lowQualScore : 1 11 11111111 1111111111111111 22222222222 1
lowQualScore : 0 5 2 1 33 88888888 66666 5 33 999 1 999999 7 4444444444444444 9 33 2 8 33 8 66666666666 33 1 2 77777 2 5 3
lowQualScore : . . . . .. ........ ..... . .. ... . ...... . ................ . .. . . .. . ........... .. . . ..... . . .
lowQualScore : 1 1 5 6 88 55555555 22222 0 77 333 4 222222 1 3333333333333333 6 77 7 1 99 0 33333333333 99 9 9 11111 6 7 6
consensus : TAAAAATTGTAATCCTAGGAAAATTTCTGACTTGCTCACTGGGGATGAAACTTGGG-TTTATTATTTCGAGCC--CCAACGG-CGCATCA-----ATAAC-AAACAATGGCTTGGTAAA--AA---TCAGGCTAG--GCCGGT----C----A------TAGCAAA--G-AGGACAAGAAGCGCCAAGA-A---G--GTT--TTATATGCCA-TT-----TTCTTCAATTCTA-GTGGTCCTGTTGTACAAA
Reference ( gi|44321 ) : TAAAAATTGTAATCCTAGGAAAATTTCTGACTTGCTCACTGGGGAAGAAACTTGGG-TTTATTATTTTGAGCC--CCAATGG-TGCATCA-----ATAAC-AAACAATGGCTTGGTAAA--AA---TCAGGATAG--GCTGGT----C----A------TAGCGAA--G-AGGGCAAGAAGCGTCAAGA-A---G--ATT--TTATATGCCA-TT-----TTCTTCAATTCTA-GTGGTCCTGTTGGACAAA
gi|44322 : TAAAAATTGTAATCCTAGTAAAACTTCTGACTTGTTCACTCAGGAAGAAACTTGGGGTTTATTATCTTGAGCC--CCAACAG-CGCATCA-----ATAAC-AAACAATGGCTTGGTAAA--AA---TCAGGATAG--GCCGGT----C----A------TAGCGAA--G-AGGACAAGAAGCATCAAAA-A---G--GTT--TTATATGCCA-TT-----TTCTTCAGTTCTA-GTGGTCCTGTTGTACAAA
gi|44324 : TAAGAATTGTTATTCTAGGAAAGTTTCAGACTTGCTCACTGGGGATGAAACTTGGG-TTTATTATTTCTAGCC--CTAATGG-CGCATCA-----ATAAC-AAACAATGGCTTGGTAAA--AA---TTAGGCTAG--GCTGGT----C----A------TAGCAAA--G-AGGACAAGAAGTGCCAAGA-----------------ATGTCA-TT-----TTTATCAATTCTA-GTGGTCCTGTTGTACAAA
gi|44323 : TAAACATTGTAATCCAAGGAAAATTTCTGTCTTGCTCAATGTGGATTAAACTTGGG-TTTATTATTTTGAGCC--CCAACGG-TGCATCA-----ATAAC-TAAAAATGGCTTGGTAAA--AA---TCAGGCTAG--GTCGGT----C----A------TAGCAAA--G-AAGACAAGAAGAGCCAACT-A---G--GTT--TTATATGCCATTT-----TTTTTCAA-TATA-ATGGTCCTATTGTACAAA
gi|44325 : TAAATATTGCAATCCTAGGAAAATTTCTGACTTGCTCACTGAGGATGAAACTTTTA-TTTATTATTTTAAGCC--TCAACGG-CGTATCA-----ATAAC-AAACAATGGCTTGGTAAA--AA---ACAGGATAG--GTCGGTCATAC----A------TAGC--A--G-GGGACAAGAAGCGCCAA---------------TTGTATGCGA-TT-----GTTTTCAATTTTA-GTATTCCTGTTGTACAAA
gi|44326 : TAACAATTGTAATCCTAGGAAAATGTTCGTCTGGCTCCCTGGG-ATGAAATTTGGA-TTTATTATTTTGAGCC--CCAAAGG-CGCATCA-----ATAAC-AAATAATGACTTTGTAAA--AA---TCAGGCTAG--GC-------------------------------------------GCCAAAA-A---G--GTT--TTATATGCCA-TT-----TTCTTTAATTCTA-GTGGTCCTGTTGTACAAA
gi|44327 : TAGAAATTGTAATGCTAGGAAAATTTCGCACTAACTCACTGGGGATGAAACTTAGG-TTTATTATTATGAGCC--CCAACGG-CGCATCA-----ATAAC-AAACAATGGCTTGATAAT--GA---TTAGGCTAG--GCAGGT----C----ATACATGTAGCAAA--G-AGG
gi|44328 : AAAAATT-TA-TTCTAGGAAAATTTCTGACTTGCTCACTGGGGATGAAACTTTGG-TTTATTATTTTGAGCC--CCAACGG-CACATCA-----ATTAA-AAACAATGGCTTGGTAAA--AA---TCAGACTAG--GCCGGT----C----A------TAGCAAA--G-ATGACAAGAAGCGCTAATA-A---A--GTT--TTATATGCAA-CT-----TTCTTCAATTATA-GTGGTCCTGTTGTACAAA
gi|44329 : AAAAAATGTAATCCTAGGAAAATTTCTAACTTGGTCATTGGGAATGAAACTTAGA-TTTATTATTTTGAACC--CCAACGG-CGCATCA-----ATAAC-AAACAATTGCTTGGTAAA--TA---TCAGGCTAT--GCCGGT----C----A------TAGCAAC--G-AGGACAA-AAACG----------------T--TTATATGCCA-TC-----TTCTTCAACTCTA-GTGGTCCTGTTGTACAAA
gi|44332 : AAATT-CTGTCTTGCGTACTTGGGATGAAACTTTGG-TTTATTATTTTGAGCC--TCAACGG-C---TCA-----ATCAC-ACAC--TGGCTTGG-----------------------CCATT----C----G------TAGCAAA--G-AGGACAAGAAGCGCCAAGA-A---G--GTT--TTATATGCCA-TT-----TTCTTCAATTCTA-GTTGT
gi|44334 : TTTCTGACATTATTACTGGAGATGAGACATGGG-TACACTTTTTCGAGCCTACCA--GA-AAAATTA-----ACAAC-AAAATATGGGCTACCAAA--AACTGTC---------GCTGCC----CCACAA------TTGCCAA--A-AGATTGATCAGTGCTAAGA-AAGCA--ATG--TT---TGTTA-TT-----TTCTTTGA-TATACGTGGTCCTATTATGCAA
gi|44333 : TTTCTGACATTATTACTGGAGATGAGACATGGG-TACACTTTTTCGAGCCTACCA--GA-AAAATTA-----ACAAC-AAAATATGGGCTACCAAA--AACTGTC---------GCCGCC----CCACAA------TTGCCAA--A-AGATTGATCAGCGCTAAGAGA---GCAATG--TT---TGTTA-TT-----TTCTTTGA-TATACGTGGTCCTATTATGCAA
gi|44335 : TTTCTGACATTATTACTGGAGATGAGACATGGG-TACACTTTTTCGAGCCTACCA--GA-AAAATTA-----ACAAC-AAAATATGGGCTACCAAA--AA---
gi|44336 : TTTCTGACATAATTACTGGAGATGAGACATGGG-TACACTTTTTCGAGACTACCA--GA-AAAATTA-----ACAACAAAATATTGGCTctgtcgccaccccacaattgccaaaagattgatcagtgctaagaaagcaatgtttgttattttctttgatatacgtggtcctattatgcaa
gi|44337 : TGAGCTCCTCATAGGTGATGAAACGTGGA-TCTATTATTTCGAACC--TCAGCGACTG-GTAA-----ATAAT-AAACAGTTGTTAAGGAAA--GA---ACAAGAAAT--ACCGAT----T----A------TATCAAAACG-AATTCA--AAGTGCTTAAC-G---G--GTT--CTATACACGA-TT-----TTCGTCAATTTCA-ATGGTGCTGTTGAGCAAAaccaaaaactgtcgccgccccacaattgccaaaagattgatcagtgctaagaaagcaatgtttgttattttctttgttatacgtggttctattatgcaa
gi|44338 : GAGACTTGGG-TATACTATTTTGAGCC--TTAACGT-CATATAG-----ACAAT-AAACAGTG----GATAAAAGAA---GCCAAACAAATGCCAAT----C----A------TTGCCGA--A-CGTGCTCGAAGTGCCAA----------ATTAGTAATA---CA-TTCAACATTCTTCGATTCCA-ATGTCCCTATCGTTCAAA
gi|44339 : TGGG-TGAACTATTTTGAGCC--CCA------GCAGCAGTTATATAACAAAAAAAT------GTAAA--AA---TCATGCAAG--ATCAGT----T----A------TTTCAAA--ATAAATCA--AAGCACTAAAA-C---A--GTT--TTGCATGCAA-CT-----TTCTTTAATTCCA-GTAGTACTGTGCTACAAA
gi|44340 : AGCAAA--G-AAGACAAGAAGC--TAAGA-A---G--GCT--TTATATGCCA-TT-----TTCTTCAATTCTA-ATGGTCCTATTGAACAAA
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|44330 ): AAAAACTTTGATATAAGGAAGTTTTCAAACATTGTCACCGGTGGCGAAACGTGGATACACTTTTACGAACCACATTGGAAAGCTAGCAACCGTGTATGGGCAAACGATAGGTGCGAAAAGACCATGCATTGCAAAGACGACAGTCAGTGTTAAAAAGGTTTTGTATGCCGTTTTTTTCA
Unaligned ( gi|44331 ): AAAATTGATAAAAGCAATTTTTCAAACATTGTCACTGGCAACGAAACATGGATACACTTTTATGAATCATATTGGAAAGCTAGCAACCATGTATGGGCAACGAAAGGTCGGAAATGACCATGCATTGCCAAGAGGACAATCAGTGTTATAAAGGTTTTGTATGCCATTTTTTTCGCAATT
Alignments
lowQualScore : 11 1111 111111111
lowQualScore : 2 1 2 1 22 5 88888 2 55555 333 4 3333 2 000000000 22 4444 9999999999999999 2 33 7777 2 11 11 0 2 3 0 9
lowQualScore : . . . . .. . ..... . ..... ... . .... . ......... .. .... ................ . .. .... . .. .. . . . . .
lowQualScore : 5 9 2 8 22 0 66666 2 66666 999 4 9999 0 777777777 55 7777 5555555555555555 7 11 3333 3 22 33 5 2 4 7 4
consensus : TAAAAATTGTAATCCTAGGAAAATTTCTGAC-TTGCTCACTGGGGATGAAACTTGGG-TTTATTATTTCGAGCC--CCAACGGC--GC-ATCA-A-----TA---AC-AAACAATGGCTTGGTAAAAA---TCAGGCTAG------GCCGGT----C----A------TA---GCAAAGAGGA--CGA---GAAGCGCCAAGAAGGTTTTATATGCCA-TTTTCTTCAATTCTA-GTGGTCCTGTTGTACAAA
Reference ( family-807 ) : TAAAAATTGTAATCCTAGGAAAATTTCTGAC-TTGCTCACTGGGGATGAAACTTGGG-TTTATTATTTCGAGCC--CCAACGGC--GC-ATCA-A-----TA---AC-AAACAATGGCTTGGTAAAAA---TCAGGCTAG------GCCGGT----C----A------TA---GCAAAGAGGA--CAA---GAAGCGCCAAGAAGGTTTTATATGCCA-TTTTCTTCAATTCTA-GTGGTCCTGTTGTACAAA
gi|44321 : TAAAAATTGTAATCCTAGGAAAATTTCTGAC-TTGCTCACTGGGGAAGAAACTTGGG-TTTATTATTTTGAGCC--CCAATGGT--GC-ATCA-A-----TA---AC-AAACAATGGCTTGGTAAAAA---TCAGGATAG------GCTGGT----C----A------TA---GCGAAGAGGG--CAA---GAAGCGTCAAGAAGATTTTATATGCCA-TTTTCTTCAATTCTA-GTGGTCCTGTTGGACAAA
gi|44322 : TAAAAATTGTAATCCTAGTAAAACTTCTGAC-TTGTTCACTCAGGAAGAAACTTGGGGTTTATTATCTTGAGCC--CCAACAGC--GC-ATCA-A-----TA---AC-AAACAATGGCTTGGTAAAAA---TCAGGATAG------GCCGGT----C----A------TA---GCGAAGAGGA--CAA---GAAGCATCAAAAAGGTTTTATATGCCA-TTTTCTTCAGTTCTA-GTGGTCCTGTTGTACAAA
gi|44323 : TAAACATTGTAATCCAAGGAAAATTTCTGTC-TTGCTCAATGTGGATTAAACTTGGG-TTTATTATTTTGAGCC--CCAACGGT--GC-ATCA-A-----TA---AC-TAAAAATGGCTTGGTAAAAA---TCAGGCTAG------GTCGGT----C----A------TA---GCAAAGAAGA--CAA---GAAGAGCCAACTAGGTTTTATATGCCATTTTTTTTCAA-TATA-ATGGTCCTATTGTACAAA
gi|44324 : TAAGAATTGTTATTCTAGGAAAGTTTCAGAC-TTGCTCACTGGGGATGAAACTTGGG-TTTATTATTTCTAGCC--CTAATGGC--GC-ATCA-A-----TA---AC-AAACAATGGCTTGGTAAAAA---TTAGGCTAG------GCTGGT----C----A------TA---GCAAAGAGGA--CAA---GAAGTGCCAAGA---------ATGTCA-TTTTTATCAATTCTA-GTGGTCCTGTTGTACAAA
gi|44325 : TAAATATTGCAATCCTAGGAAAATTTCTGAC-TTGCTCACTGAGGATGAAACTTTTA-TTTATTATTTTAAGCC--TCAACGGC--GT-ATCA-A-----TA---AC-AAACAATGGCTTGGTAAAAA---ACAGGATAG------GTCGGTCATAC----A------TA---GC--AGGGGA--CAA---GAAGCGCCAA-------TTGTATGCGA-TTGTTTTCAATTTTA-GTATTCCTGTTGTACAAA
gi|44326 : TAACAATTGTAATCCTAGGAAAATGTTCGTC-TGGCTCCCTGGG-ATGAAATTTGGA-TTTATTATTTTGAGCC--CCAAAGGC--GC-ATCA-A-----TA---AC-AAATAATGACTTTGTAAAAA---TCAGGCTAG------------------------------------------------------GCGCCAAAAAGGTTTTATATGCCA-TTTTCTTTAATTCTA-GTGGTCCTGTTGTACAAA
gi|44327 : TAGAAATTGTAATGCTAGGAAAATTTCGCAC-TAACTCACTGGGGATGAAACTTAGG-TTTATTATTATGAGCC--CCAACGGC--GC-ATCA-A-----TA---AC-AAACAATGGCTTGATAATGA---TTAGGCTAG------GCAGGT----C----ATACATGTA---GCAAAGAGG
gi|44328 : AAAAATT-TA-TTCTAGGAAAATTTCTGAC-TTGCTCACTGGGGATGAAACTTTGG-TTTATTATTTTGAGCC--CCAACGGC--AC-ATCA-A-----TT---AA-AAACAATGGCTTGGTAAAAA---TCAGACTAG------GCCGGT----C----A------TA---GCAAAGATGA--CAA---GAAGCGCTAATAAAGTTTTATATGCAA-CTTTCTTCAATTATA-GTGGTCCTGTTGTACAAA
gi|44329 : AAAAAATGTAATCCTAGGAAAATTTCTAAC-TTGGTCATTGGGAATGAAACTTAGA-TTTATTATTTTGAACC--CCAACGGC--GC-ATCA-A-----TA---AC-AAACAATTGCTTGGTAAATA---TCAGGCTAT------GCCGGT----C----A------TA---GCAACGAGGA--CAA----AAACG----------TTTATATGCCA-TCTTCTTCAACTCTA-GTGGTCCTGTTGTACAAA
gi|44330 : AAAAACTTTGATATAAGGAAGTTTTCAAACATTG-TCACCGGTGGCGAAACGTGGA-TACACTTTTACGAACC--ACATTGGAAAGCTAGCA-ACCGTGTATGGGC-AAACGATAGGT--GCGAAAA------GACCAT------GC-------------A------TT---GCAAAGACGA--CAG---TCAGTGTTAAAAAGGTTTTGTATGCCG-TTTTTTTCA
gi|44332 : AAATT-CTGTC-TTGCGTACTTGGGATGAAACTTTGG-TTTATTATTTTGAGCC--TCAACGGC------TCA-A-----TC---AC-ACAC--TGGCTTGG-------------------------CCATT----C----G------TA---GCAAAGAGGA--CAA---GAAGCGCCAAGAAGGTTTTATATGCCA-TTTTCTTCAATTCTA-GTTGT
gi|44333 : TTTCTGAC-ATTATTACTGGAGATGAGACATGGG-TACACTTTTTCGAGCCTACCA--GAA--AA-ATTA-A-----CA---AC-AAAATATGGGCTACCAAAAA----CTGTC---------GCCGCC----CCACAA------TT---GCCAAAAGAT--TGA---TCAGCGCTAAGAGAGCAATGTTTGTTA-TTTTCTTTGA-TATACGTGGTCCTATTATGCAA
gi|44334 : TTTCTGAC-ATTATTACTGGAGATGAGACATGGG-TACACTTTTTCGAGCCTACCA--GAA--AA-ATTA-A-----CA---AC-AAAATATGGGCTACCAAAAACTGTC--GCT--------GCC--C----C----A------CAATTGCCAAAAGAT--TGA---TCAGTGCTAAGAAAGCAATGTTTGTTA-TTTTCTTTGA-TATACGTGGTCCTATTATGCAA
gi|44335 : TTTCTGAC-ATTATTACTGGAGATGAGACATGGG-TACACTTTTTCGAGCCTACCA--GAA--AA-ATTA-A-----CA---AC-AAAATATGGGCTACCAAAAACTGTC--GCCA--------CC--C----C----A------CAATTGCCAAAAGAT--TGA---TCAGTGCTAAGAAAGCAATGTTTGTTA-TTTTCTTTGA-TATACGTGGTCCTATTATGCAA
gi|44336 : TTTCTGAC-ATAATTACTGGAGATGAGACATGGG-TACACTTTTTCGAGACTACCA--GAA--AA-ATTA-A-----CA---ACAAAATATTGGC-TACCAAAAA----CTGTC---------GCCGCC----CCACAA------TT---GCCAAAAGAT--TGA---TCAGTGCTAAGAAAGCAATGTTTGTTA-TTTTCTTT-GTTATACGTGGTTCTATTATGCAA
gi|44337 : TGAG-CTCCTCATAGGTGATGAAACGTGGA-TCTATTATTTCGAACC--TCAGCGAC--TG-GTAA-A-----TA---AT-AAACAGTTGTTAAGGAAAGA---ACAAGAAAT------ACCGAT----T----A------TA---TCAAAACGAATTCA-----AAGTGCTTAACGGGTTCTATACACGA-TTTTCGTCAATTTCA-ATGGTGCTGTTGAGCAAA
gi|44338 : GAGACTTGGG-TATACTATTTTGAGCC--TTAACGTC--AT-ATAG-A-----CA---AT-AAACAGTG----GATAAAAG-----AAGCCAAACAAATGCCAAT----C----A------TT---GCCGAACGTG--CTC---GAAGTGCCAAATTAGTAATACATTCAA-CATTCTTCGATTCCA-ATGTCCCTATCGTTCAAA
gi|44339 : TGGG-TGAACTATTTTGAGCC--CCAGCAGC--A--GTTATA-----TA---ACAAAAAAAT------GTAAAAA---TCATGCAAG------ATCAGT----T----A------TT---TCAAA----A--TAAATCAAAGCACTAAAACAGTTTTGCATGCAA-CTTTCTTTAATTCCA-GTAGTACTGTGCTACAAA
gi|44340 : A---GCAAAGAAGA--CAA---GAAGC--TAAGAAGGCTTTATATGCCA-TTTTCTTCAATTCTA-ATGGTCCTATTGAACAAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|44331 ): AAAATTGATAAAAGCAATTTTTCAAACATTGTCACTGGCAACGAAACATGGATACACTTTTATGAATCATATTGGAAAGCTAGCAACCATGTATGGGCAACGAAAGGTCGGAAATGACCATGCATTGCCAAGAGGACAATCAGTGTTATAAAGGTTTTGTATGCCATTTTTTTCGCAATT
Alignments
lowQualScore : 11 1111 111111111
lowQualScore : 2 1 2 1 22 5 88888 2 55555 333 4 3333 2 000000000 22 4444 9999999999999999 2 4 77777 2 11 11 0 2 3 0 9
lowQualScore : . . . . .. . ..... . ..... ... . .... . ......... .. .... ................ . . ..... . .. .. . . . . .
lowQualScore : 5 9 2 8 22 0 66666 2 66666 999 4 9999 0 777777777 55 7777 5555555555555555 7 9 66666 3 22 33 5 2 4 7 4
consensus : TAAAAATTGTAATCCTAGGAAAATTTCTGAC-TTGCTCACTGGGGATGAAACTTGGG-TTTATTATTTCGAGCC--CCAACGGC--GC-ATCA-A-----TA---AC-AAACAATGGCTTGGTAAAAA---TCAGGCTAG------GCCGGT----C----A------TA---GCAAAGAGGACGA----GAAGCGCCAAGAAGGTTTTATATGCCA-TTTTCTTCAATTCTA-GTGGTCCTGTTGTACAAA
Reference ( family-807 ) : TAAAAATTGTAATCCTAGGAAAATTTCTGAC-TTGCTCACTGGGGATGAAACTTGGG-TTTATTATTTCGAGCC--CCAACGGC--GC-ATCA-A-----TA---AC-AAACAATGGCTTGGTAAAAA---TCAGGCTAG------GCCGGT----C----A------TA---GCAAAGAGGACGA----GAAGCGCCAAGAAGGTTTTATATGCCA-TTTTCTTCAATTCTA-GTGGTCCTGTTGTACAAA
gi|44321 : TAAAAATTGTAATCCTAGGAAAATTTCTGAC-TTGCTCACTGGGGAAGAAACTTGGG-TTTATTATTTTGAGCC--CCAATGGT--GC-ATCA-A-----TA---AC-AAACAATGGCTTGGTAAAAA---TCAGGATAG------GCTGGT----C----A------TA---GCGAAGAGGGCAA----GAAGCGTCAAGAAGATTTTATATGCCA-TTTTCTTCAATTCTA-GTGGTCCTGTTGGACAAA
gi|44322 : TAAAAATTGTAATCCTAGTAAAACTTCTGAC-TTGTTCACTCAGGAAGAAACTTGGGGTTTATTATCTTGAGCC--CCAACAGC--GC-ATCA-A-----TA---AC-AAACAATGGCTTGGTAAAAA---TCAGGATAG------GCCGGT----C----A------TA---GCGAAGAGGACAA----GAAGCATCAAAAAGGTTTTATATGCCA-TTTTCTTCAGTTCTA-GTGGTCCTGTTGTACAAA
gi|44323 : TAAACATTGTAATCCAAGGAAAATTTCTGTC-TTGCTCAATGTGGATTAAACTTGGG-TTTATTATTTTGAGCC--CCAACGGT--GC-ATCA-A-----TA---AC-TAAAAATGGCTTGGTAAAAA---TCAGGCTAG------GTCGGT----C----A------TA---GCAAAGAAGACAA----GAAGAGCCAACTAGGTTTTATATGCCATTTTTTTTCAA-TATA-ATGGTCCTATTGTACAAA
gi|44324 : TAAGAATTGTTATTCTAGGAAAGTTTCAGAC-TTGCTCACTGGGGATGAAACTTGGG-TTTATTATTTCTAGCC--CTAATGGC--GC-ATCA-A-----TA---AC-AAACAATGGCTTGGTAAAAA---TTAGGCTAG------GCTGGT----C----A------TA---GCAAAGAGGACAA----GAAGTGCCAAGA---------ATGTCA-TTTTTATCAATTCTA-GTGGTCCTGTTGTACAAA
gi|44325 : TAAATATTGCAATCCTAGGAAAATTTCTGAC-TTGCTCACTGAGGATGAAACTTTTA-TTTATTATTTTAAGCC--TCAACGGC--GT-ATCA-A-----TA---AC-AAACAATGGCTTGGTAAAAA---ACAGGATAG------GTCGGTCATAC----A------TA---GC--AGGGGACAA----GAAGCGCCAA-------TTGTATGCGA-TTGTTTTCAATTTTA-GTATTCCTGTTGTACAAA
gi|44326 : TAACAATTGTAATCCTAGGAAAATGTTCGTC-TGGCTCCCTGGG-ATGAAATTTGGA-TTTATTATTTTGAGCC--CCAAAGGC--GC-ATCA-A-----TA---AC-AAATAATGACTTTGTAAAAA---TCAGGCTAG-----------------------------------------------------GCGCCAAAAAGGTTTTATATGCCA-TTTTCTTTAATTCTA-GTGGTCCTGTTGTACAAA
gi|44327 : TAGAAATTGTAATGCTAGGAAAATTTCGCAC-TAACTCACTGGGGATGAAACTTAGG-TTTATTATTATGAGCC--CCAACGGC--GC-ATCA-A-----TA---AC-AAACAATGGCTTGATAATGA---TTAGGCTAG------GCAGGT----C----ATACATGTA---GCAAAGAGG
gi|44328 : AAAAATT-TA-TTCTAGGAAAATTTCTGAC-TTGCTCACTGGGGATGAAACTTTGG-TTTATTATTTTGAGCC--CCAACGGC--AC-ATCA-A-----TT---AA-AAACAATGGCTTGGTAAAAA---TCAGACTAG------GCCGGT----C----A------TA---GCAAAGATGACAA----GAAGCGCTAATAAAGTTTTATATGCAA-CTTTCTTCAATTATA-GTGGTCCTGTTGTACAAA
gi|44329 : AAAAAATGTAATCCTAGGAAAATTTCTAAC-TTGGTCATTGGGAATGAAACTTAGA-TTTATTATTTTGAACC--CCAACGGC--GC-ATCA-A-----TA---AC-AAACAATTGCTTGGTAAATA---TCAGGCTAT------GCCGGT----C----A------TA---GCAACGAGGAC-A----AAAACG----------TTTATATGCCA-TCTTCTTCAACTCTA-GTGGTCCTGTTGTACAAA
gi|44330 : AAAAACTTTGATATAAGGAAGTTTTCAAACATTG-TCACCGGTGGCGAAACGTGGA-TACACTTTTACGAACC--ACATTGGAAAGCTAGCA-ACCGTGTATGGGC-AAACGATAGGT--GCGAAAA------GACCAT------GC-------------A------TT---GCAAAGACGACAG----TCAGTGTTAAAAAGGTTTTGTATGCCG-TTTTTTTCA
gi|44332 : AAATT-CTGTC-TTGCGTACTTGGGATGAAACTTTGG-TTTATTATTTTGAGCC--TCAACGGC------TCA-A-----TC---AC-ACAC--TGGCTTGG-------------------------CCATT----C----G------TA---GCAAAGAGGACAA----GAAGCGCCAAGAAGGTTTTATATGCCA-TTTTCTTCAATTCTA-GTTGT
gi|44333 : TTTCTGAC-ATTATTACTGGAGATGAGACATGGG-TACACTTTTTCGAGCCTACCA--GAA--AA-ATTA-A-----CA---AC-AAAATATGGGCTACCAAAAA----CTGTC---------GCCGCC----CCACAA------TT---GCCAAAAGATTGA----TCAGCGCTAAGAGAGCAATGTTTGTTA-TTTTCTTTGA-TATACGTGGTCCTATTATGCAA
gi|44334 : TTTCTGAC-ATTATTACTGGAGATGAGACATGGG-TACACTTTTTCGAGCCTACCA--GAA--AA-ATTA-A-----CA---AC-AAAATATGGGCTACCAAAAACTGTC--GCT--------GCC--C----C----A------CAATTGCCAAAAGATTGA----TCAGTGCTAAGAAAGCAATGTTTGTTA-TTTTCTTTGA-TATACGTGGTCCTATTATGCAA
gi|44335 : TTTCTGAC-ATTATTACTGGAGATGAGACATGGG-TACACTTTTTCGAGCCTACCA--GAA--AA-ATTA-A-----CA---AC-AAAATATGGGCTACCAAAAACTGTC--GCCA--------CC--C----C----A------CAATTGCCAAAAGATTGA----TCAGTGCTAAGAAAGCAATGTTTGTTA-TTTTCTTTGA-TATACGTGGTCCTATTATGCAA
gi|44336 : TTTCTGAC-ATAATTACTGGAGATGAGACATGGG-TACACTTTTTCGAGACTACCA--GAA--AA-ATTA-A-----CA---ACAAAATATTGGC-TACCAAAAA----CTGTC---------GCCGCC----CCACAA------TT---GCCAAAAGATTGA----TCAGTGCTAAGAAAGCAATGTTTGTTA-TTTTCTTT-GTTATACGTGGTTCTATTATGCAA
gi|44337 : TGAG-CTCCTCATAGGTGATGAAACGTGGA-TCTATTATTTCGAACC--TCAGCGAC--TG-GTAA-A-----TA---AT-AAACAGTTGTTAAGGAAAGA---ACAAGAAAT------ACCGAT----T----A------TA---TCAAA----ACGAATTCAAAGTGCTTAACGGGTTCTATACACGA-TTTTCGTCAATTTCA-ATGGTGCTGTTGAGCAAA
gi|44338 : GAGACTTGGG-TATACTATTTTGAGCC--TTAACGTC--AT-ATAG-A-----CA---AT-AAACAGTG----GATAAAAG-----AAGCCAAACAAATGCCAAT----C----A------TT---GCCGAACGTGCTC----GAAGTGCCAAATTAGTAATACATTCAA-CATTCTTCGATTCCA-ATGTCCCTATCGTTCAAA
gi|44339 : TGGG-TGAACTATTTTGAGCC--CCAGCAGC--A--GTTATA-----TA---ACAAAAAAAT------GTAAAAA---TCATGCAAG------ATCAGT----T----A------TT---TCAAAATAAATCA-----AAGCACTAAAACAGTTTTGCATGCAA-CTTTCTTTAATTCCA-GTAGTACTGTGCTACAAA
gi|44340 : A---GCAAAGAAGACAA----GAAGC--TAAGAAGGCTTTATATGCCA-TTTTCTTCAATTCTA-ATGGTCCTATTGAACAAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|44331 ): AAAATTGATAAAAGCAATTTTTCAAACATTGTCACTGGCAACGAAACATGGATACACTTTTATGAATCATATTGGAAAGCTAGCAACCATGTATGGGCAACGAAAGGTCGGAAATGACCATGCATTGCCAAGAGGACAATCAGTGTTATAAAGGTTTTGTATGCCATTTTTTTCGCAATT
Alignments
lowQualScore : 11 1111 111111111
lowQualScore : 2 1 2 1 22 5 88888 2 55555 333 4 3333 2 000000000 22 4444 9999999999999999 2 4 77777 2 11 11 0 2 3 0 9
lowQualScore : . . . . .. . ..... . ..... ... . .... . ......... .. .... ................ . . ..... . .. .. . . . . .
lowQualScore : 5 9 2 8 22 0 66666 2 66666 999 4 9999 0 777777777 55 7777 5555555555555555 7 9 66666 3 22 33 5 2 4 7 4
consensus : TAAAAATTGTAATCCTAGGAAAATTTCTGAC-TTGCTCACTGGGGATGAAACTTGGG-TTTATTATTTCGAGCC--CCAACGGC--GC-ATCA-A-----TA---AC-AAACAATGGCTTGGTAAAAA---TCAGGCTAG------GCCGGT----C----A------TA---GCAAAGAGGACGA----GAAGCGCCAAGAAGGTTTTATATGCCA-TTTTCTTCAATTCTA-GTGGTCCTGTTGTACAAA
Reference ( family-807 ) : TAAAAATTGTAATCCTAGGAAAATTTCTGAC-TTGCTCACTGGGGATGAAACTTGGG-TTTATTATTTCGAGCC--CCAACGGC--GC-ATCA-A-----TA---AC-AAACAATGGCTTGGTAAAAA---TCAGGCTAG------GCCGGT----C----A------TA---GCAAAGAGGACGA----GAAGCGCCAAGAAGGTTTTATATGCCA-TTTTCTTCAATTCTA-GTGGTCCTGTTGTACAAA
gi|44321 : TAAAAATTGTAATCCTAGGAAAATTTCTGAC-TTGCTCACTGGGGAAGAAACTTGGG-TTTATTATTTTGAGCC--CCAATGGT--GC-ATCA-A-----TA---AC-AAACAATGGCTTGGTAAAAA---TCAGGATAG------GCTGGT----C----A------TA---GCGAAGAGGGCAA----GAAGCGTCAAGAAGATTTTATATGCCA-TTTTCTTCAATTCTA-GTGGTCCTGTTGGACAAA
gi|44322 : TAAAAATTGTAATCCTAGTAAAACTTCTGAC-TTGTTCACTCAGGAAGAAACTTGGGGTTTATTATCTTGAGCC--CCAACAGC--GC-ATCA-A-----TA---AC-AAACAATGGCTTGGTAAAAA---TCAGGATAG------GCCGGT----C----A------TA---GCGAAGAGGACAA----GAAGCATCAAAAAGGTTTTATATGCCA-TTTTCTTCAGTTCTA-GTGGTCCTGTTGTACAAA
gi|44323 : TAAACATTGTAATCCAAGGAAAATTTCTGTC-TTGCTCAATGTGGATTAAACTTGGG-TTTATTATTTTGAGCC--CCAACGGT--GC-ATCA-A-----TA---AC-TAAAAATGGCTTGGTAAAAA---TCAGGCTAG------GTCGGT----C----A------TA---GCAAAGAAGACAA----GAAGAGCCAACTAGGTTTTATATGCCATTTTTTTTCAA-TATA-ATGGTCCTATTGTACAAA
gi|44324 : TAAGAATTGTTATTCTAGGAAAGTTTCAGAC-TTGCTCACTGGGGATGAAACTTGGG-TTTATTATTTCTAGCC--CTAATGGC--GC-ATCA-A-----TA---AC-AAACAATGGCTTGGTAAAAA---TTAGGCTAG------GCTGGT----C----A------TA---GCAAAGAGGACAA----GAAGTGCCAAGA---------ATGTCA-TTTTTATCAATTCTA-GTGGTCCTGTTGTACAAA
gi|44325 : TAAATATTGCAATCCTAGGAAAATTTCTGAC-TTGCTCACTGAGGATGAAACTTTTA-TTTATTATTTTAAGCC--TCAACGGC--GT-ATCA-A-----TA---AC-AAACAATGGCTTGGTAAAAA---ACAGGATAG------GTCGGTCATAC----A------TA---GC--AGGGGACAA----GAAGCGCCAA-------TTGTATGCGA-TTGTTTTCAATTTTA-GTATTCCTGTTGTACAAA
gi|44326 : TAACAATTGTAATCCTAGGAAAATGTTCGTC-TGGCTCCCTGGG-ATGAAATTTGGA-TTTATTATTTTGAGCC--CCAAAGGC--GC-ATCA-A-----TA---AC-AAATAATGACTTTGTAAAAA---TCAGGCTAG-----------------------------------------------------GCGCCAAAAAGGTTTTATATGCCA-TTTTCTTTAATTCTA-GTGGTCCTGTTGTACAAA
gi|44327 : TAGAAATTGTAATGCTAGGAAAATTTCGCAC-TAACTCACTGGGGATGAAACTTAGG-TTTATTATTATGAGCC--CCAACGGC--GC-ATCA-A-----TA---AC-AAACAATGGCTTGATAATGA---TTAGGCTAG------GCAGGT----C----ATACATGTA---GCAAAGAGG
gi|44328 : AAAAATT-TA-TTCTAGGAAAATTTCTGAC-TTGCTCACTGGGGATGAAACTTTGG-TTTATTATTTTGAGCC--CCAACGGC--AC-ATCA-A-----TT---AA-AAACAATGGCTTGGTAAAAA---TCAGACTAG------GCCGGT----C----A------TA---GCAAAGATGACAA----GAAGCGCTAATAAAGTTTTATATGCAA-CTTTCTTCAATTATA-GTGGTCCTGTTGTACAAA
gi|44329 : AAAAAATGTAATCCTAGGAAAATTTCTAAC-TTGGTCATTGGGAATGAAACTTAGA-TTTATTATTTTGAACC--CCAACGGC--GC-ATCA-A-----TA---AC-AAACAATTGCTTGGTAAATA---TCAGGCTAT------GCCGGT----C----A------TA---GCAACGAGGAC-A----AAAACG----------TTTATATGCCA-TCTTCTTCAACTCTA-GTGGTCCTGTTGTACAAA
gi|44330 : AAAAACTTTGATATAAGGAAGTTTTCAAACATTG-TCACCGGTGGCGAAACGTGGA-TACACTTTTACGAACC--ACATTGGAAAGCTAGCA-ACCGTGTATGGGC-AAACGATAGGT--GCGAAAA------GACCAT------GC-------------A------TT---GCAAAGACGACAG----TCAGTGTTAAAAAGGTTTTGTATGCCG-TTTTTTTCA
gi|44332 : AAATT-CTGTC-TTGCGTACTTGGGATGAAACTTTGG-TTTATTATTTTGAGCC--TCAACGGC------TCA-A-----TC---AC-ACAC--TGGCTTGG-------------------------CCATT----C----G------TA---GCAAAGAGGACAA----GAAGCGCCAAGAAGGTTTTATATGCCA-TTTTCTTCAATTCTA-GTTGT
gi|44333 : TTTCTGAC-ATTATTACTGGAGATGAGACATGGG-TACACTTTTTCGAGCCTACCA--GAA--AA-ATTA-A-----CA---AC-AAAATATGGGCTACCAAAAA----CTGTC---------GCCGCC----CCACAA------TT---GCCAAAAGATTGA----TCAGCGCTAAGAGAGCAATGTTTGTTA-TTTTCTTTGA-TATACGTGGTCCTATTATGCAA
gi|44334 : TTTCTGAC-ATTATTACTGGAGATGAGACATGGG-TACACTTTTTCGAGCCTACCA--GAA--AA-ATTA-A-----CA---AC-AAAATATGGGCTACCAAAAACTGTC--GCT--------GCC--C----C----A------CAATTGCCAAAAGATTGA----TCAGTGCTAAGAAAGCAATGTTTGTTA-TTTTCTTTGA-TATACGTGGTCCTATTATGCAA
gi|44335 : TTTCTGAC-ATTATTACTGGAGATGAGACATGGG-TACACTTTTTCGAGCCTACCA--GAA--AA-ATTA-A-----CA---AC-AAAATATGGGCTACCAAAAACTGTC--GCCA--------CC--C----C----A------CAATTGCCAAAAGATTGA----TCAGTGCTAAGAAAGCAATGTTTGTTA-TTTTCTTTGA-TATACGTGGTCCTATTATGCAA
gi|44336 : TTTCTGAC-ATAATTACTGGAGATGAGACATGGG-TACACTTTTTCGAGACTACCA--GAA--AA-ATTA-A-----CA---ACAAAATATTGGC-TACCAAAAA----CTGTC---------GCCGCC----CCACAA------TT---GCCAAAAGATTGA----TCAGTGCTAAGAAAGCAATGTTTGTTA-TTTTCTTT-GTTATACGTGGTTCTATTATGCAA
gi|44337 : TGAG-CTCCTCATAGGTGATGAAACGTGGA-TCTATTATTTCGAACC--TCAGCGAC--TG-GTAA-A-----TA---AT-AAACAGTTGTTAAGGAAAGA---ACAAGAAAT------ACCGAT----T----A------TA---TCAAA----ACGAATTCAAAGTGCTTAACGGGTTCTATACACGA-TTTTCGTCAATTTCA-ATGGTGCTGTTGAGCAAA
gi|44338 : GAGACTTGGG-TATACTATTTTGAGCC--TTAACGTC--AT-ATAG-A-----CA---AT-AAACAGTG----GATAAAAG-----AAGCCAAACAAATGCCAAT----C----A------TT---GCCGAACGTGCTC----GAAGTGCCAAATTAGTAATACATTCAA-CATTCTTCGATTCCA-ATGTCCCTATCGTTCAAA
gi|44339 : TGGG-TGAACTATTTTGAGCC--CCAGCAGC--A--GTTATA-----TA---ACAAAAAAAT------GTAAAAA---TCATGCAAG------ATCAGT----T----A------TT---TCAAAATAAATCA-----AAGCACTAAAACAGTTTTGCATGCAA-CTTTCTTTAATTCCA-GTAGTACTGTGCTACAAA
gi|44340 : A---GCAAAGAAGACAA----GAAGC--TAAGAAGGCTTTATATGCCA-TTTTCTTCAATTCTA-ATGGTCCTATTGAACAAA
blockSeqs : A T G T TA A AAGCT T CCGTG TGG A CTGT A CAAACAAAT GG CATA ATACATGTA G A ATTCA A AG TT T T C
blockSeqs : . C . T TA A GC . . . A CTGT A TAG GG . CACAATT A A G C AG TT . T C
blockSeqs : . C . T TA A GC . . . . T A TAG GG . CACAATT A A G G AG TT . T C
blockSeqs : . C . T TA A GC . . . . T A TAG GG . ACAATT A A G A AA TT . T C
blockSeqs : . C . T . A GT . . . . T A TAG GG . ACAATT A A G T AG TT . T .
blockSeqs : . C . T . A GC . . . . A A TAG GG . ATA A A G A AG TT . C .
blockSeqs : . C . T . A GC . . . . T A TAG GG . ATA A A A G GA TT . T .
blockSeqs : . G . T . A AC . . . . T A TAG AT . ATA A G T G AA AA . T .
blockSeqs : . C . A . T GC . . . . T T TAT GC . ATA C G G G AA AA . T .
blockSeqs : . A . T . A AA . . . . T T CAT GC . ATA C G T G AA AA . T .
blockSeqs : . A . A . G AA . . . . A A AAT GA . ATA C G T G GG AA . T .
blockSeqs : . A . A . A AA . . . . T A AAG AA . ATT C G T A TA TC . T .
blockSeqs : . A . A . G AA . . . . . A CA AG . GTA A T T A CA AA . . .
blockSeqs : . C . A . . TG . . . . . . T . . ATA C C G A AG TT . . .
blockSeqs : . . . C . . AT . . . . . . . . . ATT A A G G . TT . . .
blockSeqs : . A . . A . . . . . . . . . ATT A . . . . T . . .
blockSeqs : . G . . . . . . . . . . . . . . . . . . . .
blockSeqs : .
blockSeqCons :
originalCons : TAAAAATTGTAATCCTAGGAAAATTTCTGAC-TTGCTCACTGGGGATGAAACTTGGG-TTTATTATTTCGAGCC--CCAACGGC--GC-ATCA-A-----TA---AC-AAACAATGGCTTGGTAAAAA---TCAGGCTAG------GCCGGT----C----A------TA---GCAAAGAGGACGA----GAAGCGCCAAGAAGGTTTTATATGCCA-TTTTCTTCAATTCTA-GTGGTCCTGTTGTACAAA
finalCons : TAAAAATTGTAATCCTAGGAAAATTTCTGAC-TTGCTCACTGGGGATGAAACTTGGG-TTTATTATTTCGAGCC--CCAACGGC--GC-ATCA-A-----TA---AC-AAACAATGGCTTGGTAAAAA---TCAGGCTAG------GCCGGT----C----A------TA---GCAAAGAGGACGA----GAAGCGCCAAGAAGGTTTTATATGCCA-TTTTCTTCAATTCTA-GTGGTCCTGTTGTACAAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|44331 ): AAAATTGATAAAAGCAATTTTTCAAACATTGTCACTGGCAACGAAACATGGATACACTTTTATGAATCATATTGGAAAGCTAGCAACCATGTATGGGCAACGAAAGGTCGGAAATGACCATGCATTGCCAAGAGGACAATCAGTGTTATAAAGGTTTTGTATGCCATTTTTTTCGCAATT
Alignments
lowQualScore : 11 1111 111111111
lowQualScore : 2 1 2 1 22 5 88888 2 55555 333 4 3333 2 000000000 22 4444 9999999999999999 2 4 77777 2 11 11 0 2 3 0 9
lowQualScore : . . . . .. . ..... . ..... ... . .... . ......... .. .... ................ . . ..... . .. .. . . . . .
lowQualScore : 5 9 2 8 22 0 66666 2 66666 999 4 9999 0 777777777 55 7777 5555555555555555 7 9 66666 3 22 33 5 2 4 7 4
consensus : TAAAAATTGTAATCCTAGGAAAATTTCTGAC-TTGCTCACTGGGGATGAAACTTGGG-TTTATTATTTCGAGCC--CCAACGGC--GC-ATCA-A-----TA---AC-AAACAATGGCTTGGTAAAAA---TCAGGCTAG------GCCGGT----C----A------TA---GCAAAGAGGACGA----GAAGCGCCAAGAAGGTTTTATATGCCA-TTTTCTTCAATTCTA-GTGGTCCTGTTGTACAAA
Reference ( family-807 ) : TAAAAATTGTAATCCTAGGAAAATTTCTGAC-TTGCTCACTGGGGATGAAACTTGGG-TTTATTATTTCGAGCC--CCAACGGC--GC-ATCA-A-----TA---AC-AAACAATGGCTTGGTAAAAA---TCAGGCTAG------GCCGGT----C----A------TA---GCAAAGAGGACGA----GAAGCGCCAAGAAGGTTTTATATGCCA-TTTTCTTCAATTCTA-GTGGTCCTGTTGTACAAA
gi|44321 : TAAAAATTGTAATCCTAGGAAAATTTCTGAC-TTGCTCACTGGGGAAGAAACTTGGG-TTTATTATTTTGAGCC--CCAATGGT--GC-ATCA-A-----TA---AC-AAACAATGGCTTGGTAAAAA---TCAGGATAG------GCTGGT----C----A------TA---GCGAAGAGGGCAA----GAAGCGTCAAGAAGATTTTATATGCCA-TTTTCTTCAATTCTA-GTGGTCCTGTTGGACAAA
gi|44322 : TAAAAATTGTAATCCTAGTAAAACTTCTGAC-TTGTTCACTCAGGAAGAAACTTGGGGTTTATTATCTTGAGCC--CCAACAGC--GC-ATCA-A-----TA---AC-AAACAATGGCTTGGTAAAAA---TCAGGATAG------GCCGGT----C----A------TA---GCGAAGAGGACAA----GAAGCATCAAAAAGGTTTTATATGCCA-TTTTCTTCAGTTCTA-GTGGTCCTGTTGTACAAA
gi|44323 : TAAACATTGTAATCCAAGGAAAATTTCTGTC-TTGCTCAATGTGGATTAAACTTGGG-TTTATTATTTTGAGCC--CCAACGGT--GC-ATCA-A-----TA---AC-TAAAAATGGCTTGGTAAAAA---TCAGGCTAG------GTCGGT----C----A------TA---GCAAAGAAGACAA----GAAGAGCCAACTAGGTTTTATATGCCATTTTTTTTCAA-TATA-ATGGTCCTATTGTACAAA
gi|44324 : TAAGAATTGTTATTCTAGGAAAGTTTCAGAC-TTGCTCACTGGGGATGAAACTTGGG-TTTATTATTTCTAGCC--CTAATGGC--GC-ATCA-A-----TA---AC-AAACAATGGCTTGGTAAAAA---TTAGGCTAG------GCTGGT----C----A------TA---GCAAAGAGGACAA----GAAGTGCCAAGA---------ATGTCA-TTTTTATCAATTCTA-GTGGTCCTGTTGTACAAA
gi|44325 : TAAATATTGCAATCCTAGGAAAATTTCTGAC-TTGCTCACTGAGGATGAAACTTTTA-TTTATTATTTTAAGCC--TCAACGGC--GT-ATCA-A-----TA---AC-AAACAATGGCTTGGTAAAAA---ACAGGATAG------GTCGGTCATAC----A------TA---GC--AGGGGACAA----GAAGCGCCAA-------TTGTATGCGA-TTGTTTTCAATTTTA-GTATTCCTGTTGTACAAA
gi|44326 : TAACAATTGTAATCCTAGGAAAATGTTCGTC-TGGCTCCCTGGG-ATGAAATTTGGA-TTTATTATTTTGAGCC--CCAAAGGC--GC-ATCA-A-----TA---AC-AAATAATGACTTTGTAAAAA---TCAGGCTAG-----------------------------------------------------GCGCCAAAAAGGTTTTATATGCCA-TTTTCTTTAATTCTA-GTGGTCCTGTTGTACAAA
gi|44327 : TAGAAATTGTAATGCTAGGAAAATTTCGCAC-TAACTCACTGGGGATGAAACTTAGG-TTTATTATTATGAGCC--CCAACGGC--GC-ATCA-A-----TA---AC-AAACAATGGCTTGATAATGA---TTAGGCTAG------GCAGGT----C----ATACATGTA---GCAAAGAGG
gi|44328 : AAAAATT-TA-TTCTAGGAAAATTTCTGAC-TTGCTCACTGGGGATGAAACTTTGG-TTTATTATTTTGAGCC--CCAACGGC--AC-ATCA-A-----TT---AA-AAACAATGGCTTGGTAAAAA---TCAGACTAG------GCCGGT----C----A------TA---GCAAAGATGACAA----GAAGCGCTAATAAAGTTTTATATGCAA-CTTTCTTCAATTATA-GTGGTCCTGTTGTACAAA
gi|44329 : AAAAAATGTAATCCTAGGAAAATTTCTAAC-TTGGTCATTGGGAATGAAACTTAGA-TTTATTATTTTGAACC--CCAACGGC--GC-ATCA-A-----TA---AC-AAACAATTGCTTGGTAAATA---TCAGGCTAT------GCCGGT----C----A------TA---GCAACGAGGAC-A----AAAACG----------TTTATATGCCA-TCTTCTTCAACTCTA-GTGGTCCTGTTGTACAAA
gi|44330 : AAAAACTTTGATATAAGGAAGTTTTCAAACATTG-TCACCGGTGGCGAAACGTGGA-TACACTTTTACGAACC--ACATTGGAAAGCTAGCA-ACCGTGTATGGGC-AAACGATAGGT--GCGAAAA------GACCAT------GC-------------A------TT---GCAAAGACGACAG----TCAGTGTTAAAAAGGTTTTGTATGCCG-TTTTTTTCA
gi|44332 : AAATT-CTGTC-TTGCGTACTTGGGATGAAACTTTGG-TTTATTATTTTGAGCC--TCAACGGC------TCA-A-----TC---AC-ACAC--TGGCTTGG-------------------------CCATT----C----G------TA---GCAAAGAGGACAA----GAAGCGCCAAGAAGGTTTTATATGCCA-TTTTCTTCAATTCTA-GTTGT
gi|44333 : TTTCTGAC-ATTATTACTGGAGATGAGACATGGG-TACACTTTTTCGAGCCTACCA--GAA--AA-ATTA-A-----CA---AC-AAAATATGGGCTACCAAAAA----CTGTC---------GCCGCC----CCACAA------TT---GCCAAAAGATTGA----TCAGCGCTAAGAGAGCAATGTTTGTTA-TTTTCTTTGA-TATACGTGGTCCTATTATGCAA
gi|44334 : TTTCTGAC-ATTATTACTGGAGATGAGACATGGG-TACACTTTTTCGAGCCTACCA--GAA--AA-ATTA-A-----CA---AC-AAAATATGGGCTACCAAAAACTGTC--GCT--------GCC--C----C----A------CAATTGCCAAAAGATTGA----TCAGTGCTAAGAAAGCAATGTTTGTTA-TTTTCTTTGA-TATACGTGGTCCTATTATGCAA
gi|44335 : TTTCTGAC-ATTATTACTGGAGATGAGACATGGG-TACACTTTTTCGAGCCTACCA--GAA--AA-ATTA-A-----CA---AC-AAAATATGGGCTACCAAAAACTGTC--GCCA--------CC--C----C----A------CAATTGCCAAAAGATTGA----TCAGTGCTAAGAAAGCAATGTTTGTTA-TTTTCTTTGA-TATACGTGGTCCTATTATGCAA
gi|44336 : TTTCTGAC-ATAATTACTGGAGATGAGACATGGG-TACACTTTTTCGAGACTACCA--GAA--AA-ATTA-A-----CA---ACAAAATATTGGC-TACCAAAAA----CTGTC---------GCCGCC----CCACAA------TT---GCCAAAAGATTGA----TCAGTGCTAAGAAAGCAATGTTTGTTA-TTTTCTTT-GTTATACGTGGTTCTATTATGCAA
gi|44337 : TGAG-CTCCTCATAGGTGATGAAACGTGGA-TCTATTATTTCGAACC--TCAGCGAC--TG-GTAA-A-----TA---AT-AAACAGTTGTTAAGGAAAGA---ACAAGAAAT------ACCGAT----T----A------TA---TCAAA----ACGAATTCAAAGTGCTTAACGGGTTCTATACACGA-TTTTCGTCAATTTCA-ATGGTGCTGTTGAGCAAA
gi|44338 : GAGACTTGGG-TATACTATTTTGAGCC--TTAACGTC--AT-ATAG-A-----CA---AT-AAACAGTG----GATAAAAG-----AAGCCAAACAAATGCCAAT----C----A------TT---GCCGAACGTGCTC----GAAGTGCCAAATTAGTAATACATTCAA-CATTCTTCGATTCCA-ATGTCCCTATCGTTCAAA
gi|44339 : TGGG-TGAACTATTTTGAGCC--CCAGCAGC--A--GTTATA-----TA---ACAAAAAAAT------GTAAAAA---TCATGCAAG------ATCAGT----T----A------TT---TCAAAATAAATCA-----AAGCACTAAAACAGTTTTGCATGCAA-CTTTCTTTAATTCCA-GTAGTACTGTGCTACAAA
gi|44340 : A---GCAAAGAAGACAA----GAAGC--TAAGAAGGCTTTATATGCCA-TTTTCTTCAATTCTA-ATGGTCCTATTGAACAAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|44331 ): AAAATTGATAAAAGCAATTTTTCAAACATTGTCACTGGCAACGAAACATGGATACACTTTTATGAATCATATTGGAAAGCTAGCAACCATGTATGGGCAACGAAAGGTCGGAAATGACCATGCATTGCCAAGAGGACAATCAGTGTTATAAAGGTTTTGTATGCCATTTTTTTCGCAATT