lowQualScore : 1111 2 1 222222222222222 1 1
lowQualScore : 0 5 2 33 6666 66666 0 3 33 6 3 444 888 6 5 222222222222222 2 888888 5
lowQualScore : . . . .. .... ..... . . .. . . ... ... . . ............... . ...... .
lowQualScore : 6 0 5 44 2222 11111 0 3 77 6 7 444 000 0 3 555555555555555 6 222222 0
consensus : TACGAGGGGCATTCAATAAATTCTGTCACTAATGGCCTTCCGTAGAAACAATGTTGCGTA-AGAACAT--GAAA---AA---C-TCGTGCAATTGTTTGGGGATGTTTATTCAATAC--ACCTGCGAATTCTCAATTTAATCCGATTATAATTGACCA---AGATATT--CATTGTTGAATTATACACACTCGT--------------GTACAGT------GGCTATATTTCAATGTCATAATGAAACCTGAAGAAAAA
Reference ( gi|97524 ) : TACGAGGGGCATTCAATAAATTCTGTCACTAATGGCCTTCCATAGAAACAATGTTGCGTA-AGAACAT--GAAC---AA---C-TCGTGCACTTGTTTGGGGATGTTTATTCACTAC--ACCTGCGAGTTCTCAATTTAATCCGATTATAATTGACCA---AGATATC--CATCGTTGAATTATACATACTCAT--------------ATAGAGT------GGCTATATTTAAATGTCATAATGAAACCTGAAGAAAAA
gi|97516 : TACGACGGGCATTCAATCAATTCTGTCACTAATGGCCTTCCGTAGAAACAATGTTGTGTA-AGAACAT--AAAC---AA---C-TTGTGCAATTGTTTTGGGAGGTTTATTCAATAC--ACCTGCAAATTCTCAATTTAATCCGATTACAATTGACCA---AGATATT--CATTGTTGAATTATACACACTCGT--------------GTACAGT------GGCTATATTTCAATGTCATAATGAAACCGGAAGAAAAA
gi|97525 : aTACGACGGGCATTCAATAATTTCTGTCACTAATGGCCTTCCGTAGAAACATTGCTGCGTA-AGAACAT--AAAA---AAAAAC-TCGTGCAATTGTTTTGGAATGTCTATTCAATAC--ACCTGCGAATTCTCAATTTAATCCGATTATAATTGACCA---AGATATT--CATTGTTGAATTATAC--ACTCGA--------------GTACAGT------GGCTATATTTCAATGTCATAATGAAACCTGAAGAAAAA
gi|97527 : TACGAGGGGCATTCAATAAATTTTGTCACTAATGGTCTTCCGTAGAAACAATGATGCGTA-AGAACAT--CAAA---AG---C-TCGTGCAGTTGTTTGGGGACGATTATTCAATAC--ACCTTCGAATTCTCAATTTAATCCGAGTATACTTGACCA---AGATATT--CATTGTTGAATTATACATACTCGT--------------TTACAGT------GACTATGTTTCAATGTCATAAAGAAA
gi|97517 : TATGAGGGGTATTCAATATATTCTGTCACTAATGGCCTTCCGTAGAAACAATGTTGCGTA-AGAACAT--AAAA---AA---AATTGGGGGATTGTTTGGGGATGTGTATTCAATAC--ACCTGCGAATAATCAATTTAATCTGATTATAACTGATTG---AGATATT--CATTGTTGAATTATACACACTCGT--------------GTATAGT------GGCTATATTTCAGTGTCATAATAAAACCTGAAGAAAAA
gi|97519 : aTACGAGGGGCATTCAATAAATTCTGTCACTAATGGCCTTCCGTTGAAACAATGTTGT-TA-AGAACAT--GAAC--------C-TCGTGCAATTGATTGGGGATGTTTATGCAATAC--AGCTATGAATTCTCAATATATTCTGATTATTATTGACCA---AAATATT--CATTGTTGAATTATACCCACTCAT--------------GTACAGT------GGCTATATATCAATGTCATATTGAAACCTGAATAAAA
gi|97526 : aTACGAGGGTCATTCAGTAAATGCTGTCGTTAAATGCGTTCCGTAGAAACAATGTTGCATA-AGAACAT--AAAA---AA---C-TCGTGCAATTGTTTGGGGATGTTTATTCAACAC--ACCTGCGAATTTTCAAATTAATCAGACTATAATTGACCA---AAATATT--CATTGTTAAATTATACATACTAAT--------------GTACAGT------GGCTAGGTTTCAATGTCATAATAACACCTGAAGAAAA
gi|97528 : TACGAGGGGCATTCAATAAATTCTGTCACAAATGGCCTTCCGTTGAAACAATGTTGCGTA-AGAACAT--GAAA---AA---------GCAATTGTTTGGAGATGTTTATTCAATAC--ACCTCCAAATTCTCAATTTAATCCGATTGTGATTGACCA---AGATACT--CATTG-TGAATTGTGCACACTCATGTACACTGGTTATAACAGAATAGAACAGGTTATATTTCAATGTCATAATGAAACCTGAAGAAAAA
gi|97529 : TACGAGTGGCATATAATATATTATGTCACTTATGGCCTTCCGTAGAAACAATGTTGCGTA-CGAACAT--GAAA---AA---T-TCATGCAATTGTTTGGGGATGTTTATTCAATAC--ACCTGCGAATTCTCAATTTAA----A-------TGACCG---AGATATG--TGTTGTTGAATTATACACACTCAT--------------GTACAGT------GACTGTATTTCAATGTCATAATGAAACCTGAAGAAAAA
gi|97531 : TAC-AGGTGCATTCAATAAAATTTGTCACTAATGGACTTCCGTAAAAATAATGTTGCGTA-TGAACAT--GAAA---AT---C-TCGTGCAATTGTTTGGGGATGTTTATTCAATAA--ACCTGCGAATTCTCAATTCAATCCGATTATAAATGACAA---AGATAAT--CATTGT
gi|97532 : TAC-AGGTGCATTCGATAAAATTTGTCAATAATGGCCTACCGTAGAAATAATGTTGCATA-TGAACAT--GAAA---AT---A-TCGTGCAATTGTTTGGGGATGTTTATTCAATAC--ACCTGCGAATTCTCAATTTAATCCGAATATAAATGACCA---AGATAAT--CATTGT
gi|97530 : TACGAGGGGCATTCAATAAATTCTGTCACTAATGGCCTTCCGTAGAAACAATGTTACGTA-AG-ACAT--GAAA---AA---C-TCGTGCAATTGTTTGGGGATGTATATTCAATAC--ATCTACG
gi|97533 : TACGAGGGGGTTTCAATACATTCTGTCACTAATGCGTTTCTGTAGAA--AACGT--CGTACACAACA---GCACACAAA---T-TTGTGCA---------------------ACTACAAACATGCAACTATGTGTTTTAATC-------AAATAACCATGGAGATATC--ACTTGTTGAGTTTCAGGCACACAT--------------GTAAAAT------GGCTATATTTCAATGCTATGAAAAAAC---AAGAAAttgttgaattatacacactcgtgtacagtggatatttgttataatgaaacctgaagaaa
gi|97521 : TACGAGGGGCATTCAGTATATTCTGTCAC---TGGTCTTC
gi|97523 : aTACGAGGGACATTCAATAAATTATGTCAT---TGGTCTTC
gi|97518 : aATGAGGGGCATTGAATATATTCTGTCACTAATGGCCTTCCATAGAAACAATGCTGTGTA-AGAATATTAGAA----AA---T-TGGGGGA-TTGTTTGGGGATGTGTAATCAATAC--ACCTGCAAATAATCAATTTAATCCGAATATAACTGACCG---AGATATT--CATTGTTGAATTATACACACTCAT--------------GTACAGT------GGCTATATTTCAATGTCATATTGAAACCTGAAGAAAAA
gi|97520 : acACGAGAGGCATTCAATAAATTCTGCCACTAATGGCCATCCGTAGAAACAATGTTGCGTA-AGAACAT--GAAA---AC---C-TCATGCAATTGTTTGAGGATGTTTATGCAAT-------TTCAAATTTTCAATTTAATCCGATTATAATTGACCA---AGATATT--CATTGTTGAAGTTTACACACTCAT--------------GTACAGT------GGTTATATTTCAATGTCATATTAAAACATGACCAAAA
gi|97522 : acCGAGGGGCATTCAATAAATTCTGTCACTTATGGCCTTCCGTAAAAACAAAGTTGCGTA-AGAACAT--AAAA---AA---C-GCG
gi|97534 : attCGAGGGGCATTCAATATATTCTGTCAC---TGGTCTTCaattctcagtgtaatccgaatataattgaagaagatattcattgttgaattataaacactcatgtacagcggctatatttcaatgtcgtaattaaacctgaaaacaaa
gi|97535 : TA-AGAACAT--GAAA---CA---C-TCGTGCA-------------ACTTATTCAATAC--ACCTGCGAATTCTCAATTCAACCTGATTATAATTGACCA---ATATATT--CATTGTTGAATTATGCAAA--CAT--------------GTTCAGT------GGCTATGCTTCAATGTCATAATGAAATCTGAAGAAAAA
gi|97522 : GCGAATTCTCAGTGTAATCCGAATATAATTGAAGA---AGATATT--CATTGTTGAATTATAAACACTCAT--------------GTACAGC------GGCTATATTTCAATGTCGTAATTAAACCTGAAAACAAA
gi|97530 : attcgaggggcattcaataaattctgtcacttatggccttccgtaaaaacaaagttgcgtaagaacataaaaaacCA---ATACATCTACGTTGTTGAATTATACACACTCGT--------------GTACAGT------GG--ATATT----TGTTATAATGAAACCTGAAGAAA
Alignments
lowQualScore : 22222222222222222222
lowQualScore : 0 33 1 444444 1 2 2 444 2 0 11111111111111111111
lowQualScore : . .. . ...... . . . ... . . ....................
lowQualScore : 1 44 1 999999 9 5 9 444 4 7 77777777777777777777
consensus : TACGAGGGGCATTCAATAAATTCTGTCACTAATGGCCTTCCGTAGAAACAATGTTG--CGTAAGAACATGAAAA---AC-TCGTGCAATTGTTTGGGGATGTTTATTCAATACACCTGCGAATTCT-CAATTTAATCCGATTATAATTGACCA---AGATATTCA-TTGTTGAATTATACACACTCGTGTACAGTGGCT--------------------ATATTTCAATGTCATAATGAAACCTGAAGAAAAA
Reference ( family-824 ) : TACGAGGGGCATTCAATAAATTCTGTCACTAATGGCCTTCCGTAGAAACAATGTTG--CGTAAGAACATGAAAA---AC-TCGTGCAATTGTTTGGGGATGTTTATTCAATACACCTGCGAATTCT-CAATTTAATCCGATTATAATTGACCA---AGATATTCA-TTGTTGAATTATACACACTCGTGTACAGTGGCT--------------------ATATTTCAATGTCATAATGAAACCTGAAGAAAAA
gi|97516 : TACGACGGGCATTCAATCAATTCTGTCACTAATGGCCTTCCGTAGAAACAATGTTG--TGTAAGAACATAAACA---AC-TTGTGCAATTGTTTTGGGAGGTTTATTCAATACACCTGCAAATTCT-CAATTTAATCCGATTACAATTGACCA---AGATATTCA-TTGTTGAATTATACACACTCGTGTACAGTGGCT--------------------ATATTTCAATGTCATAATGAAACCGGAAGAAAAA
gi|97517 : aTATGAGGGGTATTCAATATATTCTGTCACTAATGGCCTTCCGTAGAAACAATGTTG--CGTAAGAACATAAAAA---AAATTGGGGGATTGTTTGGGGATGTGTATTCAATACACCTGCGAATAAT-CAATTTAATCTGATTATAACTGATTG---AGATATTCA-TTGTTGAATTATACACACTCGTGTATAGTGGCT--------------------ATATTTCAGTGTCATAATAAAACCTGAAGAAAAA
gi|97518 : aATGAGGGGCATTGAATATATTCTGTCACTAATGGCCTTCCATAGAAACAATGCTG--TGTAAGAATATTAGAA---AA-TTGGGGGATTGTTTGGGGATGTGTAATCAATACACCTGCAAATAAT-CAATTTAATCCGAATATAACTGACCG---AGATATTCA-TTGTTGAATTATACACACTCATGTACAGTGGCT--------------------ATATTTCAATGTCATATTGAAACCTGAAGAAAAA
gi|97519 : acTACGAGGGGCATTCAATAAATTCTGTCACTAATGGCCTTCCGTTGAAACAATGTTG--T-TAAGAACATGAAC-----C-TCGTGCAATTGATTGGGGATGTTTATGCAATACAGCTATGAATTCT-CAATATATTCTGATTATTATTGACCA---AAATATTCA-TTGTTGAATTATACCCACTCATGTACAGTGGCT--------------------ATATATCAATGTCATATTGAAACCTGAATAAAA
gi|97520 : aACGAGAGGCATTCAATAAATTCTGCCACTAATGGCCATCCGTAGAAACAATGTTG--CGTAAGAACATGAAAA---CC-TCATGCAATTGTTTGAGGATGTTTATGCAAT-----TTCAAATTTT-CAATTTAATCCGATTATAATTGACCA---AGATATTCA-TTGTTGAAGTTTACACACTCATGTACAGTGGTT--------------------ATATTTCAATGTCATATTAAAACATGACCAAAA
gi|97521 : acTACGAGGGGCATTCAGTATATTCTGTCAC---TGGTCTTC
gi|97522 : aCGAGGGGCATTCAATAAATTCTGTCACTTATGGCC----------------TTC--CGTAAAAACA-----A---AG-TTGCGTAA--------GAACAT------AAAAAAC--GCGAATTCT-CAGTGTAATCCGAATATAATTGAAGA---AGATATTCA-TTGTTGAATTATAAACACTCATGTACAGCGGCT--------------------ATATTTCAATGTCGTAATTAAACCTGAAAACAAA
gi|97523 : attTACGAGGGACATTCAATAAATTATGTCAT---TGGTCTTC
gi|97524 : aTACGAGGGGCATTCAATAAATTCTGTCACTAATGGCCTTCCATAGAAACAATGTTG--CGTAAGAACATGAACA---AC-TCGTGCACTTGTTTGGGGATGTTTATTCACTACACCTGCGAGTTCT-CAATTTAATCCGATTATAATTGACCA---AGATATCCA-TCGTTGAATTATACATACTCATATAGAGTGGCT--------------------ATATTTAAATGTCATAATGAAACCTGAAGAAAAA
gi|97525 : TACGACGGGCATTCAATAATTTCTGTCACTAATGGCCTTCCGTAGAAACATTGCTG--CGTAAGAACATAAAAAAAAAC-TCGTGCAATTGTTTTGGAATGTCTATTCAATACACCTGCGAATTCT-CAATTTAATCCGATTATAATTGACCA---AGATATTCA-TTGTTGAATTAT--ACACTCGAGTACAGTGGCT--------------------ATATTTCAATGTCATAATGAAACCTGAAGAAAAA
gi|97526 : TACGAGGGTCATTCAGTAAATGCTGTCGTTAAATGCGTTCCGTAGAAACAATGTTG--CATAAGAACATAAAAA---AC-TCGTGCAATTGTTTGGGGATGTTTATTCAACACACCTGCGAATTTT-CAAATTAATCAGACTATAATTGACCA---AAATATTCA-TTGTTAAATTATACATACTAATGTACAGTGGCT--------------------AGGTTTCAATGTCATAATAACACCTGAAGAAAA
gi|97527 : TACGAGGGGCATTCAATAAATTTTGTCACTAATGGTCTTCCGTAGAAACAATGATG--CGTAAGAACATCAAAA---GC-TCGTGCAGTTGTTTGGGGACGATTATTCAATACACCTTCGAATTCT-CAATTTAATCCGAGTATACTTGACCA---AGATATTCA-TTGTTGAATTATACATACTCGTTTACAGTGACT--------------------ATGTTTCAATGTCATAAAGAAA
gi|97528 : TACGAGGGGCATTCAATAAATTCTGTCACAAATGGCCTTCCGTTGAAACAATGTTG--CGTAAGAACATGAAAA---A------GCAATTGTTTGGAGATGTTTATTCAATACACCTCCAAATTCT-CAATTTAATCCGATTGTGATTGACCA---AGATACTCA-TTG-TGAATTGTGCACACTCATGTACACTGGTTATAACAGAATAGAACAGGTTATATTTCAATGTCATAATGAAACCTGAAGAAAAA
gi|97529 : TACGAGTGGCATATAATATATTATGTCACTTATGGCCTTCCGTAGAAACAATGTTG--CGTACGAACATGAAAA---AT-TCATGCAATTGTTTGGGGATGTTTATTCAATACACCTGCGAATTCT-CAATTTAA----A-------TGACCG---AGATATGTG-TTGTTGAATTATACACACTCATGTACAGTGACT--------------------GTATTTCAATGTCATAATGAAACCTGAAGAAAAA
gi|97530 : TACGAGGGGCATTCAATAAATTCTGTCACTAATGGCCTTCCGTAGAAACAATGTTA--CGTAAG-ACATGAAAA---AC-TCGTGCAATTGTTTGGGGATGTATATTCAATACATCTACG
gi|97530 : CG-TTGTTGAATTATACACACTCGTGTACAGTGG----------------------ATATT----TGTTATAATGAAACCTGAAGAAAttgttgaattatacacactcgtgtacagtggatatttgttataatgaaacctgaagaaa
gi|97531 : tacgaggggcattcaataaattctgtcactaatggccttccgtagaaacaatgttacgtaagacatgaaaaactcgtgcaattgtttggggatgtatattcaatacatctaTAC-AGGTGCATTCAATAAAATTTGTCACTAATGGACTTCCGTAAAAATAATGTTG--CGTATGAACATGAAAA---TC-TCGTGCAATTGTTTGGGGATGTTTATTCAATAAACCTGCGAATTCT-CAATTCAATCCGATTATAAATGACAA---AGATAATCA-TTGT
gi|97532 : TAC-AGGTGCATTCGATAAAATTTGTCAATAATGGCCTACCGTAGAAATAATGTTG--CATATGAACATGAAAA---TA-TCGTGCAATTGTTTGGGGATGTTTATTCAATACACCTGCGAATTCT-CAATTTAATCCGAATATAAATGACCA---AGATAATCA-TTGT
gi|97533 : TACGAGGGGGTTTCAATACATTCTGTCACTAATGCGTTTCTGTAGAA--AACGTCGTACACAACAGCAC-ACAA---AT-TTGTGCAACTA----------------CAA-ACA--TGC-AACTATGTGTTTTAATC-------AAATAACCATGGAGATA-TCACTTGTTGAGTTTCAGGCACACATGTAAAATGGCT--------------------ATATTTCAATGCTATGAAAAAAC---AAGAAA
gi|97534 : CGAGGGGCATTCAATATATTCTGTCAC---TGGTCTTC
gi|97535 : TAAGAACATGAAAC---AC-TCGTGCAACT-------------TATTCAATACACCTGCGAATTCT-CAATTCAACCTGATTATAATTGACCA---ATATATTCA-TTGTTGAATTATGCAAA--CATGTTCAGTGGCT--------------------ATGCTTCAATGTCATAATGAAATCTGAAGAAAAA
Alignments
lowQualScore : 22222222222222222222
lowQualScore : 0 33 1 444444 1 2 2 444 2 0 11111111111111111111
lowQualScore : . .. . ...... . . . ... . . ....................
lowQualScore : 1 44 1 999999 9 5 9 444 4 7 77777777777777777777
consensus : TACGAGGGGCATTCAATAAATTCTGTCACTAATGGCCTTCCGTAGAAACAATGTTG--CGTAAGAACATGAAAA---AC-TCGTGCAATTGTTTGGGGATGTTTATTCAATACACCTGCGAATTCT-CAATTTAATCCGATTATAATTGACCA---AGATATTCA-TTGTTGAATTATACACACTCGTGTACAGTGGCT--------------------ATATTTCAATGTCATAATGAAACCTGAAGAAAAA
Reference ( family-824 ) : TACGAGGGGCATTCAATAAATTCTGTCACTAATGGCCTTCCGTAGAAACAATGTTG--CGTAAGAACATGAAAA---AC-TCGTGCAATTGTTTGGGGATGTTTATTCAATACACCTGCGAATTCT-CAATTTAATCCGATTATAATTGACCA---AGATATTCA-TTGTTGAATTATACACACTCGTGTACAGTGGCT--------------------ATATTTCAATGTCATAATGAAACCTGAAGAAAAA
gi|97516 : TACGACGGGCATTCAATCAATTCTGTCACTAATGGCCTTCCGTAGAAACAATGTTG--TGTAAGAACATAAACA---AC-TTGTGCAATTGTTTTGGGAGGTTTATTCAATACACCTGCAAATTCT-CAATTTAATCCGATTACAATTGACCA---AGATATTCA-TTGTTGAATTATACACACTCGTGTACAGTGGCT--------------------ATATTTCAATGTCATAATGAAACCGGAAGAAAAA
gi|97517 : aTATGAGGGGTATTCAATATATTCTGTCACTAATGGCCTTCCGTAGAAACAATGTTG--CGTAAGAACATAAAAA---AAATTGGGGGATTGTTTGGGGATGTGTATTCAATACACCTGCGAATAAT-CAATTTAATCTGATTATAACTGATTG---AGATATTCA-TTGTTGAATTATACACACTCGTGTATAGTGGCT--------------------ATATTTCAGTGTCATAATAAAACCTGAAGAAAAA
gi|97518 : aATGAGGGGCATTGAATATATTCTGTCACTAATGGCCTTCCATAGAAACAATGCTG--TGTAAGAATATTAGAA---AA-TTGGGGGATTGTTTGGGGATGTGTAATCAATACACCTGCAAATAAT-CAATTTAATCCGAATATAACTGACCG---AGATATTCA-TTGTTGAATTATACACACTCATGTACAGTGGCT--------------------ATATTTCAATGTCATATTGAAACCTGAAGAAAAA
gi|97519 : acTACGAGGGGCATTCAATAAATTCTGTCACTAATGGCCTTCCGTTGAAACAATGTTG--T-TAAGAACATGAAC-----C-TCGTGCAATTGATTGGGGATGTTTATGCAATACAGCTATGAATTCT-CAATATATTCTGATTATTATTGACCA---AAATATTCA-TTGTTGAATTATACCCACTCATGTACAGTGGCT--------------------ATATATCAATGTCATATTGAAACCTGAATAAAA
gi|97520 : aACGAGAGGCATTCAATAAATTCTGCCACTAATGGCCATCCGTAGAAACAATGTTG--CGTAAGAACATGAAAA---CC-TCATGCAATTGTTTGAGGATGTTTATGCAAT-----TTCAAATTTT-CAATTTAATCCGATTATAATTGACCA---AGATATTCA-TTGTTGAAGTTTACACACTCATGTACAGTGGTT--------------------ATATTTCAATGTCATATTAAAACATGACCAAAA
gi|97521 : acTACGAGGGGCATTCAGTATATTCTGTCAC---TGGTCTTC
gi|97522 : aCGAGGGGCATTCAATAAATTCTGTCACTTATGGCC----------------TTC--CGTAAAAACA-----A---AG-TTGCGTAA--------GAACAT------AAAAAAC--GCGAATTCT-CAGTGTAATCCGAATATAATTGAAGA---AGATATTCA-TTGTTGAATTATAAACACTCATGTACAGCGGCT--------------------ATATTTCAATGTCGTAATTAAACCTGAAAACAAA
gi|97523 : attTACGAGGGACATTCAATAAATTATGTCAT---TGGTCTTC
gi|97524 : aTACGAGGGGCATTCAATAAATTCTGTCACTAATGGCCTTCCATAGAAACAATGTTG--CGTAAGAACATGAACA---AC-TCGTGCACTTGTTTGGGGATGTTTATTCACTACACCTGCGAGTTCT-CAATTTAATCCGATTATAATTGACCA---AGATATCCA-TCGTTGAATTATACATACTCATATAGAGTGGCT--------------------ATATTTAAATGTCATAATGAAACCTGAAGAAAAA
gi|97525 : TACGACGGGCATTCAATAATTTCTGTCACTAATGGCCTTCCGTAGAAACATTGCTG--CGTAAGAACATAAAAAAAAAC-TCGTGCAATTGTTTTGGAATGTCTATTCAATACACCTGCGAATTCT-CAATTTAATCCGATTATAATTGACCA---AGATATTCA-TTGTTGAATTAT--ACACTCGAGTACAGTGGCT--------------------ATATTTCAATGTCATAATGAAACCTGAAGAAAAA
gi|97526 : TACGAGGGTCATTCAGTAAATGCTGTCGTTAAATGCGTTCCGTAGAAACAATGTTG--CATAAGAACATAAAAA---AC-TCGTGCAATTGTTTGGGGATGTTTATTCAACACACCTGCGAATTTT-CAAATTAATCAGACTATAATTGACCA---AAATATTCA-TTGTTAAATTATACATACTAATGTACAGTGGCT--------------------AGGTTTCAATGTCATAATAACACCTGAAGAAAA
gi|97527 : TACGAGGGGCATTCAATAAATTTTGTCACTAATGGTCTTCCGTAGAAACAATGATG--CGTAAGAACATCAAAA---GC-TCGTGCAGTTGTTTGGGGACGATTATTCAATACACCTTCGAATTCT-CAATTTAATCCGAGTATACTTGACCA---AGATATTCA-TTGTTGAATTATACATACTCGTTTACAGTGACT--------------------ATGTTTCAATGTCATAAAGAAA
gi|97528 : TACGAGGGGCATTCAATAAATTCTGTCACAAATGGCCTTCCGTTGAAACAATGTTG--CGTAAGAACATGAAAA---A------GCAATTGTTTGGAGATGTTTATTCAATACACCTCCAAATTCT-CAATTTAATCCGATTGTGATTGACCA---AGATACTCA-TTG-TGAATTGTGCACACTCATGTACACTGGTTATAACAGAATAGAACAGGTTATATTTCAATGTCATAATGAAACCTGAAGAAAAA
gi|97529 : TACGAGTGGCATATAATATATTATGTCACTTATGGCCTTCCGTAGAAACAATGTTG--CGTACGAACATGAAAA---AT-TCATGCAATTGTTTGGGGATGTTTATTCAATACACCTGCGAATTCT-CAATTTAA----A-------TGACCG---AGATATGTG-TTGTTGAATTATACACACTCATGTACAGTGACT--------------------GTATTTCAATGTCATAATGAAACCTGAAGAAAAA
gi|97530 : TACGAGGGGCATTCAATAAATTCTGTCACTAATGGCCTTCCGTAGAAACAATGTTA--CGTAAG-ACATGAAAA---AC-TCGTGCAATTGTTTGGGGATGTATATTCAATACATCTACG
gi|97530 : CG-TTGTTGAATTATACACACTCGTGTACAGTGG----------------------ATATT----TGTTATAATGAAACCTGAAGAAAttgttgaattatacacactcgtgtacagtggatatttgttataatgaaacctgaagaaa
gi|97531 : tacgaggggcattcaataaattctgtcactaatggccttccgtagaaacaatgttacgtaagacatgaaaaactcgtgcaattgtttggggatgtatattcaatacatctaTAC-AGGTGCATTCAATAAAATTTGTCACTAATGGACTTCCGTAAAAATAATGTTG--CGTATGAACATGAAAA---TC-TCGTGCAATTGTTTGGGGATGTTTATTCAATAAACCTGCGAATTCT-CAATTCAATCCGATTATAAATGACAA---AGATAATCA-TTGT
gi|97532 : TAC-AGGTGCATTCGATAAAATTTGTCAATAATGGCCTACCGTAGAAATAATGTTG--CATATGAACATGAAAA---TA-TCGTGCAATTGTTTGGGGATGTTTATTCAATACACCTGCGAATTCT-CAATTTAATCCGAATATAAATGACCA---AGATAATCA-TTGT
gi|97533 : TACGAGGGGGTTTCAATACATTCTGTCACTAATGCGTTTCTGTAGAA--AACGTCGTACACAACAGCAC-ACAA---AT-TTGTGCAACTA----------------CAA-ACA--TGC-AACTATGTGTTTTAATC-------AAATAACCATGGAGATA-TCACTTGTTGAGTTTCAGGCACACATGTAAAATGGCT--------------------ATATTTCAATGCTATGAAAAAAC---AAGAAA
gi|97534 : CGAGGGGCATTCAATATATTCTGTCAC---TGGTCTTC
gi|97535 : TAAGAACATGAAAC---AC-TCGTGCAACT-------------TATTCAATACACCTGCGAATTCT-CAATTCAACCTGATTATAATTGACCA---ATATATTCA-TTGTTGAATTATGCAAA--CATGTTCAGTGGCT--------------------ATGCTTCAATGTCATAATGAAATCTGAAGAAAAA
blockSeqs : TA A AAAAC G G T TGG C ATAACAGAATAGAACAGGTT
blockSeqs : . T AAA G . A . . .
blockSeqs : . G AA T . T . . .
blockSeqs : . G CC T . T . . .
blockSeqs : . G AG T . A . . .
blockSeqs : . A AC C . T . . .
blockSeqs : . A AC T . T . . .
blockSeqs : . C GC T . C . . .
blockSeqs : . G AT T . G . . .
blockSeqs : . G AC T . T . . .
blockSeqs : . G TC A . T . . .
blockSeqs : . G TA T . A . . .
blockSeqs : . G AT T . T . . .
blockSeqs : . G AC . . . . . .
blockSeqs : . . C . . . . .
blockSeqs : . A . .
blockSeqCons :
originalCons : TACGAGGGGCATTCAATAAATTCTGTCACTAATGGCCTTCCGTAGAAACAATGTTG--CGTAAGAACATGAAAA---AC-TCGTGCAATTGTTTGGGGATGTTTATTCAATACACCTGCGAATTCT-CAATTTAATCCGATTATAATTGACCA---AGATATTCA-TTGTTGAATTATACACACTCGTGTACAGTGGCT--------------------ATATTTCAATGTCATAATGAAACCTGAAGAAAAA
finalCons : TACGAGGGGCATTCAATAAATTCTGTCACTAATGGCCTTCCGTAGAAACAATGTTG--CGTAAGAACATGAAAA---AC-TCGTGCAATTGTTTGGGGATGTTTATTCAATACACCTGCGAATTCT-CAATTTAATCCGATTATAATTGACCA---AGATATTCA-TTGTTGAATTATACACACTCGTGTACAGTGGCT--------------------ATATTTCAATGTCATAATGAAACCTGAAGAAAAA
Alignments
lowQualScore : 22222222222222222222
lowQualScore : 0 33 1 444444 1 2 2 444 2 0 11111111111111111111
lowQualScore : . .. . ...... . . . ... . . ....................
lowQualScore : 1 44 1 999999 9 5 9 444 4 7 77777777777777777777
consensus : TACGAGGGGCATTCAATAAATTCTGTCACTAATGGCCTTCCGTAGAAACAATGTTG--CGTAAGAACATGAAAA---AC-TCGTGCAATTGTTTGGGGATGTTTATTCAATACACCTGCGAATTCT-CAATTTAATCCGATTATAATTGACCA---AGATATTCA-TTGTTGAATTATACACACTCGTGTACAGTGGCT--------------------ATATTTCAATGTCATAATGAAACCTGAAGAAAAA
Reference ( family-824 ) : TACGAGGGGCATTCAATAAATTCTGTCACTAATGGCCTTCCGTAGAAACAATGTTG--CGTAAGAACATGAAAA---AC-TCGTGCAATTGTTTGGGGATGTTTATTCAATACACCTGCGAATTCT-CAATTTAATCCGATTATAATTGACCA---AGATATTCA-TTGTTGAATTATACACACTCGTGTACAGTGGCT--------------------ATATTTCAATGTCATAATGAAACCTGAAGAAAAA
gi|97516 : TACGACGGGCATTCAATCAATTCTGTCACTAATGGCCTTCCGTAGAAACAATGTTG--TGTAAGAACATAAACA---AC-TTGTGCAATTGTTTTGGGAGGTTTATTCAATACACCTGCAAATTCT-CAATTTAATCCGATTACAATTGACCA---AGATATTCA-TTGTTGAATTATACACACTCGTGTACAGTGGCT--------------------ATATTTCAATGTCATAATGAAACCGGAAGAAAAA
gi|97517 : aTATGAGGGGTATTCAATATATTCTGTCACTAATGGCCTTCCGTAGAAACAATGTTG--CGTAAGAACATAAAAA---AAATTGGGGGATTGTTTGGGGATGTGTATTCAATACACCTGCGAATAAT-CAATTTAATCTGATTATAACTGATTG---AGATATTCA-TTGTTGAATTATACACACTCGTGTATAGTGGCT--------------------ATATTTCAGTGTCATAATAAAACCTGAAGAAAAA
gi|97518 : aATGAGGGGCATTGAATATATTCTGTCACTAATGGCCTTCCATAGAAACAATGCTG--TGTAAGAATATTAGAA---AA-TTGGGGGATTGTTTGGGGATGTGTAATCAATACACCTGCAAATAAT-CAATTTAATCCGAATATAACTGACCG---AGATATTCA-TTGTTGAATTATACACACTCATGTACAGTGGCT--------------------ATATTTCAATGTCATATTGAAACCTGAAGAAAAA
gi|97519 : acTACGAGGGGCATTCAATAAATTCTGTCACTAATGGCCTTCCGTTGAAACAATGTTG--T-TAAGAACATGAAC-----C-TCGTGCAATTGATTGGGGATGTTTATGCAATACAGCTATGAATTCT-CAATATATTCTGATTATTATTGACCA---AAATATTCA-TTGTTGAATTATACCCACTCATGTACAGTGGCT--------------------ATATATCAATGTCATATTGAAACCTGAATAAAA
gi|97520 : aACGAGAGGCATTCAATAAATTCTGCCACTAATGGCCATCCGTAGAAACAATGTTG--CGTAAGAACATGAAAA---CC-TCATGCAATTGTTTGAGGATGTTTATGCAAT-----TTCAAATTTT-CAATTTAATCCGATTATAATTGACCA---AGATATTCA-TTGTTGAAGTTTACACACTCATGTACAGTGGTT--------------------ATATTTCAATGTCATATTAAAACATGACCAAAA
gi|97521 : acTACGAGGGGCATTCAGTATATTCTGTCAC---TGGTCTTC
gi|97522 : aCGAGGGGCATTCAATAAATTCTGTCACTTATGGCC----------------TTC--CGTAAAAACA-----A---AG-TTGCGTAA--------GAACAT------AAAAAAC--GCGAATTCT-CAGTGTAATCCGAATATAATTGAAGA---AGATATTCA-TTGTTGAATTATAAACACTCATGTACAGCGGCT--------------------ATATTTCAATGTCGTAATTAAACCTGAAAACAAA
gi|97523 : attTACGAGGGACATTCAATAAATTATGTCAT---TGGTCTTC
gi|97524 : aTACGAGGGGCATTCAATAAATTCTGTCACTAATGGCCTTCCATAGAAACAATGTTG--CGTAAGAACATGAACA---AC-TCGTGCACTTGTTTGGGGATGTTTATTCACTACACCTGCGAGTTCT-CAATTTAATCCGATTATAATTGACCA---AGATATCCA-TCGTTGAATTATACATACTCATATAGAGTGGCT--------------------ATATTTAAATGTCATAATGAAACCTGAAGAAAAA
gi|97525 : TACGACGGGCATTCAATAATTTCTGTCACTAATGGCCTTCCGTAGAAACATTGCTG--CGTAAGAACATAAAAAAAAAC-TCGTGCAATTGTTTTGGAATGTCTATTCAATACACCTGCGAATTCT-CAATTTAATCCGATTATAATTGACCA---AGATATTCA-TTGTTGAATTAT--ACACTCGAGTACAGTGGCT--------------------ATATTTCAATGTCATAATGAAACCTGAAGAAAAA
gi|97526 : TACGAGGGTCATTCAGTAAATGCTGTCGTTAAATGCGTTCCGTAGAAACAATGTTG--CATAAGAACATAAAAA---AC-TCGTGCAATTGTTTGGGGATGTTTATTCAACACACCTGCGAATTTT-CAAATTAATCAGACTATAATTGACCA---AAATATTCA-TTGTTAAATTATACATACTAATGTACAGTGGCT--------------------AGGTTTCAATGTCATAATAACACCTGAAGAAAA
gi|97527 : TACGAGGGGCATTCAATAAATTTTGTCACTAATGGTCTTCCGTAGAAACAATGATG--CGTAAGAACATCAAAA---GC-TCGTGCAGTTGTTTGGGGACGATTATTCAATACACCTTCGAATTCT-CAATTTAATCCGAGTATACTTGACCA---AGATATTCA-TTGTTGAATTATACATACTCGTTTACAGTGACT--------------------ATGTTTCAATGTCATAAAGAAA
gi|97528 : TACGAGGGGCATTCAATAAATTCTGTCACAAATGGCCTTCCGTTGAAACAATGTTG--CGTAAGAACATGAAAA---A------GCAATTGTTTGGAGATGTTTATTCAATACACCTCCAAATTCT-CAATTTAATCCGATTGTGATTGACCA---AGATACTCA-TTG-TGAATTGTGCACACTCATGTACACTGGTTATAACAGAATAGAACAGGTTATATTTCAATGTCATAATGAAACCTGAAGAAAAA
gi|97529 : TACGAGTGGCATATAATATATTATGTCACTTATGGCCTTCCGTAGAAACAATGTTG--CGTACGAACATGAAAA---AT-TCATGCAATTGTTTGGGGATGTTTATTCAATACACCTGCGAATTCT-CAATTTAA----A-------TGACCG---AGATATGTG-TTGTTGAATTATACACACTCATGTACAGTGACT--------------------GTATTTCAATGTCATAATGAAACCTGAAGAAAAA
gi|97530 : TACGAGGGGCATTCAATAAATTCTGTCACTAATGGCCTTCCGTAGAAACAATGTTA--CGTAAG-ACATGAAAA---AC-TCGTGCAATTGTTTGGGGATGTATATTCAATACATCTACG
gi|97530 : CG-TTGTTGAATTATACACACTCGTGTACAGTGG----------------------ATATT----TGTTATAATGAAACCTGAAGAAAttgttgaattatacacactcgtgtacagtggatatttgttataatgaaacctgaagaaa
gi|97531 : tacgaggggcattcaataaattctgtcactaatggccttccgtagaaacaatgttacgtaagacatgaaaaactcgtgcaattgtttggggatgtatattcaatacatctaTAC-AGGTGCATTCAATAAAATTTGTCACTAATGGACTTCCGTAAAAATAATGTTG--CGTATGAACATGAAAA---TC-TCGTGCAATTGTTTGGGGATGTTTATTCAATAAACCTGCGAATTCT-CAATTCAATCCGATTATAAATGACAA---AGATAATCA-TTGT
gi|97532 : TAC-AGGTGCATTCGATAAAATTTGTCAATAATGGCCTACCGTAGAAATAATGTTG--CATATGAACATGAAAA---TA-TCGTGCAATTGTTTGGGGATGTTTATTCAATACACCTGCGAATTCT-CAATTTAATCCGAATATAAATGACCA---AGATAATCA-TTGT
gi|97533 : TACGAGGGGGTTTCAATACATTCTGTCACTAATGCGTTTCTGTAGAA--AACGTCGTACACAACAGCAC-ACAA---AT-TTGTGCAACTA----------------CAA-ACA--TGC-AACTATGTGTTTTAATC-------AAATAACCATGGAGATA-TCACTTGTTGAGTTTCAGGCACACATGTAAAATGGCT--------------------ATATTTCAATGCTATGAAAAAAC---AAGAAA
gi|97534 : CGAGGGGCATTCAATATATTCTGTCAC---TGGTCTTC
gi|97535 : TAAGAACATGAAAC---AC-TCGTGCAACT-------------TATTCAATACACCTGCGAATTCT-CAATTCAACCTGATTATAATTGACCA---ATATATTCA-TTGTTGAATTATGCAAA--CATGTTCAGTGGCT--------------------ATGCTTCAATGTCATAATGAAATCTGAAGAAAAA