lowQualScore : 1 1
lowQualScore : 6 66 5 0 1 66 7 4 4
lowQualScore : . .. . . . .. . . .
lowQualScore : 0 44 0 9 6 55 1 8 2
consensus : TTTTTTAAAAACAATTTTGATAATGAAAAA-TCACATATTTCTTACCTTTCACGTGTTGTTTTTAC--GT-CATCTAACTCTGAACCGGAAGTTGCACGTATGGTACAGGCGTCTGTACCAT
Reference ( gi|132775 ) : TTTCTTAAAAACAATTTTGATAATGAAAAA-TCACATATTTCTTACCTTCCACGTGTTGTTTTTAC--GT-CATCTTACTCTGAACCGGAAGTTGCACGTATGGTACAGGCGTGTGTACCAT
gi|132768 : TTTTTTAAAAACAATTTTGATAATGAAAAA-TCACATATATCTTAACTTTCACGTGTTGTTTTTAC--GT-CATCTTACGCTGAACCGGAAGTTGCACGTATGGTACAGGCGTCTGTACC
gi|132770 : aTTTTTTAAATACAATTTTGATGATGAAAAA-TCACATATTTCTTACCTTCCATGTGTTGTTTTTAC--GT-CATCTAACTCTGAACC-GAAGTTGCACGTATGGTACAGGGGTCTGTACCAT
gi|132772 : aTTTTTTAAAAACAATTTTGATAATGAAAAA-TCACATATTTCTTACCTTCCACTTGCTGTTTTTAC--GT-CA----ACTCTGAACCGGAAGTTGCACGTATGATACAGGCGTCTGAACCAT
gi|132771 : aTTTTTTAAAAACAATTTTGATATTGAAAAA-TCACATATTTCTTCCTTTCCACGTGTTGTTTTGAT--GA-CATCTAACGCTGAACCGGAAGTTGCACGTATGGTACAGGCGTCTGTACCAT
gi|132769 : aTTTTTTAAAAACAATTTTGATAATGAAAAG-TCACATATTTCTTATCTTCCACGTGCTGTTTTTAT--GT-TATCTAACTCTGAACCGGATGTTGCACGTATGGTACAGGCATCTACATCAT
gi|132776 : aTTTTTTAAAAAAAAATT-GAAAATGAAAAA-TCACATAATT----------ATGTTTTGTTATTAC--GT-CATCCAATTCTGAACCGGAAGTTGCACGTATGAT-C-------TGTACCAT
gi|132774 : TTTTTTAAAA-CACTTTTGATAATGAAAAAATCCCCT-TTTTTTACCTTTCATTT-TTGTTTTTAG--GT-CATCTAGCTCTGAACCGGAAG-TGCGT-TAAGGT---GGCGT
gi|132773 : aTTTTTTAAAA-CACTTTTGATAATGAAAAAATCCCCT-TTTTTTACCTTTCATTT-TTGTTTTTAG--GT-CATCTAGCTCTGAACCGGAAG-TGCGT-TAAGGT---GGCGT
gi|132777 : aTTTTTAAAAACAATTTTGATGATGAAAAA-TCACATATTTCTTACTTTTCACGTGTTGTTTTCAC--GT-CATCTAACTCTGAACCGGAAGTTGCACATATGGTACAGGCGCCTGTA
gi|132778 : TTAAAAACA--CTTGATACTGATATA-TTACAGATGTCTTATCTTTCTCGTGTTGTTTTAAG--GCACACGATATTTT--ACCAGAAATTACACGTATGATACATGTGT
gi|132780 : tTTAAAAACA--CTTGATAATGATATA-TAACATGTGTCTTATCTTTCCCGTGTTG-TTTTAA--GG-CACACGATTTTTTACCAGGAATAACATGTATGATACATGTGT
gi|132779 : tTTAAAAACA--CTTGATAATGATATA-TAACATGTGTCTTATCTTTCCCGTGTTG-TTTTAA--GG-CACACGATTTTTTACCAGGAATAACATGTATGATACATGTGT
gi|132781 : tAAAAACAA-----ATAA--ACAAA-TCACATATTTCTTGCCTTTCATGTGTTGTTTTCAC--TT-CATCTAACTCTGAACCGAAAGTTACACATATGGTACA
gi|132782 : AATTTTGATAATAAAAAA-TCACATATAATTTACCTTCCACGTGCTGTTTTTAC--GT-CATCTTACCCTGAACGGGAAGTTGCACGTATGGTACAGGCGTCTGTACCATatgttactggcgaccataccat
gi|132784 : TAATGAAAAG-TAACATGTTTCTTACCTTTCACGTGTTATTT--ACCAGTTCACCC-ATTCTGAACCGGAAGTTGCATATATGGCACAGGAGTCAGTATCAT
gi|132783 : TAATGAAAAG-TAACATGTTTCTTACCTTTCACGTGTTATTT--ACCAGTTCACCC-ATTCTGAACCGGAAGTTGCATATATGGCACAGGAGTCAGTATCAT
gi|132785 : CATGTGTTGTTTTTAC--AT-CATCTATCTCTTAACCGTAAGATGCATGTATGGTACAGGCGCATGTACCAT
gi|132786 : tACTCTGAACCGGAAGTTGCACATATGGTACATGTGTCTCTACCAT
Alignments
lowQualScore : 44 4 0 1 66 4 2 33 77777777
lowQualScore : .. . . . .. . . .. ........
lowQualScore : 88 7 3 9 11 4 1 99 66666666
consensus : TTTTTTAAAAACAATTTTGATAATGAAAAA-TCACATATTTCTTACCTTTCACGTGTTGTTTTTAC--G-TCAT-CTA-ACTCTGAACCGGAAGTTGCACGTATGGTACA--------GGCGTCTGTACCAT
Reference ( family-834 ) : TTTTTTAAAAACAATTTTGATAATGAAAAA-TCACATATTTCTTACCTTTCACGTGTTGTTTTTAC--G-TCAT-CTA-ACTCTGAACCGGAAGTTGCACGTATGGTACA--------GGCGTCTGTACCAT
gi|132768 : TTTTTTAAAAACAATTTTGATAATGAAAAA-TCACATATATCTTAACTTTCACGTGTTGTTTTTAC--G-TCAT-CTT-ACGCTGAACCGGAAGTTGCACGTATGGTACA--------GGCGTCTGTACC
gi|132769 : aTTTTTTAAAAACAATTTTGATAATGAAAAG-TCACATATTTCTTATCTTCCACGTGCTGTTTTTAT--G-TTAT-CTA-ACTCTGAACCGGATGTTGCACGTATGGTACA--------GGCATCTACATCAT
gi|132770 : aTTTTTTAAATACAATTTTGATGATGAAAAA-TCACATATTTCTTACCTTCCATGTGTTGTTTTTAC--G-TCAT-CTA-ACTCTGAACC-GAAGTTGCACGTATGGTACA--------GGGGTCTGTACCAT
gi|132771 : aTTTTTTAAAAACAATTTTGATATTGAAAAA-TCACATATTTCTTCCTTTCCACGTGTTGTTTTGAT--G-ACAT-CTA-ACGCTGAACCGGAAGTTGCACGTATGGTACA--------GGCGTCTGTACCAT
gi|132772 : aTTTTTTAAAAACAATTTTGATAATGAAAAA-TCACATATTTCTTACCTTCCACTTGCTGTTTTTAC--G-TC-----A-ACTCTGAACCGGAAGTTGCACGTATGATACA--------GGCGTCTGAACCAT
gi|132773 : aTTTTTTAAAA-CACTTTTGATAATGAAAAAATCCCCT-TTTTTTACCTTTCATTT-TTGTTTTTAG--G-TCAT-CTA-GCTCTGAACCGGAAG-TGCGT-TAAGGT-----------GGCGT
gi|132774 : aTTTTTTAAAA-CACTTTTGATAATGAAAAAATCCCCT-TTTTTTACCTTTCATTT-TTGTTTTTAG--G-TCAT-CTA-GCTCTGAACCGGAAG-TGCGT-TAAGGT-----------GGCGT
gi|132775 : aTTTCTTAAAAACAATTTTGATAATGAAAAA-TCACATATTTCTTACCTTCCACGTGTTGTTTTTAC--G-TCAT-CTT-ACTCTGAACCGGAAGTTGCACGTATGGTACA--------GGCGTGTGTACCAT
gi|132776 : TTTTTTAAAAAAAAATT-GAAAATGAAAAA-TCACATAATT----------ATGTTTTGTTATTAC--G-TCAT-CCA-ATTCTGAACCGGAAGTTGCACGTATG----------------ATCTGTACCAT
gi|132777 : TTTTTAAAAACAATTTTGATGATGAAAAA-TCACATATTTCTTACTTTTCACGTGTTGTTTTCAC--G-TCAT-CTA-ACTCTGAACCGGAAGTTGCACATATGGTACA--------GGCGCCTGTA
gi|132778 : TTTAAAAACA--CTTGATACTGATATA-TTACAGATGTCTTATCTTTCTCGTGTTGTTTT-AA--G-GCACACGATATTTT--ACCAGAAATTACACGTATGATACA--------TGTGT
gi|132779 : TTTAAAAACA--CTTGATAATGATATA-TAACATGTGTCTTATCTTTCCCGTGTTG-TTTTAA--G-GCAC-ACG-ATTTTTTACCAGGAATAACATGTATGATACA--------TGTGT
gi|132780 : TTTAAAAACA--CTTGATAATGATATA-TAACATGTGTCTTATCTTTCCCGTGTTG-TTTTAA--G-GCAC-ACG-ATTTTTTACCAGGAATAACATGTATGATACA--------TGTGT
gi|132781 : AAAAACAA-----ATAA--ACAAA-TCACATATTTCTTGCCTTTCATGTGTTGTTTTCAC--T-TCAT-CTA-ACTCTGAACCGAAAGTTACACATATGGTACAATGTTACTGGCGACCATACCAT
gi|132782 : AATTTTGATAATAAAAAA-TCACATATAATTTACCTTCCACGTGCTGTTTTTAC--G-TCAT-CTT-ACCCTGAACGGGAAGTTGCACGTATGGTACA--------GGCGTCTGTACCAT
gi|132783 : TAATGAAAAG-TAACATGTTTCTTACCTTTCACGTGTTA--TTTACCAGTTCAC-CC--ATTCTGAACCGGAAGTTGCATATATGGCACA--------GGAGTCAGTATCAT
gi|132784 : TAATGAAAAG-TAACATGTTTCTTACCTTTCACGTGTTA--TTTACCAGTTCAC-CC--ATTCTGAACCGGAAGTTGCATATATGGCACA--------GGAGTCAGTATCAT
gi|132785 : TCATGTGTTGTTTTTAC--A-TCAT-CTA-TCTCTTAACCGTAAGATGCATGTATGGTACA--------GGCGCATGTACCAT
gi|132786 : T-TTA-ACTCTGAACCGGAAGTTGCACATATGGTACA--------TGTGTCTCTACCAT
Alignments
lowQualScore : 44 4 0 1 66 4 2 33 77777777
lowQualScore : .. . . . .. . . .. ........
lowQualScore : 88 7 3 9 11 4 1 99 66666666
consensus : TTTTTTAAAAACAATTTTGATAATGAAAAA-TCACATATTTCTTACCTTTCACGTGTTGTTTTTAC--G-TCAT-CTA-ACTCTGAACCGGAAGTTGCACGTATGGTACA--------GGCGTCTGTACCAT
Reference ( family-834 ) : TTTTTTAAAAACAATTTTGATAATGAAAAA-TCACATATTTCTTACCTTTCACGTGTTGTTTTTAC--G-TCAT-CTA-ACTCTGAACCGGAAGTTGCACGTATGGTACA--------GGCGTCTGTACCAT
gi|132768 : TTTTTTAAAAACAATTTTGATAATGAAAAA-TCACATATATCTTAACTTTCACGTGTTGTTTTTAC--G-TCAT-CTT-ACGCTGAACCGGAAGTTGCACGTATGGTACA--------GGCGTCTGTACC
gi|132769 : aTTTTTTAAAAACAATTTTGATAATGAAAAG-TCACATATTTCTTATCTTCCACGTGCTGTTTTTAT--G-TTAT-CTA-ACTCTGAACCGGATGTTGCACGTATGGTACA--------GGCATCTACATCAT
gi|132770 : aTTTTTTAAATACAATTTTGATGATGAAAAA-TCACATATTTCTTACCTTCCATGTGTTGTTTTTAC--G-TCAT-CTA-ACTCTGAACC-GAAGTTGCACGTATGGTACA--------GGGGTCTGTACCAT
gi|132771 : aTTTTTTAAAAACAATTTTGATATTGAAAAA-TCACATATTTCTTCCTTTCCACGTGTTGTTTTGAT--G-ACAT-CTA-ACGCTGAACCGGAAGTTGCACGTATGGTACA--------GGCGTCTGTACCAT
gi|132772 : aTTTTTTAAAAACAATTTTGATAATGAAAAA-TCACATATTTCTTACCTTCCACTTGCTGTTTTTAC--G-TC-----A-ACTCTGAACCGGAAGTTGCACGTATGATACA--------GGCGTCTGAACCAT
gi|132773 : aTTTTTTAAAA-CACTTTTGATAATGAAAAAATCCCCT-TTTTTTACCTTTCATTT-TTGTTTTTAG--G-TCAT-CTA-GCTCTGAACCGGAAG-TGCGT-TAAGGT-----------GGCGT
gi|132774 : aTTTTTTAAAA-CACTTTTGATAATGAAAAAATCCCCT-TTTTTTACCTTTCATTT-TTGTTTTTAG--G-TCAT-CTA-GCTCTGAACCGGAAG-TGCGT-TAAGGT-----------GGCGT
gi|132775 : aTTTCTTAAAAACAATTTTGATAATGAAAAA-TCACATATTTCTTACCTTCCACGTGTTGTTTTTAC--G-TCAT-CTT-ACTCTGAACCGGAAGTTGCACGTATGGTACA--------GGCGTGTGTACCAT
gi|132776 : TTTTTTAAAAAAAAATT-GAAAATGAAAAA-TCACATAATT----------ATGTTTTGTTATTAC--G-TCAT-CCA-ATTCTGAACCGGAAGTTGCACGTATG----------------ATCTGTACCAT
gi|132777 : TTTTTAAAAACAATTTTGATGATGAAAAA-TCACATATTTCTTACTTTTCACGTGTTGTTTTCAC--G-TCAT-CTA-ACTCTGAACCGGAAGTTGCACATATGGTACA--------GGCGCCTGTA
gi|132778 : TTTAAAAACA--CTTGATACTGATATA-TTACAGATGTCTTATCTTTCTCGTGTTGTTTT-AA--G-GCACACGATATTTT--ACCAGAAATTACACGTATGATACA--------TGTGT
gi|132779 : TTTAAAAACA--CTTGATAATGATATA-TAACATGTGTCTTATCTTTCCCGTGTTG-TTTTAA--G-GCAC-ACG-ATTTTTTACCAGGAATAACATGTATGATACA--------TGTGT
gi|132780 : TTTAAAAACA--CTTGATAATGATATA-TAACATGTGTCTTATCTTTCCCGTGTTG-TTTTAA--G-GCAC-ACG-ATTTTTTACCAGGAATAACATGTATGATACA--------TGTGT
gi|132781 : AAAAACAA-----ATAA--ACAAA-TCACATATTTCTTGCCTTTCATGTGTTGTTTTCAC--T-TCAT-CTA-ACTCTGAACCGAAAGTTACACATATGGTACAATGTTACTGGCGACCATACCAT
gi|132782 : AATTTTGATAATAAAAAA-TCACATATAATTTACCTTCCACGTGCTGTTTTTAC--G-TCAT-CTT-ACCCTGAACGGGAAGTTGCACGTATGGTACA--------GGCGTCTGTACCAT
gi|132783 : TAATGAAAAG-TAACATGTTTCTTACCTTTCACGTGTTA--TTTACCAGTTCAC-CC--ATTCTGAACCGGAAGTTGCATATATGGCACA--------GGAGTCAGTATCAT
gi|132784 : TAATGAAAAG-TAACATGTTTCTTACCTTTCACGTGTTA--TTTACCAGTTCAC-CC--ATTCTGAACCGGAAGTTGCATATATGGCACA--------GGAGTCAGTATCAT
gi|132785 : TCATGTGTTGTTTTTAC--A-TCAT-CTA-TCTCTTAACCGTAAGATGCATGTATGGTACA--------GGCGCATGTACCAT
gi|132786 : T-TTA-ACTCTGAACCGGAAGTTGCACATATGGTACA--------TGTGTCTCTACCAT
blockSeqs : AT A T CA T A AT ATGTTACT
blockSeqs : AT A T CA T . A .
blockSeqs : AT . T . . . A .
blockSeqs : AT . T . . . A .
blockSeqs : CT . T . . . A .
blockSeqs : CT . T . . . A .
blockSeqs : AT . T . . . A .
blockSeqs : AA . T . . . T .
blockSeqs : AT . T . . . A .
blockSeqs : AT . T . . . A .
blockSeqs : A . T . . . G .
blockSeqs : . . T . . . G .
blockSeqs : . . T . . . A .
blockSeqs : . . . . . . T .
blockSeqs : . . . . . A .
blockSeqs : . . . . . A .
blockSeqs : . . . . . .
blockSeqs : . . .
blockSeqCons :
originalCons : TTTTTTAAAAACAATTTTGATAATGAAAAA-TCACATATTTCTTACCTTTCACGTGTTGTTTTTAC--G-TCAT-CTA-ACTCTGAACCGGAAGTTGCACGTATGGTACA--------GGCGTCTGTACCAT
finalCons : TTTTTTAAAAACAATTTTGATAATGAAAAA-TCACATATTTCTTACCTTTCACGTGTTGTTTTTAC--G-TCAT-CTA-ACTCTGAACCGGAAGTTGCACGTATGGTACA--------GGCGTCTGTACCAT
Alignments
lowQualScore : 44 4 0 1 66 4 2 33 77777777
lowQualScore : .. . . . .. . . .. ........
lowQualScore : 88 7 3 9 11 4 1 99 66666666
consensus : TTTTTTAAAAACAATTTTGATAATGAAAAA-TCACATATTTCTTACCTTTCACGTGTTGTTTTTAC--G-TCAT-CTA-ACTCTGAACCGGAAGTTGCACGTATGGTACA--------GGCGTCTGTACCAT
Reference ( family-834 ) : TTTTTTAAAAACAATTTTGATAATGAAAAA-TCACATATTTCTTACCTTTCACGTGTTGTTTTTAC--G-TCAT-CTA-ACTCTGAACCGGAAGTTGCACGTATGGTACA--------GGCGTCTGTACCAT
gi|132768 : TTTTTTAAAAACAATTTTGATAATGAAAAA-TCACATATATCTTAACTTTCACGTGTTGTTTTTAC--G-TCAT-CTT-ACGCTGAACCGGAAGTTGCACGTATGGTACA--------GGCGTCTGTACC
gi|132769 : aTTTTTTAAAAACAATTTTGATAATGAAAAG-TCACATATTTCTTATCTTCCACGTGCTGTTTTTAT--G-TTAT-CTA-ACTCTGAACCGGATGTTGCACGTATGGTACA--------GGCATCTACATCAT
gi|132770 : aTTTTTTAAATACAATTTTGATGATGAAAAA-TCACATATTTCTTACCTTCCATGTGTTGTTTTTAC--G-TCAT-CTA-ACTCTGAACC-GAAGTTGCACGTATGGTACA--------GGGGTCTGTACCAT
gi|132771 : aTTTTTTAAAAACAATTTTGATATTGAAAAA-TCACATATTTCTTCCTTTCCACGTGTTGTTTTGAT--G-ACAT-CTA-ACGCTGAACCGGAAGTTGCACGTATGGTACA--------GGCGTCTGTACCAT
gi|132772 : aTTTTTTAAAAACAATTTTGATAATGAAAAA-TCACATATTTCTTACCTTCCACTTGCTGTTTTTAC--G-TC-----A-ACTCTGAACCGGAAGTTGCACGTATGATACA--------GGCGTCTGAACCAT
gi|132773 : aTTTTTTAAAA-CACTTTTGATAATGAAAAAATCCCCT-TTTTTTACCTTTCATTT-TTGTTTTTAG--G-TCAT-CTA-GCTCTGAACCGGAAG-TGCGT-TAAGGT-----------GGCGT
gi|132774 : aTTTTTTAAAA-CACTTTTGATAATGAAAAAATCCCCT-TTTTTTACCTTTCATTT-TTGTTTTTAG--G-TCAT-CTA-GCTCTGAACCGGAAG-TGCGT-TAAGGT-----------GGCGT
gi|132775 : aTTTCTTAAAAACAATTTTGATAATGAAAAA-TCACATATTTCTTACCTTCCACGTGTTGTTTTTAC--G-TCAT-CTT-ACTCTGAACCGGAAGTTGCACGTATGGTACA--------GGCGTGTGTACCAT
gi|132776 : TTTTTTAAAAAAAAATT-GAAAATGAAAAA-TCACATAATT----------ATGTTTTGTTATTAC--G-TCAT-CCA-ATTCTGAACCGGAAGTTGCACGTATG----------------ATCTGTACCAT
gi|132777 : TTTTTAAAAACAATTTTGATGATGAAAAA-TCACATATTTCTTACTTTTCACGTGTTGTTTTCAC--G-TCAT-CTA-ACTCTGAACCGGAAGTTGCACATATGGTACA--------GGCGCCTGTA
gi|132778 : TTTAAAAACA--CTTGATACTGATATA-TTACAGATGTCTTATCTTTCTCGTGTTGTTTT-AA--G-GCACACGATATTTT--ACCAGAAATTACACGTATGATACA--------TGTGT
gi|132779 : TTTAAAAACA--CTTGATAATGATATA-TAACATGTGTCTTATCTTTCCCGTGTTG-TTTTAA--G-GCAC-ACG-ATTTTTTACCAGGAATAACATGTATGATACA--------TGTGT
gi|132780 : TTTAAAAACA--CTTGATAATGATATA-TAACATGTGTCTTATCTTTCCCGTGTTG-TTTTAA--G-GCAC-ACG-ATTTTTTACCAGGAATAACATGTATGATACA--------TGTGT
gi|132781 : AAAAACAA-----ATAA--ACAAA-TCACATATTTCTTGCCTTTCATGTGTTGTTTTCAC--T-TCAT-CTA-ACTCTGAACCGAAAGTTACACATATGGTACAATGTTACTGGCGACCATACCAT
gi|132782 : AATTTTGATAATAAAAAA-TCACATATAATTTACCTTCCACGTGCTGTTTTTAC--G-TCAT-CTT-ACCCTGAACGGGAAGTTGCACGTATGGTACA--------GGCGTCTGTACCAT
gi|132783 : TAATGAAAAG-TAACATGTTTCTTACCTTTCACGTGTTA--TTTACCAGTTCAC-CC--ATTCTGAACCGGAAGTTGCATATATGGCACA--------GGAGTCAGTATCAT
gi|132784 : TAATGAAAAG-TAACATGTTTCTTACCTTTCACGTGTTA--TTTACCAGTTCAC-CC--ATTCTGAACCGGAAGTTGCATATATGGCACA--------GGAGTCAGTATCAT
gi|132785 : TCATGTGTTGTTTTTAC--A-TCAT-CTA-TCTCTTAACCGTAAGATGCATGTATGGTACA--------GGCGCATGTACCAT
gi|132786 : T-TTA-ACTCTGAACCGGAAGTTGCACATATGGTACA--------TGTGTCTCTACCAT