lowQualScore : 1 222222222
lowQualScore : 9 5 1 2 333 111111111
lowQualScore : . . . . ... .........
lowQualScore : 6 3 1 1 777 222222222
consensus : CAACTTAAAAGT-ATCTTTATTAACAGAGAACAACAGAACTTAT-TACACTGCATAACTGC---GAGA------GTGATGAAATAAACATAGT
Reference ( gi|98646 ) : CAACTTTAAAGT-ATCTTTATGAACAGAGAACAACAGAACTTAT-TACACTGCATAACTGC---GACA------CTGATGAAATAAACATAGT
gi|98647 : CAACTTTAAAGT-ATCTTTATGAACAGAGAACAACAGAACTTAT-TACACTGCACAACTGC---GACA------CTGATGAAATAAACATAGT
gi|98648 : CAACCTAAAAGT-ATCTTTATTAACAGAGAACAACAGAACTTAT-AACATTGCATAACTGC---GATA------GTGATGAAACAAACATAGT
gi|98649 : CAACTTAAAAGT-ATCTTTATTAACAGAGAACAACAGAACTTAT-TACACTGCCTATCTGC---CAGT------GTGATGAAATAAACATAGT
gi|98650 : CAACGTAAAAGT-ATCTTTATTAACACAGAACAACAGAACTTAT-TACACTGCATAACTGC---GAGA------GTGATGAAATATATAT
gi|98655 : CAACTTAAAAGT-ATCTTAAGTAACAGAGAACAACAGGACGTAT-TACACTACATAACTGC---AACA------GTGATGAAATTAACATAGT
gi|98651 : CAACTTAAAAGT-ATTTTTATAAACAGAGAACAAAAGAACTTAA-TACATTGCATAACTGT---G--A------GTGACGAAATAAACATAGT
gi|98652 : CAACTTAGAAAT-ATCTTTATTAATAGAGAACAACAGAACCTAA-TACAATGCATAACTGC---GAGA------GTGATGAAATAAATATAGT
gi|98654 : CAA-TTTAAAATCATCT-------CAGAGAACAACAGAACTTAT-TACACTGCATAACTGC---GAGA------CTGGTGAAATAAACATAGT
gi|98653 : CAA-TTTAAAATCATCT-------CAGAGAACAACAGAACTTAT-TACACTGCATAACTGC---GAGA------CTGGTGAAATAAACATAGT
gi|98656 : CAACTTAAAAAT-ATCTTTATTAACAGA--ACAACAGAATTTAT-TAAATTGCATAACTGC---GAGA------GTGATAAAA-AAACATAGT
gi|98657 : CAACCTAAAAGT-ATCTTTATGAACAGAGAACAA-AGA--------ACACTGCATAACTGC---GAGAAATGTGTTG-TGAAATAAACATAGT
gi|98658 : CAACTTAAAAGT-ATCTTTATTAACAGGGAACAACAGAAGT---------TGCATAACTGC---TAGA------GTAATAATATAAACATAGT
gi|98659 : AACTTAAAAGT-CTCTTTATTAACAGAGAACAAC--AACTTAC-TACACTGCATAACTGC---G--A------GTGTTGAAATAATCATAAT
gi|98660 : AACTTTAAAGT-ATCTTTATTAACAGAGAA--------CTTAT-TACACTGCAATACTGT---GAGA------ATGATGAAATAAACATAAT
gi|98661 : T-ATATTTATTA-CAGAGAACAACAAGACTTAT-TACACTGCATAACTGCTGTGAGG------GTGATGCAATAAACATAGT
gi|98662 : AACAGAGAACAACAGAACTTAT-TACACTGCATA-----------G------CTGATAAAATAAACATAGT
gi|98663 : GATAACAGTAGAACTTTTCTATACTGCACAACAGC---AAGA------GTGATGAAATAAACATAGT
gi|98664 : CGATAGA-CTTAT-TACACTGCATAACTGC---GAAA------GCGATAAAATAAACACAGT
gi|98665 : GAACTTAT-TACACTGCATAACTGC---AAAA------GTGATGAAATAAACAT
Alignments
lowQualScore : 0 2 4444 333 22
lowQualScore : . . .... ... ..
lowQualScore : 1 0 6666 555 88
consensus : CAACTTAAAAGTATCTTTATTAACAGAGAACAACAGAACTTAT-TACACTGCATAACTGC---GAGA---GTG--ATGAAATAAACATAGT
Reference ( family-818 ) : CAACTTAAAAGTATCTTTATTAACAGAGAACAACAGAACTTAT-TACACTGCATAACTGC---GAGA---GTG--ATGAAATAAACATAGT
gi|98646 : CAACTTTAAAGTATCTTTATGAACAGAGAACAACAGAACTTAT-TACACTGCATAACTGC---GACA---CTG--ATGAAATAAACATAGT
gi|98647 : CAACTTTAAAGTATCTTTATGAACAGAGAACAACAGAACTTAT-TACACTGCACAACTGC---GACA---CTG--ATGAAATAAACATAGT
gi|98648 : CAACCTAAAAGTATCTTTATTAACAGAGAACAACAGAACTTAT-AACATTGCATAACTGC---GATA---GTG--ATGAAACAAACATAGT
gi|98649 : CAACTTAAAAGTATCTTTATTAACAGAGAACAACAGAACTTAT-TACACTGCCTATCTGC---CAGT---GTG--ATGAAATAAACATAGT
gi|98650 : CAACGTAAAAGTATCTTTATTAACACAGAACAACAGAACTTAT-TACACTGCATAACTGC---GAGA---GTG--ATGAAATATATAT
gi|98651 : CAACTTAAAAGTATTTTTATAAACAGAGAACAAAAGAACTTAA-TACATTGCATAACTGT-----GA---GTG--ACGAAATAAACATAGT
gi|98652 : CAACTTAGAAATATCTTTATTAATAGAGAACAACAGAACCTAA-TACAATGCATAACTGC---GAGA---GTG--ATGAAATAAATATAGT
gi|98653 : CAATTTAAAATCATCT-------CAGAGAACAACAGAACTTAT-TACACTGCATAACTGC---GAGA---CTG--GTGAAATAAACATAGT
gi|98654 : CAATTTAAAATCATCT-------CAGAGAACAACAGAACTTAT-TACACTGCATAACTGC---GAGA---CTG--GTGAAATAAACATAGT
gi|98655 : CAACTTAAAAGTATCTTAAGTAACAGAGAACAACAGGACGTAT-TACACTACATAACTGC---AACA---GTG--ATGAAATTAACATAGT
gi|98656 : CAACTTAAAAATATCTTTATTAACAGA--ACAACAGAATTTAT-TAAATTGCATAACTGC---GAGA---GTG--ATAAAA-AAACATAGT
gi|98657 : CAACCTAAAAGTATCTTTATGAACAGAGAACAA-AGA--------ACACTGCATAACTGC---GAGAAATGTGTTGTGAAATAAACATAGT
gi|98658 : CAACTTAAAAGTATCTTTATTAACAGGGAACAACAGAAGT---------TGCATAACTGC---TAGA---GTA--ATAATATAAACATAGT
gi|98659 : AACTTAAAAGTCTCTTTATTAACAGAGAACAAC--AACTTAC-TACACTGCATAACTGC-----GA---GTG--TTGAAATAATCATAAT
gi|98660 : AACTTTAAAGTATCTTTATTAACAGAGAA--------CTTAT-TACACTGCAATACTGT---GAGA---ATG--ATGAAATAAACATAAT
gi|98661 : TATATTTATTA-CAGAGAACAACAAGACTTAT-TACACTGCATAACTGCTGTGAGG---GTG--ATGCAATAAACATAGT
gi|98662 : AACAGAGAACAACAGAACTTAT-TACACTGCATAGC--------------TG--ATAAAATAAACATAGT
gi|98663 : GATAACAGTAGAACTTTTCTATACTGCACAACAGC---AAGA---GTG--ATGAAATAAACATAGT
gi|98664 : CGATAGA-CTTAT-TACACTGCATAACTGC---GAAA---GCG--ATAAAATAAACACAGT
gi|98665 : GAACTTAT-TACACTGCATAACTGC---AAAA---GTG--ATGAAATAAACAT
Alignments
lowQualScore : 0 2 4444 333 22
lowQualScore : . . .... ... ..
lowQualScore : 1 0 6666 555 88
consensus : CAACTTAAAAGTATCTTTATTAACAGAGAACAACAGAACTTAT-TACACTGCATAACTGC---GAGA---GTG--ATGAAATAAACATAGT
Reference ( family-818 ) : CAACTTAAAAGTATCTTTATTAACAGAGAACAACAGAACTTAT-TACACTGCATAACTGC---GAGA---GTG--ATGAAATAAACATAGT
gi|98646 : CAACTTTAAAGTATCTTTATGAACAGAGAACAACAGAACTTAT-TACACTGCATAACTGC---GACA---CTG--ATGAAATAAACATAGT
gi|98647 : CAACTTTAAAGTATCTTTATGAACAGAGAACAACAGAACTTAT-TACACTGCACAACTGC---GACA---CTG--ATGAAATAAACATAGT
gi|98648 : CAACCTAAAAGTATCTTTATTAACAGAGAACAACAGAACTTAT-AACATTGCATAACTGC---GATA---GTG--ATGAAACAAACATAGT
gi|98649 : CAACTTAAAAGTATCTTTATTAACAGAGAACAACAGAACTTAT-TACACTGCCTATCTGC---CAGT---GTG--ATGAAATAAACATAGT
gi|98650 : CAACGTAAAAGTATCTTTATTAACACAGAACAACAGAACTTAT-TACACTGCATAACTGC---GAGA---GTG--ATGAAATATATAT
gi|98651 : CAACTTAAAAGTATTTTTATAAACAGAGAACAAAAGAACTTAA-TACATTGCATAACTGT-----GA---GTG--ACGAAATAAACATAGT
gi|98652 : CAACTTAGAAATATCTTTATTAATAGAGAACAACAGAACCTAA-TACAATGCATAACTGC---GAGA---GTG--ATGAAATAAATATAGT
gi|98653 : CAATTTAAAATCATCT-------CAGAGAACAACAGAACTTAT-TACACTGCATAACTGC---GAGA---CTG--GTGAAATAAACATAGT
gi|98654 : CAATTTAAAATCATCT-------CAGAGAACAACAGAACTTAT-TACACTGCATAACTGC---GAGA---CTG--GTGAAATAAACATAGT
gi|98655 : CAACTTAAAAGTATCTTAAGTAACAGAGAACAACAGGACGTAT-TACACTACATAACTGC---AACA---GTG--ATGAAATTAACATAGT
gi|98656 : CAACTTAAAAATATCTTTATTAACAGA--ACAACAGAATTTAT-TAAATTGCATAACTGC---GAGA---GTG--ATAAAA-AAACATAGT
gi|98657 : CAACCTAAAAGTATCTTTATGAACAGAGAACAA-AGA--------ACACTGCATAACTGC---GAGAAATGTGTTGTGAAATAAACATAGT
gi|98658 : CAACTTAAAAGTATCTTTATTAACAGGGAACAACAGAAGT---------TGCATAACTGC---TAGA---GTA--ATAATATAAACATAGT
gi|98659 : AACTTAAAAGTCTCTTTATTAACAGAGAACAAC--AACTTAC-TACACTGCATAACTGC-----GA---GTG--TTGAAATAATCATAAT
gi|98660 : AACTTTAAAGTATCTTTATTAACAGAGAA--------CTTAT-TACACTGCAATACTGT---GAGA---ATG--ATGAAATAAACATAAT
gi|98661 : TATATTTATTA-CAGAGAACAACAAGACTTAT-TACACTGCATAACTGCTGTGAGG---GTG--ATGCAATAAACATAGT
gi|98662 : AACAGAGAACAACAGAACTTAT-TACACTGCATAGC--------------TG--ATAAAATAAACATAGT
gi|98663 : GATAACAGTAGAACTTTTCTATACTGCACAACAGC---AAGA---GTG--ATGAAATAAACATAGT
gi|98664 : CGATAGA-CTTAT-TACACTGCATAACTGC---GAAA---GCG--ATAAAATAAACACAGT
gi|98665 : GAACTTAT-TACACTGCATAACTGC---AAAA---GTG--ATGAAATAAACAT
blockSeqs : C TGTG AAT TT
blockSeqs : . G . .
blockSeqs : . G . .
blockSeqs : . C . .
blockSeqs : . G . .
blockSeqs : . G . .
blockSeqs : . G . .
blockSeqs : . G . .
blockSeqs : . A . .
blockSeqs : . G . .
blockSeqs : . G . .
blockSeqs : . T . .
blockSeqs : . G . .
blockSeqs : . A . .
blockSeqs : . G . .
blockSeqs : . A . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqCons :
originalCons : CAACTTAAAAGTATCTTTATTAACAGAGAACAACAGAACTTAT-TACACTGCATAACTGC---GAGA---GTG--ATGAAATAAACATAGT
finalCons : CAACTTAAAAGTATCTTTATTAACAGAGAACAACAGAACTTAT-TACACTGCATAACTGC---GAGA---GTG--ATGAAATAAACATAGT
Alignments
lowQualScore : 0 2 4444 333 22
lowQualScore : . . .... ... ..
lowQualScore : 1 0 6666 555 88
consensus : CAACTTAAAAGTATCTTTATTAACAGAGAACAACAGAACTTAT-TACACTGCATAACTGC---GAGA---GTG--ATGAAATAAACATAGT
Reference ( family-818 ) : CAACTTAAAAGTATCTTTATTAACAGAGAACAACAGAACTTAT-TACACTGCATAACTGC---GAGA---GTG--ATGAAATAAACATAGT
gi|98646 : CAACTTTAAAGTATCTTTATGAACAGAGAACAACAGAACTTAT-TACACTGCATAACTGC---GACA---CTG--ATGAAATAAACATAGT
gi|98647 : CAACTTTAAAGTATCTTTATGAACAGAGAACAACAGAACTTAT-TACACTGCACAACTGC---GACA---CTG--ATGAAATAAACATAGT
gi|98648 : CAACCTAAAAGTATCTTTATTAACAGAGAACAACAGAACTTAT-AACATTGCATAACTGC---GATA---GTG--ATGAAACAAACATAGT
gi|98649 : CAACTTAAAAGTATCTTTATTAACAGAGAACAACAGAACTTAT-TACACTGCCTATCTGC---CAGT---GTG--ATGAAATAAACATAGT
gi|98650 : CAACGTAAAAGTATCTTTATTAACACAGAACAACAGAACTTAT-TACACTGCATAACTGC---GAGA---GTG--ATGAAATATATAT
gi|98651 : CAACTTAAAAGTATTTTTATAAACAGAGAACAAAAGAACTTAA-TACATTGCATAACTGT-----GA---GTG--ACGAAATAAACATAGT
gi|98652 : CAACTTAGAAATATCTTTATTAATAGAGAACAACAGAACCTAA-TACAATGCATAACTGC---GAGA---GTG--ATGAAATAAATATAGT
gi|98653 : CAATTTAAAATCATCT-------CAGAGAACAACAGAACTTAT-TACACTGCATAACTGC---GAGA---CTG--GTGAAATAAACATAGT
gi|98654 : CAATTTAAAATCATCT-------CAGAGAACAACAGAACTTAT-TACACTGCATAACTGC---GAGA---CTG--GTGAAATAAACATAGT
gi|98655 : CAACTTAAAAGTATCTTAAGTAACAGAGAACAACAGGACGTAT-TACACTACATAACTGC---AACA---GTG--ATGAAATTAACATAGT
gi|98656 : CAACTTAAAAATATCTTTATTAACAGA--ACAACAGAATTTAT-TAAATTGCATAACTGC---GAGA---GTG--ATAAAA-AAACATAGT
gi|98657 : CAACCTAAAAGTATCTTTATGAACAGAGAACAA-AGA--------ACACTGCATAACTGC---GAGAAATGTGTTGTGAAATAAACATAGT
gi|98658 : CAACTTAAAAGTATCTTTATTAACAGGGAACAACAGAAGT---------TGCATAACTGC---TAGA---GTA--ATAATATAAACATAGT
gi|98659 : AACTTAAAAGTCTCTTTATTAACAGAGAACAAC--AACTTAC-TACACTGCATAACTGC-----GA---GTG--TTGAAATAATCATAAT
gi|98660 : AACTTTAAAGTATCTTTATTAACAGAGAA--------CTTAT-TACACTGCAATACTGT---GAGA---ATG--ATGAAATAAACATAAT
gi|98661 : TATATTTATTA-CAGAGAACAACAAGACTTAT-TACACTGCATAACTGCTGTGAGG---GTG--ATGCAATAAACATAGT
gi|98662 : AACAGAGAACAACAGAACTTAT-TACACTGCATAGC--------------TG--ATAAAATAAACATAGT
gi|98663 : GATAACAGTAGAACTTTTCTATACTGCACAACAGC---AAGA---GTG--ATGAAATAAACATAGT
gi|98664 : CGATAGA-CTTAT-TACACTGCATAACTGC---GAAA---GCG--ATAAAATAAACACAGT
gi|98665 : GAACTTAT-TACACTGCATAACTGC---AAAA---GTG--ATGAAATAAACAT