT-TT---AAAATA--GAC-GTCTCCACCAATCATC
gi|97727 : AAAACAATCCTTTCTAGGGTCACGTT-AAA--AGCATAAAAA--CGACGATCCT-TT---AATGAA--GAT-GGCTCCATTAATCA
gi|97728 : AAAACAATCTTGTCTAGGGTCACGTT-AAA--ATCATAAAAT--TGATGAAATT-TT---AAAATAACAAT-TTCTCTACCAATCACC
gi|97729 : AAAACGACCCTTTTTAACACCACGTT-AAA--AACATAAAAA--CGATGATAGG-TT---AAAA-----AT-CCCTCCA
gi|97730 : AAAACAACCCT-TTTAATGCCACATT-AAA--AGCATAAAAA--CAATGATTTG-TT---AAAA-----AT-CCCTCCA
gi|97731 : AAACAATCCTTTCTAGGGTCACATTTAAA--AGCATAATAT--CAATGATATT-TT---AAAATA--GAT-GTCTCCACCAATCACC
gi|97732 : AAACGATCCTGTTTAGGGCCAAATTTAAA--AGCATAAAAA--AGATGATCCT-TT---AATATA--GAC-GACTCCATCAATCATC
gi|97733 : AAACAGTCATTTTTAGGGCCACGTT-AAA--A-CATAAAAC--CAATGATATT-TT---AAGATA--TATGGTCTCCACCAATCATC
gi|97734 : AAACAATCTCATCTAGGGTCACTTT-AAACAAGCATAGA-T--CAATGGTGTT-TT---AAAATA--GAT-TTCTCCATTAAACATC
gi|97735 : TCCTTTCTAGGGTCATTTT-AAA--AGCATAAAAT--CAATGATATT-TTAAAAAAAAA--GGT-GTCTCTACCAATCATC
gi|97736 : TT-AAA--AGCATAAAAAAACGATGATCCT-TT---AAAATA--GAT-GGCTCCACCAATCATC