lowQualScore : 2 6666666 2 666666 6 2
lowQualScore : . ....... . ...... . .
lowQualScore : 1 8888888 1 111111 3 1
consensus : TTACTACGTCATT-TGTTTACAACG-------TCACC-GAAAACAGTGTAAACAGTA------G-TT-TAAAAA
Reference ( gi|114001 ) : TTACTACGTCATT-TGTTTACAACG-------TCACC-GAAAACAGTGTAAACAGTA------G-TT-TAAAAA
gi|113983 : TTACTACGTCATT-TGTTTACAACG-------TCACT-GAAAACAATGTAAACAGTA------G-TT-TTAAAA
gi|113984 : tgtaTTACTACATCATT-TGTTTACAACG-------TCACC-GAAAACAATGTAAGCAGTA------GTTT-TAAAAA
gi|113989 : tgtaTTACTTCATCATT-TGTTTACAACA-------TCACC-GAAAACAGTGTAAACAATA------G-TT-TTAAAA
gi|113988 : tataTTACTACGTCATT-TGTTTACAACG-------TCCCC-GAAAACAGTGAAAACAAAA------G-TT-TAGAA
gi|113985 : tgtaTTACTACGTCATT-TATTTAC---G-------TCACC-GAAAACAATGTAAACAGTA------GTTT-TAAAAA
gi|113986 : tgtaTTACTACGCGATG-TGCTTACAACG-------TCACC-GAAAACAATGTTAACAATA------G-TT-TAAAAA
gi|113987 : tgtaTTACTACATCATT-TATATACAACG-------TCATC-GAAAACAATGAAAACAGTA------GTTT-TAAAAA
gi|114000 : tgtaTTACAACGTAATT-TGCTTAAAACG-------TCACC-GACAACAGCGTAAACAGTA------G-TT-TAAA
gi|113992 : aTTACTACGTCATT-TGTTTAC---G-------TCACA-GAAAACATTGTAAACAGTA------G-TT-TTAAA
gi|113991 : tgtaTTGCTACGTCATT-TGTTAAAAACA-------CCACC-AAAACCAATGTAAACAGTA------G-TT-TAAAAA
gi|113993 : tgtaTTCCTACGTCTTT-TGTTTAAAACA-------TCACC-AAAAACAATGTAAGCAGTA------G-TTATAAAAA
gi|113995 : tgtaTTACT--GTCGTT-TGTTTACAA-G-------TCACC-AAAAAGAGTG-AAACAGTA------G-TT-TAAAAA
gi|113996 : tataTTACTACGTGATTATGTTTACAACC-------TCATG-GAAAACAGTGTTACCAGTA------G-TT-
gi|113999 : tgtaTTATTGCATCATT-TGTTCACAATGGCAAACACCACCTGAA--CAGTGTAAACAGTA------G-TT-TAAA
gi|113998 : tgttTTACTACGCCATT-TGTTTACAATG-------TCG---GTCAGTAATGTAAACAGTT------G-TT-
gi|113994 : tgtaTACTACGTCATT-TGTTTA-AACG-------TCGCC-GAAAACAGAGTAAACAGTA------G-TT-TAAA
gi|113990 : tgcaaTACTACGTCATT-TGTTAACAACG-------TCACC-GAAAACAATGTAAA---TA------T-TT-TAAAAA
gi|113997 : tgtacTGCTACGCCATG-TGTTTATAACG-------TCGCC-GAAAATAGTGTAAACATTAAAAAACA-TT-TAAAAA
gi|113982 : tgtaaACTACGTCATT-TGTTTACAACG-------TCACC-GAAAACAATGTAAACAGTA------G-TT-TAAAA
Alignments
lowQualScore : 2 6666666 2 555555 6 2
lowQualScore : . ....... . ...... . .
lowQualScore : 0 5555555 0 888888 0 0
consensus : TTACTACGTCATT-TGTTTACAACG-------TCACC-GAAAACAGTGTAAACAGTA------G-TT-TAAAAA
Reference ( family-806 ) : TTACTACGTCATT-TGTTTACAACG-------TCACC-GAAAACAGTGTAAACAGTA------G-TT-TAAAAA
gi|113982 : ACTACGTCATT-TGTTTACAACG-------TCACC-GAAAACAATGTAAACAGTA------G-TT-TAAAA
gi|113983 : tgtataTTACTACGTCATT-TGTTTACAACG-------TCACT-GAAAACAATGTAAACAGTA------G-TT-TTAAAA
gi|113984 : tgtaTTACTACATCATT-TGTTTACAACG-------TCACC-GAAAACAATGTAAGCAGTA------GTTT-TAAAAA
gi|113985 : tgtaTTACTACGTCATT-TATTTAC---G-------TCACC-GAAAACAATGTAAACAGTA------GTTT-TAAAAA
gi|113986 : tgtaTTACTACGCGATG-TGCTTACAACG-------TCACC-GAAAACAATGTTAACAATA------G-TT-TAAAAA
gi|113987 : tgtaTTACTACATCATT-TATATACAACG-------TCATC-GAAAACAATGAAAACAGTA------GTTT-TAAAAA
gi|113988 : tgtaTTACTACGTCATT-TGTTTACAACG-------TCCCC-GAAAACAGTGAAAACAAAA------G-TT-TAGAA
gi|113989 : tgtaTTACTTCATCATT-TGTTTACAACA-------TCACC-GAAAACAGTGTAAACAATA------G-TT-TTAAAA
gi|113990 : tataTACTACGTCATT-TGTTAACAACG-------TCACC-GAAAACAATGTAAA---TA------T-TT-TAAAAA
gi|113991 : tgtacTTGCTACGTCATT-TGTTAAAAACA-------CCACC-AAAACCAATGTAAACAGTA------G-TT-TAAAAA
gi|113992 : tgtaTTACTACGTCATT-TGTTTAC---G-------TCACA-GAAAACATTGTAAACAGTA------G-TT-TTAAA
gi|113993 : tgtaTTCCTACGTCTTT-TGTTTAAAACA-------TCACC-AAAAACAATGTAAGCAGTA------G-TTATAAAAA
gi|113994 : tgtaTACTACGTCATT-TGTTTA-AACG-------TCGCC-GAAAACAGAGTAAACAGTA------G-TT-TAAA
gi|113995 : tgcaaTTACT--GTCGTT-TGTTTACAA-G-------TCACC-AAAAAGAGTG-AAACAGTA------G-TT-TAAAAA
gi|113996 : tataTTACTACGTGATTATGTTTACAACC-------TCATG-GAAAACAGTGTTACCAGTA------G-TT-
gi|113997 : tgtaTGCTACGCCATG-TGTTTATAACG-------TCGCC-GAAAATAGTGTAAACATTAAAAAACA-TT-TAAAAA
gi|113998 : tgtaaTTACTACGCCATT-TGTTTACAATG-------TCG---GTCAGTAATGTAAACAGTT------G-TT-
gi|113999 : tgtaTTATTGCATCATT-TGTTCACAATGGCAAACACCACCTGAA--CAGTGTAAACAGTA------G-TT-TAAA
gi|114000 : tgttTTACAACGTAATT-TGCTTAAAACG-------TCACC-GACAACAGCGTAAACAGTA------G-TT-TAAA
gi|114001 : aTTACTACGTCATT-TGTTTACAACG-------TCACC-GAAAACAGTGTAAACAGTA------G-TT-TAAAAA
Alignments
lowQualScore : 2 6666666 2 555555 6 2
lowQualScore : . ....... . ...... . .
lowQualScore : 0 5555555 0 888888 0 0
consensus : TTACTACGTCATT-TGTTTACAACG-------TCACC-GAAAACAGTGTAAACAGTA------G-TT-TAAAAA
Reference ( family-806 ) : TTACTACGTCATT-TGTTTACAACG-------TCACC-GAAAACAGTGTAAACAGTA------G-TT-TAAAAA
gi|113982 : ACTACGTCATT-TGTTTACAACG-------TCACC-GAAAACAATGTAAACAGTA------G-TT-TAAAA
gi|113983 : tgtataTTACTACGTCATT-TGTTTACAACG-------TCACT-GAAAACAATGTAAACAGTA------G-TT-TTAAAA
gi|113984 : tgtaTTACTACATCATT-TGTTTACAACG-------TCACC-GAAAACAATGTAAGCAGTA------GTTT-TAAAAA
gi|113985 : tgtaTTACTACGTCATT-TATTTAC---G-------TCACC-GAAAACAATGTAAACAGTA------GTTT-TAAAAA
gi|113986 : tgtaTTACTACGCGATG-TGCTTACAACG-------TCACC-GAAAACAATGTTAACAATA------G-TT-TAAAAA
gi|113987 : tgtaTTACTACATCATT-TATATACAACG-------TCATC-GAAAACAATGAAAACAGTA------GTTT-TAAAAA
gi|113988 : tgtaTTACTACGTCATT-TGTTTACAACG-------TCCCC-GAAAACAGTGAAAACAAAA------G-TT-TAGAA
gi|113989 : tgtaTTACTTCATCATT-TGTTTACAACA-------TCACC-GAAAACAGTGTAAACAATA------G-TT-TTAAAA
gi|113990 : tataTACTACGTCATT-TGTTAACAACG-------TCACC-GAAAACAATGTAAA---TA------T-TT-TAAAAA
gi|113991 : tgtacTTGCTACGTCATT-TGTTAAAAACA-------CCACC-AAAACCAATGTAAACAGTA------G-TT-TAAAAA
gi|113992 : tgtaTTACTACGTCATT-TGTTTAC---G-------TCACA-GAAAACATTGTAAACAGTA------G-TT-TTAAA
gi|113993 : tgtaTTCCTACGTCTTT-TGTTTAAAACA-------TCACC-AAAAACAATGTAAGCAGTA------G-TTATAAAAA
gi|113994 : tgtaTACTACGTCATT-TGTTTA-AACG-------TCGCC-GAAAACAGAGTAAACAGTA------G-TT-TAAA
gi|113995 : tgcaaTTACT--GTCGTT-TGTTTACAA-G-------TCACC-AAAAAGAGTG-AAACAGTA------G-TT-TAAAAA
gi|113996 : tataTTACTACGTGATTATGTTTACAACC-------TCATG-GAAAACAGTGTTACCAGTA------G-TT-
gi|113997 : tgtaTGCTACGCCATG-TGTTTATAACG-------TCGCC-GAAAATAGTGTAAACATTAAAAAACA-TT-TAAAAA
gi|113998 : tgtaaTTACTACGCCATT-TGTTTACAATG-------TCG---GTCAGTAATGTAAACAGTT------G-TT-
gi|113999 : tgtaTTATTGCATCATT-TGTTCACAATGGCAAACACCACCTGAA--CAGTGTAAACAGTA------G-TT-TAAA
gi|114000 : tgttTTACAACGTAATT-TGCTTAAAACG-------TCACC-GACAACAGCGTAAACAGTA------G-TT-TAAA
gi|114001 : aTTACTACGTCATT-TGTTTACAACG-------TCACC-GAAAACAGTGTAAACAGTA------G-TT-TAAAAA
blockSeqs : A GCAAACA T AAAAAC T A
blockSeqs : . . . . T .
blockSeqs : . . . . T .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqCons :
originalCons : TTACTACGTCATT-TGTTTACAACG-------TCACC-GAAAACAGTGTAAACAGTA------G-TT-TAAAAA
finalCons : TTACTACGTCATT-TGTTTACAACG-------TCACC-GAAAACAGTGTAAACAGTA------G-TT-TAAAAA
Alignments
lowQualScore : 2 6666666 2 555555 6 2
lowQualScore : . ....... . ...... . .
lowQualScore : 0 5555555 0 888888 0 0
consensus : TTACTACGTCATT-TGTTTACAACG-------TCACC-GAAAACAGTGTAAACAGTA------G-TT-TAAAAA
Reference ( family-806 ) : TTACTACGTCATT-TGTTTACAACG-------TCACC-GAAAACAGTGTAAACAGTA------G-TT-TAAAAA
gi|113982 : ACTACGTCATT-TGTTTACAACG-------TCACC-GAAAACAATGTAAACAGTA------G-TT-TAAAA
gi|113983 : tgtataTTACTACGTCATT-TGTTTACAACG-------TCACT-GAAAACAATGTAAACAGTA------G-TT-TTAAAA
gi|113984 : tgtaTTACTACATCATT-TGTTTACAACG-------TCACC-GAAAACAATGTAAGCAGTA------GTTT-TAAAAA
gi|113985 : tgtaTTACTACGTCATT-TATTTAC---G-------TCACC-GAAAACAATGTAAACAGTA------GTTT-TAAAAA
gi|113986 : tgtaTTACTACGCGATG-TGCTTACAACG-------TCACC-GAAAACAATGTTAACAATA------G-TT-TAAAAA
gi|113987 : tgtaTTACTACATCATT-TATATACAACG-------TCATC-GAAAACAATGAAAACAGTA------GTTT-TAAAAA
gi|113988 : tgtaTTACTACGTCATT-TGTTTACAACG-------TCCCC-GAAAACAGTGAAAACAAAA------G-TT-TAGAA
gi|113989 : tgtaTTACTTCATCATT-TGTTTACAACA-------TCACC-GAAAACAGTGTAAACAATA------G-TT-TTAAAA
gi|113990 : tataTACTACGTCATT-TGTTAACAACG-------TCACC-GAAAACAATGTAAA---TA------T-TT-TAAAAA
gi|113991 : tgtacTTGCTACGTCATT-TGTTAAAAACA-------CCACC-AAAACCAATGTAAACAGTA------G-TT-TAAAAA
gi|113992 : tgtaTTACTACGTCATT-TGTTTAC---G-------TCACA-GAAAACATTGTAAACAGTA------G-TT-TTAAA
gi|113993 : tgtaTTCCTACGTCTTT-TGTTTAAAACA-------TCACC-AAAAACAATGTAAGCAGTA------G-TTATAAAAA
gi|113994 : tgtaTACTACGTCATT-TGTTTA-AACG-------TCGCC-GAAAACAGAGTAAACAGTA------G-TT-TAAA
gi|113995 : tgcaaTTACT--GTCGTT-TGTTTACAA-G-------TCACC-AAAAAGAGTG-AAACAGTA------G-TT-TAAAAA
gi|113996 : tataTTACTACGTGATTATGTTTACAACC-------TCATG-GAAAACAGTGTTACCAGTA------G-TT-
gi|113997 : tgtaTGCTACGCCATG-TGTTTATAACG-------TCGCC-GAAAATAGTGTAAACATTAAAAAACA-TT-TAAAAA
gi|113998 : tgtaaTTACTACGCCATT-TGTTTACAATG-------TCG---GTCAGTAATGTAAACAGTT------G-TT-
gi|113999 : tgtaTTATTGCATCATT-TGTTCACAATGGCAAACACCACCTGAA--CAGTGTAAACAGTA------G-TT-TAAA
gi|114000 : tgttTTACAACGTAATT-TGCTTAAAACG-------TCACC-GACAACAGCGTAAACAGTA------G-TT-TAAA
gi|114001 : aTTACTACGTCATT-TGTTTACAACG-------TCACC-GAAAACAGTGTAAACAGTA------G-TT-TAAAAA