lowQualScore : 1 3333333333333 1111111 11 11 11111 444444444444444444444444444444444444444444444444444444444444444444444444 11 111111111 66666666666 1111111111111111111111
lowQualScore : 6 2 1 55 1111111111111 3 6666666 2 00 22 0 3 00000 5 999999999999999999999999999999999999999999999999999999999999999999999999 33 33 0 2 66 444444444 888 333 77 44 2 2 5555 444 2 2 2 11111111111 9999999999999999999999 44 7777
lowQualScore : . . . .. ............. . ....... . .. .. . . ..... . ........................................................................ .. .. . . .. ......... ... ... .. .. . . .... ... . . . ........... ...................... .. ....
lowQualScore : 0 6 8 00 8888888888888 6 6666666 0 00 33 5 3 99999 7 222222222222222222222222222222222222222222222222222222222222222222222222 88 99 1 7 99 000000000 888 666 11 33 5 4 0000 444 5 5 5 88888888888 1111111111111111111111 66 7777
consensus : ATTATTACTATAACATATCAATATNACCTAAATGTAG--TTTTTTGC-----A------AA-A-A--C--TATGATTTTCTT--TTA--TTTAAGAGAGCTTTGAATGA-ATTACAGAC----GTTTCGTACCA-------------C-------------CAA---------ATT-------GAG--------------------GTTTCGTACC-ACACAT--AGGTTAATGCATAAACTTTACAGTGTTTCA-CACCATGATTAGGTGTCACAATC--ATANNC-TT---ACG---GTATTTGT--TTN-TAATT-AGTGT-GTG----ATAGTAT---TGGATTG-T-T-ATTATTTGGGGTTG-AA-CGT---AAC-----T-----------A----AAATAC--ATT----TTATTTTGTTTATACATTTATT
Reference ( gi|94096 ) : ATTGTAACTATAACATATCAATATAACCTAAATGTAG--TTTTTTGT-----A------AA-A-A--C--TATGATTTTCTT--TTA--TTTAAGAGAGCTTTGAATGA-ATTACAGAC----GTTTCATACCA-------------C-------------CAA---------ACT-------GAG--------------------GTTTCGTACA-ACACAT--AGGTTAATGCATAAACTTTACAGTGTTTCA-CACCATGATTAGGTGTCACAATC--ATAATC-TT---ACG---GTATTTGT--TTT-TGATT-AGTGT-GTG----ATAGTAT---TGGATTG-T-T-ATTATTTGGGGTTG-A--------AAC-----T-----------A----AAATAC--ATT----TTATTTTGTTTATACATTTATT
gi|94098 : ATTATGACTATAACATATCAATATAACCTAAATGTAG--TTTTTTGC-----ACAAAAAAACA-A--C--AATGATTTTCTT--TTA--TTTAAGAGAGCTTTGAATGA-ATTACAGAC----GTTTCGTACAC-------------C-------------CAA---------ACT-------GAG--------------------GTTTCGTACA-ACCCAT--AGGTCAATGCATAAACTTT--AGTGTTTCA-CACTATGATTAGGTGTCACAATC--ATAAAC-TT---ACG---GTATTTGT--TTT-TAATT-AGTGT-CTG----ATAGTAT---TGGATTG-T-T-ATTATTTAGGGTTT-AAACGT---AAC-----T-----------A----AAATAC--ATT----TTATTTTGTTTATACATTTATT
gi|94094 : ATTATGACTATAACATATCAATATTATCTAAATGTAG--TTTTTTGC-----A------AA-AAA--C--TATGATTTTCTT--TTA--TTTAAGAGAGCTTTGAATGA-ATTACAGAT----GTTTCGTACCA-------------C-------------CAA---------ATT-------GAG--------------------GTTTCGTACC-ACACAT--ATGTTAATGCATAAACTTTACAGTGTTTCA-CACCATGATTAGGTGTCACAATC--ATTTAC-TT---ACG---GTATTTG----TT-TG--T-AGTGT-GTGATCAATAGTAT---TGGATTG-T-T-ATTATTTGGGGTTGTAACGT----AAC-----T-----------A----AAATAC--ATT----TTATTTTGTTTATACATTTATT
gi|94095 : ATTATGATTATAACATATCAATGTAATCTAAATGTAG---TTTTTGCA----A------AA-A-A--C--TATGATTTTCTT--TTA--TTTAAGAGAGCTTTGAATGA-ATTACAGAC----GTTTCGTGCCA-------------C-------------CAA---------ATT-------GAG--------------------GTTTCGTACC-ACACAT--ATGTTAATGCATAAACTTTACAGTGTTTCA-CACCATGATTAGGTGTCACAATC--ATTTAC-TT---ACA---GTATTTG----TT-TG--T-AGTGT-GTG----AAAGTAT---TGGATTG-T-T-ATTATTTGGGGTTG-AAACGT---AAC-----T-----------A----AAATAC--ATT----TTATTTTGTTTATACATTTATT
gi|94099 : ATTATTACTATAACATATCTCAATAACCTAAATATAT--TTTTTTGC-----A------AA-A-AATC--TATGATTTTCTT--TTA--TTTAAGAGAGCTTTGAATGA-ATTACAGAA----GTTTCTTACCA-------------C-------------CAG---------ATTT------GAG--------------------GTTTCGTACC-ACACAT--AGGTTAATGCATAAACTTTACAGTGTTTTA-CACCATGATAAAGTGTCACAATC--ATAAAC-TT---ACG---GTATTTGT--TTT-TAATT-AGTGT-GTG----ATAGTAT---TGGATTG-T-T-TTTATTTGGGGTTG-AAACGT---AAC-----T-----------A----AAATAC--GTT----TTATTTTTTTTATACATTTATT
gi|94100 : ATTATTACTAAAACATATCACTGTAACATAAATATAG--TCTTTTGC-----A------AA-A-A--AAATATAGTTTTCTT--TTA--TTTAAGAGAGCTTTGAATGA-ATTACAGACCGGCGTTTCGTACCA-------------C-------------CAA---------ATT-------GAG--------------------GTTTCGTATGTACACAT--AGGTCAATGCATAAACTTTACAGTGTTTCA-CACCATGATTAGGTGTCACAATC--ATAAAC-TT---ACG---GTATTTGT--TTT-TAATT-AGTGT-GTG----ATAGTAT---TGGATGG-A-T-ATTATTTGGGGTTG-A--------AACG----T-----------AACTTAAATAC--ATT----TTATTTTGTTTATACATTTATT
gi|94097 : ATTATGACTATAACATATCAATATAATCTAAATGTAG--TTTTTAGC-----A------AA-AAA--C--TATGATTTTCTT--TTA--TTTAAGAGAGCTTTGAATGC-ATTACAGAC----GTTTCGTACCA-------------C-------------CAA---------ATT-------AAG--------------------GTTTCGTACC-ACACAT--ATGTTAATGCATAAACTTTACAGTATTTCA-TACCATGATTAGGTGTCACAATC--ATTTAC-TT---ACG---GTATTTG----TT-TG--C-AGTGT-GTG----ATAGTAT---TGGATTG-T-T-GTTATTTGGGGTTGTAACGT----AAC-----T-----------A----AAATG----------TTATTTTGTTTATACATTTATT
gi|94101 : ATTATTACTATAACATATCAATATGACCTAAATGTAG--TTTTC---------------------------A-GGTTTT-TT--TTG--C--AAAAAATCTTTGAATGA-ATTACAGAG----GTTTCATACCA-------------C-------------CAA---------ATT-------GAGAGGTTTTGTCAATTTGAGAGGTTTCGTACA-ATACAT--AGATTAATGCATAAACTTTATAGTGTTTCA-CCCCATGATTAGGTGTGACACTT--ATA--C-T-----------TATTTGT--TTG-TAATT-AGTGT-GTG----ATAGTAG---TGAATTG-T-T-ATTATTT-GGTTTT-A--------AAG-----T-----------G----AA------ATT----TTATTTTGTTTATATAT
gi|94103 : ATTATTGCTATAA-ACATTAATATTACCTAAATGTAT--TTTTTTTTTTGCCA------AA-A-C--C--TATGATTTTTTTTCTTAT-TTTAAGAGTGCTTTAAATG
gi|94102 : ATTATTGCTATAA-ACATTAATATTACCTAAATGTAT--TTTTTTTTTTGCCA------AA-A-C--C--TATGATTTTTTTTCTTAT-TTTAAGAGTGCTTTAAATG
gi|94104 : ATTATTGCTATAACAT--TAATATTACCTAAATGGTG--TTTTTTTT-----AC-----AA-A-A--CC-TATGATTTT-TT--CTAATTTTAAGAGTGCTTTAAATG
gi|94105 : TAAAACATATCAATATAACCTAAATGTAGGTTTTTTTGC-----A------AA-AAA--C--TATGATTTTCTT--TTA--TTTAAGAGTGCTTTGAATTA-ATTACAGAC----GTTTCGTACCA-------------C-------------CAA---------ACT-------GAG--------------------GTTTCGTACA-ACACAA--AGGTTAATGCATTAACTTTACAGTGTTTCA-CACCATGATTAGGTGTCACAATC--ATAAAC-TT---ACG---GTATTTGT--TTT-TAATT-AGTGT-GTG----ATAGTAT---TGGATTG-T-T-ATTATTTGGGGTTG-AAACGT---AAC-----T-----------A----AAATAC--ATT----TTATTTTGTTTATACATTTATT
gi|94107 : gaaTTGATTGGTATTACAG------GTTTCGTACCATTAAAATTTTGCAC-------------AAA---------ATT-------GAG--------------------GTTTCTTATC-ACACAT--AGATTCATGCATAATCTATATAGTATTTCA-AACTATGATAAGGAGTCACAATC--ATACTC-TTATGATG---GTATTTGT--TTG-TAATT-AGTGT-GTG----AGAG-------AGATGGTT-T-ATTATTT
gi|94106 : AATGA-ATTACAGAG----GTTTCGTACCA-------------CTACAATCTTATACCAA---------ATT-------GAGAC------------------GTTTCGTATC-ACACAT--AGATTAATGCATAAACTATATAGTATTTCA-CACCATGGTTAGGTGTCACAATC--ATATTC-TTATGATG---ATATTTGT--TTG-TAATT-AGTGT-GTG----ATAGTAT---TGGTTTA-T-C-ACTGT
gi|94109 : tagtatttgagagaaaactattttcagtaatgttgatcttgatcca-ATTACAGAG----GTTTCGTACCA-------------CTACAATTTTGTACCAA---------ATT-------GAGAG------------------GTTTTGTACC-ACACAT--TGATAAATGCATAAACTATATAGTATTTTAACACCATGATAAGGTGACGCAATT--ATATTC-TT---ATGATGGTATTTGT--TTG-TAATT-ATTGT-GTG----ATAGTAT---TGGTTTA-T-TAATTATT
gi|94110 : -ATTACAGAA----AATTCGTACCA-------------CTT-----------CAATTTCGTACCACT-------ACC--------------------ATTTCGTAC---CAAATTGAGATTAATGCATAAACTATATTGTATTTCA-CACCATGATTAGGTGTCACAGTC--ATATTT-TTATGATG---GTATTAGT--TT----ATT-ACCGTAATG----AT
gi|94108 : TTTCGTACCA-----------------------------G---------ACTTTGTCCAGAA--------------------TTTTTGTACC-TCACAT--AGATCAATGCTTGAACTTCATAGTGATTCA-CGCCATGATCAGATGTAACAATCAAATAATTATG---ATG---GTATTTGT--TTG-TAACT-ACTG------------GTAG---TGGATTA-T-T-ATTATTTGTGGTT--A--------AAC-----T-----------G----TAATAC--Acaaacaatgtgtatttggatcacgagtattt
gi|94111 : cactacaaCATAT--AGATTAATGCATGAGCTGGATAATGTTTCA-CACCATGATTTGGTGTCACACTCAAATAATTATG---ATG---GGAATTGTAATTTACTATTAAGTGT-GTG----ATAGTAC---TGGATTA-T-T-TTTATTTGAGGTTT-AACTGTATTAAC-----T-----------A----TAAGAC--A-------TATACTGGTCATACagacatacttttatccattatat
gi|94112 : TCA-CACTATTATCAGGTGTGACAACC--ATATTC-TT---ATGATGGTATTTGT--TTG-TAATT-CATGT-GTG----ATAGTAT---TGGTTTA-T-T-ATCAT
gi|94113 : --ATAATCATG---ACG---CTGGTTGT--TTG-TAATT-AGTAT-GTG----ATAGCAT---TGGATTA-T-T-ATTATTTGGGGTT--A--------AAC-----TTACAGGTCTCCA----ATATACCAATTGTTGTCATTTTATTT-TACAT
gi|94114 : GTGC-GTG----TTTGTATACTTTGTTCG-TAT-ATTATTTGGGGTTG-A--------AACGTAACT-----------A----AAATAC--ATT----TTATTTTGTTTTTACATTTATT
Alignments
lowQualScore : 1111111 1111 11 555555555555555555555555555 111111111 22222222222222222222222 222 1
lowQualScore : 2 44 2 5555555 44 6 3 999999 3 3333 44 1 99 11 3 99999 111111111111111111111111111 111111111 2 44444444444444444444444 2 2 88 000 444 444 444 11 2 5555 444 2 2 2 3 8 3 77777 3 77777 3 44 0 6666 4
lowQualScore : . .. . ....... .. . . ...... . .... .. . .. .. . ..... ........................... ......... . ....................... . . .. ... ... ... ... .. . .... ... . . . . . . ..... . ..... . .. . .... .
lowQualScore : 1 66 2 0000000 66 7 3 666666 3 6666 66 0 22 22 1 33333 444444444444444444444444444 444444444 9 00000000000000000000000 9 5 22 666 111 111 111 55 5 0000 111 4 4 4 1 5 1 33333 1 77777 1 22 4 5555 0
consensus : ATTATNACTATAACATATC--AATATNACCTAAATGTA----G--TTTTTT--G-C-A------AA-A-A--C--TATGATTTTCTT--TTA--TTTAAGAGAGCTTTGAATGA-ATTACAGAC----GTTTCGTACCA-------------C-------------CAA---------ATT-GA--------------------G--GTTTCGTAC-CACACATAGGTTAATGCATAAACTTTACAGTGTTTC-ACACCATGATTAGGTGTCACAATCATATACTT---ACG---GT---ATTTG---TTTGTAATT-AGTGTGTG----ATAGTAT---TGGATTG-T-T-ATTATTTGGGG-TTG-AA-C-G---TA-A-----CTAAAAT-AC--ATT----TTATTTTGTTTATACATT-TATT
Reference ( family-796 ) : ATTATTACTATAACATATC--AATATNACCTAAATGTA----G--TTTTTT--G-C-A------AA-A-A--C--TATGATTTTCTT--TTA--TTTAAGAGAGCTTTGAATGA-ATTACAGAC----GTTTCGTACCA-------------C-------------CAA---------ATT-GA--------------------G--GTTTCGTAC-CACACATAGGTTAATGCATAAACTTTACAGTGTTTC-ACACCATGATTAGGTGTCACAATCATANNCTT---ACG---GT---ATTTG---TTTNTAATT-AGTGTGTG----ATAGTAT---TGGATTG-T-T-ATTATTTGGGG-TTG-AA-C-G---TA-A-----CTAAAAT-AC--ATT----TTATTTTGTTTATACATT-TATT
gi|94094 : ATTATGACTATAACATATC--AATATTATCTAAATGTA----G--TTTTTT--G-C-A------AA-AAA--C--TATGATTTTCTT--TTA--TTTAAGAGAGCTTTGAATGA-ATTACAGAT----GTTTCGTACCA-------------C-------------CAA---------ATT-GA--------------------G--GTTTCGTAC-CACACATATGTTAATGCATAAACTTTACAGTGTTTC-ACACCATGATTAGGTGTCACAATCATTTACTT---ACG---GT---ATTTG---TTTG----T-AGTGTGTGATCAATAGTAT---TGGATTG-T-T-ATTATTTGGGG-TTGTAA-C-G---TA-A-----CTAAAAT-AC--ATT----TTATTTTGTTTATACATT-TATT
gi|94095 : ATTATGATTATAACATATC--AATGTAATCTAAATGTA----G---TTTTT--G-CAA------AA-A-A--C--TATGATTTTCTT--TTA--TTTAAGAGAGCTTTGAATGA-ATTACAGAC----GTTTCGTGCCA-------------C-------------CAA---------ATT-GA--------------------G--GTTTCGTAC-CACACATATGTTAATGCATAAACTTTACAGTGTTTC-ACACCATGATTAGGTGTCACAATCATTTACTT---ACA---GT---ATTTG---TTTG----T-AGTGTGTG----AAAGTAT---TGGATTG-T-T-ATTATTTGGGG-TTGAAA-C-G---TA-A-----CTAAAAT-AC--ATT----TTATTTTGTTTATACATT-TATT
gi|94096 : ATTGTAACTATAACATATC--AATATAACCTAAATGTA----G--TTTTTT--G-T-A------AA-A-A--C--TATGATTTTCTT--TTA--TTTAAGAGAGCTTTGAATGA-ATTACAGAC----GTTTCATACCA-------------C-------------CAA---------ACT-GA--------------------G--GTTTCGTAC-AACACATAGGTTAATGCATAAACTTTACAGTGTTTC-ACACCATGATTAGGTGTCACAATCATAATCTT---ACG---GT---ATTTG---TTTTTGATT-AGTGTGTG----ATAGTAT---TGGATTG-T-T-ATTATTTGGGG-TTG-A---------A-A-----CTAAAAT-AC--ATT----TTATTTTGTTTATACATT-TATT
gi|94097 : ATTATGACTATAACATATC--AATATAATCTAAATGTA----G--TTTTTA--G-C-A------AA-AAA--C--TATGATTTTCTT--TTA--TTTAAGAGAGCTTTGAATGC-ATTACAGAC----GTTTCGTACCA-------------C-------------CAA---------ATT-AA--------------------G--GTTTCGTAC-CACACATATGTTAATGCATAAACTTTACAGTATTTC-ATACCATGATTAGGTGTCACAATCATTTACTT---ACG---GT---ATTTG---TTTG----C-AGTGTGTG----ATAGTAT---TGGATTG-T-T-GTTATTTGGGG-TTGTAA-C-G---TA-A-----CTAAAAT-G----------TTATTTTGTTTATACATT-TATT
gi|94098 : ATTATGACTATAACATATC--AATATAACCTAAATGTA----G--TTTTTT--G-C-ACAAAAAAACA-A--C--AATGATTTTCTT--TTA--TTTAAGAGAGCTTTGAATGA-ATTACAGAC----GTTTCGTACAC-------------C-------------CAA---------ACT-GA--------------------G--GTTTCGTAC-AACCCATAGGTCAATGCATAAACTTT--AGTGTTTC-ACACTATGATTAGGTGTCACAATCATAAACTT---ACG---GT---ATTTG---TTTTTAATT-AGTGTCTG----ATAGTAT---TGGATTG-T-T-ATTATTTAGGGTTTA-AA-C-G---TA-A-----CTAAAAT-AC--ATT----TTATTTTGTTTATACATT-TATT
gi|94099 : ATTATTACTATAACATATCTCAATA--ACCTAAATATA----T--TTTTTT--G-C-A------AA-A-AATC--TATGATTTTCTT--TTA--TTTAAGAGAGCTTTGAATGA-ATTACAGAA----GTTTCTTACCA-------------C-------------CAG---------ATTTGA--------------------G--GTTTCGTAC-CACACATAGGTTAATGCATAAACTTTACAGTGTTTT-ACACCATGATAAAGTGTCACAATCATAAACTT---ACG---GT---ATTTG---TTTTTAATT-AGTGTGTG----ATAGTAT---TGGATTG-T-T-TTTATTTGGGG-TTGAAA-C-G---TA-A-----CTAAAAT-AC--GTT----TTATTTTTTTTATACATT-TATT
gi|94100 : ATTATTACTAAAACATATC--ACTGTAACATAAATATA----G--TCTTTT--G-C-A------AA-A-A--AAATATAGTTTTCTT--TTA--TTTAAGAGAGCTTTGAATGA-ATTACAGACCGGCGTTTCGTACCA-------------C-------------CAA---------ATT-GA--------------------G--GTTTCGTATGTACACATAGGTCAATGCATAAACTTTACAGTGTTTC-ACACCATGATTAGGTGTCACAATCATAAACTT---ACG---GT---ATTTG---TTTTTAATT-AGTGTGTG----ATAGTAT---TGGATGG-A-T-ATTATTTGGGG-TTGAAA-C-G---TA-A-----CTTAAAT-AC--ATT----TTATTTTGTTTATACATT-TATT
gi|94101 : ATTATTACTATAACATATC--AATATGACCTAAATGTA----G--TTTT------C-A--------------------GGTTTT-TT--TTG--C--AAAAAATCTTTGAATGA-ATTACAGAG----GTTTCATACCA-------------C-------------CAA---------ATT-GAGAGGTTTTGTCAATTTGAGAG--GTTTCGTAC-AATACATAGATTAATGCATAAACTTTATAGTGTTTC-ACCCCATGATTAGGTGTGACACTTATA--CT-----------T---ATTTG---TTTGTAATT-AGTGTGTG----ATAGTAG---TGAATTG-T-T-ATTATTT--GG-TT--------------------TTAAAGTGAA--ATT----TTATTTTGTTTATATAT
gi|94102 : ATTATTGCTATAA-ACATT--AATATTACCTAAATGTATTTTT--TTTTTT--GCC-A------AA-A-C--C--TATGATTTTTTTTCTTAT-TTTAAGAGTGCTTTAAATG
gi|94103 : ATTATTGCTATAA-ACATT--AATATTACCTAAATGTATTTTT--TTTTTT--GCC-A------AA-A-C--C--TATGATTTTTTTTCTTAT-TTTAAGAGTGCTTTAAATG
gi|94104 : ATTATTGCTATAACAT--T--AATATTACCTAAATGGT----G--TTTTTTTTA-C-A------AA-A-C--C--TATGATTTT-TT--CTAATTTTAAGAGTGCTTTAAATG
gi|94105 : TAAAACATATC--AATATAACCTAAATGTA----GGTTTTTTT--G-C-A------AA-AAA--C--TATGATTTTCTT--TTA--TTTAAGAGTGCTTTGAATTA-ATTACAGAC----GTTTCGTACCA-------------C-------------CAA---------ACT-GA--------------------G--GTTTCGTAC-AACACAAAGGTTAATGCATTAACTTTACAGTGTTTC-ACACCATGATTAGGTGTCACAATCATAAACTT---ACG---GT---ATTTG---TTTTTAATT-AGTGTGTG----ATAGTAT---TGGATTG-T-T-ATTATTTGGGG-TTGAAA-C-G---TA-A-----CTAAAAT-AC--ATT----TTATTTTGTTTATACATT-TATT
gi|94106 : gaaAATGA-ATTACAGAG----GTTTCGTACCA-------------CTACAATCTTATACCAA---------ATT-GA--------------------GACGTTTCGTAT-CACACATAGATTAATGCATAAACTATATAGTATTTC-ACACCATGGTTAGGTGTCACAATCATATTCTTATGATG---AT---ATTTG---TTTGTAATT-AGTGTGTG----ATAGTAT---TGGTTTA-T-C-ACTGT
gi|94107 : tagtatttgagagaaaactattttcagtaatgttgatcttgatccaTTGATTGGTATTACAG------GTTTCGTACCATTAAAATTTTGCAC-------------AAA---------ATT-GA--------------------G--GTTTCTTAT-CACACATAGATTCATGCATAATCTATATAGTATTTC-AAACTATGATAAGGAGTCACAATCATACTCTTATGATG---GT---ATTTG---TTTGTAATT-AGTGTGTG----AGAG-------AGATGGTT-T-ATTATTT
gi|94108 : TTTCGTACCAGACTTTGT-----C-------------CA--------------GA--------------------A--TTTTTGTAC-CTCACATAGATCAATGCTTGAACTTCATAGTGATTC-ACGCCATGATCAGATGTAACAATCAAATAATTATGATG---GT---ATTTG---TTTGTAACT-ACTG-----------GTAG---TGGATTA-T-T-ATTATTTGTGG-TTA-AA-CTG---TA-A------TACAAG-AC--A-------TACT---TTTATCCATTATAT
gi|94109 : cactacaa-ATTACAGAG----GTTTCGTACCA-------------CTACAATTTTGTACCAA---------ATT-GA--------------------GAGGTTTTGTAC-CACACATTGATAAATGCATAAACTATATAGTATTTTAACACCATGATAAGGTGACGCAATTATATTCTTATGATG---GT---ATTTG---TTTGTAATT-ATTGTGTG----ATAGTAT---TGGTTTA-T-TAATTATT
gi|94110 : -ATTACAGAA----AATTCGTACCA-------------CTT-----------CAATTTCGTACCACT-AC--------------------C--ATTTCGTAC-CAAATTGAGATTAATGCATAAACTATATTGTATTTC-ACACCATGATTAGGTGTCACAGTCATATTTTTATGATG---GT---ATTAG---TTTAT
gi|94111 : CATATAGATTAATGCATGAGCTGGATAATGTTTC-ACACCATGATTTGGTGTCACACTCAAATAATT---ATG---ATGGGAATTGTAATTTACTATTAAGTGTGTG----ATAGTAC---TGGATTA-T-T-TTTATTTGAGG-TTT-AA-CTGTATTA-A-----CTATAAG-AC--A-------TATACTGGTCATACtaccgtaatgatcaaacaatgtgtatttggatcacgagtattt
gi|94112 : TC-ACACTATTATCAGGTGTGACAACCATATTCTT---ATGATGGT---ATTTG---TTTGTAATT-CATGTGTG----ATAGTAT---TGGTTTA-T-T-ATCAT
gi|94113 : ATAATCATG--------ACG---CT---GGTTG---TTTGTAATT-AGTATGTG----ATAGCAT---TGGATTA-T-T-ATTATTTGGGG-TTA-AA-C-T---TACAGGTCTCCAATAT-ACCAATTGTTGTCATTTTATTT-TACAT
gi|94114 : GTGCGTG----TTTGTATACTTTGTTCG-TAT-ATTATTTGGGG-TTG-AAAC-G---TA-A-----CTAAAAT-AC--ATT----TTATTTTGTTTTTACATT-TATT
Alignments
lowQualScore : 1111111 1111 11 555555555555555555555555555 111111111 22222222222222222222222 111 1
lowQualScore : 1 44 2 5555555 44 6 3 999999 3 3333 44 1 99 11 3 99999 111111111111111111111111111 111111111 2 44444444444444444444444 2 2 44 666 888 444 444 33 2 2 4444 444 2 2 2 3 8 3 77777 3 77777 3 44 0 6666 4
lowQualScore : . .. . ....... .. . . ...... . .... .. . .. .. . ..... ........................... ......... . ....................... . . .. ... ... ... ... .. . . .... ... . . . . . . ..... . ..... . .. . .... .
lowQualScore : 0 66 2 0000000 66 7 3 666666 3 6666 66 0 22 22 1 33333 444444444444444444444444444 444444444 9 00000000000000000000000 9 5 00 555 222 111 111 22 4 2 7777 111 4 4 4 1 5 1 33333 1 77777 1 22 4 5555 0
consensus : ATTATNACTATAACATATC--AATATNACCTAAATGTA----G--TTTTTT--G-C-A------AA-A-A--C--TATGATTTTCTT--TTA--TTTAAGAGAGCTTTGAATGA-ATTACAGAC----GTTTCGTACCA-------------C-------------CAA---------ATT-GA--------------------G--GTTTCGTAC-CACACATAGGTTAATGCATAAACTTTACAGTGTTTCA-CACCATGATTAGGTGTCACAATCATATACTT---ACG---GT---ATTTG---TTTGTAATT-AGTGT-GTG----ATAGTAT---TGGATTG-T-T-ATTATTTGGGG-TTG-AA-C-G---TA-A-----CTAAAAT-AC--ATT----TTATTTTGTTTATACATT-TATT
Reference ( family-796 ) : ATTATNACTATAACATATC--AATATNACCTAAATGTA----G--TTTTTT--G-C-A------AA-A-A--C--TATGATTTTCTT--TTA--TTTAAGAGAGCTTTGAATGA-ATTACAGAC----GTTTCGTACCA-------------C-------------CAA---------ATT-GA--------------------G--GTTTCGTAC-CACACATAGGTTAATGCATAAACTTTACAGTGTTTCA-CACCATGATTAGGTGTCACAATCATATACTT---ACG---GT---ATTTG---TTTGTAATT-AGTGT-GTG----ATAGTAT---TGGATTG-T-T-ATTATTTGGGG-TTG-AA-C-G---TA-A-----CTAAAAT-AC--ATT----TTATTTTGTTTATACATT-TATT
gi|94094 : ATTATGACTATAACATATC--AATATTATCTAAATGTA----G--TTTTTT--G-C-A------AA-AAA--C--TATGATTTTCTT--TTA--TTTAAGAGAGCTTTGAATGA-ATTACAGAT----GTTTCGTACCA-------------C-------------CAA---------ATT-GA--------------------G--GTTTCGTAC-CACACATATGTTAATGCATAAACTTTACAGTGTTTCA-CACCATGATTAGGTGTCACAATCATTTACTT---ACG---GT---ATTTG---TTTG----T-AGTGT-GTGATCAATAGTAT---TGGATTG-T-T-ATTATTTGGGG-TTGTAA-C-G---TA-A-----CTAAAAT-AC--ATT----TTATTTTGTTTATACATT-TATT
gi|94095 : ATTATGATTATAACATATC--AATGTAATCTAAATGTA----G---TTTTT--G-CAA------AA-A-A--C--TATGATTTTCTT--TTA--TTTAAGAGAGCTTTGAATGA-ATTACAGAC----GTTTCGTGCCA-------------C-------------CAA---------ATT-GA--------------------G--GTTTCGTAC-CACACATATGTTAATGCATAAACTTTACAGTGTTTCA-CACCATGATTAGGTGTCACAATCATTTACTT---ACA---GT---ATTTG---TTTG----T-AGTGT-GTG----AAAGTAT---TGGATTG-T-T-ATTATTTGGGG-TTGAAA-C-G---TA-A-----CTAAAAT-AC--ATT----TTATTTTGTTTATACATT-TATT
gi|94096 : ATTGTAACTATAACATATC--AATATAACCTAAATGTA----G--TTTTTT--G-T-A------AA-A-A--C--TATGATTTTCTT--TTA--TTTAAGAGAGCTTTGAATGA-ATTACAGAC----GTTTCATACCA-------------C-------------CAA---------ACT-GA--------------------G--GTTTCGTAC-AACACATAGGTTAATGCATAAACTTTACAGTGTTTCA-CACCATGATTAGGTGTCACAATCATAATCTT---ACG---GT---ATTTG---TTTTTGATT-AGTGT-GTG----ATAGTAT---TGGATTG-T-T-ATTATTTGGGG-TTG-A---------A-A-----CTAAAAT-AC--ATT----TTATTTTGTTTATACATT-TATT
gi|94097 : ATTATGACTATAACATATC--AATATAATCTAAATGTA----G--TTTTTA--G-C-A------AA-AAA--C--TATGATTTTCTT--TTA--TTTAAGAGAGCTTTGAATGC-ATTACAGAC----GTTTCGTACCA-------------C-------------CAA---------ATT-AA--------------------G--GTTTCGTAC-CACACATATGTTAATGCATAAACTTTACAGTATTTCA-TACCATGATTAGGTGTCACAATCATTTACTT---ACG---GT---ATTTG---TTTG----C-AGTGT-GTG----ATAGTAT---TGGATTG-T-T-GTTATTTGGGG-TTGTAA-C-G---TA-A-----CTAAAAT-G----------TTATTTTGTTTATACATT-TATT
gi|94098 : ATTATGACTATAACATATC--AATATAACCTAAATGTA----G--TTTTTT--G-C-ACAAAAAAACA-A--C--AATGATTTTCTT--TTA--TTTAAGAGAGCTTTGAATGA-ATTACAGAC----GTTTCGTACAC-------------C-------------CAA---------ACT-GA--------------------G--GTTTCGTAC-AACCCATAGGTCAATGCATAAACTTT--AGTGTTTCA-CACTATGATTAGGTGTCACAATCATAAACTT---ACG---GT---ATTTG---TTTTTAATT-AGTGT-CTG----ATAGTAT---TGGATTG-T-T-ATTATTTAGGGTTTA-AA-C-G---TA-A-----CTAAAAT-AC--ATT----TTATTTTGTTTATACATT-TATT
gi|94099 : ATTATTACTATAACATATCTCAATA--ACCTAAATATA----T--TTTTTT--G-C-A------AA-A-AATC--TATGATTTTCTT--TTA--TTTAAGAGAGCTTTGAATGA-ATTACAGAA----GTTTCTTACCA-------------C-------------CAG---------ATTTGA--------------------G--GTTTCGTAC-CACACATAGGTTAATGCATAAACTTTACAGTGTTTTA-CACCATGATAAAGTGTCACAATCATAAACTT---ACG---GT---ATTTG---TTTTTAATT-AGTGT-GTG----ATAGTAT---TGGATTG-T-T-TTTATTTGGGG-TTGAAA-C-G---TA-A-----CTAAAAT-AC--GTT----TTATTTTTTTTATACATT-TATT
gi|94100 : ATTATTACTAAAACATATC--ACTGTAACATAAATATA----G--TCTTTT--G-C-A------AA-A-A--AAATATAGTTTTCTT--TTA--TTTAAGAGAGCTTTGAATGA-ATTACAGACCGGCGTTTCGTACCA-------------C-------------CAA---------ATT-GA--------------------G--GTTTCGTATGTACACATAGGTCAATGCATAAACTTTACAGTGTTTCA-CACCATGATTAGGTGTCACAATCATAAACTT---ACG---GT---ATTTG---TTTTTAATT-AGTGT-GTG----ATAGTAT---TGGATGG-A-T-ATTATTTGGGG-TTGAAA-C-G---TA-A-----CTTAAAT-AC--ATT----TTATTTTGTTTATACATT-TATT
gi|94101 : ATTATTACTATAACATATC--AATATGACCTAAATGTA----G--TTTT------C-A--------------------GGTTTT-TT--TTG--C--AAAAAATCTTTGAATGA-ATTACAGAG----GTTTCATACCA-------------C-------------CAA---------ATT-GAGAGGTTTTGTCAATTTGAGAG--GTTTCGTAC-AATACATAGATTAATGCATAAACTTTATAGTGTTTCA-CCCCATGATTAGGTGTGACACT--TATACT-----------T---ATTTG---TTTGTAATT-AGTGT-GTG----ATAGTAG---TGAATTG-T-T-ATTATTT--GG-TT--------------------TTAAAGTGAA--ATT----TTATTTTGTTTATATAT
gi|94102 : ATTATTGCTATAA-ACATT--AATATTACCTAAATGTATTTTT--TTTTTT--GCC-A------AA-A-C--C--TATGATTTTTTTTCTTAT-TTTAAGAGTGCTTTAAATG
gi|94103 : ATTATTGCTATAA-ACATT--AATATTACCTAAATGTATTTTT--TTTTTT--GCC-A------AA-A-C--C--TATGATTTTTTTTCTTAT-TTTAAGAGTGCTTTAAATG
gi|94104 : ATTATTGCTATAACAT--T--AATATTACCTAAATGGT----G--TTTTTTTTA-C-A------AA-A-C--C--TATGATTTT-TT--CTAATTTTAAGAGTGCTTTAAATG
gi|94105 : TAAAACATATC--AATATAACCTAAATGTA----GGTTTTTTT--G-C-A------AA-AAA--C--TATGATTTTCTT--TTA--TTTAAGAGTGCTTTGAATTA-ATTACAGAC----GTTTCGTACCA-------------C-------------CAA---------ACT-GA--------------------G--GTTTCGTAC-AACACAAAGGTTAATGCATTAACTTTACAGTGTTTCA-CACCATGATTAGGTGTCACAATCATAAACTT---ACG---GT---ATTTG---TTTTTAATT-AGTGT-GTG----ATAGTAT---TGGATTG-T-T-ATTATTTGGGG-TTGAAA-C-G---TA-A-----CTAAAAT-AC--ATT----TTATTTTGTTTATACATT-TATT
gi|94106 : gaaAATGA-ATTACAGAG----GTTTCGTACCA-------------CTACAATCTTATACCAA---------ATT-GA--------------------GACGTTTCGTAT-CACACATAGATTAATGCATAAACTATATAGTATTTCA-CACCATGGTTAGGTGTCACAATCATATTCTTATGATG---AT---ATTTG---TTTGTAATT-AGTGT-GTG----ATAGTAT---TGGTTTA-T-C-ACTGT
gi|94107 : tagtatttgagagaaaactattttcagtaatgttgatcttgatccaTTGATTGGTATTACAG------GTTTCGTACCATTAAAATTTTGCAC-------------AAA---------ATT-GA--------------------G--GTTTCTTAT-CACACATAGATTCATGCATAATCTATATAGTATTTCA-AACTATGATAAGGAGTCACAATCATACTCTTATGATG---GT---ATTTG---TTTGTAATT-AGTGT-GTG----AGAG-------AGATGGTT-T-ATTATTT
gi|94108 : TTTCGTACCAGACTTTGT-----C-------------CA--------------GA--------------------A--TTTTTGTAC-CTCACATAGATCAATGCTTGAACTTCATAGTGATTCA-CGCCATGATCAGATGTAACAATCAAATAATTATGATG---GT---ATTTG---TTTGTAACT-ACTG------------GTAG---TGGATTA-T-T-ATTATTTGTGG-TTA-AA-CTG---TA-A------TACAAG-AC--A-------TACT---TTTATCCATTATAT
gi|94109 : cactacaa-ATTACAGAG----GTTTCGTACCA-------------CTACAATTTTGTACCAA---------ATT-GA--------------------GAGGTTTTGTAC-CACACATTGATAAATGCATAAACTATATAGTATTTTAACACCATGATAAGGTGACGCAATTATATTCTT---ATGATGGT---ATTTG---TTTGTAATT-ATTGT-GTG----ATAGTAT---TGGTTTA-T-TAATTATT
gi|94110 : -ATTACAGAA----AATTCGTACCA-------------CTT-----------CAATTTCGTACCACT-AC--------------------C--ATTTCGTAC-CAAATTGAGATTAATGCATAAACTATATTGTATTTCA-CACCATGATTAGGTGTCACAGTCATATTTTTATGATG---GT---ATTAG---TTT---ATT-ACCGTAATG----AT
gi|94111 : CATATAGATTAATGCATGAGCTGGATAATGTTTCA-CACCATGATTTGGTGTCACACTCAAATAATT---ATG---ATGGGAATTGTAATTTACTATTAAGTGT-GTG----ATAGTAC---TGGATTA-T-T-TTTATTTGAGG-TTT-AA-CTGTATTA-A-----CTATAAG-AC--A-------TATACTGGTCATACcaaacaatgtgtatttggatcacgagtattt
gi|94112 : TCA-CACTATTATCAGGTGTGACAACCATATTCTT---ATGATGGT---ATTTG---TTTGTAATT-CATGT-GTG----ATAGTAT---TGGTTTA-T-T-ATCAT
gi|94113 : ATAATCATG--------ACG---CT---GGTTG---TTTGTAATT-AGTAT-GTG----ATAGCAT---TGGATTA-T-T-ATTATTTGGGG-TTA-AA-C-T---TACAGGTCTCCAATAT-ACCAATTGTTGTCATTTTATTT-TACAT
gi|94114 : GTGC-GTG----TTTGTATACTTTGTTCG-TAT-ATTATTTGGGG-TTG-AAAC-G---TA-A-----CTAAAAT-AC--ATT----TTATTTTGTTTTTACATT-TATT
Alignments
lowQualScore : 1111111 1111 11 555555555555555555555555555 111111111 22222222222222222222222 111 1
lowQualScore : 1 44 2 5555555 44 6 3 999999 3 3333 44 1 99 11 3 99999 111111111111111111111111111 111111111 2 44444444444444444444444 2 2 44 666 888 444 444 33 2 2 4444 444 2 2 2 3 8 3 77777 3 77777 3 44 0 6666 4
lowQualScore : . .. . ....... .. . . ...... . .... .. . .. .. . ..... ........................... ......... . ....................... . . .. ... ... ... ... .. . . .... ... . . . . . . ..... . ..... . .. . .... .
lowQualScore : 0 66 2 0000000 66 7 3 666666 3 6666 66 0 22 22 1 33333 444444444444444444444444444 444444444 9 00000000000000000000000 9 5 00 555 222 111 111 22 4 2 7777 111 4 4 4 1 5 1 33333 1 77777 1 22 4 5555 0
consensus : ATTATNACTATAACATATC--AATATNACCTAAATGTA----G--TTTTTT--G-C-A------AA-A-A--C--TATGATTTTCTT--TTA--TTTAAGAGAGCTTTGAATGA-ATTACAGAC----GTTTCGTACCA-------------C-------------CAA---------ATT-GA--------------------G--GTTTCGTAC-CACACATAGGTTAATGCATAAACTTTACAGTGTTTCA-CACCATGATTAGGTGTCACAATCATATACTT---ACG---GT---ATTTG---TTTGTAATT-AGTGT-GTG----ATAGTAT---TGGATTG-T-T-ATTATTTGGGG-TTG-AA-C-G---TA-A-----CTAAAAT-AC--ATT----TTATTTTGTTTATACATT-TATT
Reference ( family-796 ) : ATTATNACTATAACATATC--AATATNACCTAAATGTA----G--TTTTTT--G-C-A------AA-A-A--C--TATGATTTTCTT--TTA--TTTAAGAGAGCTTTGAATGA-ATTACAGAC----GTTTCGTACCA-------------C-------------CAA---------ATT-GA--------------------G--GTTTCGTAC-CACACATAGGTTAATGCATAAACTTTACAGTGTTTCA-CACCATGATTAGGTGTCACAATCATATACTT---ACG---GT---ATTTG---TTTGTAATT-AGTGT-GTG----ATAGTAT---TGGATTG-T-T-ATTATTTGGGG-TTG-AA-C-G---TA-A-----CTAAAAT-AC--ATT----TTATTTTGTTTATACATT-TATT
gi|94094 : ATTATGACTATAACATATC--AATATTATCTAAATGTA----G--TTTTTT--G-C-A------AA-AAA--C--TATGATTTTCTT--TTA--TTTAAGAGAGCTTTGAATGA-ATTACAGAT----GTTTCGTACCA-------------C-------------CAA---------ATT-GA--------------------G--GTTTCGTAC-CACACATATGTTAATGCATAAACTTTACAGTGTTTCA-CACCATGATTAGGTGTCACAATCATTTACTT---ACG---GT---ATTTG---TTTG----T-AGTGT-GTGATCAATAGTAT---TGGATTG-T-T-ATTATTTGGGG-TTGTAA-C-G---TA-A-----CTAAAAT-AC--ATT----TTATTTTGTTTATACATT-TATT
gi|94095 : ATTATGATTATAACATATC--AATGTAATCTAAATGTA----G---TTTTT--G-CAA------AA-A-A--C--TATGATTTTCTT--TTA--TTTAAGAGAGCTTTGAATGA-ATTACAGAC----GTTTCGTGCCA-------------C-------------CAA---------ATT-GA--------------------G--GTTTCGTAC-CACACATATGTTAATGCATAAACTTTACAGTGTTTCA-CACCATGATTAGGTGTCACAATCATTTACTT---ACA---GT---ATTTG---TTTG----T-AGTGT-GTG----AAAGTAT---TGGATTG-T-T-ATTATTTGGGG-TTGAAA-C-G---TA-A-----CTAAAAT-AC--ATT----TTATTTTGTTTATACATT-TATT
gi|94096 : ATTGTAACTATAACATATC--AATATAACCTAAATGTA----G--TTTTTT--G-T-A------AA-A-A--C--TATGATTTTCTT--TTA--TTTAAGAGAGCTTTGAATGA-ATTACAGAC----GTTTCATACCA-------------C-------------CAA---------ACT-GA--------------------G--GTTTCGTAC-AACACATAGGTTAATGCATAAACTTTACAGTGTTTCA-CACCATGATTAGGTGTCACAATCATAATCTT---ACG---GT---ATTTG---TTTTTGATT-AGTGT-GTG----ATAGTAT---TGGATTG-T-T-ATTATTTGGGG-TTG-A---------A-A-----CTAAAAT-AC--ATT----TTATTTTGTTTATACATT-TATT
gi|94097 : ATTATGACTATAACATATC--AATATAATCTAAATGTA----G--TTTTTA--G-C-A------AA-AAA--C--TATGATTTTCTT--TTA--TTTAAGAGAGCTTTGAATGC-ATTACAGAC----GTTTCGTACCA-------------C-------------CAA---------ATT-AA--------------------G--GTTTCGTAC-CACACATATGTTAATGCATAAACTTTACAGTATTTCA-TACCATGATTAGGTGTCACAATCATTTACTT---ACG---GT---ATTTG---TTTG----C-AGTGT-GTG----ATAGTAT---TGGATTG-T-T-GTTATTTGGGG-TTGTAA-C-G---TA-A-----CTAAAAT-G----------TTATTTTGTTTATACATT-TATT
gi|94098 : ATTATGACTATAACATATC--AATATAACCTAAATGTA----G--TTTTTT--G-C-ACAAAAAAACA-A--C--AATGATTTTCTT--TTA--TTTAAGAGAGCTTTGAATGA-ATTACAGAC----GTTTCGTACAC-------------C-------------CAA---------ACT-GA--------------------G--GTTTCGTAC-AACCCATAGGTCAATGCATAAACTTT--AGTGTTTCA-CACTATGATTAGGTGTCACAATCATAAACTT---ACG---GT---ATTTG---TTTTTAATT-AGTGT-CTG----ATAGTAT---TGGATTG-T-T-ATTATTTAGGGTTTA-AA-C-G---TA-A-----CTAAAAT-AC--ATT----TTATTTTGTTTATACATT-TATT
gi|94099 : ATTATTACTATAACATATCTCAATA--ACCTAAATATA----T--TTTTTT--G-C-A------AA-A-AATC--TATGATTTTCTT--TTA--TTTAAGAGAGCTTTGAATGA-ATTACAGAA----GTTTCTTACCA-------------C-------------CAG---------ATTTGA--------------------G--GTTTCGTAC-CACACATAGGTTAATGCATAAACTTTACAGTGTTTTA-CACCATGATAAAGTGTCACAATCATAAACTT---ACG---GT---ATTTG---TTTTTAATT-AGTGT-GTG----ATAGTAT---TGGATTG-T-T-TTTATTTGGGG-TTGAAA-C-G---TA-A-----CTAAAAT-AC--GTT----TTATTTTTTTTATACATT-TATT
gi|94100 : ATTATTACTAAAACATATC--ACTGTAACATAAATATA----G--TCTTTT--G-C-A------AA-A-A--AAATATAGTTTTCTT--TTA--TTTAAGAGAGCTTTGAATGA-ATTACAGACCGGCGTTTCGTACCA-------------C-------------CAA---------ATT-GA--------------------G--GTTTCGTATGTACACATAGGTCAATGCATAAACTTTACAGTGTTTCA-CACCATGATTAGGTGTCACAATCATAAACTT---ACG---GT---ATTTG---TTTTTAATT-AGTGT-GTG----ATAGTAT---TGGATGG-A-T-ATTATTTGGGG-TTGAAA-C-G---TA-A-----CTTAAAT-AC--ATT----TTATTTTGTTTATACATT-TATT
gi|94101 : ATTATTACTATAACATATC--AATATGACCTAAATGTA----G--TTTT------C-A--------------------GGTTTT-TT--TTG--C--AAAAAATCTTTGAATGA-ATTACAGAG----GTTTCATACCA-------------C-------------CAA---------ATT-GAGAGGTTTTGTCAATTTGAGAG--GTTTCGTAC-AATACATAGATTAATGCATAAACTTTATAGTGTTTCA-CCCCATGATTAGGTGTGACACT--TATACT-----------T---ATTTG---TTTGTAATT-AGTGT-GTG----ATAGTAG---TGAATTG-T-T-ATTATTT--GG-TT--------------------TTAAAGTGAA--ATT----TTATTTTGTTTATATAT
gi|94102 : ATTATTGCTATAA-ACATT--AATATTACCTAAATGTATTTTT--TTTTTT--GCC-A------AA-A-C--C--TATGATTTTTTTTCTTAT-TTTAAGAGTGCTTTAAATG
gi|94103 : ATTATTGCTATAA-ACATT--AATATTACCTAAATGTATTTTT--TTTTTT--GCC-A------AA-A-C--C--TATGATTTTTTTTCTTAT-TTTAAGAGTGCTTTAAATG
gi|94104 : ATTATTGCTATAACAT--T--AATATTACCTAAATGGT----G--TTTTTTTTA-C-A------AA-A-C--C--TATGATTTT-TT--CTAATTTTAAGAGTGCTTTAAATG
gi|94105 : TAAAACATATC--AATATAACCTAAATGTA----GGTTTTTTT--G-C-A------AA-AAA--C--TATGATTTTCTT--TTA--TTTAAGAGTGCTTTGAATTA-ATTACAGAC----GTTTCGTACCA-------------C-------------CAA---------ACT-GA--------------------G--GTTTCGTAC-AACACAAAGGTTAATGCATTAACTTTACAGTGTTTCA-CACCATGATTAGGTGTCACAATCATAAACTT---ACG---GT---ATTTG---TTTTTAATT-AGTGT-GTG----ATAGTAT---TGGATTG-T-T-ATTATTTGGGG-TTGAAA-C-G---TA-A-----CTAAAAT-AC--ATT----TTATTTTGTTTATACATT-TATT
gi|94106 : gaaAATGA-ATTACAGAG----GTTTCGTACCA-------------CTACAATCTTATACCAA---------ATT-GA--------------------GACGTTTCGTAT-CACACATAGATTAATGCATAAACTATATAGTATTTCA-CACCATGGTTAGGTGTCACAATCATATTCTTATGATG---AT---ATTTG---TTTGTAATT-AGTGT-GTG----ATAGTAT---TGGTTTA-T-C-ACTGT
gi|94107 : tagtatttgagagaaaactattttcagtaatgttgatcttgatccaTTGATTGGTATTACAG------GTTTCGTACCATTAAAATTTTGCAC-------------AAA---------ATT-GA--------------------G--GTTTCTTAT-CACACATAGATTCATGCATAATCTATATAGTATTTCA-AACTATGATAAGGAGTCACAATCATACTCTTATGATG---GT---ATTTG---TTTGTAATT-AGTGT-GTG----AGAG-------AGATGGTT-T-ATTATTT
gi|94108 : TTTCGTACCAGACTTTGT-----C-------------CA--------------GA--------------------A--TTTTTGTAC-CTCACATAGATCAATGCTTGAACTTCATAGTGATTCA-CGCCATGATCAGATGTAACAATCAAATAATTATGATG---GT---ATTTG---TTTGTAACT-ACTG------------GTAG---TGGATTA-T-T-ATTATTTGTGG-TTA-AA-CTG---TA-A------TACAAG-AC--A-------TACT---TTTATCCATTATAT
gi|94109 : cactacaa-ATTACAGAG----GTTTCGTACCA-------------CTACAATTTTGTACCAA---------ATT-GA--------------------GAGGTTTTGTAC-CACACATTGATAAATGCATAAACTATATAGTATTTTAACACCATGATAAGGTGACGCAATTATATTCTT---ATGATGGT---ATTTG---TTTGTAATT-ATTGT-GTG----ATAGTAT---TGGTTTA-T-TAATTATT
gi|94110 : -ATTACAGAA----AATTCGTACCA-------------CTT-----------CAATTTCGTACCACT-AC--------------------C--ATTTCGTAC-CAAATTGAGATTAATGCATAAACTATATTGTATTTCA-CACCATGATTAGGTGTCACAGTCATATTTTTATGATG---GT---ATTAG---TTT---ATT-ACCGTAATG----AT
gi|94111 : CATATAGATTAATGCATGAGCTGGATAATGTTTCA-CACCATGATTTGGTGTCACACTCAAATAATT---ATG---ATGGGAATTGTAATTTACTATTAAGTGT-GTG----ATAGTAC---TGGATTA-T-T-TTTATTTGAGG-TTT-AA-CTGTATTA-A-----CTATAAG-AC--A-------TATACTGGTCATACcaaacaatgtgtatttggatcacgagtattt
gi|94112 : TCA-CACTATTATCAGGTGTGACAACCATATTCTT---ATGATGGT---ATTTG---TTTGTAATT-CATGT-GTG----ATAGTAT---TGGTTTA-T-T-ATCAT
gi|94113 : ATAATCATG--------ACG---CT---GGTTG---TTTGTAATT-AGTAT-GTG----ATAGCAT---TGGATTA-T-T-ATTATTTGGGG-TTA-AA-C-T---TACAGGTCTCCAATAT-ACCAATTGTTGTCATTTTATTT-TACAT
gi|94114 : GTGC-GTG----TTTGTATACTTTGTTCG-TAT-ATTATTTGGGG-TTG-AAAC-G---TA-A-----CTAAAAT-AC--ATT----TTATTTTGTTTTTACATT-TATT
blockSeqs : G TC A TTTTT TT C A CAAAAA C AAT AA C TC AT T CCGGC CTACAATCTTATAC TTTCGTACC T GAGGTTTTGTCAATTTGAGAG G A TA ATG ATG GGG TAA TT A A . ACT T A A T A A TGTAT C GGTCT G CA GTTG A
blockSeqs : A . A TTTTT . C . . . AA . C TC T . C TTAAAATTTTGCAC . . GAC . . AT ATG ATG . . TT . . . . . . . . T . TG . . . . . .
blockSeqs : G . A GGT . . . . . AA . C . T . C CTACAATTTTGTAC . . GAG . . TA ATG . . . TT . . . . . . . . A . G . . . . . .
blockSeqs : G . A G . . . . . A . C . . . C GACTTTGTC . . G . . AA ATG . . . TT . . . . . . . . A . G . . . . . .
blockSeqs : T . A G . . . . . A . C . . . C CTT . . G . . AA . . . . GT . . . . . . . . A . G . . . . . .
blockSeqs : T . G G . . . . . A . C . . . A C . . G . . AA . . . . TT . . . . . . . . . . G . . . . . .
blockSeqs : T . T G . . . . . A . T . . . G C . . G . . TA . . . . GT . . . . . . . . . . G . . . . . .
blockSeqs : T . T T . . . . . C . T . . . C C . . G . . AA . . . . GT . . . . . . . . . . G . . . . . .
blockSeqs : T . T G . . . . . C . C . . . G C . . G . . TT . . . . GT . . . . . . . . . . T . . . . . .
blockSeqs : T . A G . . . . . C . . . . . G C . . G . . CT . . . . GT . . . . . . . . . . G . . . . .
blockSeqs : . . G . . . . . . . . . . . A C . . G . . TA . . . . AC . . . . . . . . . . . . . . . .
blockSeqs : . . C . . A . . TT . . . . GT . . . . . . . . . . . . . . . .
blockSeqs : C . . C . . TT . . . . GT . . . . . . .
blockSeqs : . TA . . . . G . . . . . . .
blockSeqs : . TT . . . . G . . . . . . .
blockSeqs : . . . . . . . . . . . . .
blockSeqs : . .
blockSeqCons : A*** GT ****
originalCons : ATTATNACTATAACATATC--AATATNACCTAAATGTA----G--TTTTTT--G-C-A------AA-A-A--C--TATGATTTTCTT--TTA--TTTAAGAGAGCTTTGAATGA-ATTACAGAC----GTTTCGTACCA-------------C-------------CAA---------ATT-GA--------------------G--GTTTCGTAC-CACACATAGGTTAATGCATAAACTTTACAGTGTTTCA-CACCATGATTAGGTGTCACAATCATATACTT---ACG---GT---ATTTG---TTTGTAATT-AGTGT-GTG----ATAGTAT---TGGATTG-T-T-ATTATTTGGGG-TTG-AA-C-G---TA-A-----CTAAAAT-AC--ATT----TTATTTTGTTTATACATT-TATT
finalCons : ATTATNACTATAACATATC--AATATNACCTAAATGTA----G--TTTTTT--G-C-A------AA-AA---C--TATGATTTTCTT--TTA--TTTAAGAGAGCTTTGAATGA-ATTACAGAC----GTTTCGTACCA-------------C-------------CAA---------ATT-GA--------------------G--GTTTCGTAC-CACACATAGGTTAATGCATAAACTTTACAGTGTTTCA-CACCATGATTAGGTGTCACAATCATATACTT---ACG---GT---ATTTG---TTTGTAATT-AGTGT-GTG----ATAGTAT---TGGATTG-T-T-ATTATTTGGGG-TTG-AA-C-G---TA-A-----CTAAAAT-AC--ATT----TTATTTTGTTTATACATT-TATT
Alignments
lowQualScore : 1111111 1111 11 555555555555555555555555555 111111111 22222222222222222222222 111 1
lowQualScore : 1 44 2 5555555 44 6 3 999999 3 3333 44 1 99 11 3 99999 111111111111111111111111111 111111111 2 44444444444444444444444 2 2 44 666 888 444 444 33 2 2 4444 444 2 2 2 3 8 3 77777 3 77777 3 44 0 6666 4
lowQualScore : . .. . ....... .. . . ...... . .... .. . .. .. . ..... ........................... ......... . ....................... . . .. ... ... ... ... .. . . .... ... . . . . . . ..... . ..... . .. . .... .
lowQualScore : 0 66 2 0000000 66 7 3 666666 3 6666 66 0 22 22 1 33333 444444444444444444444444444 444444444 9 00000000000000000000000 9 5 00 555 222 111 111 22 4 2 7777 111 4 4 4 1 5 1 33333 1 77777 1 22 4 5555 0
consensus : ATTATNACTATAACATATC--AATATNACCTAAATGTA----G--TTTTTT--G-C-A------AA-A-A--C--TATGATTTTCTT--TTA--TTTAAGAGAGCTTTGAATGA-ATTACAGAC----GTTTCGTACCA-------------C-------------CAA---------ATT-GA--------------------G--GTTTCGTAC-CACACATAGGTTAATGCATAAACTTTACAGTGTTTCA-CACCATGATTAGGTGTCACAATCATATACTT---ACG---GT---ATTTG---TTTGTAATT-AGTGT-GTG----ATAGTAT---TGGATTG-T-T-ATTATTTGGGG-TTG-AA-C-G---TA-A-----CTAAAAT-AC--ATT----TTATTTTGTTTATACATT-TATT
Reference ( family-796 ) : ATTATNACTATAACATATC--AATATNACCTAAATGTA----G--TTTTTT--G-C-A------AA-A-A--C--TATGATTTTCTT--TTA--TTTAAGAGAGCTTTGAATGA-ATTACAGAC----GTTTCGTACCA-------------C-------------CAA---------ATT-GA--------------------G--GTTTCGTAC-CACACATAGGTTAATGCATAAACTTTACAGTGTTTCA-CACCATGATTAGGTGTCACAATCATATACTT---ACG---GT---ATTTG---TTTGTAATT-AGTGT-GTG----ATAGTAT---TGGATTG-T-T-ATTATTTGGGG-TTG-AA-C-G---TA-A-----CTAAAAT-AC--ATT----TTATTTTGTTTATACATT-TATT
gi|94094 : ATTATGACTATAACATATC--AATATTATCTAAATGTA----G--TTTTTT--G-C-A------AA-AAA--C--TATGATTTTCTT--TTA--TTTAAGAGAGCTTTGAATGA-ATTACAGAT----GTTTCGTACCA-------------C-------------CAA---------ATT-GA--------------------G--GTTTCGTAC-CACACATATGTTAATGCATAAACTTTACAGTGTTTCA-CACCATGATTAGGTGTCACAATCATTTACTT---ACG---GT---ATTTG---TTTG----T-AGTGT-GTGATCAATAGTAT---TGGATTG-T-T-ATTATTTGGGG-TTGTAA-C-G---TA-A-----CTAAAAT-AC--ATT----TTATTTTGTTTATACATT-TATT
gi|94095 : ATTATGATTATAACATATC--AATGTAATCTAAATGTA----G---TTTTT--G-CAA------AA-A-A--C--TATGATTTTCTT--TTA--TTTAAGAGAGCTTTGAATGA-ATTACAGAC----GTTTCGTGCCA-------------C-------------CAA---------ATT-GA--------------------G--GTTTCGTAC-CACACATATGTTAATGCATAAACTTTACAGTGTTTCA-CACCATGATTAGGTGTCACAATCATTTACTT---ACA---GT---ATTTG---TTTG----T-AGTGT-GTG----AAAGTAT---TGGATTG-T-T-ATTATTTGGGG-TTGAAA-C-G---TA-A-----CTAAAAT-AC--ATT----TTATTTTGTTTATACATT-TATT
gi|94096 : ATTGTAACTATAACATATC--AATATAACCTAAATGTA----G--TTTTTT--G-T-A------AA-A-A--C--TATGATTTTCTT--TTA--TTTAAGAGAGCTTTGAATGA-ATTACAGAC----GTTTCATACCA-------------C-------------CAA---------ACT-GA--------------------G--GTTTCGTAC-AACACATAGGTTAATGCATAAACTTTACAGTGTTTCA-CACCATGATTAGGTGTCACAATCATAATCTT---ACG---GT---ATTTG---TTTTTGATT-AGTGT-GTG----ATAGTAT---TGGATTG-T-T-ATTATTTGGGG-TTG-A---------A-A-----CTAAAAT-AC--ATT----TTATTTTGTTTATACATT-TATT
gi|94097 : ATTATGACTATAACATATC--AATATAATCTAAATGTA----G--TTTTTA--G-C-A------AA-AAA--C--TATGATTTTCTT--TTA--TTTAAGAGAGCTTTGAATGC-ATTACAGAC----GTTTCGTACCA-------------C-------------CAA---------ATT-AA--------------------G--GTTTCGTAC-CACACATATGTTAATGCATAAACTTTACAGTATTTCA-TACCATGATTAGGTGTCACAATCATTTACTT---ACG---GT---ATTTG---TTTG----C-AGTGT-GTG----ATAGTAT---TGGATTG-T-T-GTTATTTGGGG-TTGTAA-C-G---TA-A-----CTAAAAT-G----------TTATTTTGTTTATACATT-TATT
gi|94098 : ATTATGACTATAACATATC--AATATAACCTAAATGTA----G--TTTTTT--G-C-ACAAAAAAACA-A--C--AATGATTTTCTT--TTA--TTTAAGAGAGCTTTGAATGA-ATTACAGAC----GTTTCGTACAC-------------C-------------CAA---------ACT-GA--------------------G--GTTTCGTAC-AACCCATAGGTCAATGCATAAACTTT--AGTGTTTCA-CACTATGATTAGGTGTCACAATCATAAACTT---ACG---GT---ATTTG---TTTTTAATT-AGTGT-CTG----ATAGTAT---TGGATTG-T-T-ATTATTTAGGGTTTA-AA-C-G---TA-A-----CTAAAAT-AC--ATT----TTATTTTGTTTATACATT-TATT
gi|94099 : ATTATTACTATAACATATCTCAATA--ACCTAAATATA----T--TTTTTT--G-C-A------AA-A-AATC--TATGATTTTCTT--TTA--TTTAAGAGAGCTTTGAATGA-ATTACAGAA----GTTTCTTACCA-------------C-------------CAG---------ATTTGA--------------------G--GTTTCGTAC-CACACATAGGTTAATGCATAAACTTTACAGTGTTTTA-CACCATGATAAAGTGTCACAATCATAAACTT---ACG---GT---ATTTG---TTTTTAATT-AGTGT-GTG----ATAGTAT---TGGATTG-T-T-TTTATTTGGGG-TTGAAA-C-G---TA-A-----CTAAAAT-AC--GTT----TTATTTTTTTTATACATT-TATT
gi|94100 : ATTATTACTAAAACATATC--ACTGTAACATAAATATA----G--TCTTTT--G-C-A------AA-A-A--AAATATAGTTTTCTT--TTA--TTTAAGAGAGCTTTGAATGA-ATTACAGACCGGCGTTTCGTACCA-------------C-------------CAA---------ATT-GA--------------------G--GTTTCGTATGTACACATAGGTCAATGCATAAACTTTACAGTGTTTCA-CACCATGATTAGGTGTCACAATCATAAACTT---ACG---GT---ATTTG---TTTTTAATT-AGTGT-GTG----ATAGTAT---TGGATGG-A-T-ATTATTTGGGG-TTGAAA-C-G---TA-A-----CTTAAAT-AC--ATT----TTATTTTGTTTATACATT-TATT
gi|94101 : ATTATTACTATAACATATC--AATATGACCTAAATGTA----G--TTTT------C-A--------------------GGTTTT-TT--TTG--C--AAAAAATCTTTGAATGA-ATTACAGAG----GTTTCATACCA-------------C-------------CAA---------ATT-GAGAGGTTTTGTCAATTTGAGAG--GTTTCGTAC-AATACATAGATTAATGCATAAACTTTATAGTGTTTCA-CCCCATGATTAGGTGTGACACT--TATACT-----------T---ATTTG---TTTGTAATT-AGTGT-GTG----ATAGTAG---TGAATTG-T-T-ATTATTT--GG-TT--------------------TTAAAGTGAA--ATT----TTATTTTGTTTATATAT
gi|94102 : ATTATTGCTATAA-ACATT--AATATTACCTAAATGTATTTTT--TTTTTT--GCC-A------AA-A-C--C--TATGATTTTTTTTCTTAT-TTTAAGAGTGCTTTAAATG
gi|94103 : ATTATTGCTATAA-ACATT--AATATTACCTAAATGTATTTTT--TTTTTT--GCC-A------AA-A-C--C--TATGATTTTTTTTCTTAT-TTTAAGAGTGCTTTAAATG
gi|94104 : ATTATTGCTATAACAT--T--AATATTACCTAAATGGT----G--TTTTTTTTA-C-A------AA-A-C--C--TATGATTTT-TT--CTAATTTTAAGAGTGCTTTAAATG
gi|94105 : TAAAACATATC--AATATAACCTAAATGTA----GGTTTTTTT--G-C-A------AA-AAA--C--TATGATTTTCTT--TTA--TTTAAGAGTGCTTTGAATTA-ATTACAGAC----GTTTCGTACCA-------------C-------------CAA---------ACT-GA--------------------G--GTTTCGTAC-AACACAAAGGTTAATGCATTAACTTTACAGTGTTTCA-CACCATGATTAGGTGTCACAATCATAAACTT---ACG---GT---ATTTG---TTTTTAATT-AGTGT-GTG----ATAGTAT---TGGATTG-T-T-ATTATTTGGGG-TTGAAA-C-G---TA-A-----CTAAAAT-AC--ATT----TTATTTTGTTTATACATT-TATT
gi|94106 : gaaAATGA-ATTACAGAG----GTTTCGTACCA-------------CTACAATCTTATACCAA---------ATT-GA--------------------GACGTTTCGTAT-CACACATAGATTAATGCATAAACTATATAGTATTTCA-CACCATGGTTAGGTGTCACAATCATATTCTTATGATG---AT---ATTTG---TTTGTAATT-AGTGT-GTG----ATAGTAT---TGGTTTA-T-C-ACTGT
gi|94107 : tagtatttgagagaaaactattttcagtaatgttgatcttgatccaTTGATTGGTATTACAG------GTTTCGTACCATTAAAATTTTGCAC-------------AAA---------ATT-GA--------------------G--GTTTCTTAT-CACACATAGATTCATGCATAATCTATATAGTATTTCA-AACTATGATAAGGAGTCACAATCATACTCTTATGATG---GT---ATTTG---TTTGTAATT-AGTGT-GTG----AGAG-------AGATGGTT-T-ATTATTT
gi|94108 : TTTCGTACCAGACTTTGT-----C-------------CA--------------GA--------------------A--TTTTTGTAC-CTCACATAGATCAATGCTTGAACTTCATAGTGATTCA-CGCCATGATCAGATGTAACAATCAAATAATTATGATG---GT---ATTTG---TTTGTAACT-ACTG------------GTAG---TGGATTA-T-T-ATTATTTGTGG-TTA-AA-CTG---TA-A------TACAAG-AC--A-------TACT---TTTATCCATTATAT
gi|94109 : cactacaa-ATTACAGAG----GTTTCGTACCA-------------CTACAATTTTGTACCAA---------ATT-GA--------------------GAGGTTTTGTAC-CACACATTGATAAATGCATAAACTATATAGTATTTTAACACCATGATAAGGTGACGCAATTATATTCTT---ATGATGGT---ATTTG---TTTGTAATT-ATTGT-GTG----ATAGTAT---TGGTTTA-T-TAATTATT
gi|94110 : -ATTACAGAA----AATTCGTACCA-------------CTT-----------CAATTTCGTACCACT-AC--------------------C--ATTTCGTAC-CAAATTGAGATTAATGCATAAACTATATTGTATTTCA-CACCATGATTAGGTGTCACAGTCATATTTTTATGATG---GT---ATTAG---TTT---ATT-ACCGTAATG----AT
gi|94111 : CATATAGATTAATGCATGAGCTGGATAATGTTTCA-CACCATGATTTGGTGTCACACTCAAATAATT---ATG---ATGGGAATTGTAATTTACTATTAAGTGT-GTG----ATAGTAC---TGGATTA-T-T-TTTATTTGAGG-TTT-AA-CTGTATTA-A-----CTATAAG-AC--A-------TATACTGGTCATACcaaacaatgtgtatttggatcacgagtattt
gi|94112 : TCA-CACTATTATCAGGTGTGACAACCATATTCTT---ATGATGGT---ATTTG---TTTGTAATT-CATGT-GTG----ATAGTAT---TGGTTTA-T-T-ATCAT
gi|94113 : ATAATCATG--------ACG---CT---GGTTG---TTTGTAATT-AGTAT-GTG----ATAGCAT---TGGATTA-T-T-ATTATTTGGGG-TTA-AA-C-T---TACAGGTCTCCAATAT-ACCAATTGTTGTCATTTTATTT-TACAT
gi|94114 : GTGC-GTG----TTTGTATACTTTGTTCG-TAT-ATTATTTGGGG-TTG-AAAC-G---TA-A-----CTAAAAT-AC--ATT----TTATTTTGTTTTTACATT-TATT