lowQualScore : 444 1 11 1 111111111111 111 1111111111 11111111
lowQualScore : 3 444 33 7777 33 33 4 1 999 2 99 33 3 33 555 4 66 33 5 2 2 222222222222 88 2 2 222 0 9 555 33 3333333333 44444444 33 2 2 7
lowQualScore : . ... .. .... .. .. . . ... . .. .. . .. ... . .. .. . . . ............ .. . . ... . . ... .. .......... ........ .. . . .
lowQualScore : 4 777 77 4444 22 22 1 6 000 1 00 22 7 22 888 2 99 22 1 4 4 111111111111 44 5 9 222 1 0 000 99 4444444444 11111111 99 9 9 0
consensus : TTTTCATTATCAAAATTGTTTTTAA---AAAA--TCTAAATCCA----TA--GTTC--GACCCGTTTTTG--AAGCTTNAACTTGTAGACGATGTCTCAT-A--AACATC--GGGAGTACGGTTTCTT--TGAAAAT-CGTT--TTCTTCTGTTCA-GA-CGTG------------AGGCGA--TTTTGAC-ATTTAGAG-CTCTACCT-C-GCCTTCCAAATCGGCCTCTATCGTT---GTTTTAA--TC-------CCGAATTC-------AA--C-CC-TTATACTTACTTGTATGTTTA
Reference ( gi|31526 ) : TTTTCATTATCAAAATTGTTTTTAA---AAAA--TCTAAATCCA----TA--GTTC--GGCCCGTTTTTTTTAAGCTTAAACTTGTAGACGATGTCTCAC-A--AACAAC--GGGAGTACGGTTTCTT--TGAAAAA-CGTT--TTCTTCAGTTCA-GA-TGTG------------AGGCGA--TTTTGAC-ATTTAGAG-CTCTACCT-T-GCCTTCCAAATCGGCCTCTATCATT---GTTTTAA--TC-------TCTAATTC-------GA--C-CC-TTATACTTACATGTATGTTTA
gi|31522 : TTTTCATTATCAAAATTGTTTTTAA---AAAA--TCTAAATCCA----TA--GTTC--GACCCGTTTTTG--AAGCCTAAACTTATAGACGATGTCTCAT-A--AACATC--GAGAGTATGGTTTCCT--AGAAAAT-CGTT--TTCTTCAGTTCA-GA-CGTG------------AGACGA--TTTTGAT-ATTTAGAG-CTCTACCT-C-GCCGTCTAAATCGACCTCTATCGTT---GTTTTAA--TA-------TTGAATTC-------AA--CTCT-TTTTACTTACATGTATGTTTA
gi|31520 : tTTTTCATCATCAAAATTGTATTTAA---AAAA--TCTAAATCCA----TA--GTTT--GACCCATTTTTG--AAACTTAAACTTGTAGACGATGACTCAT-A--AACATC--AGGAGTACGGTTTCTT--AGAAAA--C-TT--TTCTTCTGTACA-AA-CATG------------AGACGA--TTTTGGC-ATTTAGAG-CTCTACCT-C-GCCTTCTAAATCGGTCTTTATCGTT---GTTTTAA--TC-------CCGAATTC-------AA--C-CC-TTATACTTACATGTATGTTTA
gi|31519 : tTTTTCAATATCAAAATTGTTTTTAA---AAAA--TCTAAATTCA----TT--GTTC--GATCCGTTTTTA--AAGCTTAAACTTGTAGATGATGTCTCAT-A--AACATC--GGGAGTACCGTTTATT--TGGAAAT-CGTT--TTCTTCTGTTCG-GA-CGTG------------AGAAGA--GTTTGAC-ATTTAGAG-CTCTGCCT-C-GCCTTCCAAATAGGCCTCTATCGTT---GTTTTAA--TC-------CCGAATTC-------AA--C-CC-TTATACTTACTTATATATT
gi|31518 : tTTTTCATTATCAAAATTGTTTTTAA---AAAA--TATAAGTCAA----TA--GTTC--GAACCATTTTTG--AGGTTTAAAATTGTAGACGAAGTCTTAT-T--AACATC--TGGAGTACGGTTTCTT--AGAAAAT-CATT--TTCTTCTGTACA-GA-CGTG------------AGGCGA--TTTTGAC-ATTTAGAG-CTCTACCC-C-GCCTTCCAGATCGGTCTCTATCGTT---G-TTTAA--TC-------CCGAATTC-------AA--C-CC-TTATATTTACATGTATGTTTA
gi|31516 : tTTTTCATTATCAAAAGTGTTTTAAA---AAAT--TCTAAATCCA----TA--GTTC--GACC--TTTGTTTGAAGCTTTAACTTGTAGGTGATGTCTCAA-A--AACATC--GGGAGTACAGTTTCAT--TAAAACT-CGTT--TTCTTCTGTTTA-GA-TGTG------------ATGCGA--TTTTGAC-GTTTAGAT-CTCTACCT-C-GCCTTCCAGATAGGCCTCTGTCGTT---GTTTTAT--TC-------CCTAATTC-------AA--C-CC-TAATACTTACTTGTATGTTTA
gi|31517 : tTTTTCATTATCAAAAGTGTTTTAAA---AAAT--TCTAAATCCA----TA--GTTC--GACC--TTTGTTTGAAGCTTTAACTTGTAGGTGATGTCTCTA-A--AACATC--GGGAGTACAGTTTCAT--TAAAACT-CGTT--TTCTTCTGTTTA-GA-TGTG------------ATGCGA--TTTTGAC-GTTTAGAT-CTCTACCT-C-GCCTTCCAAATAGGCCTCTGTCGTT---GTTTTAT--TC-------CCTAATTC-------AA--C-CC-TAATACTTACTTGTATGTTTAaa
gi|31521 : tTTTTCATTATCAAAATTGTTTTTAAGAAAAAA--TCTAAATCCAAAGTTAAAGTTC--GACCCGTTTTTG--AAACTTGAACTTGTAGACAAAGTCTCAT-A--AACATC--GGGAGTACTGTTTCTT--GGAAAAC-AGTT--TTTT---GTACA-GA-CGTG------------AGGCTA--TTTTGAC-ATTTAGAT-CTCTACCT-C-GCCTTTCAAATCGGCCTCTATCGTT---GTTTTAA--TC-------CCGAATTC-------AA--T-CC-TAATATTTACTTGTATGTTTAaa
gi|31523 : tTTTTCATCATCAAAATTGTTTTTAA---AAAC--TCTAAATCCA----TA--GTTT--GATTTGTTTTTG--AAACTTAAACTTGTAATTGATGTCCTAT-A--ACCATT--AAGAGCAGGGTTTCTT--TGTAAAT-TGTT--TTCTTCTGTTCA-GA-CCTG------------AGGTGA--TTTTGAC-ATTTAGAG-CTCTACCT-C-GCCTTCCGAATCGGCTTCTACCTTT---GTTTTAA--TC-------CTGAATTC-------AA--C-CC-TTATACT
gi|31524 : tTTTTTAT-ATCAAAATTGTTTTAAA---AAAACCTCTAAATCCA----TA--GTTA--GACCCG--TTTTTGAAGCTTAAACTTGTAGACAAAGTTTTATAA--AACATC--CGGAATACGGTTTCTT----AAAAATCGTTTATTCTT---TTCA-GA-CGTGACAGAAGATGTTAGGCGA--TTTTGAT-ATTTAGAG-CTCTACCT-C-GCCTTCTAAATCGGGCTATATCGTT---GTTTTAA--TC-------CCGAATTC-------AATTT-CA-TTAT--TTACTTGTATGTTTA
gi|31525 : tTTTTCATTTTCAATTTTTTTTTAAA---AAAA--TCGTAATCCA----TA--GTTC--AACCCGTTTTTG--AAGCTTAAACCTGTAGACGATGTCTCGT-A--ATCATC--GGGAGTATGGTTTCTT--TG--AGA-CG----------AGT---------------------------------TTGAT-ATTTAGAG-CTCTATCT-C-GCCTTCTAAATCGGCCTCTGTCGTT----TTTTAA--TC-------ACGAATTC-------AA--C-CC-TTCTACTTAAATGTATGTTTA
gi|31527 : tTTTCGTTATCAACATTGGTTTTTA---AAAA--TCTAAATTCA----TA--GTTCCGGGCCAG--ATTTTGAAGCCTAAACTTGAACACGATATCTCAT-ATCGTCAA----GGA-TATGGTTTCTT--CGAAAAG-CGTT--TTCTTCTGTTAT-GA-TTTG------------AGGCGA--TTTTGACAATATAGCGCCTCT-CTT-C-GCCTTTCAAAT--ATTTAAATATTT---ATTTT----TC-------TTTAAATCCAGGAATGA--A-CC-AT-TGCTTACTTGAATGTTTA
gi|31528 : TCAGTATCAAG--TGTTTTTAA---ATTA--TCTAAATTTGG---TA--GTAC--GACCCGTATTTG--AATTTTTCACTTGTGGATGGTGCCTCAT-A----CAACTCAGCGGTACGGT--CTT--CGGAAAT-CGTT--TTCTTCTGCTTA-AA-TGCG------------AGGCGA--TTTTGAC-A
gi|31530 : TCATTATCAAG--TGTTTTTAA---ATTA--TCTAAATTGG----TA--GTTC--GACCCGTATTTggatttcccattgtttaaatcccgaattgaatctttaaacttacttttatg
gi|31529 : TCATTATCAAG--TGTTTTTAA---ATTA--TCTAAATTGG----TA--GTTC--GACCCGTATTTgaatttttcacttgt
gi|31531 : ---AAAA--TCTAAATTGA----GA--GT-C--GACCAAATTG----AAGCCTTAACATGTAGACGATGTCACAT-A--AAC---------GT-CGGCTCCAG--TGTGACT-CATT--TTCTTCTGTTCA-GA-CGTG------------AGgaatttttcacttgt
gi|31532 : AATTCC----TA--GTTC--GGTCTGTTTTCG--AGGCCTCGAATTGTAAACGATGTCTCAT-A--AAAATC--GGCTATAC-GTTTCCT--TGGAAAT-TATT--TTCTCC--TTTGTGACTGTG------------AATCTAT-TTTTGAC-Accaacaatgctttacttcacct
gi|31533 : ----TA--ATTT--GACCTGTTTTG---GGGCCTCAACTTTTAGAAGATGTCTCGA-A--AACACT--GGTGGTACGTTTTTTTTCTG-AAGT-CGTT--TTCTTCTGATTA-AC-TGTG------------AGGAGA--TTTT-AT-CTTCAGAT-CTCTATATATAGATTTCAAAGTCGGTATTTAACTTTAACGTTTAAAATTCAAAAACGTTTAATTC-------AA--C-CA-TTATTCTTACTTATAAGTTTA
gi|31534 : AGACGATGTCTCCT-A--AACATC--AGCAATACGGTTTCTT--CGGGAAT-CGTT--TTCTTCTGTTTA-AA-TATG------------AGGCGATTTTTTACC-A--CAGAG-CCCTACTT-A-GTCTTCGGAATTAGTCTCTACCGTT---GTCTGAA--TC-------TCGAATTG-------AA--C-AA-TTATACTTAGTTTTATGTTTAga
gi|31535 : GATATCCCAC-A--AGCATC--GGCAGTTCGGTTTCTT--TTGAAAT-CGTT--TTATGTTGTTCA-AT-TGTG------------AGACGAC-TTTTGAC------------CTACTT-A-GCCTTACATA-CGGCATTTAC--TT---G-TTTAA--TC-------TCGAATTG-------AA--C-TTGTTAAATTTACATGTATGTTCA
Alignments
lowQualScore : 111111111111
lowQualScore : 2 444 33 6666 33 33 33 1 2 2 33 3 2 111111111111 4 2 5555 2 33 5555 444 22 66666 444 33 2 2 1
lowQualScore : . ... .. .... .. .. .. . . . .. . . ............ . . .... . .. .... ... .. ..... ... .. . . .
lowQualScore : 5 444 44 9999 11 11 11 0 2 2 11 5 2 444444444444 4 2 3333 5 44 7777 444 99 22222 444 44 5 5 4
consensus : TTTTCATTATCAAAATTGTTTTTAA---AAAA--TCTAAATCCA----TA--GTTC--GACCCGTTTTTG--AAGCTTNAACTTGTAGACGATGTCTCAT-A-AACATCGGGAGTACGGTTTCTT--TGAAAATCGTTTTCTTCTGTTCAGAC-GTG------------AGGCGA-TTTTGAC-ATT----TAGAG-CTC--TACCTCGCCTTCCAAA----TCGGCCTCTATCGTT---GTTT-TAATCC-----CG---AATTCAA--C-CC-TTATACTTACTTGTATGTTTA
Reference ( family-817 ) : TTTTCATTATCAAAATTGTTTTTAA---AAAA--TCTAAATCCA----TA--GTTC--GACCCGTTTTTG--AAGCTTNAACTTGTAGACGATGTCTCAT-A-AACATCGGGAGTACGGTTTCTT--TGAAAATCGTTTTCTTCTGTTCAGAC-GTG------------AGGCGA-TTTTGAC-ATT----TAGAG-CTC--TACCTCGCCTTCCAAA----TCGGCCTCTATCGTT---GTTT-TAATCC-----CG---AATTCAA--C-CC-TTATACTTACTTGTATGTTTA
gi|31516 : TTTTCATTATCAAAAGTGTTTTAAA---AAAT--TCTAAATCCA----TA--GTTC--GACCTTTGTTTG--AAGCTTTAACTTGTAGGTGATGTCTCAA-A-AACATCGGGAGTACAGTTTCAT--TAAAACTCGTTTTCTTCTGTTTAGAT-GTG------------ATGCGA-TTTTGAC-GTT----TAGAT-CTC--TACCTCGCCTTCCAGA----TAGGCCTCTGTCGTT---GTTT-TATTCC-----CT---AATTCAA--C-CC-TAATACTTACTTGTATGTTTA
gi|31517 : tTTTTCATTATCAAAAGTGTTTTAAA---AAAT--TCTAAATCCA----TA--GTTC--GACCTTTGTTTG--AAGCTTTAACTTGTAGGTGATGTCTCTA-A-AACATCGGGAGTACAGTTTCAT--TAAAACTCGTTTTCTTCTGTTTAGAT-GTG------------ATGCGA-TTTTGAC-GTT----TAGAT-CTC--TACCTCGCCTTCCAAA----TAGGCCTCTGTCGTT---GTTT-TATTCC-----CT---AATTCAA--C-CC-TAATACTTACTTGTATGTTTAaa
gi|31518 : tTTTTCATTATCAAAATTGTTTTTAA---AAAA--TATAAGTCAA----TA--GTTC--GAACCATTTTTG--AGGTTTAAAATTGTAGACGAAGTCTTAT-T-AACATCTGGAGTACGGTTTCTT--AGAAAATCATTTTCTTCTGTACAGAC-GTG------------AGGCGA-TTTTGAC-ATT----TAGAG-CTC--TACCCCGCCTTCCAGA----TCGGTCTCTATCGTT---G-TT-TAATCC-----CG---AATTCAA--C-CC-TTATATTTACATGTATGTTTAaa
gi|31519 : tTTTTCAATATCAAAATTGTTTTTAA---AAAA--TCTAAATTCA----TT--GTTC--GATCCGTTTTTA--AAGCTTAAACTTGTAGATGATGTCTCAT-A-AACATCGGGAGTACCGTTTATT--TGGAAATCGTTTTCTTCTGTTCGGAC-GTG------------AGAAGA-GTTTGAC-ATT----TAGAG-CTC--TGCCTCGCCTTCCAAA----TAGGCCTCTATCGTT---GTTT-TAATCC-----CG---AATTCAA--C-CC-TTATACTTACTTATATATT
gi|31520 : tTTTTCATCATCAAAATTGTATTTAA---AAAA--TCTAAATCCA----TA--GTTT--GACCCATTTTTG--AAACTTAAACTTGTAGACGATGACTCAT-A-AACATCAGGAGTACGGTTTCTT--AGAAAAC--TTTTCTTCTGTACAAAC-ATG------------AGACGA-TTTTGGC-ATT----TAGAG-CTC--TACCTCGCCTTCTAAA----TCGGTCTTTATCGTT---GTTT-TAATCC-----CG---AATTCAA--C-CC-TTATACTTACATGTATGTTTA
gi|31521 : tTTTTCATTATCAAAATTGTTTTTAAGAAAAAA--TCTAAATCCAAAGTTAAAGTTC--GACCCGTTTTTG--AAACTTGAACTTGTAGACAAAGTCTCAT-A-AACATCGGGAGTACTGTTTCTT--GGAAAACAGTTTTTT---GTACAGAC-GTG------------AGGCTA-TTTTGAC-ATT----TAGAT-CTC--TACCTCGCCTTTCAAA----TCGGCCTCTATCGTT---GTTT-TAATCC-----CG---AATTCAA--T-CC-TAATATTTACTTGTATGTTTA
gi|31522 : tTTTTCATTATCAAAATTGTTTTTAA---AAAA--TCTAAATCCA----TA--GTTC--GACCCGTTTTTG--AAGCCTAAACTTATAGACGATGTCTCAT-A-AACATCGAGAGTATGGTTTCCT--AGAAAATCGTTTTCTTCAGTTCAGAC-GTG------------AGACGA-TTTTGAT-ATT----TAGAG-CTC--TACCTCGCCGTCTAAA----TCGACCTCTATCGTT---GTTT-TAATAT-----TG---AATTCAA--CTCT-TTTTACTTACATGTATGTTTA
gi|31523 : tTTTTCATCATCAAAATTGTTTTTAA---AAAC--TCTAAATCCA----TA--GTTT--GATTTGTTTTTG--AAACTTAAACTTGTAATTGATGTCCTAT-A-ACCATTAAGAGCAGGGTTTCTT--TGTAAATTGTTTTCTTCTGTTCAGAC-CTG------------AGGTGA-TTTTGAC-ATT----TAGAG-CTC--TACCTCGCCTTCCGAA----TCGGCTTCTACCTTT---GTTT-TAATCC-----TG---AATTCAA--C-CC-TTATACT
gi|31524 : tTTTTTAT-ATCAAAATTGTTTTAAA---AAAACCTCTAAATCCA----TA--GTTA--GACCCGTTTTTG--AAGCTTAAACTTGTAGACAAAGTTTTATAA-AACATCCGGAATACGGTTTC-T--TAAAAATCG-TTTATTCTTTTCAGAC-GTGACAGAAGATGTTAGGCGA-TTTTGAT-ATT----TAGAG-CTC--TACCTCGCCTTCTAAA----TCGGGCTATATCGTT---GTTT-TAATCC-----CG---AATTCAATTT-CA-TTAT--TTACTTGTATGTTTA
gi|31525 : tTTTTCATTTTCAATTTTTTTTTAAA---AAAA--TCGTAATCCA----TA--GTTC--AACCCGTTTTTG--AAGCTTAAACCTGTAGACGATGTCTCGT-A-ATCATCGGGAGTATGGTTTCTT--TG--------------------AGAC---G------------AG------TTTGAT-ATT----TAGAG-CTC--TATCTCGCCTTCTAAA----TCGGCCTCTGTCGTT----TTT-TAATCA-----CG---AATTCAA--C-CC-TTCTACTTAAATGTATGTTTA
gi|31526 : tTTTTCATTATCAAAATTGTTTTTAA---AAAA--TCTAAATCCA----TA--GTTC--GGCCCGTTTTTTTTAAGCTTAAACTTGTAGACGATGTCTCAC-A-AACAACGGGAGTACGGTTTCTT--TGAAAAACGTTTTCTTCAGTTCAGAT-GTG------------AGGCGA-TTTTGAC-ATT----TAGAG-CTC--TACCTTGCCTTCCAAA----TCGGCCTCTATCATT---GTTT-TAATCT-----CT---AATTCGA--C-CC-TTATACTTACATGTATGTTTA
gi|31527 : TTTCGTTATCAACATTGGTTTTTA---AAAA--TCTAAATTCA----TA--GTTCCGGGCCAGATTTTG--AAGCCTAAACTTGAACACGATATCTCAT-A-T-CGTCAAGGATATGGTTTCTT--CGAAAAGCGTTTTCTTCTGTTATGAT-TTG------------AGGCGA-TTTTGACAATA----TAGCGCCTC--T-CTTCGCCTTTCAAATATTTAAATATTTATTTTT---CTTT-AAATCC-----AG---GAATGAA--C-CA-T--TGCTTACTTGAATGTTTA
gi|31528 : TCAGTATCAAG--TGTTTTTAA---ATTA--TCTAAATTTGG---TA--GTAC--GACCCGTATTTG--AATTTTTCACTTGTGGATGGTGCCTCAT-ACAAC-TCAGCGGTACGGT--CTT--CGGAAATCGTTTTCTTCTGCTTAAAT-GCG------------AGGCGA-TTTTGAC-A
gi|31528 : CATT---GTTT-AAATCC-----CG---AATTGAA--T-CT-TTAAACTTACTTTTATGggatttcccattgtttaaatcccgaattgaatctttaaacttacttttatg
gi|31529 : tcagtatcaagtgtttttaaattatctaaatttggtagtacgacccgtatttgaatttttcacttgtggatggtgcctcatacaactcagcggtacggtcttcggaaatcgttttcttctgcttaaatgcgaggcgattttgacaggatttccTCATTATCAAG--TGTTTTTAA---ATTA--TCTAAATTGG----TA--GTTC--GACCCGTATTTG--AATTTTTCACTTGT
gi|31530 : TCATTATCAAG--TGTTTTTAA---ATTA--TCTAAATTGG----TA--GTTC--GACCCGTATTTG--AATTTTTCACTTGT
gi|31531 : ---AAAA--TCTAAATTGA----GA--GT-C--GACCAAATT--G--AAGCCTTAACATGTAGACGATGTCACAT-A-AACGTCGG--------CTCCAG--TGTGACTCATTTTCTTCTGTTCAGAC-GTG------------AGCC-------AAC-AAT--------G-CTT--TACTTCACCT
gi|31532 : AATTCC----TA--GTTC--GGTCTGTTTTCG--AGGCCTCGAATTGTAAACGATGTCTCAT-A-AAAATCGGCTATAC-GTTTCCT--TGGAAATTATTTTCTCCT-TTGTGACTGTG------------AATCTATTTTTGAC-A
gi|31533 : ----TA--ATTT--GACCTGTTTT-G--GGGCCTCAACTTTTAGAAGATGTCTCGA-A-AACACTGGTGGTACGTTTTTTTTCTG-AAGTCGTTTTCTTCTGATTAACT-GTG------------AGGAGA-TTTT-AT-CTT----CAGAT-CTCTATATATAGATTTCAAAG----TCGGTATTTAACTTTAACGTTTAAAATTCAAAAACGTTTAATTCAA--C-CA-TTATTCTTACTTATAAGTTTA
gi|31534 : AGACGATGTCTCCT-A-AACATCAGCAATACGGTTTCTT--CGGGAATCGTTTTCTTCTGTTTAAAT-ATG------------AGGCGA-TTTT-----TTACCACAGAG-CCC--TACTTAGTCTTCGGAA----TTAGTCTCTACCGTT---GTCT-GAATCT-----CG---AATTGAA--C-AA-TTATACTTAGTTTTATGTTTAga
gi|31535 : GATATCCCAC-A-AGCATCGGCAGTTCGGTTTCTT--TTGAAATCGTTTTATGTTGTTCAATT-GTG------------AGACGACTTTTGAC----------------C--TACTTAGCCTTACATA-----CGGCATTTAC--TT---GTTT--AATCT-----CG---AATTGAA--C-TTGTTAAATTTACATGTATGTTCA
Alignments
lowQualScore : 111111111111
lowQualScore : 2 444 33 6666 33 33 33 1 2 2 33 3 2 111111111111 4 2 5555 2 33 5555 444 22 66666 444 33 2 2 1
lowQualScore : . ... .. .... .. .. .. . . . .. . . ............ . . .... . .. .... ... .. ..... ... .. . . .
lowQualScore : 5 444 44 9999 11 11 11 0 2 2 11 5 2 444444444444 4 2 3333 5 44 7777 444 99 22222 444 44 5 5 4
consensus : TTTTCATTATCAAAATTGTTTTTAA---AAAA--TCTAAATCCA----TA--GTTC--GACCCGTTTTTG--AAGCTTNAACTTGTAGACGATGTCTCAT-A-AACATCGGGAGTACGGTTTCTT--TGAAAATCGTTTTCTTCTGTTCAGAC-GTG------------AGGCGA-TTTTGAC-ATT----TAGAG-CTC--TACCTCGCCTTCCAAA----TCGGCCTCTATCGTT---GTTT-TAATCC-----CG---AATTCAA--C-CC-TTATACTTACTTGTATGTTTA
Reference ( family-817 ) : TTTTCATTATCAAAATTGTTTTTAA---AAAA--TCTAAATCCA----TA--GTTC--GACCCGTTTTTG--AAGCTTNAACTTGTAGACGATGTCTCAT-A-AACATCGGGAGTACGGTTTCTT--TGAAAATCGTTTTCTTCTGTTCAGAC-GTG------------AGGCGA-TTTTGAC-ATT----TAGAG-CTC--TACCTCGCCTTCCAAA----TCGGCCTCTATCGTT---GTTT-TAATCC-----CG---AATTCAA--C-CC-TTATACTTACTTGTATGTTTA
gi|31516 : TTTTCATTATCAAAAGTGTTTTAAA---AAAT--TCTAAATCCA----TA--GTTC--GACCTTTGTTTG--AAGCTTTAACTTGTAGGTGATGTCTCAA-A-AACATCGGGAGTACAGTTTCAT--TAAAACTCGTTTTCTTCTGTTTAGAT-GTG------------ATGCGA-TTTTGAC-GTT----TAGAT-CTC--TACCTCGCCTTCCAGA----TAGGCCTCTGTCGTT---GTTT-TATTCC-----CT---AATTCAA--C-CC-TAATACTTACTTGTATGTTTA
gi|31517 : tTTTTCATTATCAAAAGTGTTTTAAA---AAAT--TCTAAATCCA----TA--GTTC--GACCTTTGTTTG--AAGCTTTAACTTGTAGGTGATGTCTCTA-A-AACATCGGGAGTACAGTTTCAT--TAAAACTCGTTTTCTTCTGTTTAGAT-GTG------------ATGCGA-TTTTGAC-GTT----TAGAT-CTC--TACCTCGCCTTCCAAA----TAGGCCTCTGTCGTT---GTTT-TATTCC-----CT---AATTCAA--C-CC-TAATACTTACTTGTATGTTTAaa
gi|31518 : tTTTTCATTATCAAAATTGTTTTTAA---AAAA--TATAAGTCAA----TA--GTTC--GAACCATTTTTG--AGGTTTAAAATTGTAGACGAAGTCTTAT-T-AACATCTGGAGTACGGTTTCTT--AGAAAATCATTTTCTTCTGTACAGAC-GTG------------AGGCGA-TTTTGAC-ATT----TAGAG-CTC--TACCCCGCCTTCCAGA----TCGGTCTCTATCGTT---G-TT-TAATCC-----CG---AATTCAA--C-CC-TTATATTTACATGTATGTTTAaa
gi|31519 : tTTTTCAATATCAAAATTGTTTTTAA---AAAA--TCTAAATTCA----TT--GTTC--GATCCGTTTTTA--AAGCTTAAACTTGTAGATGATGTCTCAT-A-AACATCGGGAGTACCGTTTATT--TGGAAATCGTTTTCTTCTGTTCGGAC-GTG------------AGAAGA-GTTTGAC-ATT----TAGAG-CTC--TGCCTCGCCTTCCAAA----TAGGCCTCTATCGTT---GTTT-TAATCC-----CG---AATTCAA--C-CC-TTATACTTACTTATATATT
gi|31520 : tTTTTCATCATCAAAATTGTATTTAA---AAAA--TCTAAATCCA----TA--GTTT--GACCCATTTTTG--AAACTTAAACTTGTAGACGATGACTCAT-A-AACATCAGGAGTACGGTTTCTT--AGAAAAC--TTTTCTTCTGTACAAAC-ATG------------AGACGA-TTTTGGC-ATT----TAGAG-CTC--TACCTCGCCTTCTAAA----TCGGTCTTTATCGTT---GTTT-TAATCC-----CG---AATTCAA--C-CC-TTATACTTACATGTATGTTTA
gi|31521 : tTTTTCATTATCAAAATTGTTTTTAAGAAAAAA--TCTAAATCCAAAGTTAAAGTTC--GACCCGTTTTTG--AAACTTGAACTTGTAGACAAAGTCTCAT-A-AACATCGGGAGTACTGTTTCTT--GGAAAACAGTTTTTT---GTACAGAC-GTG------------AGGCTA-TTTTGAC-ATT----TAGAT-CTC--TACCTCGCCTTTCAAA----TCGGCCTCTATCGTT---GTTT-TAATCC-----CG---AATTCAA--T-CC-TAATATTTACTTGTATGTTTA
gi|31522 : tTTTTCATTATCAAAATTGTTTTTAA---AAAA--TCTAAATCCA----TA--GTTC--GACCCGTTTTTG--AAGCCTAAACTTATAGACGATGTCTCAT-A-AACATCGAGAGTATGGTTTCCT--AGAAAATCGTTTTCTTCAGTTCAGAC-GTG------------AGACGA-TTTTGAT-ATT----TAGAG-CTC--TACCTCGCCGTCTAAA----TCGACCTCTATCGTT---GTTT-TAATAT-----TG---AATTCAA--CTCT-TTTTACTTACATGTATGTTTA
gi|31523 : tTTTTCATCATCAAAATTGTTTTTAA---AAAC--TCTAAATCCA----TA--GTTT--GATTTGTTTTTG--AAACTTAAACTTGTAATTGATGTCCTAT-A-ACCATTAAGAGCAGGGTTTCTT--TGTAAATTGTTTTCTTCTGTTCAGAC-CTG------------AGGTGA-TTTTGAC-ATT----TAGAG-CTC--TACCTCGCCTTCCGAA----TCGGCTTCTACCTTT---GTTT-TAATCC-----TG---AATTCAA--C-CC-TTATACT
gi|31524 : tTTTTTAT-ATCAAAATTGTTTTAAA---AAAACCTCTAAATCCA----TA--GTTA--GACCCGTTTTTG--AAGCTTAAACTTGTAGACAAAGTTTTATAA-AACATCCGGAATACGGTTTC-T--TAAAAATCG-TTTATTCTTTTCAGAC-GTGACAGAAGATGTTAGGCGA-TTTTGAT-ATT----TAGAG-CTC--TACCTCGCCTTCTAAA----TCGGGCTATATCGTT---GTTT-TAATCC-----CG---AATTCAATTT-CA-TTAT--TTACTTGTATGTTTA
gi|31525 : tTTTTCATTTTCAATTTTTTTTTAAA---AAAA--TCGTAATCCA----TA--GTTC--AACCCGTTTTTG--AAGCTTAAACCTGTAGACGATGTCTCGT-A-ATCATCGGGAGTATGGTTTCTT--TG--------------------AGAC---G------------AG------TTTGAT-ATT----TAGAG-CTC--TATCTCGCCTTCTAAA----TCGGCCTCTGTCGTT----TTT-TAATCA-----CG---AATTCAA--C-CC-TTCTACTTAAATGTATGTTTA
gi|31526 : tTTTTCATTATCAAAATTGTTTTTAA---AAAA--TCTAAATCCA----TA--GTTC--GGCCCGTTTTTTTTAAGCTTAAACTTGTAGACGATGTCTCAC-A-AACAACGGGAGTACGGTTTCTT--TGAAAAACGTTTTCTTCAGTTCAGAT-GTG------------AGGCGA-TTTTGAC-ATT----TAGAG-CTC--TACCTTGCCTTCCAAA----TCGGCCTCTATCATT---GTTT-TAATCT-----CT---AATTCGA--C-CC-TTATACTTACATGTATGTTTA
gi|31527 : TTTCGTTATCAACATTGGTTTTTA---AAAA--TCTAAATTCA----TA--GTTCCGGGCCAGATTTTG--AAGCCTAAACTTGAACACGATATCTCAT-A-T-CGTCAAGGATATGGTTTCTT--CGAAAAGCGTTTTCTTCTGTTATGAT-TTG------------AGGCGA-TTTTGACAATA----TAGCGCCTC--T-CTTCGCCTTTCAAATATTTAAATATTTATTTTT---CTTT-AAATCC-----AG---GAATGAA--C-CA-T--TGCTTACTTGAATGTTTA
gi|31528 : TCAGTATCAAG--TGTTTTTAA---ATTA--TCTAAATTTGG---TA--GTAC--GACCCGTATTTG--AATTTTTCACTTGTGGATGGTGCCTCAT-ACAAC-TCAGCGGTACGGT--CTT--CGGAAATCGTTTTCTTCTGCTTAAAT-GCG------------AGGCGA-TTTTGAC-A
gi|31528 : CATT---GTTT-AAATCC-----CG---AATTGAA--T-CT-TTAAACTTACTTTTATGggatttcccattgtttaaatcccgaattgaatctttaaacttacttttatg
gi|31529 : tcagtatcaagtgtttttaaattatctaaatttggtagtacgacccgtatttgaatttttcacttgtggatggtgcctcatacaactcagcggtacggtcttcggaaatcgttttcttctgcttaaatgcgaggcgattttgacaggatttccTCATTATCAAG--TGTTTTTAA---ATTA--TCTAAATTGG----TA--GTTC--GACCCGTATTTG--AATTTTTCACTTGT
gi|31530 : TCATTATCAAG--TGTTTTTAA---ATTA--TCTAAATTGG----TA--GTTC--GACCCGTATTTG--AATTTTTCACTTGT
gi|31531 : ---AAAA--TCTAAATTGA----GA--GT-C--GACCAAATT--G--AAGCCTTAACATGTAGACGATGTCACAT-A-AACGTCGG--------CTCCAG--TGTGACTCATTTTCTTCTGTTCAGAC-GTG------------AGCC-------AAC-AAT--------G-CTT--TACTTCACCT
gi|31532 : AATTCC----TA--GTTC--GGTCTGTTTTCG--AGGCCTCGAATTGTAAACGATGTCTCAT-A-AAAATCGGCTATAC-GTTTCCT--TGGAAATTATTTTCTCCT-TTGTGACTGTG------------AATCTATTTTTGAC-A
gi|31533 : ----TA--ATTT--GACCTGTTTT-G--GGGCCTCAACTTTTAGAAGATGTCTCGA-A-AACACTGGTGGTACGTTTTTTTTCTG-AAGTCGTTTTCTTCTGATTAACT-GTG------------AGGAGA-TTTT-AT-CTT----CAGAT-CTCTATATATAGATTTCAAAG----TCGGTATTTAACTTTAACGTTTAAAATTCAAAAACGTTTAATTCAA--C-CA-TTATTCTTACTTATAAGTTTA
gi|31534 : AGACGATGTCTCCT-A-AACATCAGCAATACGGTTTCTT--CGGGAATCGTTTTCTTCTGTTTAAAT-ATG------------AGGCGA-TTTT-----TTACCACAGAG-CCC--TACTTAGTCTTCGGAA----TTAGTCTCTACCGTT---GTCT-GAATCT-----CG---AATTGAA--C-AA-TTATACTTAGTTTTATGTTTAga
gi|31535 : GATATCCCAC-A-AGCATCGGCAGTTCGGTTTCTT--TTGAAATCGTTTTATGTTGTTCAATT-GTG------------AGACGACTTTTGAC----------------C--TACTTAGCCTTACATA-----CGGCATTTAC--TT---GTTT--AATCT-----CG---AATTGAA--C-TTGTTAAATTTACATGTATGTTCA
blockSeqs : A GAA CC AAGT AA CG TT T A C TC A T ACAGAAGATGTT T A ACCA C TA TATT AAC AA AAAAA TTT TT T G T
blockSeqs : A . . G . . . A . . . A . . C . . . . . . T . . . . . A
blockSeqs : A . . . . . . A . . . G . . . . . . . . . T . . . . . T
blockSeqs : A . . . . . . A . . . A . . . . . . . . . T . . . . . A
blockSeqs : A . . . . . . G . . . A . . . . . . . . . T . . . . . T
blockSeqs : A . . . . . . A . . . A . . . . . . . . . T . . . . . A
blockSeqs : A . . . . . . A . . . T . . . . . . . . . T . . . . . T
blockSeqs : A . . . . . . A . . . A . . . . . . . . . T . . . . . A
blockSeqs : T . . . . . . A . . . A . . . . . . . . . T . . . . . A
blockSeqs : A . . . . . . A . . . A . . . . . . . . . T . . . . . T
blockSeqs : A . . . . . . A . . . G . . . . . . . . . T . . . . . T
blockSeqs : . . . . . . . T . . . T . . . . . . . . . A . . . . . T
blockSeqs : . . . . . . . T . . . G . . . . . . . . . A . . . . . T
blockSeqs : . . . . . . . T . . . G . . . . . . . . . G . . . . . A
blockSeqs : . . . . . . T . . . G . . . . . . . . . . . . . .
blockSeqs : . . . . C . . . . . . . .
blockSeqs : . . . . C . . . . . . . .
blockSeqCons :
originalCons : TTTTCATTATCAAAATTGTTTTTAA---AAAA--TCTAAATCCA----TA--GTTC--GACCCGTTTTTG--AAGCTTNAACTTGTAGACGATGTCTCAT-A-AACATCGGGAGTACGGTTTCTT--TGAAAATCGTTTTCTTCTGTTCAGAC-GTG------------AGGCGA-TTTTGAC-ATT----TAGAG-CTC--TACCTCGCCTTCCAAA----TCGGCCTCTATCGTT---GTTT-TAATCC-----CG---AATTCAA--C-CC-TTATACTTACTTGTATGTTTA
finalCons : TTTTCATTATCAAAATTGTTTTTAA---AAAA--TCTAAATCCA----TA--GTTC--GACCCGTTTTTG--AAGCTTNAACTTGTAGACGATGTCTCAT-A-AACATCGGGAGTACGGTTTCTT--TGAAAATCGTTTTCTTCTGTTCAGAC-GTG------------AGGCGA-TTTTGAC-ATT----TAGAG-CTC--TACCTCGCCTTCCAAA----TCGGCCTCTATCGTT---GTTT-TAATCC-----CG---AATTCAA--C-CC-TTATACTTACTTGTATGTTTA
Alignments
lowQualScore : 111111111111
lowQualScore : 2 444 33 6666 33 33 33 1 2 2 33 3 2 111111111111 4 2 5555 2 33 5555 444 22 66666 444 33 2 2 1
lowQualScore : . ... .. .... .. .. .. . . . .. . . ............ . . .... . .. .... ... .. ..... ... .. . . .
lowQualScore : 5 444 44 9999 11 11 11 0 2 2 11 5 2 444444444444 4 2 3333 5 44 7777 444 99 22222 444 44 5 5 4
consensus : TTTTCATTATCAAAATTGTTTTTAA---AAAA--TCTAAATCCA----TA--GTTC--GACCCGTTTTTG--AAGCTTNAACTTGTAGACGATGTCTCAT-A-AACATCGGGAGTACGGTTTCTT--TGAAAATCGTTTTCTTCTGTTCAGAC-GTG------------AGGCGA-TTTTGAC-ATT----TAGAG-CTC--TACCTCGCCTTCCAAA----TCGGCCTCTATCGTT---GTTT-TAATCC-----CG---AATTCAA--C-CC-TTATACTTACTTGTATGTTTA
Reference ( family-817 ) : TTTTCATTATCAAAATTGTTTTTAA---AAAA--TCTAAATCCA----TA--GTTC--GACCCGTTTTTG--AAGCTTNAACTTGTAGACGATGTCTCAT-A-AACATCGGGAGTACGGTTTCTT--TGAAAATCGTTTTCTTCTGTTCAGAC-GTG------------AGGCGA-TTTTGAC-ATT----TAGAG-CTC--TACCTCGCCTTCCAAA----TCGGCCTCTATCGTT---GTTT-TAATCC-----CG---AATTCAA--C-CC-TTATACTTACTTGTATGTTTA
gi|31516 : TTTTCATTATCAAAAGTGTTTTAAA---AAAT--TCTAAATCCA----TA--GTTC--GACCTTTGTTTG--AAGCTTTAACTTGTAGGTGATGTCTCAA-A-AACATCGGGAGTACAGTTTCAT--TAAAACTCGTTTTCTTCTGTTTAGAT-GTG------------ATGCGA-TTTTGAC-GTT----TAGAT-CTC--TACCTCGCCTTCCAGA----TAGGCCTCTGTCGTT---GTTT-TATTCC-----CT---AATTCAA--C-CC-TAATACTTACTTGTATGTTTA
gi|31517 : tTTTTCATTATCAAAAGTGTTTTAAA---AAAT--TCTAAATCCA----TA--GTTC--GACCTTTGTTTG--AAGCTTTAACTTGTAGGTGATGTCTCTA-A-AACATCGGGAGTACAGTTTCAT--TAAAACTCGTTTTCTTCTGTTTAGAT-GTG------------ATGCGA-TTTTGAC-GTT----TAGAT-CTC--TACCTCGCCTTCCAAA----TAGGCCTCTGTCGTT---GTTT-TATTCC-----CT---AATTCAA--C-CC-TAATACTTACTTGTATGTTTAaa
gi|31518 : tTTTTCATTATCAAAATTGTTTTTAA---AAAA--TATAAGTCAA----TA--GTTC--GAACCATTTTTG--AGGTTTAAAATTGTAGACGAAGTCTTAT-T-AACATCTGGAGTACGGTTTCTT--AGAAAATCATTTTCTTCTGTACAGAC-GTG------------AGGCGA-TTTTGAC-ATT----TAGAG-CTC--TACCCCGCCTTCCAGA----TCGGTCTCTATCGTT---G-TT-TAATCC-----CG---AATTCAA--C-CC-TTATATTTACATGTATGTTTAaa
gi|31519 : tTTTTCAATATCAAAATTGTTTTTAA---AAAA--TCTAAATTCA----TT--GTTC--GATCCGTTTTTA--AAGCTTAAACTTGTAGATGATGTCTCAT-A-AACATCGGGAGTACCGTTTATT--TGGAAATCGTTTTCTTCTGTTCGGAC-GTG------------AGAAGA-GTTTGAC-ATT----TAGAG-CTC--TGCCTCGCCTTCCAAA----TAGGCCTCTATCGTT---GTTT-TAATCC-----CG---AATTCAA--C-CC-TTATACTTACTTATATATT
gi|31520 : tTTTTCATCATCAAAATTGTATTTAA---AAAA--TCTAAATCCA----TA--GTTT--GACCCATTTTTG--AAACTTAAACTTGTAGACGATGACTCAT-A-AACATCAGGAGTACGGTTTCTT--AGAAAAC--TTTTCTTCTGTACAAAC-ATG------------AGACGA-TTTTGGC-ATT----TAGAG-CTC--TACCTCGCCTTCTAAA----TCGGTCTTTATCGTT---GTTT-TAATCC-----CG---AATTCAA--C-CC-TTATACTTACATGTATGTTTA
gi|31521 : tTTTTCATTATCAAAATTGTTTTTAAGAAAAAA--TCTAAATCCAAAGTTAAAGTTC--GACCCGTTTTTG--AAACTTGAACTTGTAGACAAAGTCTCAT-A-AACATCGGGAGTACTGTTTCTT--GGAAAACAGTTTTTT---GTACAGAC-GTG------------AGGCTA-TTTTGAC-ATT----TAGAT-CTC--TACCTCGCCTTTCAAA----TCGGCCTCTATCGTT---GTTT-TAATCC-----CG---AATTCAA--T-CC-TAATATTTACTTGTATGTTTA
gi|31522 : tTTTTCATTATCAAAATTGTTTTTAA---AAAA--TCTAAATCCA----TA--GTTC--GACCCGTTTTTG--AAGCCTAAACTTATAGACGATGTCTCAT-A-AACATCGAGAGTATGGTTTCCT--AGAAAATCGTTTTCTTCAGTTCAGAC-GTG------------AGACGA-TTTTGAT-ATT----TAGAG-CTC--TACCTCGCCGTCTAAA----TCGACCTCTATCGTT---GTTT-TAATAT-----TG---AATTCAA--CTCT-TTTTACTTACATGTATGTTTA
gi|31523 : tTTTTCATCATCAAAATTGTTTTTAA---AAAC--TCTAAATCCA----TA--GTTT--GATTTGTTTTTG--AAACTTAAACTTGTAATTGATGTCCTAT-A-ACCATTAAGAGCAGGGTTTCTT--TGTAAATTGTTTTCTTCTGTTCAGAC-CTG------------AGGTGA-TTTTGAC-ATT----TAGAG-CTC--TACCTCGCCTTCCGAA----TCGGCTTCTACCTTT---GTTT-TAATCC-----TG---AATTCAA--C-CC-TTATACT
gi|31524 : tTTTTTAT-ATCAAAATTGTTTTAAA---AAAACCTCTAAATCCA----TA--GTTA--GACCCGTTTTTG--AAGCTTAAACTTGTAGACAAAGTTTTATAA-AACATCCGGAATACGGTTTC-T--TAAAAATCG-TTTATTCTTTTCAGAC-GTGACAGAAGATGTTAGGCGA-TTTTGAT-ATT----TAGAG-CTC--TACCTCGCCTTCTAAA----TCGGGCTATATCGTT---GTTT-TAATCC-----CG---AATTCAATTT-CA-TTAT--TTACTTGTATGTTTA
gi|31525 : tTTTTCATTTTCAATTTTTTTTTAAA---AAAA--TCGTAATCCA----TA--GTTC--AACCCGTTTTTG--AAGCTTAAACCTGTAGACGATGTCTCGT-A-ATCATCGGGAGTATGGTTTCTT--TG--------------------AGAC---G------------AG------TTTGAT-ATT----TAGAG-CTC--TATCTCGCCTTCTAAA----TCGGCCTCTGTCGTT----TTT-TAATCA-----CG---AATTCAA--C-CC-TTCTACTTAAATGTATGTTTA
gi|31526 : tTTTTCATTATCAAAATTGTTTTTAA---AAAA--TCTAAATCCA----TA--GTTC--GGCCCGTTTTTTTTAAGCTTAAACTTGTAGACGATGTCTCAC-A-AACAACGGGAGTACGGTTTCTT--TGAAAAACGTTTTCTTCAGTTCAGAT-GTG------------AGGCGA-TTTTGAC-ATT----TAGAG-CTC--TACCTTGCCTTCCAAA----TCGGCCTCTATCATT---GTTT-TAATCT-----CT---AATTCGA--C-CC-TTATACTTACATGTATGTTTA
gi|31527 : TTTCGTTATCAACATTGGTTTTTA---AAAA--TCTAAATTCA----TA--GTTCCGGGCCAGATTTTG--AAGCCTAAACTTGAACACGATATCTCAT-A-T-CGTCAAGGATATGGTTTCTT--CGAAAAGCGTTTTCTTCTGTTATGAT-TTG------------AGGCGA-TTTTGACAATA----TAGCGCCTC--T-CTTCGCCTTTCAAATATTTAAATATTTATTTTT---CTTT-AAATCC-----AG---GAATGAA--C-CA-T--TGCTTACTTGAATGTTTA
gi|31528 : TCAGTATCAAG--TGTTTTTAA---ATTA--TCTAAATTTGG---TA--GTAC--GACCCGTATTTG--AATTTTTCACTTGTGGATGGTGCCTCAT-ACAAC-TCAGCGGTACGGT--CTT--CGGAAATCGTTTTCTTCTGCTTAAAT-GCG------------AGGCGA-TTTTGAC-A
gi|31528 : CATT---GTTT-AAATCC-----CG---AATTGAA--T-CT-TTAAACTTACTTTTATGggatttcccattgtttaaatcccgaattgaatctttaaacttacttttatg
gi|31529 : tcagtatcaagtgtttttaaattatctaaatttggtagtacgacccgtatttgaatttttcacttgtggatggtgcctcatacaactcagcggtacggtcttcggaaatcgttttcttctgcttaaatgcgaggcgattttgacaggatttccTCATTATCAAG--TGTTTTTAA---ATTA--TCTAAATTGG----TA--GTTC--GACCCGTATTTG--AATTTTTCACTTGT
gi|31530 : TCATTATCAAG--TGTTTTTAA---ATTA--TCTAAATTGG----TA--GTTC--GACCCGTATTTG--AATTTTTCACTTGT
gi|31531 : ---AAAA--TCTAAATTGA----GA--GT-C--GACCAAATT--G--AAGCCTTAACATGTAGACGATGTCACAT-A-AACGTCGG--------CTCCAG--TGTGACTCATTTTCTTCTGTTCAGAC-GTG------------AGCC-------AAC-AAT--------G-CTT--TACTTCACCT
gi|31532 : AATTCC----TA--GTTC--GGTCTGTTTTCG--AGGCCTCGAATTGTAAACGATGTCTCAT-A-AAAATCGGCTATAC-GTTTCCT--TGGAAATTATTTTCTCCT-TTGTGACTGTG------------AATCTATTTTTGAC-A
gi|31533 : ----TA--ATTT--GACCTGTTTT-G--GGGCCTCAACTTTTAGAAGATGTCTCGA-A-AACACTGGTGGTACGTTTTTTTTCTG-AAGTCGTTTTCTTCTGATTAACT-GTG------------AGGAGA-TTTT-AT-CTT----CAGAT-CTCTATATATAGATTTCAAAG----TCGGTATTTAACTTTAACGTTTAAAATTCAAAAACGTTTAATTCAA--C-CA-TTATTCTTACTTATAAGTTTA
gi|31534 : AGACGATGTCTCCT-A-AACATCAGCAATACGGTTTCTT--CGGGAATCGTTTTCTTCTGTTTAAAT-ATG------------AGGCGA-TTTT-----TTACCACAGAG-CCC--TACTTAGTCTTCGGAA----TTAGTCTCTACCGTT---GTCT-GAATCT-----CG---AATTGAA--C-AA-TTATACTTAGTTTTATGTTTAga
gi|31535 : GATATCCCAC-A-AGCATCGGCAGTTCGGTTTCTT--TTGAAATCGTTTTATGTTGTTCAATT-GTG------------AGACGACTTTTGAC----------------C--TACTTAGCCTTACATA-----CGGCATTTAC--TT---GTTT--AATCT-----CG---AATTGAA--C-TTGTTAAATTTACATGTATGTTCA