lowQualScore : 6666666666666666666666 3333333333333333333333333333 111111
lowQualScore : 2 3 5555555555555555555555 5555555555555555555555555555 11 666666 11 0 11
lowQualScore : . . ...................... ............................ .. ...... .. . ..
lowQualScore : 0 0 7777777777777777777777 3333333333333333333333333333 33 888888 11 8 88
consensus : ATTAAGGATGNCAACGAAT------ATTCG-----------GATATTCGAATATTCGGTC-----AT----A----CGN----C----CGAAT--ATTCGAATGTC-A-TA--T-TGACATTCGAATATTCGCAAC
Reference ( gi|45570 ) : ACTAAGGATGTCAACGAAT------ATTCG-----------GATATTCGAATATTCGGTC-----AT----A----CGT----C----CGAAT--ATTCGAATGTC-A-TA--T-TGATATTCGAATATTCGCAAC
gi|45568 : ATTAAGGATGTCAACGAAT------ATTCG-----------GATATTCGAATATTCGGTC-----AT----A----CGT----C----CGAAT--ATTCGAATGTC-A-TA--T-TGATATTCGAATATTCGCAAC
gi|45567 : ATTAAGGATGTCAACGAAT------ATTCG-----------GATATTCGAATATTCGGTC-----AT----A----CGT----C----CGAAT--ATTCGAATGTC-A-TA--T-TGATATTCGAATATTCGCAAC
gi|45565 : ATTAAGGATGTCAACGAAT------ATTCG-----------GATATTCGAATATTCGGTC-----AT----A----CGT----C----CGAAT--ATTCGAATGTC-A-TA--T-TGATATTCGAATATTCGCAAC
gi|45569 : ACTAAGGATGGCAACGAATGGCAATATT-------------GATATTCGAATATTCGGTC-----AT----T----CTT----TCGAACGAAT--ATTCGAAT----A-TA--T-T
gi|45572 : ATTAAGGATGGCAACGAATGGCAATATT-------------GATATTCGAATATTCGGTC-----AT----T----CTT----TCGAACGAAT--ATTCGAAT----A-TA--T-T
gi|45571 : ATTAAGGATGGCAACGAATGGCAATATT-------------GATATTCGAATATTCGGTC-----AT----T----CTT----TCGAACGAAT--ATTCGAAT----A-TA--T-T
gi|45574 : ACTAAGGATGGCAACGAATGGCAATATT-------------GATTTTCGAATATTCGGTC-----AT----T----CTT----TCGAACGAAT--ATTCGAAT----A-TA--T-T
gi|45566 : ATTAAGGATGGCAACGAATGCCAATATT-------------GATATTCGAATATTCGGTC-----AT----T----CTT----T----CGAACGAATACGAAT----A-TA--T-T
gi|45579 : TAAGAATGTCAATGAAT------ATT---------------TA----AATATTCGGTC-----AT----A----CGT----C----CGAAT--ATTCAAATGTC-A-TT--T-TGATATTCAAAAATTTGC
gi|45578 : TAAGGATGGCAACGAATGGCAATATT-------------GATATTCGAATATTCGGTC-----AT----T----CTT----TTGAACGAAT--ATTCGAAT----A-TA--T-T
gi|45579 : GAATATCAA--AAT----------------------GACATTTGAATATTCGGAC-----GT----A----TGA----C----CGAAT--ATTTAAATATT---CA--T-TGACATTC
gi|45584 : taaGTCAACGTAT------GACCG-----------AATATTCGAAT-----GTC-----ATATTGA----TAT----T----CGAAT--ATTCGaaaaatttgc
gi|45568 : CGAAT------ATTCGAATATCAATATGACATTCGAATATTCGGAC-----GT----A----TGA----C----CGAAT--ATTCGAATATC----------------CGAATATTCGcaac
gi|45567 : attaaggatgtcaaCGAAT------ATTCGAATATCAATATGACATTCGAATATTCGGAC-----GT----A----TGA----C----CGAAT--ATTCGAATATC----------------CGAATATTCGcaac
gi|45565 : attaaggatgtcaaCGAAT------ATTCGAATATCAATATGACATTCGAATATTCGGAC-----GT----A----TGA----C----CGAAT--ATTCGAATATC----------------CGAATATTCGcaac
gi|45583 : attaaggatgtcaaCGAAT------ATTCG-----------GATATTCGAATATTCGGTC-----AT----A----CGT----C----CGAAT--ATTCGAATGTC-A-TA--T-TGATATTCGAATATTCGcaac
gi|45583 : CGAAT------ATTCGAATATCAATATGACATTCGAATATTCGGAC-----GT----A----TGA----C----CGAAT--ATTCGAATATC----------------CGAATATTCG
gi|45582 : CGAAT------ATTCG-----------GATATTCGAATATTCGGTC-----AT----A----CGT----C----CGAAT--ATTCGAATGTC-A-TA--T-TGATATTCGAATATTCG
gi|45582 : CGAAT------ATTCGAATATCAATATGACATTCGAATATTCGGAC-----GT----A----TGA----C----CGAAT--ATTCGAATATC----------------CGAATATTCG
gi|45581 : CGAAT------ATTCG-----------GATATTCGAATATTCGGTC-----AT----A----CGT----C----CGAAT--ATTCGAATGTC-A-TA--T-TGATATTCGAATATTCG
gi|45581 : CGAAT------ATTCGAATATCAATATGACATTCGAATATTCGGAC-----GT----A----TGA----C----CGAAT--ATTCGAATATC----------------CGAATATTCG
gi|45580 : CGAAT------ATTCG-----------GATATTCGAATATTCGGTC-----AT----A----CGT----C----CGAAT--ATTCGAATGTC-A-TA--T-TGATATTCGAATATTCG
gi|45580 : CGAAT------ATTCGAATATCAATATGACATTCGAATATTCGGAC-----GT----A----TGA----C----CGAAT--ATTCGAATATC----------------CGAATATTCG
gi|45584 : CGAAT------ATTCGAATATCAATATGACATTCGAATATTCGGTC-----AT----A----CGT----
gi|45575 : gtcaAAT------ATT-------------GATATTCGAATATTCGGTC-----AT----T----CTT----TTGAACGAAT--ATTCGAAT----A-TA--T-Tcaac
gi|45577 : ttaagatcttgaccgAAT------ATT-------------GATATTCGAATATTCGGTC-----AT----T----CTT----TCGAACGAAT--ATTCGAAT----A-TA--T-Tgccattcg
gi|45576 : ttaagatcttgaccgAAT------ATT-------------GATATTCGAATATTCGGTC-----AT----T----CTT----TCGAACGAAT--ATTCGAAT----A-TA--T-Tgccattcg
gi|45573 : ttaagattttgaccgAAT------ATT-------------GATATTCGAATATTCGGTC-----AT----T----CTT----TCGAACGAAT--ATTCGAAT----A-TA--T-Tgccattcg
gi|45584 : attaagatcttgaccgCG-----------AATATTCGAATA-TCAAT------ATG---A----CAT----T----CGAAT--ATTCG---GTC-A-TACGT-TGAgccattcg
gi|45569 : gATATTCGAATATTCGTTCGAAAGA-----A----TGA----C----CGAAT--ATTCGAATATCAA-TA--T-TGCCATTCGcaac
gi|45572 : actaaggatggcaaATATTCGAATATTCGTTCGAAAGA-----A----TGA----C----CGAAT--ATTCGAATATCAA-TA--T-TGCCATTCGatt
gi|45571 : attaaggatggcaaATATTCGAATATTCGTTCGAAAGA-----A----TGA----C----CGAAT--ATTCGAATATCAA-TA--T-TGCCATTCGatt
gi|45578 : attaaggatggcaaATATTCGAATATTCGTTC-----AA----AAGAATGA----C----CGAAT--ATTCGAATATCAA-TA--T-TGCCATTCGatt
gi|45574 : taaggatggcaaATATTCGAATATTCGTTCGAAAGA-----A----TGA----C----CGAAT--ATTCGAAAATCAA-TA--T-TGCCATTCGatt
gi|45566 : actaaggatggcaaATATTCG--TATTCGTTCGAAAGA-----A----TGA----C----CGAAT--ATTCGAATATCAA-TA--T-TGGCATTCGatt
gi|45575 : attaaggatggcaaATATTCGAATATTCGTTC-----AA----AAGAATGA----C----CGAAT--ATTCGAATATCAA-TA--T-TGCCATTCGatt
gi|45577 : ttaagatcttgaccgaatATATTCGAATATTCGTTCGAAAGA-----A----TGA----C----CGAAT--ATTCGAATATCAA-TA--T-TGCCATTCG
gi|45576 : ttaagatcttgaccgaatATATTCGAATATTCGTTCGAAAGA-----A----TGA----C----CGAAT--ATTCGAATATCAA-TA--T-TGCCATTCG
gi|45573 : ttaagattttgaccgaatATATTCGAATATTCGTTCGAAAGA-----A----TGA----C----CGAAT--ATTCGAATATCAA-TA--T-TGCCATTCG
gi|45584 : attaagatcttgaccgaatGTC-----A-----A----CGTATGAC----CGAAT--ATTCGAATGTC-A-TA--T-TGATATTCGAATATTCGCAAC
gi|45579 : ----CAAAT--TTTTGAATATC-A-AA--A-TGACATTTGAATATTCG
gi|45584 : taagaatgtcaatgaatatttaaatattcggtcatacgtc----CGAAT--ATTCGAATATC-A--A--TATGACATTCGAATATTCGc
gi|45569 : gtcaacgtatgacCGAATGGC-AATA--T-TGATATTCGAATATTCGcaac
gi|45572 : actaaggatggcaaCGAATGGC-AATA--T-TGATATTCGAATATTCGgtcattctttcgaacgaatattcgaatatatt
gi|45571 : attaaggatggcaaCGAATGGC-AATA--T-TGATATTCGAATATTCGgtcattctttcgaacgaatattcgaatatatt
gi|45574 : attaaggatggcaaCGAATGGC-AATA--T-TGATTTTCGAATATTCGgtcattctttcgaacgaatattcgaatatatt
gi|45566 : actaaggatggcaaCGAATGCC-AATA--T-TGATATTCGAATATTCGgtcattctttcgaacgaatattcgaatatatt
gi|45575 : attaaggatggcaaCGAATGGC-AATA--T-TGATATTCGAATATTCGgtcattctttcgaacgaatacgaatatatt
gi|45577 : ttaagatcttgaccgaatatattcgaatattcgttcaaaagaatgacCGAATGGC-AATA--T-TGATATTCGAATATTCG
gi|45576 : ttaagatcttgaccgaatatattcgaatattcgttcgaaagaatgacCGAATGGC-AATA--T-TGATATTCGAATATTCG
gi|45573 : ttaagattttgaccgaatatattcgaatattcgttcgaaagaatgacCGAATGGC-AATA--T-TGATATTCGAATATTCG
Alignments
lowQualScore : 333333 11 2222222222222222 1111
lowQualScore : 1 2 666666 00 2222222222222222 4444 1 22 1111 1
lowQualScore : . . ...... .. ................ .... . .. .... .
lowQualScore : 0 1 333333 33 2222222222222222 2222 0 88 9999 4
consensus : ATTAAGGATGNCAAC-GAAT------ATTCGGATATTCGAATATTCGGTC-----A----TA----C----GNCCGAAT--ATTCGAATGTC-ATATTGATATTCGAATATTCGCAAC
Reference ( family-805 ) : ATTAAGGATGNCAAC-GAAT------ATTCGGATATTCGAATATTCGGTC-----A----TA----C----GNCCGAAT--ATTCGAATGTC-ATATTGACATTCGAATATTCGCAAC
gi|45565 : ATTAAGGATGTCAAC-GAAT------ATTCGGATATTCGAATATTCGGTC-----A----TA----C----GTCCGAAT--ATTCGAATGTC-ATATTGATATTCGAATATTCGCAAC
gi|45566 : ATTAAGGATGGCAAC-GAATGCCAATATT--GATATTCGAATATTCGGTC-----A----TT----C----TTTCGAACGAATACGAAT----ATATT
gi|45567 : ATTAAGGATGTCAAC-GAAT------ATTCGGATATTCGAATATTCGGTC-----A----TA----C----GTCCGAAT--ATTCGAATGTC-ATATTGATATTCGAATATTCGCAAC
gi|45568 : ATTAAGGATGTCAAC-GAAT------ATTCGGATATTCGAATATTCGGTC-----A----TA----C----GTCCGAAT--ATTCGAATGTC-ATATTGATATTCGAATATTCGCAAC
gi|45569 : ACTAAGGATGGCAAC-GAATGGCAATATT--GATATTCGAATATTCGGTC-----ATTCTTT----C----GAACGAAT--ATTCGAAT----ATATT
gi|45570 : ACTAAGGATGTCAAC-GAAT------ATTCGGATATTCGAATATTCGGTC-----A----TA----C----GTCCGAAT--ATTCGAATGTC-ATATTGATATTCGAATATTCGCAAC
gi|45571 : ATTAAGGATGGCAAC-GAATGGCAATATT--GATATTCGAATATTCGGTC-----ATTCTTT----C----GAACGAAT--ATTCGAAT----ATATT
gi|45572 : ATTAAGGATGGCAAC-GAATGGCAATATT--GATATTCGAATATTCGGTC-----ATTCTTT----C----GAACGAAT--ATTCGAAT----ATATT
gi|45573 : ATTAAG-ATCTTGACCGAAT------AT------ATTCGAATATTCGTTCGAAAGA-----A----T----GACCGAAT--ATTCGAATATCAATATTGCCATTCG
gi|45574 : ACTAAGGATGGCAAC-GAATGGCAATATT--GATTTTCGAATATTCGGTC-----ATTCTTT----C----GAACGAAT--ATTCGAAT----ATATT
gi|45575 : AAC-GAAT------ATTCGAAT------ATATTCGGTC-----A----
gi|45575 : ttaagatctATATTCGAATATTCGTTC-----A----AAAGAAT----GACCGAAT--ATTCGAATATCAATATTGCCATTCGcaaaagaatgaccgaatattcgaatatcaatattgccattcg
gi|45576 : ttaagatcttgaccgaatAAC-GAAT------ATTCGAAT------ATATTCGGTC-----A----
gi|45576 : ttaagatttATATTCGAATATTCGTTCGAAAGA-----A----T----GACCGAAT--ATTCGAATATCAATATTGCCATTCGcgaaagaatgaccgaatattcgaatatcaatattgccattcg
gi|45577 : ttaagattttgaccgaatAAC-GAAT------ATTCGAAT------ATATTCGGTC-----A----
gi|45577 : ttaagatctATATTCGAATATTCGTTCGAAAGA-----A----T----GACCGAAT--ATTCGAATATCAATATTGCCATTCGcgaaagaatgaccgaatattcgaatatcaatattgccattcg
gi|45578 : ttaagatcttgaccgaatTAAGGATGGCAAC-GAATGGCAATATT--GATATTCGAATATTCGGTC-----A----TT----CTTTTGAACGAAT--ATTCGAAT----ATATT
gi|45579 : TAAGAATGTCAAT-GAAT------ATT----TA----AATATTCGGTC-----A----TA----C----GTCCGAAT--ATTCAAATGTC-ATTTTGATATTCAAAAATTTGC
gi|45580 : C-GAAT------ATTCGGATATTCGAATATTCGGTC-----A----TA----C----GTCCGAAT--ATTCGAATGTC-ATATTGATATTCGAATATTCG
gi|45581 : C-GAAT------ATTCGGATATTCGAATATTCGGTC-----A----TA----C----GTCCGAAT--ATTCGAATGTC-ATATTGATATTCGAATATTCG
gi|45582 : C-GAAT------ATTCGGATATTCGAATATTCGGTC-----A----TA----C----GTCCGAAT--ATTCGAATGTC-ATATTGATATTCGAATATTCG
gi|45583 : C-GAAT------ATTCGGATATTCGAATATTCGGTC-----A----TA----C----GTCCGAAT--ATTCGAATGTC-ATATTGATATTCGAATATTCG
gi|45584 : C-----G----TA----T----GACCGAAT--ATTCGAATGTC-ATATTGATATTCGAATATTCGCAAC
Alignments
lowQualScore : 333333 11 2222222222222222 1111
lowQualScore : 1 2 444444 22 4444444444444444 4444 1 22 4444
lowQualScore : . . ...... .. ................ .... . .. ....
lowQualScore : 0 0 555555 55 8888888888888888 0000 0 66 7777
consensus : ATTAAGGATGGCAAC-GAAT------ATTCGGATATTCGAATATTCGGTC-----A----TA----C----GNCCGAAT--ATTCGAATGTC-ATATTGATATTCGAATATTCGCAAC
Reference ( family-805 ) : ATTAAGGATGNCAAC-GAAT------ATTCGGATATTCGAATATTCGGTC-----A----TA----C----GNCCGAAT--ATTCGAATGTC-ATATTGATATTCGAATATTCGCAAC
gi|45565 : ATTAAGGATGTCAAC-GAAT------ATTCGGATATTCGAATATTCGGTC-----A----TA----C----GTCCGAAT--ATTCGAATGTC-ATATTGATATTCGAATATTCGCAAC
gi|45566 : ATTAAGGATGGCAAC-GAATGCCAATATT--GATATTCGAATATTCGGTC-----A----TT----C----TTTCGAACGAATACGAAT----ATATT
gi|45567 : ATTAAGGATGTCAAC-GAAT------ATTCGGATATTCGAATATTCGGTC-----A----TA----C----GTCCGAAT--ATTCGAATGTC-ATATTGATATTCGAATATTCGCAAC
gi|45568 : ATTAAGGATGTCAAC-GAAT------ATTCGGATATTCGAATATTCGGTC-----A----TA----C----GTCCGAAT--ATTCGAATGTC-ATATTGATATTCGAATATTCGCAAC
gi|45569 : ACTAAGGATGGCAAC-GAATGGCAATATT--GATATTCGAATATTCGGTC-----ATTCTTT----C----GAACGAAT--ATTCGAAT----ATATT
gi|45570 : ACTAAGGATGTCAAC-GAAT------ATTCGGATATTCGAATATTCGGTC-----A----TA----C----GTCCGAAT--ATTCGAATGTC-ATATTGATATTCGAATATTCGCAAC
gi|45571 : ATTAAGGATGGCAAC-GAATGGCAATATT--GATATTCGAATATTCGGTC-----ATTCTTT----C----GAACGAAT--ATTCGAAT----ATATT
gi|45572 : ATTAAGGATGGCAAC-GAATGGCAATATT--GATATTCGAATATTCGGTC-----ATTCTTT----C----GAACGAAT--ATTCGAAT----ATATT
gi|45573 : ATTAAG-ATCTTGACCGAAT------AT------ATTCGAATATTCGTTCGAAAGA-----A----T----GACCGAAT--ATTCGAATATCAATATTGCCATTCG
gi|45573 : GAATGGCAA-----T------ATT--GATATTCGAATATTCGGTC-----ATTCTTT----C----GAACGAAT--ATTCGAAT----ATATT
gi|45574 : attaagatcttgaccgACTAAGGATGGCAAC-GAATGGCAATATT--GATTTTCGAATATTCGGTC-----ATTCTTT----C----GAACGAAT--ATTCGAAT----ATATTg
gi|45575 : AAC-GAAT------ATTCGAAT------ATATTCGGTC-----A----
gi|45575 : ttaagatctATATTCGAATATTCGTTC-----A----AAAGAAT----GACCGAAT--ATTCGAATATCAATATTGCCATTCGcaaaagaatgaccgaatattcgaatatcaatattgccattcg
gi|45576 : ttaagatcttgaccgaatAAC-GAAT------ATTCGAAT------ATATTCGGTC-----A----
gi|45576 : ttaagatttATATTCGAATATTCGTTCGAAAGA-----A----T----GACCGAAT--ATTCGAATATCAATATTGCCATTCGcgaaagaatgaccgaatattcgaatatcaatattgccattcg
gi|45577 : ttaagattttgaccgaatAAC-GAAT------ATTCGAAT------ATATTCGGTC-----A----
gi|45577 : ttaagatctATATTCGAATATTCGTTCGAAAGA-----A----T----GACCGAAT--ATTCGAATATCAATATTGCCATTCGcgaaagaatgaccgaatattcgaatatcaatattgccattcg
gi|45578 : ttaagatcttgaccgaatTAAGGATGGCAAC-GAATGGCAATATT--GATATTCGAATATTCGGTC-----A----TT----CTTTTGAACGAAT--ATTCGAAT----ATATT
gi|45579 : TAAGAATGTCAAT-GAAT------ATT----TA----AATATTCGGTC-----A----TA----C----GTCCGAAT--ATTCAAATGTC-ATTTTGATATTCAAAAATTTGC
gi|45580 : C-GAAT------ATTCGGATATTCGAATATTCGGTC-----A----TA----C----GTCCGAAT--ATTCGAATGTC-ATATTGATATTCGAATATTCG
gi|45581 : C-GAAT------ATTCGGATATTCGAATATTCGGTC-----A----TA----C----GTCCGAAT--ATTCGAATGTC-ATATTGATATTCGAATATTCG
gi|45582 : C-GAAT------ATTCGGATATTCGAATATTCGGTC-----A----TA----C----GTCCGAAT--ATTCGAATGTC-ATATTGATATTCGAATATTCG
gi|45583 : C-GAAT------ATTCGGATATTCGAATATTCGGTC-----A----TA----C----GTCCGAAT--ATTCGAATGTC-ATATTGATATTCGAATATTCG
gi|45584 : C-----G----TA----T----GACCGAAT--ATTCGAATGTC-ATATTGATATTCGAATATTCGCAAC
Alignments
lowQualScore : 333333 11 2222 1111
lowQualScore : 111111 44 0 4444 66666 4444 11 22 8888
lowQualScore : ...... .. . .... ..... .... .. .. ....
lowQualScore : 444444 11 6 8888 99999 2222 88 88 4444
consensus : ATTAAGGATGGCAACGAAT------ATTCGGATATTCGAATATTCGGTCA----TN----C----GNCCGAAT--ATTCGAATGTC-ATATTGATATTCGAATATTCGCAAC
Reference ( family-805 ) : ATTAAGGATGGCAACGAAT------ATTCGGATATTCGAATATTCGGTCA----TA----C----GNCCGAAT--ATTCGAATGTC-ATATTGATATTCGAATATTCGCAAC
gi|45565 : ATTAAGGATGTCAACGAAT------ATTCGGATATTCGAATATTCGGTCA----TA----C----GTCCGAAT--ATTCGAATGTC-ATATTGATATTCGAATATTCGCAAC
gi|45566 : ATTAAGGATGGCAACGAATGCCAATATT--GATATTCGAATATTCGGTCA----TT----C----TTTCGAACGAATACGAAT----ATATT
gi|45567 : ATTAAGGATGTCAACGAAT------ATTCGGATATTCGAATATTCGGTCA----TA----C----GTCCGAAT--ATTCGAATGTC-ATATTGATATTCGAATATTCGCAAC
gi|45568 : ATTAAGGATGTCAACGAAT------ATTCGGATATTCGAATATTCGGTCA----TA----C----GTCCGAAT--ATTCGAATGTC-ATATTGATATTCGAATATTCGCAAC
gi|45569 : ACTAAGGATGGCAACGAATGGCAATATT--GATATTCGAATATTCGGTCATTCTTT----C----GAACGAAT--ATTCGAAT----ATATT
gi|45570 : ACTAAGGATGTCAACGAAT------ATTCGGATATTCGAATATTCGGTCA----TA----C----GTCCGAAT--ATTCGAATGTC-ATATTGATATTCGAATATTCGCAAC
gi|45571 : ATTAAGGATGGCAACGAATGGCAATATT--GATATTCGAATATTCGGTCATTCTTT----C----GAACGAAT--ATTCGAAT----ATATT
gi|45572 : ATTAAGGATGGCAACGAATGGCAATATT--GATATTCGAATATTCGGTCATTCTTT----C----GAACGAAT--ATTCGAAT----ATATT
gi|45573 : AACGAAT------ATTCGAATAT------ATTCGGTCA----
gi|45573 : attaagatctGAATGGCAA----T------ATT--GATATTCGAATATTCGGTCATTCTTT----C----GAACGAAT--ATTCGAAT----ATATTcgaaagaatgaccgaatattcgaatatcaatattgccattcg
gi|45574 : attaagatcttgaccgACTAAGGATGGCAACGAATGGCAATATT--GATTTTCGAATATTCGGTCATTCTTT----C----GAACGAAT--ATTCGAAT----ATATTg
gi|45575 : AACGAAT------ATTCGAATAT------ATTCGGTCA----
gi|45575 : ttaagatctATATTCGAATATTCGTTCA----AAAGAAT----GACCGAAT--ATTCGAATATCAATATTGCCATTCGcaaaagaatgaccgaatattcgaatatcaatattgccattcg
gi|45576 : ttaagatcttgaccgaatAACGAAT------ATTCGAATAT------ATTCGGTCA----
gi|45576 : ttaagatttGAATGGCAA----T------ATT--GATATTCGAATATTCGGTCATTCTTT----C----GAACGAAT--ATTCGAAT----ATATTcgaaagaatgaccgaatattcgaatatcaatattgccattcg
gi|45577 : ttaagattttgaccgAACGAAT------ATTCGAATAT------ATTCGGTCA----g
gi|45577 : ttaagatctGAATGGCAA----T------ATT--GATATTCGAATATTCGGTCATTCTTT----C----GAACGAAT--ATTCGAAT----ATATTcgaaagaatgaccgaatattcgaatatcaatattgccattcg
gi|45578 : ttaagatcttgaccgTAAGGATGGCAACGAATGGCAATATT--GATATTCGAATATTCGGTCA----TT----CTTTTGAACGAAT--ATTCGAAT----ATATTg
gi|45579 : TAAGAATGTCAATGAAT------ATT----TA----AATATTCGGTCA----TA----C----GTCCGAAT--ATTCAAATGTC-ATTTTGATATTCAAAAATTTGC
gi|45580 : CGAAT------ATTCGGATATTCGAATATTCGGTCA----TA----C----GTCCGAAT--ATTCGAATGTC-ATATTGATATTCGAATATTCG
gi|45581 : CGAAT------ATTCGGATATTCGAATATTCGGTCA----TA----C----GTCCGAAT--ATTCGAATGTC-ATATTGATATTCGAATATTCG
gi|45582 : CGAAT------ATTCGGATATTCGAATATTCGGTCA----TA----C----GTCCGAAT--ATTCGAATGTC-ATATTGATATTCGAATATTCG
gi|45583 : CGAAT------ATTCGGATATTCGAATATTCGGTCA----TA----C----GTCCGAAT--ATTCGAATGTC-ATATTGATATTCGAATATTCG
gi|45584 : CG----TA----T----GACCGAAT--ATTCGAATGTC-ATATTGATATTCGAATATTCGCAAC
Alignments
lowQualScore : 333333 11 2222 222
lowQualScore : 000000 55 0 4444 1 8888 33 22 000
lowQualScore : ...... .. . .... . .... .. .. ...
lowQualScore : 000000 99 6 8888 0 5555 11 88 555
consensus : ATTAAGGATGGCAACGAAT------ATTCGGATATTCGAATATTCGGTCA----TNC----GNCCGAAT--ATTCGAATGTCATATTGATATTCGAATATTCGCAAC
Reference ( family-805 ) : ATTAAGGATGGCAACGAAT------ATTCGGATATTCGAATATTCGGTCA----TNC----GNCCGAAT--ATTCGAATGTCATATTGATATTCGAATATTCGCAAC
gi|45565 : ATTAAGGATGTCAACGAAT------ATTCGGATATTCGAATATTCGGTCA----TAC----GTCCGAAT--ATTCGAATGTCATATTGATATTCGAATATTCGCAAC
gi|45566 : ATTAAGGATGGCAACGAATGCCAATATT--GATATTCGAATATTCGGTCA----TTC----TTTCGAACGAATACGAAT---ATATT
gi|45567 : ATTAAGGATGTCAACGAAT------ATTCGGATATTCGAATATTCGGTCA----TAC----GTCCGAAT--ATTCGAATGTCATATTGATATTCGAATATTCGCAAC
gi|45568 : ATTAAGGATGTCAACGAAT------ATTCGGATATTCGAATATTCGGTCA----TAC----GTCCGAAT--ATTCGAATGTCATATTGATATTCGAATATTCGCAAC
gi|45569 : ACTAAGGATGGCAACGAATGGCAATATT--GATATTCGAATATTCGGTCATTCTTTC----GAACGAAT--ATTCGAAT---ATATT
gi|45570 : ACTAAGGATGTCAACGAAT------ATTCGGATATTCGAATATTCGGTCA----TAC----GTCCGAAT--ATTCGAATGTCATATTGATATTCGAATATTCGCAAC
gi|45571 : ATTAAGGATGGCAACGAATGGCAATATT--GATATTCGAATATTCGGTCATTCTTTC----GAACGAAT--ATTCGAAT---ATATT
gi|45572 : ATTAAGGATGGCAACGAATGGCAATATT--GATATTCGAATATTCGGTCATTCTTTC----GAACGAAT--ATTCGAAT---ATATT
gi|45573 : AACGAAT------ATTCGAATAT------ATTCGGTCA----
gi|45573 : attaagatctGAATGGCAA----T------ATT--GATATTCGAATATTCGGTCATTCTTTC----GAACGAAT--ATTCGAAT---ATATTcgaaagaatgaccgaatattcgaatatcaatattgccattcg
gi|45574 : attaagatcttgaccgACTAAGGATGGCAACGAATGGCAATATT--GATTTTCGAATATTCGGTCATTCTTTC----GAACGAAT--ATTCGAAT---ATATTg
gi|45575 : AACGAAT------ATTCGAATAT------ATTCGGTCA----
gi|45575 : ttaagatctGAATGGCAA----T------ATT--GATATTCGAATATTCGGTCA----TTCTTTTGAACGAAT--ATTCGAAT---ATATTcaaaagaatgaccgaatattcgaatatcaatattgccattcg
gi|45576 : ttaagatcttgaccgAACGAAT------ATTCGAATAT------ATTCGGTCA----g
gi|45576 : ttaagatttGAATGGCAA----T------ATT--GATATTCGAATATTCGGTCATTCTTTC----GAACGAAT--ATTCGAAT---ATATTcgaaagaatgaccgaatattcgaatatcaatattgccattcg
gi|45577 : ttaagattttgaccgAACGAAT------ATTCGAATAT------ATTCGGTCA----g
gi|45577 : ttaagatctGAATGGCAA----T------ATT--GATATTCGAATATTCGGTCATTCTTTC----GAACGAAT--ATTCGAAT---ATATTcgaaagaatgaccgaatattcgaatatcaatattgccattcg
gi|45578 : ttaagatcttgaccgTAAGGATGGCAACGAATGGCAATATT--GATATTCGAATATTCGGTCA----TTCTTTTGAACGAAT--ATTCGAAT---ATATTg
gi|45579 : TAAGAATGTCAATGAAT------ATT----TA----AATATTCGGTCA----TAC----GTCCGAAT--ATTCAAATGTCATTTTGATATTCAAAAATTTGC
gi|45580 : CGAAT------ATTCGGATATTCGAATATTCGGTCA----TAC----GTCCGAAT--ATTCGAATGTCATATTGATATTCGAATATTCG
gi|45581 : CGAAT------ATTCGGATATTCGAATATTCGGTCA----TAC----GTCCGAAT--ATTCGAATGTCATATTGATATTCGAATATTCG
gi|45582 : CGAAT------ATTCGGATATTCGAATATTCGGTCA----TAC----GTCCGAAT--ATTCGAATGTCATATTGATATTCGAATATTCG
gi|45583 : CGAAT------ATTCGGATATTCGAATATTCGGTCA----TAC----GTCCGAAT--ATTCGAATGTCATATTGATATTCGAATATTCG
gi|45584 : CG----TAT----GACCGAAT--ATTCGAATGTCATATTGATATTCGAATATTCGCAAC
Alignments
lowQualScore : 333333 11 2222 222
lowQualScore : 000000 55 0 4444 1 8888 33 22 000
lowQualScore : ...... .. . .... . .... .. .. ...
lowQualScore : 000000 99 6 8888 0 5555 11 88 555
consensus : ATTAAGGATGGCAACGAAT------ATTCGGATATTCGAATATTCGGTCA----TNC----GNCCGAAT--ATTCGAATGTCATATTGATATTCGAATATTCGCAAC
Reference ( family-805 ) : ATTAAGGATGGCAACGAAT------ATTCGGATATTCGAATATTCGGTCA----TNC----GNCCGAAT--ATTCGAATGTCATATTGATATTCGAATATTCGCAAC
gi|45565 : ATTAAGGATGTCAACGAAT------ATTCGGATATTCGAATATTCGGTCA----TAC----GTCCGAAT--ATTCGAATGTCATATTGATATTCGAATATTCGCAAC
gi|45566 : ATTAAGGATGGCAACGAATGCCAATATT--GATATTCGAATATTCGGTCA----TTC----TTTCGAACGAATACGAAT---ATATT
gi|45567 : ATTAAGGATGTCAACGAAT------ATTCGGATATTCGAATATTCGGTCA----TAC----GTCCGAAT--ATTCGAATGTCATATTGATATTCGAATATTCGCAAC
gi|45568 : ATTAAGGATGTCAACGAAT------ATTCGGATATTCGAATATTCGGTCA----TAC----GTCCGAAT--ATTCGAATGTCATATTGATATTCGAATATTCGCAAC
gi|45569 : ACTAAGGATGGCAACGAATGGCAATATT--GATATTCGAATATTCGGTCATTCTTTC----GAACGAAT--ATTCGAAT---ATATT
gi|45570 : ACTAAGGATGTCAACGAAT------ATTCGGATATTCGAATATTCGGTCA----TAC----GTCCGAAT--ATTCGAATGTCATATTGATATTCGAATATTCGCAAC
gi|45571 : ATTAAGGATGGCAACGAATGGCAATATT--GATATTCGAATATTCGGTCATTCTTTC----GAACGAAT--ATTCGAAT---ATATT
gi|45572 : ATTAAGGATGGCAACGAATGGCAATATT--GATATTCGAATATTCGGTCATTCTTTC----GAACGAAT--ATTCGAAT---ATATT
gi|45573 : AACGAAT------ATTCGAATAT------ATTCGGTCA----
gi|45573 : attaagatctGAATGGCAA----T------ATT--GATATTCGAATATTCGGTCATTCTTTC----GAACGAAT--ATTCGAAT---ATATTcgaaagaatgaccgaatattcgaatatcaatattgccattcg
gi|45574 : attaagatcttgaccgACTAAGGATGGCAACGAATGGCAATATT--GATTTTCGAATATTCGGTCATTCTTTC----GAACGAAT--ATTCGAAT---ATATTg
gi|45575 : AACGAAT------ATTCGAATAT------ATTCGGTCA----
gi|45575 : ttaagatctGAATGGCAA----T------ATT--GATATTCGAATATTCGGTCA----TTCTTTTGAACGAAT--ATTCGAAT---ATATTcaaaagaatgaccgaatattcgaatatcaatattgccattcg
gi|45576 : ttaagatcttgaccgAACGAAT------ATTCGAATAT------ATTCGGTCA----g
gi|45576 : ttaagatttGAATGGCAA----T------ATT--GATATTCGAATATTCGGTCATTCTTTC----GAACGAAT--ATTCGAAT---ATATTcgaaagaatgaccgaatattcgaatatcaatattgccattcg
gi|45577 : ttaagattttgaccgAACGAAT------ATTCGAATAT------ATTCGGTCA----g
gi|45577 : ttaagatctGAATGGCAA----T------ATT--GATATTCGAATATTCGGTCATTCTTTC----GAACGAAT--ATTCGAAT---ATATTcgaaagaatgaccgaatattcgaatatcaatattgccattcg
gi|45578 : ttaagatcttgaccgTAAGGATGGCAACGAATGGCAATATT--GATATTCGAATATTCGGTCA----TTCTTTTGAACGAAT--ATTCGAAT---ATATTg
gi|45579 : TAAGAATGTCAATGAAT------ATT----TA----AATATTCGGTCA----TAC----GTCCGAAT--ATTCAAATGTCATTTTGATATTCAAAAATTTGC
gi|45580 : CGAAT------ATTCGGATATTCGAATATTCGGTCA----TAC----GTCCGAAT--ATTCGAATGTCATATTGATATTCGAATATTCG
gi|45581 : CGAAT------ATTCGGATATTCGAATATTCGGTCA----TAC----GTCCGAAT--ATTCGAATGTCATATTGATATTCGAATATTCG
gi|45582 : CGAAT------ATTCGGATATTCGAATATTCGGTCA----TAC----GTCCGAAT--ATTCGAATGTCATATTGATATTCGAATATTCG
gi|45583 : CGAAT------ATTCGGATATTCGAATATTCGGTCA----TAC----GTCCGAAT--ATTCGAATGTCATATTGATATTCGAATATTCG
gi|45584 : CG----TAT----GACCGAAT--ATTCGAATGTCATATTGATATTCGAATATTCGCAAC
blockSeqs : GCCAAT CG TTCT T TTTT TT GA GTC
blockSeqs : GGCAAT CG TTCT A TTTT TC . GTC
blockSeqs : GGCAAT CG TTCT A . TC . GTC
blockSeqs : GGCAAT CG TTCT T . AA . GTC
blockSeqs : GGCAAT CG TTCT A . TC . GTC
blockSeqs : GGCAAT CG TTCT T . AA . GTC
blockSeqs : . CG TTCT T . AA . GTC
blockSeqs : . CG . T . AA . GTC
blockSeqs : . CG . T . AA . GTC
blockSeqs : . CG . T . AA . .
blockSeqs : . CG . T . AA . .
blockSeqs : . . . T . AA . .
blockSeqs : . . . T . AA . .
blockSeqs : . . . A . TC . .
blockSeqs : . . . A . TC . .
blockSeqs : . . . A . TC . .
blockSeqs : . . . A . TC . .
blockSeqs : . . . A . TC . .
blockSeqs : . . . A . AC . .
blockSeqs : . . .
blockSeqs : . . .
blockSeqs : . . .
blockSeqs : .
blockSeqCons : CG ***
originalCons : ATTAAGGATGGCAACGAAT------ATTCGGATATTCGAATATTCGGTCA----TNC----GNCCGAAT--ATTCGAATGTCATATTGATATTCGAATATTCGCAAC
finalCons : ATTAAGGATGGCAACGAAT------ATTCGGATATTCGAATATTCGGTCA----TNC----GNCCGAAT--ATTCGAAT---ATATTGATATTCGAATATTCGCAAC
Alignments
lowQualScore : 333333 11 2222 333
lowQualScore : 000000 55 0 4444 1 8888 33 22 555
lowQualScore : ...... .. . .... . .... .. .. ...
lowQualScore : 000000 99 6 8888 0 5555 11 88 000
consensus : ATTAAGGATGGCAACGAAT------ATTCGGATATTCGAATATTCGGTCA----TNC----GNCCGAAT--ATTCGAATGTCATATTGATATTCGAATATTCGCAAC
Reference ( family-805 ) : ATTAAGGATGGCAACGAAT------ATTCGGATATTCGAATATTCGGTCA----TNC----GNCCGAAT--ATTCGAAT---ATATTGATATTCGAATATTCGCAAC
gi|45565 : ATTAAGGATGTCAACGAAT------ATTCGGATATTCGAATATTCGGTCA----TAC----GTCCGAAT--ATTCGAATGTCATATTGATATTCGAATATTCGCAAC
gi|45566 : ATTAAGGATGGCAACGAATGCCAATATT--GATATTCGAATATTCGGTCA----TTC----TTTCGAACGAATACGAAT---ATATT
gi|45567 : ATTAAGGATGTCAACGAAT------ATTCGGATATTCGAATATTCGGTCA----TAC----GTCCGAAT--ATTCGAATGTCATATTGATATTCGAATATTCGCAAC
gi|45568 : ATTAAGGATGTCAACGAAT------ATTCGGATATTCGAATATTCGGTCA----TAC----GTCCGAAT--ATTCGAATGTCATATTGATATTCGAATATTCGCAAC
gi|45569 : ACTAAGGATGGCAACGAATGGCAATATT--GATATTCGAATATTCGGTCATTCTTTC----GAACGAAT--ATTCGAAT---ATATT
gi|45570 : ACTAAGGATGTCAACGAAT------ATTCGGATATTCGAATATTCGGTCA----TAC----GTCCGAAT--ATTCGAATGTCATATTGATATTCGAATATTCGCAAC
gi|45571 : ATTAAGGATGGCAACGAATGGCAATATT--GATATTCGAATATTCGGTCATTCTTTC----GAACGAAT--ATTCGAAT---ATATT
gi|45572 : ATTAAGGATGGCAACGAATGGCAATATT--GATATTCGAATATTCGGTCATTCTTTC----GAACGAAT--ATTCGAAT---ATATT
gi|45573 : AACGAAT------ATTCGAATAT------ATTCGGTCA----
gi|45573 : attaagatctGAATGGCAA----T------ATT--GATATTCGAATATTCGGTCATTCTTTC----GAACGAAT--ATTCGAAT---ATATTcgaaagaatgaccgaatattcgaatatcaatattgccattcg
gi|45574 : attaagatcttgaccgACTAAGGATGGCAACGAATGGCAATATT--GATTTTCGAATATTCGGTCATTCTTTC----GAACGAAT--ATTCGAAT---ATATTg
gi|45575 : AACGAAT------ATTCGAATAT------ATTCGGTCA----
gi|45575 : ttaagatctGAATGGCAA----T------ATT--GATATTCGAATATTCGGTCA----TTCTTTTGAACGAAT--ATTCGAAT---ATATTcaaaagaatgaccgaatattcgaatatcaatattgccattcg
gi|45576 : ttaagatcttgaccgAACGAAT------ATTCGAATAT------ATTCGGTCA----g
gi|45576 : ttaagatttGAATGGCAA----T------ATT--GATATTCGAATATTCGGTCATTCTTTC----GAACGAAT--ATTCGAAT---ATATTcgaaagaatgaccgaatattcgaatatcaatattgccattcg
gi|45577 : ttaagattttgaccgAACGAAT------ATTCGAATAT------ATTCGGTCA----g
gi|45577 : ttaagatctGAATGGCAA----T------ATT--GATATTCGAATATTCGGTCATTCTTTC----GAACGAAT--ATTCGAAT---ATATTcgaaagaatgaccgaatattcgaatatcaatattgccattcg
gi|45578 : ttaagatcttgaccgTAAGGATGGCAACGAATGGCAATATT--GATATTCGAATATTCGGTCA----TTCTTTTGAACGAAT--ATTCGAAT---ATATTg
gi|45579 : TAAGAATGTCAATGAAT------ATT----TA----AATATTCGGTCA----TAC----GTCCGAAT--ATTCAAATGTCATTTTGATATTCAAAAATTTGC
gi|45580 : CGAAT------ATTCGGATATTCGAATATTCGGTCA----TAC----GTCCGAAT--ATTCGAATGTCATATTGATATTCGAATATTCG
gi|45581 : CGAAT------ATTCGGATATTCGAATATTCGGTCA----TAC----GTCCGAAT--ATTCGAATGTCATATTGATATTCGAATATTCG
gi|45582 : CGAAT------ATTCGGATATTCGAATATTCGGTCA----TAC----GTCCGAAT--ATTCGAATGTCATATTGATATTCGAATATTCG
gi|45583 : CGAAT------ATTCGGATATTCGAATATTCGGTCA----TAC----GTCCGAAT--ATTCGAATGTCATATTGATATTCGAATATTCG
gi|45584 : CG----TAT----GACCGAAT--ATTCGAATGTCATATTGATATTCGAATATTCGCAAC