lowQualScore : 111 1111111
lowQualScore : 3 2 2 7 2 2 1 333 444 0 44 2 4 0 8 2 2 66 33 666 3 2 999 2 2 9999 1 2 2 1111111 5 0
lowQualScore : . . . . . . . ... ... . .. . . . . . . .. .. ... . . ... . . .... . . . ....... . .
lowQualScore : 0 4 4 6 2 2 3 999 111 1 99 5 6 3 0 2 4 99 11 444 7 2 999 2 8 2222 6 4 4 8888888 2 8
consensus : TCGAGTTNGTGCTTAAA-AG-CATTCAGAGA-AGAG---G---CTTGTCTTGTTTCAAGTGGG-AGANTGTTCCANTCACGGACAACGGANGG-AATGAAGGAATT-NGA--GTA--NAGNGC-TGTTCTCGAAGTNG-GAATTTGNA---NGTCATTACTATTTCTGAGGTTGTACGNGGAAT------TTNCATTTGTAAGAGAAGGA
Reference ( gi|25729 ) : TCGAGTTTATGTTTAAA-AG-CATTCAGAGA-AGAG---G---CTTGTCTTGTTTCAAGTGGG-AGAGTGTTCCAGTCACGGACAACGGAAGG-AATAAAGGAATT-TGA--GTA--CAGAGC-TGTTCTTGAAGAAG-GAATTTGAA---TATTATTATTATTTCTGAGGTTGTACGTGGAAC------TTGCATTTGTAAGAGAAGGA
gi|25728 : TCGAGTTTATGTTTAAA-AG-CATTCAGAGA-AGAG---G---CTTGTCTTGTTTCAAGTGGG-AGAGTGTTCCAGTCACGGACAACGGAAGG-AATAAAGGAATT-TGA--GTA--CAGAGC-TGTTCTTGAAGAAG-GAATTTGAA---TATTATTATTATTTCTGAGGTTGTACGTGGAAC------TTGCATTTGTAAGAGAAGGA
gi|25730 : TCGAGTTTATGTTTAAA-AG-CATTCAGAGA-AGAG---G---CTTGTCTTGTTTCAAGTGGG-AGAGTGTTCCAGTCACGGACAACGGAAGG-AATAAAGGAATT-TGA--GTA--CAGAAC-TGTTCTTGAAGAAG-GAATTTGAA---TATTATTATTATTTCTGAGGTTGTACGCGGAACTTGCATTTGCATTTGTAAGAGAAGGA
gi|25731 : TCAAGTTGGTGTTTGAA-AG-CACTCAGAGA-AGAA---G---CTTGTCTTGTTTCAAGTGGG-AGAGTGTTCCATTCATGGACAATGGAAGG-AATGAAGGAATT-TGA--GTA--CAGAGT-TGTTCTTGAAGTAG-GGATTTGAA---TATTGTTATTATTTATGAGGTTGTACGTGGAGT------TTGCATTTGTAAGAGAAGGA
gi|25732 : TCGAGTTTATGTTTAAA-AG-CACTCAGAGA-AGAG---
gi|25733 : TTGAATTTATGTTTAAA-AA-CATTCAGAGA-AGAG---A---CTTGCCTTGTTTCAAGTGGG-AGAGTGTTCCAGTCACAGACAACGGATGG-AATGAAGGCATT-TGG--GTA--CAGGGC-TGTTCTTGAAG-AG-GAATTTGAATATTATTATTATTATTTCTGAGGTTtcactaataaagaattagaattagaacaagaataggcttgtcttgtttcaaatgggagagtgttccagtcacggacaatggaatgaatgaaggagtttgagtacagagctattcttgaagaagcaatttgaatattattactatttctgaggttgtacgtggaacttacatttgttagagaagga
gi|25734 : TCGAGTTTATGTTTAAA-AG-CATTCAGAGA-AGAG---G---CTTGTCTTGTTTCAAGTGGG-AGAGTGTTCGAGTCACGGACAACGGAAGG-AATAAAGGAATT-TGA--GTA--CAGAGC-TGTTTTTGAAGAAGTCAGTTTGGA---
gi|25735 : TCAAGTTGGTGTTTAAA-AT-CATCCAGAGA-AGAA---GATGCTTGTATTTTTTCTAGTGGA-ATAGTGTTCCATTCACGGAC-------GG-AATATAAGCATT-TGA--GTA--CAAAGT-TGTACTCAAAGATG-GGATTTGAA---TATTGTTATCATTTCTGAGGTTGTACGTGGAAA------ATACATTTATAAGAGGAAGA
gi|25737 : AGCTGGTGCTTAAA-GG-CATTGATAGA-AACG---G---CTTGTCTTGTTTCAATAGGT-AGATTGTTCCAATCACGGACAACAGATGG-CATGAAAGAATT-ATA--GTA--GAGCGC-TGTTCTCGAACTTG-GAATTTGTA---GGTCATAACTATTTCTGAGATTATACGGGGAAT------TTTCA
gi|25736 : AGCTGGTGCTTAAA-GG-CATTGATAGA-AACG---G---CTTGTCTTGTTTCAATAGGT-AGATTGTTCCAATCACGGACAACAGATGG-CATGAAAGAATT-ATA--GTA--GAGCGC-TGTTCTCGAACTTG-GAATTTGTA---GGTCATAACTATTTCTGAGATTATACGGGGAAT------TTTCACCTATTAGGGATGG
gi|25738 : AGCTGGTGCTTAAA-GG-CATTGATAGA-AACG---G---CTCGTTTTGTTT-AAATAGGTAGATTGTTCCAATCACGGACAACAGATGG-CATGAAAGAATT-ATA--GTA--GAGCGC-TGTTCTCGAAATTG-GAATTTGTA---GGTCATAACTATTTCTGAGGTTATACGGGGAAT------TTTCA
gi|25739 : AGCTGGTGCTTAAA-GG-CATTGATAGA-AACG---G----TTGTCTTGTTTCAATAGGT-AGATTGTTCCAATCACGGACAACAGATGG-CATGAAAGAATT-ATA--GTA--GAGCGC-TGTTCTCGAACTTG-GAATTTGTA---GGTCATAACTATTTCTGAGATTATACGGGGAAT------TTTCA
gi|25740 : TTATGCTTAAA-GG-GAAT----GATAGAGTCTG---TTTGTTTTGTTTCGATTGGA-TGATTATTCCCTTCGCGAACAACATATGGCAATAACG-AATTATGA---TA--GAGTGC-TGTTCTTGAACTTG-GAAATTGTA---GGTCTTCACTATTTCTGAGATTAT
gi|25741 : ATGCTTAAA-TGTCGTT--AAAA-ATGG---G---CGTGTCTAGTTTCTAGTTGT-CGATTGTTCCATTCGCAGACAACAGACAG-AAGGAACGAATA-AGA--ATA--AAGTAT-TGTTCTTGAAATCG-GGATTTGAA---TA
gi|25742 : TGTTTAAA-AG-CATTCAGAGA-AGAG---G---TGAGTCATGTTTCAAGCAGG-AGAGTATCACAATCATGGACAATGGATGG-AATGAAGTCATT-TGA--GTA--CAGGGT-TGTTCTTGATGCAG-GAATTTTAG-------------------------GCACGTTGAAT------TTGCATTTGTAAGAGCAGGA
gi|25743 : TGCTTAAA-AG-CATTGATAGA-AACG---G---CTCGTCTTGTTTC-AGTAGGTAGATTGTCCCAATCACGGACAACAGATGG-CATGAAATAATT-ATA--GTA--GAGTGC-TGTTCTCGAACTTC-GAGTTTGTA---GGTCATTACTATTTCTGAAAGTATACGGGGAAT------TT
gi|25744 : TGCTTAAATAT-TATT-AAAGA-AGTA---G---CTTGTCTAGTTTCAAGTGGA-AGATTATTCCATTCCCGGATAACAGACGG-AAGGAACGAATT-GGA--GT----AGAGT-TGTTCTTGAAATTG-GGAACTGAA---AATCGTTGCTATTTCTGAGAATGTATGTAGAGT------TATCACTTGT
gi|25745 : TTAAA-GG-CATTGATAGA-AACG---G---CTCGTATTGTTTCAATAGGT-AGATTGTTCCAATCACGGACAACAGATGG-CATTAAAGAATT-ATA--GTA--GAGCGC-TGTTCTCGAACTTG-GAATTTGTA---GGTCATAACTATTTCTGAGAGTATACGGGGAAT------TTTCACCTATTTGGGATGGA
gi|25732 : AGA-ATAG---G---CTTGTCTTGTTTCAAATGGG-AGAGTGTTCCAGTCACGGACAATGGAATG-AATGAAGGAGTT-TGA--GTA--CAGAGC-TATTCTTGAAGAAG-CAATTTGAA---TATTATTACTATTTCTGAGGTTGTACGTGGAAC------TTACATTTGTTAGAGAAGGA
gi|25746 : tcgagtttatgtttaaaagcactcagagaagagtcactaataaagaattagaattagaacaTTTTATTTCATCTGTA-AAAGTGTTCCATTCCCGTATAGAAGAAGG-AAAGAAAGAATCATAATGGTAATTAGAGCGTGTATTTAACG-------TTTGGA---TATTATTAGAGTTTCTAAGATTATACCTGGA
Alignments
lowQualScore : 1 2 2 6 1 2 0 333 333 4 1 1 1 2 0 11 333 333 1 2 0 666 1 5555 0 1 777777 1
lowQualScore : . . . . . . . ... ... . . . . . . .. ... ... . . . ... . .... . . ...... .
lowQualScore : 0 2 2 7 5 1 7 777 999 2 0 0 7 1 7 55 777 999 0 1 1 777 8 7777 1 0 777777 0
consensus : TCGAGTTNGTGCTTAAA-AG-CATTCAGAGA-AGAG---G---CTTGTCTTGTTTCAAGTGGG-AGAGTGTTCCANTCACGGACAACGGANGG-AATGAAGGAATTNGA---GTA--NAGNGC-TGTTCTCGAAGTNGGAATTTGNA---NGTCATTACTATTTCTGAGGTTGTACGTGGA------ATTTNCATTTGTAAGAGAAGGA
Reference ( family-840 ) : TCGAGTTNGTGCTTAAA-AG-CATTCAGAGA-AGAG---G---CTTGTCTTGTTTCAAGTGGG-AGANTGTTCCANTCACGGACAACGGANGG-AATGAAGGAATTNGA---GTA--NAGNGC-TGTTCTCGAAGTNGGAATTTGNA---NGTCATTACTATTTCTGAGGTTGTACGNGGA------ATTTNCATTTGTAAGAGAAGGA
gi|25728 : TCGAGTTTATGTTTAAA-AG-CATTCAGAGA-AGAG---G---CTTGTCTTGTTTCAAGTGGG-AGAGTGTTCCAGTCACGGACAACGGAAGG-AATAAAGGAATTTGA---GTA--CAGAGC-TGTTCTTGAAGAAGGAATTTGAA---TATTATTATTATTTCTGAGGTTGTACGTGGA------ACTTGCATTTGTAAGAGAAGGA
gi|25729 : TCGAGTTTATGTTTAAA-AG-CATTCAGAGA-AGAG---G---CTTGTCTTGTTTCAAGTGGG-AGAGTGTTCCAGTCACGGACAACGGAAGG-AATAAAGGAATTTGA---GTA--CAGAGC-TGTTCTTGAAGAAGGAATTTGAA---TATTATTATTATTTCTGAGGTTGTACGTGGA------ACTTGCATTTGTAAGAGAAGGA
gi|25730 : TCGAGTTTATGTTTAAA-AG-CATTCAGAGA-AGAG---G---CTTGTCTTGTTTCAAGTGGG-AGAGTGTTCCAGTCACGGACAACGGAAGG-AATAAAGGAATTTGA---GTA--CAGAAC-TGTTCTTGAAGAAGGAATTTGAA---TATTATTATTATTTCTGAGGTTGTACGCGGAACTTGCATTTGCATTTGTAAGAGAAGGA
gi|25731 : TCAAGTTGGTGTTTGAA-AG-CACTCAGAGA-AGAA---G---CTTGTCTTGTTTCAAGTGGG-AGAGTGTTCCATTCATGGACAATGGAAGG-AATGAAGGAATTTGA---GTA--CAGAGT-TGTTCTTGAAGTAGGGATTTGAA---TATTGTTATTATTTATGAGGTTGTACGTGGA------GTTTGCATTTGTAAGAGAAGGA
gi|25732 : TCGAGTTTATGTTTAAA-AG-CACTCAGAGA-AGAG---
gi|25732 : AGA-ATAG---G---CTTGTCTTGTTTCAAATGGG-AGAGTGTTCCAGTCACGGACAATGGAATG-AATGAAGGAGTTTGA---GTA--CAGAGC-TATTCTTGAAGAAGCAATTTGAA---TATTATTACTATTTCTGAGGTTGTACGTGGA------ACTTACATTTGTTAGAGAAGGAtcactaataaagaattagaattagaacaagaataggcttgtcttgtttcaaatgggagagtgttccagtcacggacaatggaatgaatgaaggagtttgagtacagagctattcttgaagaagcaatttgaatattattactatttctgaggttgtacgtggaacttacatttgttagagaagga
gi|25733 : tcgagtttatgtttaaaagcactcagagaagagtcactaataaagaattagaattagaacaTTGAATTTATGTTTAAA-AA-CATTCAGAGA-AGAG---A---CTTGCCTTGTTTCAAGTGGG-AGAGTGTTCCAGTCACAGACAACGGATGG-AATGAAGGCATTTGG---GTA--CAGGGC-TGTTCTTGAAG-AGGAATTTGAATATTATTATTATTATTTCTGAGGTT
gi|25734 : TCGAGTTTATGTTTAAA-AG-CATTCAGAGA-AGAG---G---CTTGTCTTGTTTCAAGTGGG-AGAGTGTTCGAGTCACGGACAACGGAAGG-AATAAAGGAATTTGA---GTA--CAGAGC-TGTTTTTGAAG
gi|25735 : TCAAGTTGGTGTTTAAA-AT-CATCCAGAGA-AGAA---GATGCTTGTATTTTTTCTAGTGGA-ATAGTGTTCCATTCACGGAC-------GG-AATATAAGCATTTGA---GTA--CAAAGT-TGTACTCAAAGATGGGATTTGAA---TATTGTTATCATTTCTGAGGTTGTACGTGGA------AAATACATTTATAAGAGGAAGAaagtcagtttgga
gi|25736 : AGCTGGTGCTTAAA-GG-CATTGATAGA-AACG---G---CTTGTCTTGTTTCAATAGGT-AGATTGTTCCAATCACGGACAACAGATGG-CATGAAAGAATTATA---GTA--GAGCGC-TGTTCTCGAACTTGGAATTTGTA---GGTCATAACTATTTCTGAGATTATACGGGGA------ATTTTCACCTATTAGGGATGG
gi|25737 : AGCTGGTGCTTAAA-GG-CATTGATAGA-AACG---G---CTTGTCTTGTTTCAATAGGT-AGATTGTTCCAATCACGGACAACAGATGG-CATGAAAGAATTATA---GTA--GAGCGC-TGTTCTCGAACTTGGAATTTGTA---GGTCATAACTATTTCTGAGATTATACGGGGA------ATTTTCA
gi|25738 : AGCTGGTGCTTAAA-GG-CATTGATAGA-AACG---G---CTCGTTTTGTTT-AAATAGGTAGATTGTTCCAATCACGGACAACAGATGG-CATGAAAGAATTATA---GTA--GAGCGC-TGTTCTCGAAATTGGAATTTGTA---GGTCATAACTATTTCTGAGGTTATACGGGGA------ATTTTCA
gi|25739 : AGCTGGTGCTTAAA-GG-CATTGATAGA-AACG---G----TTGTCTTGTTTCAATAGGT-AGATTGTTCCAATCACGGACAACAGATGG-CATGAAAGAATTATA---GTA--GAGCGC-TGTTCTCGAACTTGGAATTTGTA---GGTCATAACTATTTCTGAGATTATACGGGGA------ATTTTCA
gi|25740 : TTATGCTTAAA-GG-GAAT----GATAGAGTCTG---TTTGTTTTGTTTCGATTGGA-TGATTATTCCCTTCGCGAACAACATATGGCAAT-AACGAATTATG---ATA--GAGTGC-TGTTCTTGAACTTGGAAATTGTA---GGTCTTCACTATTTCTGAGATTAT
gi|25741 : TGCTTAAA-TGTCGTT--AAAA-ATGG---G---CGTGTCTAGTTTCTAGTTGT-CGATTGTTCCATTCGCAGACAACAGACAG-AAGGAACGAATAAGA---ATA--AAGTAT-TGTTCTTGAAATCGGGATTTGAA---
gi|25742 : aTGTTTAAA-AG-CATTCAGAGA-AGAG---G---TGAGTCATGTTTCAAGCAGG-AGAGTATCACAATCATGGACAATGGATGG-AATGAAGTCATTTGA---GTA--CAGGGT-TGTTCTTGATGCAGGAATT------------TTA--------G-----GCACGTTGA------ATTTGCATTTGTAAGAGCAGGAta
gi|25743 : TGCTTAAA-AG-CATTGATAGA-AACG---G---CTCGTCTTGTTTC-AGTAGGTAGATTGTCCCAATCACGGACAACAGATGG-CATGAAATAATTATA---GTA--GAGTGC-TGTTCTCGAACTTCGAGTTTGTA---GGTCATTACTATTTCTGAAAGTATACGGGGA------ATTT
gi|25744 : TGCTTAAATAT-TATT-AAAGA-AGTA---G---CTTGTCTAGTTTCAAGTGGA-AGATTATTCCATTCCCGGATAACAGACGG-AAGGAACGAATTGGA---GTA--GAGT---TGTTCTTGAAATTGGGAACTGAA---AATCGTTGCTATTTCTGAGAATGTATGTAGA------GTTATCACTTGT
gi|25745 : TTAAA-GG-CATTGATAGA-AACG---G---CTCGTATTGTTTCAATAGGT-AGATTGTTCCAATCACGGACAACAGATGG-CATTAAAGAATTATA---GTA--GAGCGC-TGTTCTCGAACTTGGAATTTGTA---GGTCATAACTATTTCTGAGAGTATACGGGGA------ATTTTCACCTATTTGGGATGGA
gi|25746 : TTTTATTTCATCTGTA-AAAGTGTTCCATTCCCGTATAGAAGAAGG-AAAGAAAGAATCATAATGGTAATTAGAGCGTGTATTTAACG------TTTGGA---TATTATTAGAGTTTCTAAGATTATACCTGGA------
Alignments
lowQualScore : 1 2 2 6 1 2 0 333 333 4 1 1 1 2 0 11 333 333 1 2 0 666 1 5555 0 1 777777 1
lowQualScore : . . . . . . . ... ... . . . . . . .. ... ... . . . ... . .... . . ...... .
lowQualScore : 0 2 2 7 5 1 7 777 999 2 8 0 7 1 7 55 777 999 0 1 1 777 8 7777 1 6 777777 0
consensus : TCGAGTTNGTGCTTAAA-AG-CATTCAGAGA-AGAG---G---CTTGTCTTGTTTCAAGTGGG-AGAGTGTTCCANTCACGGACAACGGANGG-AATGAAGGAATTNGA---GTA--NAGNGC-TGTTCTCGAAGTNGGAATTTGNA---NGTCATTACTATTTCTGAGGTTGTACGTGGA------ATTTNCATTTGTAAGAGAAGGA
Reference ( family-840 ) : TCGAGTTNGTGCTTAAA-AG-CATTCAGAGA-AGAG---G---CTTGTCTTGTTTCAAGTGGG-AGAGTGTTCCANTCACGGACAACGGANGG-AATGAAGGAATTNGA---GTA--NAGNGC-TGTTCTCGAAGTNGGAATTTGNA---NGTCATTACTATTTCTGAGGTTGTACGTGGA------ATTTNCATTTGTAAGAGAAGGA
gi|25728 : TCGAGTTTATGTTTAAA-AG-CATTCAGAGA-AGAG---G---CTTGTCTTGTTTCAAGTGGG-AGAGTGTTCCAGTCACGGACAACGGAAGG-AATAAAGGAATTTGA---GTA--CAGAGC-TGTTCTTGAAGAAGGAATTTGAA---TATTATTATTATTTCTGAGGTTGTACGTGGA------ACTTGCATTTGTAAGAGAAGGA
gi|25729 : TCGAGTTTATGTTTAAA-AG-CATTCAGAGA-AGAG---G---CTTGTCTTGTTTCAAGTGGG-AGAGTGTTCCAGTCACGGACAACGGAAGG-AATAAAGGAATTTGA---GTA--CAGAGC-TGTTCTTGAAGAAGGAATTTGAA---TATTATTATTATTTCTGAGGTTGTACGTGGA------ACTTGCATTTGTAAGAGAAGGA
gi|25730 : TCGAGTTTATGTTTAAA-AG-CATTCAGAGA-AGAG---G---CTTGTCTTGTTTCAAGTGGG-AGAGTGTTCCAGTCACGGACAACGGAAGG-AATAAAGGAATTTGA---GTA--CAGAAC-TGTTCTTGAAGAAGGAATTTGAA---TATTATTATTATTTCTGAGGTTGTACGCGGAACTTGCATTTGCATTTGTAAGAGAAGGA
gi|25731 : TCAAGTTGGTGTTTGAA-AG-CACTCAGAGA-AGAA---G---CTTGTCTTGTTTCAAGTGGG-AGAGTGTTCCATTCATGGACAATGGAAGG-AATGAAGGAATTTGA---GTA--CAGAGT-TGTTCTTGAAGTAGGGATTTGAA---TATTGTTATTATTTATGAGGTTGTACGTGGA------GTTTGCATTTGTAAGAGAAGGA
gi|25732 : TCGAGTTTATGTTTAAA-AG-CACTCAGAGA-AGAG---
gi|25732 : AGA-ATAG---G---CTTGTCTTGTTTCAAATGGG-AGAGTGTTCCAGTCACGGACAATGGAATG-AATGAAGGAGTTTGA---GTA--CAGAGC-TATTCTTGAAGAAGCAATTTGAA---TATTATTACTATTTCTGAGGTTGTACGTGGA------ACTTACATTTGTTAGAGAAGGAtcactaataaagaattagaattagaacaagaataggcttgtcttgtttcaaatgggagagtgttccagtcacggacaatggaatgaatgaaggagtttgagtacagagctattcttgaagaagcaatttgaatattattactatttctgaggttgtacgtggaacttacatttgttagagaagga
gi|25733 : tcgagtttatgtttaaaagcactcagagaagagtcactaataaagaattagaattagaacaTTGAATTTATGTTTAAA-AA-CATTCAGAGA-AGAG---A---CTTGCCTTGTTTCAAGTGGG-AGAGTGTTCCAGTCACAGACAACGGATGG-AATGAAGGCATTTGG---GTA--CAGGGC-TGTTCTTGAAG-AGGAATTTGAATATTATTATTATTATTTCTGAGGTT
gi|25734 : TCGAGTTTATGTTTAAA-AG-CATTCAGAGA-AGAG---G---CTTGTCTTGTTTCAAGTGGG-AGAGTGTTCGAGTCACGGACAACGGAAGG-AATAAAGGAATTTGA---GTA--CAGAGC-TGTTTTTGAAG
gi|25735 : TCAAGTTGGTGTTTAAA-AT-CATCCAGAGA-AGAA---GATGCTTGTATTTTTTCTAGTGGA-ATAGTGTTCCATTCACGGAC-------GG-AATATAAGCATTTGA---GTA--CAAAGT-TGTACTCAAAGATGGGATTTGAA---TATTGTTATCATTTCTGAGGTTGTACGTGGA------AAATACATTTATAAGAGGAAGAaagtcagtttgga
gi|25736 : AGCTGGTGCTTAAA-GG-CATTGATAGA-AACG---G---CTTGTCTTGTTTCAATAGGT-AGATTGTTCCAATCACGGACAACAGATGG-CATGAAAGAATTATA---GTA--GAGCGC-TGTTCTCGAACTTGGAATTTGTA---GGTCATAACTATTTCTGAGATTATACGGGGA------ATTTTCACCTATTAGGGATGG
gi|25737 : AGCTGGTGCTTAAA-GG-CATTGATAGA-AACG---G---CTTGTCTTGTTTCAATAGGT-AGATTGTTCCAATCACGGACAACAGATGG-CATGAAAGAATTATA---GTA--GAGCGC-TGTTCTCGAACTTGGAATTTGTA---GGTCATAACTATTTCTGAGATTATACGGGGA------ATTTTCA
gi|25738 : AGCTGGTGCTTAAA-GG-CATTGATAGA-AACG---G---CTCGTTTTGTTT-AAATAGGTAGATTGTTCCAATCACGGACAACAGATGG-CATGAAAGAATTATA---GTA--GAGCGC-TGTTCTCGAAATTGGAATTTGTA---GGTCATAACTATTTCTGAGGTTATACGGGGA------ATTTTCA
gi|25739 : AGCTGGTGCTTAAA-GG-CATTGATAGA-AACG---G----TTGTCTTGTTTCAATAGGT-AGATTGTTCCAATCACGGACAACAGATGG-CATGAAAGAATTATA---GTA--GAGCGC-TGTTCTCGAACTTGGAATTTGTA---GGTCATAACTATTTCTGAGATTATACGGGGA------ATTTTCA
gi|25740 : TTATGCTTAAA-GG-GAAT----GATAGAGTCTG---TTTGTTTTGTTTCGATTGGA-TGATTATTCCCTTCGCGAACAACATATGGCAAT-AACGAATTATG---ATA--GAGTGC-TGTTCTTGAACTTGGAAATTGTA---GGTCTTCACTATTTCTGAGATTAT
gi|25741 : TGCTTAAA-TGTCGTT--AAAA-ATGG---G---CGTGTCTAGTTTCTAGTTGT-CGATTGTTCCATTCGCAGACAACAGACAG-AAGGAACGAATAAGA---ATA--AAGTAT-TGTTCTTGAAATCGGGATTTGAA---
gi|25742 : aTGTTTAAA-AG-CATTCAGAGA-AGAG---G---TGAGTCATGTTTCAAGCAGG-AGAGTATCACAATCATGGACAATGGATGG-AATGAAGTCATTTGA---GTA--CAGGGT-TGTTCTTGATGCAGGAATT------------TTA--------G-----GCACGTTGA------ATTTGCATTTGTAAGAGCAGGAta
gi|25743 : TGCTTAAA-AG-CATTGATAGA-AACG---G---CTCGTCTTGTTTC-AGTAGGTAGATTGTCCCAATCACGGACAACAGATGG-CATGAAATAATTATA---GTA--GAGTGC-TGTTCTCGAACTTCGAGTTTGTA---GGTCATTACTATTTCTGAAAGTATACGGGGA------ATTT
gi|25744 : TGCTTAAATAT-TATT-AAAGA-AGTA---G---CTTGTCTAGTTTCAAGTGGA-AGATTATTCCATTCCCGGATAACAGACGG-AAGGAACGAATTGGA---GTA--GAGT---TGTTCTTGAAATTGGGAACTGAA---AATCGTTGCTATTTCTGAGAATGTATGTAGA------GTTATCACTTGT
gi|25745 : TTAAA-GG-CATTGATAGA-AACG---G---CTCGTATTGTTTCAATAGGT-AGATTGTTCCAATCACGGACAACAGATGG-CATTAAAGAATTATA---GTA--GAGCGC-TGTTCTCGAACTTGGAATTTGTA---GGTCATAACTATTTCTGAGAGTATACGGGGA------ATTTTCACCTATTTGGGATGGA
gi|25746 : TTTTATTTCATCTGTA-AAAGTGTTCCATTCCCGTATAGAAGAAGG-AAAGAAAGAATCATAATGGTAATTAGAGCGTGTATTTAACG------TTTGGA---TATTATTAGAGTTTCTAAGATTATACCTGGA------
blockSeqs : T T T C G T TCT ATG T G G A C TG ATG ATT A G GAA A TATT T ACTTGC G
blockSeqs : T . . C G . . . T G G A . TG . C A . GAA A T C . G
blockSeqs : G . . C G . . . . G T A . TG . C A . GTA A T T . G
blockSeqs : T . . C G . . . . G G A . TG . C A . GAA A T T . A
blockSeqs : T . . C G . . . . G G T . TG . C G . GAT A T T . A
blockSeqs : T . . C G . . . . G G A . TG . C A . CTT A T G . T
blockSeqs : G . . C G . . . . G T T . TG . C A . CTT T G G . T
blockSeqs : G . . G T . . . . T A T . AT . C C . ATT T G G . T
blockSeqs : G . . G T . . . . T A T . AT . G C . CTT T G G . T
blockSeqs : G . . G T . . . . T A T . AT . G C . CTT T G T . G
blockSeqs : G . . G T . . . . T A T . AT . G C . ATC T G G . T
blockSeqs : T . . C A . . . . T T C . AT . G T . GCA A G T . T
blockSeqs : . . G G . . . . T T T . AG . G T . CTT T A G .
blockSeqs : . . G T . . . . G A T . TG . A G . ATT A G T .
blockSeqs : . . . A . . . . T A C . AT . C T . CTT T T
blockSeqs : . . . T . . . . T T T . GG . G T . GA G .
blockSeqs : . . . . . . . . T A A . AT . G C . G .
blockSeqs : . . . G T . . AT . G A .
blockSeqCons :
originalCons : TCGAGTTNGTGCTTAAA-AG-CATTCAGAGA-AGAG---G---CTTGTCTTGTTTCAAGTGGG-AGAGTGTTCCANTCACGGACAACGGANGG-AATGAAGGAATTNGA---GTA--NAGNGC-TGTTCTCGAAGTNGGAATTTGNA---NGTCATTACTATTTCTGAGGTTGTACGTGGA------ATTTNCATTTGTAAGAGAAGGA
finalCons : TCGAGTTNGTGCTTAAA-AG-CATTCAGAGA-AGAG---G---CTTGTCTTGTTTCAAGTGGG-AGAGTGTTCCANTCACGGACAACGGANGG-AATGAAGGAATTNGA---GTA--NAGNGC-TGTTCTCGAAGTNGGAATTTGNA---NGTCATTACTATTTCTGAGGTTGTACGTGGA------ATTTNCATTTGTAAGAGAAGGA
Alignments
lowQualScore : 1 2 2 6 1 2 0 333 333 4 1 1 1 2 0 11 333 333 1 2 0 666 1 5555 0 1 777777 1
lowQualScore : . . . . . . . ... ... . . . . . . .. ... ... . . . ... . .... . . ...... .
lowQualScore : 0 2 2 7 5 1 7 777 999 2 8 0 7 1 7 55 777 999 0 1 1 777 8 7777 1 6 777777 0
consensus : TCGAGTTNGTGCTTAAA-AG-CATTCAGAGA-AGAG---G---CTTGTCTTGTTTCAAGTGGG-AGAGTGTTCCANTCACGGACAACGGANGG-AATGAAGGAATTNGA---GTA--NAGNGC-TGTTCTCGAAGTNGGAATTTGNA---NGTCATTACTATTTCTGAGGTTGTACGTGGA------ATTTNCATTTGTAAGAGAAGGA
Reference ( family-840 ) : TCGAGTTNGTGCTTAAA-AG-CATTCAGAGA-AGAG---G---CTTGTCTTGTTTCAAGTGGG-AGAGTGTTCCANTCACGGACAACGGANGG-AATGAAGGAATTNGA---GTA--NAGNGC-TGTTCTCGAAGTNGGAATTTGNA---NGTCATTACTATTTCTGAGGTTGTACGTGGA------ATTTNCATTTGTAAGAGAAGGA
gi|25728 : TCGAGTTTATGTTTAAA-AG-CATTCAGAGA-AGAG---G---CTTGTCTTGTTTCAAGTGGG-AGAGTGTTCCAGTCACGGACAACGGAAGG-AATAAAGGAATTTGA---GTA--CAGAGC-TGTTCTTGAAGAAGGAATTTGAA---TATTATTATTATTTCTGAGGTTGTACGTGGA------ACTTGCATTTGTAAGAGAAGGA
gi|25729 : TCGAGTTTATGTTTAAA-AG-CATTCAGAGA-AGAG---G---CTTGTCTTGTTTCAAGTGGG-AGAGTGTTCCAGTCACGGACAACGGAAGG-AATAAAGGAATTTGA---GTA--CAGAGC-TGTTCTTGAAGAAGGAATTTGAA---TATTATTATTATTTCTGAGGTTGTACGTGGA------ACTTGCATTTGTAAGAGAAGGA
gi|25730 : TCGAGTTTATGTTTAAA-AG-CATTCAGAGA-AGAG---G---CTTGTCTTGTTTCAAGTGGG-AGAGTGTTCCAGTCACGGACAACGGAAGG-AATAAAGGAATTTGA---GTA--CAGAAC-TGTTCTTGAAGAAGGAATTTGAA---TATTATTATTATTTCTGAGGTTGTACGCGGAACTTGCATTTGCATTTGTAAGAGAAGGA
gi|25731 : TCAAGTTGGTGTTTGAA-AG-CACTCAGAGA-AGAA---G---CTTGTCTTGTTTCAAGTGGG-AGAGTGTTCCATTCATGGACAATGGAAGG-AATGAAGGAATTTGA---GTA--CAGAGT-TGTTCTTGAAGTAGGGATTTGAA---TATTGTTATTATTTATGAGGTTGTACGTGGA------GTTTGCATTTGTAAGAGAAGGA
gi|25732 : TCGAGTTTATGTTTAAA-AG-CACTCAGAGA-AGAG---
gi|25732 : AGA-ATAG---G---CTTGTCTTGTTTCAAATGGG-AGAGTGTTCCAGTCACGGACAATGGAATG-AATGAAGGAGTTTGA---GTA--CAGAGC-TATTCTTGAAGAAGCAATTTGAA---TATTATTACTATTTCTGAGGTTGTACGTGGA------ACTTACATTTGTTAGAGAAGGAtcactaataaagaattagaattagaacaagaataggcttgtcttgtttcaaatgggagagtgttccagtcacggacaatggaatgaatgaaggagtttgagtacagagctattcttgaagaagcaatttgaatattattactatttctgaggttgtacgtggaacttacatttgttagagaagga
gi|25733 : tcgagtttatgtttaaaagcactcagagaagagtcactaataaagaattagaattagaacaTTGAATTTATGTTTAAA-AA-CATTCAGAGA-AGAG---A---CTTGCCTTGTTTCAAGTGGG-AGAGTGTTCCAGTCACAGACAACGGATGG-AATGAAGGCATTTGG---GTA--CAGGGC-TGTTCTTGAAG-AGGAATTTGAATATTATTATTATTATTTCTGAGGTT
gi|25734 : TCGAGTTTATGTTTAAA-AG-CATTCAGAGA-AGAG---G---CTTGTCTTGTTTCAAGTGGG-AGAGTGTTCGAGTCACGGACAACGGAAGG-AATAAAGGAATTTGA---GTA--CAGAGC-TGTTTTTGAAG
gi|25735 : TCAAGTTGGTGTTTAAA-AT-CATCCAGAGA-AGAA---GATGCTTGTATTTTTTCTAGTGGA-ATAGTGTTCCATTCACGGAC-------GG-AATATAAGCATTTGA---GTA--CAAAGT-TGTACTCAAAGATGGGATTTGAA---TATTGTTATCATTTCTGAGGTTGTACGTGGA------AAATACATTTATAAGAGGAAGAaagtcagtttgga
gi|25736 : AGCTGGTGCTTAAA-GG-CATTGATAGA-AACG---G---CTTGTCTTGTTTCAATAGGT-AGATTGTTCCAATCACGGACAACAGATGG-CATGAAAGAATTATA---GTA--GAGCGC-TGTTCTCGAACTTGGAATTTGTA---GGTCATAACTATTTCTGAGATTATACGGGGA------ATTTTCACCTATTAGGGATGG
gi|25737 : AGCTGGTGCTTAAA-GG-CATTGATAGA-AACG---G---CTTGTCTTGTTTCAATAGGT-AGATTGTTCCAATCACGGACAACAGATGG-CATGAAAGAATTATA---GTA--GAGCGC-TGTTCTCGAACTTGGAATTTGTA---GGTCATAACTATTTCTGAGATTATACGGGGA------ATTTTCA
gi|25738 : AGCTGGTGCTTAAA-GG-CATTGATAGA-AACG---G---CTCGTTTTGTTT-AAATAGGTAGATTGTTCCAATCACGGACAACAGATGG-CATGAAAGAATTATA---GTA--GAGCGC-TGTTCTCGAAATTGGAATTTGTA---GGTCATAACTATTTCTGAGGTTATACGGGGA------ATTTTCA
gi|25739 : AGCTGGTGCTTAAA-GG-CATTGATAGA-AACG---G----TTGTCTTGTTTCAATAGGT-AGATTGTTCCAATCACGGACAACAGATGG-CATGAAAGAATTATA---GTA--GAGCGC-TGTTCTCGAACTTGGAATTTGTA---GGTCATAACTATTTCTGAGATTATACGGGGA------ATTTTCA
gi|25740 : TTATGCTTAAA-GG-GAAT----GATAGAGTCTG---TTTGTTTTGTTTCGATTGGA-TGATTATTCCCTTCGCGAACAACATATGGCAAT-AACGAATTATG---ATA--GAGTGC-TGTTCTTGAACTTGGAAATTGTA---GGTCTTCACTATTTCTGAGATTAT
gi|25741 : TGCTTAAA-TGTCGTT--AAAA-ATGG---G---CGTGTCTAGTTTCTAGTTGT-CGATTGTTCCATTCGCAGACAACAGACAG-AAGGAACGAATAAGA---ATA--AAGTAT-TGTTCTTGAAATCGGGATTTGAA---
gi|25742 : aTGTTTAAA-AG-CATTCAGAGA-AGAG---G---TGAGTCATGTTTCAAGCAGG-AGAGTATCACAATCATGGACAATGGATGG-AATGAAGTCATTTGA---GTA--CAGGGT-TGTTCTTGATGCAGGAATT------------TTA--------G-----GCACGTTGA------ATTTGCATTTGTAAGAGCAGGAta
gi|25743 : TGCTTAAA-AG-CATTGATAGA-AACG---G---CTCGTCTTGTTTC-AGTAGGTAGATTGTCCCAATCACGGACAACAGATGG-CATGAAATAATTATA---GTA--GAGTGC-TGTTCTCGAACTTCGAGTTTGTA---GGTCATTACTATTTCTGAAAGTATACGGGGA------ATTT
gi|25744 : TGCTTAAATAT-TATT-AAAGA-AGTA---G---CTTGTCTAGTTTCAAGTGGA-AGATTATTCCATTCCCGGATAACAGACGG-AAGGAACGAATTGGA---GTA--GAGT---TGTTCTTGAAATTGGGAACTGAA---AATCGTTGCTATTTCTGAGAATGTATGTAGA------GTTATCACTTGT
gi|25745 : TTAAA-GG-CATTGATAGA-AACG---G---CTCGTATTGTTTCAATAGGT-AGATTGTTCCAATCACGGACAACAGATGG-CATTAAAGAATTATA---GTA--GAGCGC-TGTTCTCGAACTTGGAATTTGTA---GGTCATAACTATTTCTGAGAGTATACGGGGA------ATTTTCACCTATTTGGGATGGA
gi|25746 : TTTTATTTCATCTGTA-AAAGTGTTCCATTCCCGTATAGAAGAAGG-AAAGAAAGAATCATAATGGTAATTAGAGCGTGTATTTAACG------TTTGGA---TATTATTAGAGTTTCTAAGATTATACCTGGA------