lowQualScore : 111 11111111
lowQualScore : 2 333 000 99999 22 55555555 4
lowQualScore : . ... ... ..... .. ........ .
lowQualScore : 1 777 999 33333 99 22222222 6
consensus : CAGAGAACAACAGAACTTAT-TACACTGCATAACTGC---GAG-AGTG----ATGAAATAAACATAGT--GG--GA----TAGTACCTGATGGGAAGGAGAT
Reference ( gi|36707 ) : CAGAGAACAACAGAACTTAT-TACACTGCATAACTGC---GAG-ACTG----GTGAAATAAACATAGT--GG--TA----TAGTACCTGATGGGAAAGAGAT
gi|36708 : CAGAGAACAACAGAACTTAT-TACACTGCATAACTGC---GAG-ACTG----GTGAAATAAACATAGT--GG--TA----TAGAACCTGATGGGAAAGAGAT
gi|36705 : CAGAGAACAACAGAACTTAT-TACACTGCCTATCTGC---CAG-TGTG----ATGAAATAAACATAGT--GG--GA----TAGTACCTGATGGGAAGGAGAT
gi|36706 : CAGAGAACAACAGAACTTAT-AACATTGCATAACTGC---GAT-AGTG----ATGAAACAAACATAGT--TG--GA----TAGTACCTGATGGGAAGGAGATgct
gi|36713 : CAGAGAACAACAGAACTTAT-TACACTGCATAACTGC---GAC-ACTG----ATGAAATAAACATAGT--GG--gct
gi|36709 : CAGAGAACAACAAGACTTAT-TACACTGCATAACTGCTGTGAG-GGTG----ATGCAATAAACATAGT--GGGATAGGCCTAGTACCTGATGGGAAGGACATgaagatggga
gi|36714 : CAGAGAACAACAGAACTTAT-TACACTGCACAACTGC---GAC-ACTG----ATGAAATAAACATAGT--GG--gct
gi|36710 : CAGAGAACAAAAGAACTTAA-TACATTGCATAACTGT---GAG---TG----ACGAAATAAACATAGT--GG--GA----TATTACCAAATGGGAAGGAGAgaagatggga
gi|36712 : CACAGAACAACAGAACTTAT-TACACTGCATAACTGC---GAG-AGTG----ATGAAATATATATCGC--AG--GA----TAGTACCTatgct
gi|36711 : CAGAGAACAACAGGACGTAT-TACACTACATAACTGC---AAC-AGTG----ATGAAATTAACATAGTAGGA--TAGT--TAGTACCCAATGGGAAGGTGAT
gi|36717 : CAGAGAACAACA--ACTTAC-TACACTGCATAACTGC---GAG---TG----TTGAAATAATCATAAT--GG--AA----TATTGCCTGCTGGGAAg
gi|36716 : CAGAGAACAACAGAACTTAT-TACACTGCATA------------GCTG----ATAAAATAAACATAGT--GG--GA----TAGTACCTg
gi|36715 : CAGGGAACAACAGAAGTT---------GCATAACTGC---TAG-AGTA----ATAATATAAACATAGT--GG--GC----TAGTACCTAATAGGAAGGAGAT
gi|36718 : CAGAGAACAA-AGAAC--------ACTGCATAACTGC---GAGAAATGTGTTGTGAAATAAACATAGT--GG--gct
gi|36719 : AGAGAACAACAGAACCTAA-TACAATGCATAACTGC---GAG-AGTG----ATGAAATAAATATAGT--GG--GA----TTGTACCTGATGAGAAGGAAATga
gi|36720 : GATAACAGTAGAACTTTTCTATACTGCACAACAGC---AAG-AGTG----ATGAAATAAACATAGT--GG--GA----TAGTACCAGATGGGAAGGAGAT
gi|36721 : AGAACAACAGAATTTAT-TAAATTGCATAACTGC---GAG-AGTG----ATAAAA-AAACATAGT--GG--GA----TAGTACCTGATGGAAAGGATATgct
gi|36722 : AACAG-AGAACTTAT-TACACTGCAATACTGT---GAG-AATG----ATGAAATAAACATAAT--GG--GA-----A------GATGGGAAgct
gi|36723 : CGATAGA-CTTAT-TACACTGCATAACTGC---GAA-AGCG----ATAAAATAAACACAGT--TG--GA----TAGTACCTGATGGGAAGGAGATgatgacaatgct
gi|36724 : GAACTTAT-TACACTGCATAACTGC---AAA-AGTG----ATGAAATAAACATGAT--GG--g
Alignments
lowQualScore : 1111111
lowQualScore : 2 333 333 22 0000000 0
lowQualScore : . ... ... .. ....... .
lowQualScore : 0 555 555 88 1111111 5
consensus : CAGAGAACAACAGAACTTAT-TACACTGCATAACTGC---GAGA---GTG--ATGAAATAAACATAGTGGGA------TAGTACCTGATGGGAAGGAGAT
Reference ( family-821 ) : CAGAGAACAACAGAACTTAT-TACACTGCATAACTGC---GAGA---GTG--ATGAAATAAACATAGTGGGA------TAGTACCTGATGGGAAGGAGAT
gi|36705 : CAGAGAACAACAGAACTTAT-TACACTGCCTATCTGC---CAGT---GTG--ATGAAATAAACATAGTGGGA------TAGTACCTGATGGGAAGGAGAT
gi|36706 : CAGAGAACAACAGAACTTAT-AACATTGCATAACTGC---GATA---GTG--ATGAAACAAACATAGTTGGA------TAGTACCTGATGGGAAGGAGATgct
gi|36707 : CAGAGAACAACAGAACTTAT-TACACTGCATAACTGC---GAGA---CTG--GTGAAATAAACATAGTGGTA------TAGTACCTGATGGGAAAGAGATgct
gi|36708 : CAGAGAACAACAGAACTTAT-TACACTGCATAACTGC---GAGA---CTG--GTGAAATAAACATAGTGGTA------TAGAACCTGATGGGAAAGAGAT
gi|36709 : CAGAGAACAACAAGACTTAT-TACACTGCATAACTGCTGTGAGG---GTG--ATGCAATAAACATAGTGGGATAGGCCTAGTACCTGATGGGAAGGACAT
gi|36710 : CAGAGAACAAAAGAACTTAA-TACATTGCATAACTGT---GAG-----TG--ACGAAATAAACATAGTGGGA------TATTACCAAATGGGAAGGAGAgct
gi|36711 : CAGAGAACAACAGGACGTAT-TACACTACATAACTGC---AACA---GTG--ATGAAATTAACATAGTAGGATAGT--TAGTACCCAATGGGAAGGTGATatgct
gi|36712 : CACAGAACAACAGAACTTAT-TACACTGCATAACTGC---GAGA---GTG--ATGAAATATATATCGCAGGA------TAGTACCTg
gi|36713 : CAGAGAACAACAGAACTTAT-TACACTGCATAACTGC---GACA---CTG--ATGAAATAAACATAGTGGGA-------A------GATGGGA
gi|36714 : CAGAGAACAACAGAACTTAT-TACACTGCACAACTGC---GACA---CTG--ATGAAATAAACATAGTGGGA-------A------GATGGGA
gi|36715 : CAGGGAACAACAGAAGTT---------GCATAACTGC---TAGA---GTA--ATAATATAAACATAGTGGGC------TAGTACCTAATAGGAAGGAGAT
gi|36716 : CAGAGAACAACAGAACTTAT-TACACTGCATAGC--------------TG--ATAAAATAAACATAGTGGGA------TAGTACCTgct
gi|36717 : CAGAGAACAACA--ACTTAC-TACACTGCATAACTGC---GAGT---GT----TGAAATAATCATAATGGAA------TATTGCCTGCTGGGAAG
gi|36718 : CAGAGAACAA-AGAAC--------ACTGCATAACTGC---GAGAAATGTGTTGTGAAATAAACATAGTGGGA------
gi|36719 : AGAGAACAACAGAACCTAA-TACAATGCATAACTGC---GAGA---GTG--ATGAAATAAATATAGTGGGA------TTGTACCTGATGAGAAGGAAAT
gi|36720 : GATAACAGTAGAACTTTTCTATACTGCACAACAGC---AAGA---GTG--ATGAAATAAACATAGTGGGA------TAGTACCAGATGGGAAGGAGAT
gi|36721 : AGAACAACAGAATTTAT-TAAATTGCATAACTGC---GAGA---GTG--ATAAAA-AAACATAGTGGGA------TAGTACCTGATGGAAAGGATATgct
gi|36722 : AACAG-AGAACTTAT-TACACTGCAATACTGT---GAGA---ATG--ATGAAATAAACATAATGGGA-------A------GATGGGAAGgct
gi|36723 : CGATAGA-CTTAT-TACACTGCATAACTGC---GAAA---GCG--ATAAAATAAACACAGTTGGA------TAGTACCTGATGGGAAGGAGATatgacaatgct
gi|36724 : GAACTTAT-TACACTGCATAACTGC---AAAA---GTG--ATGAAATAAACATGATGGGA------AAGg
Alignments
lowQualScore : 1111111
lowQualScore : 2 333 333 22 0000000 0
lowQualScore : . ... ... .. ....... .
lowQualScore : 0 555 555 88 1111111 5
consensus : CAGAGAACAACAGAACTTAT-TACACTGCATAACTGC---GAGA---GTG--ATGAAATAAACATAGTGGGA------TAGTACCTGATGGGAAGGAGAT
Reference ( family-821 ) : CAGAGAACAACAGAACTTAT-TACACTGCATAACTGC---GAGA---GTG--ATGAAATAAACATAGTGGGA------TAGTACCTGATGGGAAGGAGAT
gi|36705 : CAGAGAACAACAGAACTTAT-TACACTGCCTATCTGC---CAGT---GTG--ATGAAATAAACATAGTGGGA------TAGTACCTGATGGGAAGGAGAT
gi|36706 : CAGAGAACAACAGAACTTAT-AACATTGCATAACTGC---GATA---GTG--ATGAAACAAACATAGTTGGA------TAGTACCTGATGGGAAGGAGATgct
gi|36707 : CAGAGAACAACAGAACTTAT-TACACTGCATAACTGC---GAGA---CTG--GTGAAATAAACATAGTGGTA------TAGTACCTGATGGGAAAGAGATgct
gi|36708 : CAGAGAACAACAGAACTTAT-TACACTGCATAACTGC---GAGA---CTG--GTGAAATAAACATAGTGGTA------TAGAACCTGATGGGAAAGAGAT
gi|36709 : CAGAGAACAACAAGACTTAT-TACACTGCATAACTGCTGTGAGG---GTG--ATGCAATAAACATAGTGGGATAGGCCTAGTACCTGATGGGAAGGACAT
gi|36710 : CAGAGAACAAAAGAACTTAA-TACATTGCATAACTGT---GAG-----TG--ACGAAATAAACATAGTGGGA------TATTACCAAATGGGAAGGAGAgct
gi|36711 : CAGAGAACAACAGGACGTAT-TACACTACATAACTGC---AACA---GTG--ATGAAATTAACATAGTAGGATAGT--TAGTACCCAATGGGAAGGTGATatgct
gi|36712 : CACAGAACAACAGAACTTAT-TACACTGCATAACTGC---GAGA---GTG--ATGAAATATATATCGCAGGA------TAGTACCTg
gi|36713 : CAGAGAACAACAGAACTTAT-TACACTGCATAACTGC---GACA---CTG--ATGAAATAAACATAGTGGGA-------A------GATGGGA
gi|36714 : CAGAGAACAACAGAACTTAT-TACACTGCACAACTGC---GACA---CTG--ATGAAATAAACATAGTGGGA-------A------GATGGGA
gi|36715 : CAGGGAACAACAGAAGTT---------GCATAACTGC---TAGA---GTA--ATAATATAAACATAGTGGGC------TAGTACCTAATAGGAAGGAGAT
gi|36716 : CAGAGAACAACAGAACTTAT-TACACTGCATAGC--------------TG--ATAAAATAAACATAGTGGGA------TAGTACCTgct
gi|36717 : CAGAGAACAACA--ACTTAC-TACACTGCATAACTGC---GAGT---GT----TGAAATAATCATAATGGAA------TATTGCCTGCTGGGAAG
gi|36718 : CAGAGAACAA-AGAAC--------ACTGCATAACTGC---GAGAAATGTGTTGTGAAATAAACATAGTGGGA------
gi|36719 : AGAGAACAACAGAACCTAA-TACAATGCATAACTGC---GAGA---GTG--ATGAAATAAATATAGTGGGA------TTGTACCTGATGAGAAGGAAAT
gi|36720 : GATAACAGTAGAACTTTTCTATACTGCACAACAGC---AAGA---GTG--ATGAAATAAACATAGTGGGA------TAGTACCAGATGGGAAGGAGAT
gi|36721 : AGAACAACAGAATTTAT-TAAATTGCATAACTGC---GAGA---GTG--ATAAAA-AAACATAGTGGGA------TAGTACCTGATGGAAAGGATATgct
gi|36722 : AACAG-AGAACTTAT-TACACTGCAATACTGT---GAGA---ATG--ATGAAATAAACATAATGGGA-------A------GATGGGAAGgct
gi|36723 : CGATAGA-CTTAT-TACACTGCATAACTGC---GAAA---GCG--ATAAAATAAACACAGTTGGA------TAGTACCTGATGGGAAGGAGATatgacaatgct
gi|36724 : GAACTTAT-TACACTGCATAACTGC---AAAA---GTG--ATGAAATAAACATGATGGGA------AAGg
blockSeqs : C TGT AAT TT TAGGCCT
blockSeqs : . . . . TAGTT
blockSeqs : . . . . T
blockSeqs : . . . . T
blockSeqs : . . . . T
blockSeqs : . . . . T
blockSeqs : . . . . T
blockSeqs : . . . . T
blockSeqs : . . . . T
blockSeqs : . . . . T
blockSeqs : . . . . T
blockSeqs : . . . . T
blockSeqs : . . . . T
blockSeqs : . . . . T
blockSeqs : . . . . A
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . .
blockSeqCons :
originalCons : CAGAGAACAACAGAACTTAT-TACACTGCATAACTGC---GAGA---GTG--ATGAAATAAACATAGTGGGA------TAGTACCTGATGGGAAGGAGAT
finalCons : CAGAGAACAACAGAACTTAT-TACACTGCATAACTGC---GAGA---GTG--ATGAAATAAACATAGTGGGA------TAGTACCTGATGGGAAGGAGAT
Alignments
lowQualScore : 1111111
lowQualScore : 2 333 333 22 0000000 0
lowQualScore : . ... ... .. ....... .
lowQualScore : 0 555 555 88 1111111 5
consensus : CAGAGAACAACAGAACTTAT-TACACTGCATAACTGC---GAGA---GTG--ATGAAATAAACATAGTGGGA------TAGTACCTGATGGGAAGGAGAT
Reference ( family-821 ) : CAGAGAACAACAGAACTTAT-TACACTGCATAACTGC---GAGA---GTG--ATGAAATAAACATAGTGGGA------TAGTACCTGATGGGAAGGAGAT
gi|36705 : CAGAGAACAACAGAACTTAT-TACACTGCCTATCTGC---CAGT---GTG--ATGAAATAAACATAGTGGGA------TAGTACCTGATGGGAAGGAGAT
gi|36706 : CAGAGAACAACAGAACTTAT-AACATTGCATAACTGC---GATA---GTG--ATGAAACAAACATAGTTGGA------TAGTACCTGATGGGAAGGAGATgct
gi|36707 : CAGAGAACAACAGAACTTAT-TACACTGCATAACTGC---GAGA---CTG--GTGAAATAAACATAGTGGTA------TAGTACCTGATGGGAAAGAGATgct
gi|36708 : CAGAGAACAACAGAACTTAT-TACACTGCATAACTGC---GAGA---CTG--GTGAAATAAACATAGTGGTA------TAGAACCTGATGGGAAAGAGAT
gi|36709 : CAGAGAACAACAAGACTTAT-TACACTGCATAACTGCTGTGAGG---GTG--ATGCAATAAACATAGTGGGATAGGCCTAGTACCTGATGGGAAGGACAT
gi|36710 : CAGAGAACAAAAGAACTTAA-TACATTGCATAACTGT---GAG-----TG--ACGAAATAAACATAGTGGGA------TATTACCAAATGGGAAGGAGAgct
gi|36711 : CAGAGAACAACAGGACGTAT-TACACTACATAACTGC---AACA---GTG--ATGAAATTAACATAGTAGGATAGT--TAGTACCCAATGGGAAGGTGATatgct
gi|36712 : CACAGAACAACAGAACTTAT-TACACTGCATAACTGC---GAGA---GTG--ATGAAATATATATCGCAGGA------TAGTACCTg
gi|36713 : CAGAGAACAACAGAACTTAT-TACACTGCATAACTGC---GACA---CTG--ATGAAATAAACATAGTGGGA-------A------GATGGGA
gi|36714 : CAGAGAACAACAGAACTTAT-TACACTGCACAACTGC---GACA---CTG--ATGAAATAAACATAGTGGGA-------A------GATGGGA
gi|36715 : CAGGGAACAACAGAAGTT---------GCATAACTGC---TAGA---GTA--ATAATATAAACATAGTGGGC------TAGTACCTAATAGGAAGGAGAT
gi|36716 : CAGAGAACAACAGAACTTAT-TACACTGCATAGC--------------TG--ATAAAATAAACATAGTGGGA------TAGTACCTgct
gi|36717 : CAGAGAACAACA--ACTTAC-TACACTGCATAACTGC---GAGT---GT----TGAAATAATCATAATGGAA------TATTGCCTGCTGGGAAG
gi|36718 : CAGAGAACAA-AGAAC--------ACTGCATAACTGC---GAGAAATGTGTTGTGAAATAAACATAGTGGGA------
gi|36719 : AGAGAACAACAGAACCTAA-TACAATGCATAACTGC---GAGA---GTG--ATGAAATAAATATAGTGGGA------TTGTACCTGATGAGAAGGAAAT
gi|36720 : GATAACAGTAGAACTTTTCTATACTGCACAACAGC---AAGA---GTG--ATGAAATAAACATAGTGGGA------TAGTACCAGATGGGAAGGAGAT
gi|36721 : AGAACAACAGAATTTAT-TAAATTGCATAACTGC---GAGA---GTG--ATAAAA-AAACATAGTGGGA------TAGTACCTGATGGAAAGGATATgct
gi|36722 : AACAG-AGAACTTAT-TACACTGCAATACTGT---GAGA---ATG--ATGAAATAAACATAATGGGA-------A------GATGGGAAGgct
gi|36723 : CGATAGA-CTTAT-TACACTGCATAACTGC---GAAA---GCG--ATAAAATAAACACAGTTGGA------TAGTACCTGATGGGAAGGAGATatgacaatgct
gi|36724 : GAACTTAT-TACACTGCATAACTGC---AAAA---GTG--ATGAAATAAACATGATGGGA------AAGg