lowQualScore                  :            1                      1                                                                                   1                                                                                             1        11111111                                333333333333                                                                                  3                 1                  1        1                                                                                 
lowQualScore                  :            1        6           6 5       0      777                                    0                 77777       4 3  44  3        3      555                                5     6                 3     9   1        11111111       6              3         888888888888         2                                                1              3        0  5  5           2              777 0     4  5    0        0  1  8888    4  1              6        3 3                0       
lowQualScore                  :            .        .           . .       .      ...                                    .                 .....       . .  ..  .        .      ...                                .     .                 .     .   .        ........       .              .         ............         .                                                .              .        .  .  .           .              ... .     .  .    .        .  .  ....    .  .              .        . .                .       
lowQualScore                  :            0        0           0 2       8      000                                    4                 00000       2 1  22  1        1      444                                5     6                 1     2   8        22222222       7              1         333333333333         4                                                2              6        0  0  0           0              000 6     0  2    7        7  4  5555    0  4              9        6 6                7       
consensus                     : ACCGTGTCCAAACGTTTCCGGAGGAGGCGGTGGAGGTAACGTTGGATGA---CGGTGGGGTAACGTTGAATGACGGTGGGATTCGCGATCAGCGGTAAGAAAACTA--T--CTTTTTTAA-CT--AT-TGTTGATA-ATTTTT---GGAAAATCTGAGTCGAGCAAGATGATGTCGTATCATTTCTGATCACTCGACAGCAA-CCGAA-TCTGTGCAGACT--------GTAGCCGTTTTCTTGATCATTC-GGGAAATACAA-GGAGGAA--TTTTCTGTGNAAACATTGGCACGAGTGTTTTAAAAGTGCGAAAACTGTCTTGTTACCGAACATAATTTGATAT-ATCATTTTCTT-TT-ATAAGCAACACCCTCCTCAACATTAT---ATTTTTA-TCCCATTCGGTCTTTTACTGGT----GTAA-AATTGATTTAGTGACGGTTTTATGGT-G-AAAAATCAGCGTAACGATGGAGGA
Reference ( gi|111071 )       : ACCGTGTCCAATCGTTTCCGAAGGAGGCGGTGAATGTAACGTTGGATGA---CGGTGGGGTAACGTTGAATGGCGGTGGGATTCGCGATCAGCGGTAAGAAAACTA--T--CTTTTTTTA-CT--AT-TGTTGATA-ATTTTT---GGAAAATCTGAGTCGAGCAAGATGATGTCGTATCATTTTTGATCACTCGGCAGCAA-CCGAA-TCTATGCAGACT--------GTAGCCGCTTTCTTGATCATTC-GGGAAATACAA-GAAGAAA--TTTTCTGTGTAAACATTGGCACGAGTGTTTTAAAAGTGCGAAAACTGTCTTGTTACCGAACATAATTTGATAT-ATCATTTT-TT-TT-ATAAGCAACACACTCCTCAACATTAT---ATTTTTA-CCACATTCGGTCTTTTACTGGT----GTAA-AATTGATTTAGTGACGGCTTTATGGT-G-AAAAATCAGCGTAACGATGGAGGA
gi|111069                     : ACCGTGCCCAAACGTTTCCGGAGGAGGCGGTGGAGGTAAAGTTTGATGA---CGGTGGGGTATCGTTGAATGACGGTGGAATTCGCGATCAGCGGTAAGAAAACTA--T--CTTTTTA-A-CT--AT-TGTTGATA-ATTTTT---GGAGAATCTGAGTCGAGCAAGATGATGTCGTATCATTTCTGATCTCTCGACAGCAA-CCGAA-TCTGTGCAGACT--------GTAGCCGTTTTCTTGATCATTC-GGGAAATACAA-GGA---A--TTTTCTGTGTAAACATTAGCACAAGTGTTTTAAAAGTGCGAAAACTGTCTTGTTACCGTACATAATTTGATAT-ATCATTTTCTT-TT-ATAAGCAACACCCTCCTCAACATTAT---A-TTTTA-CCCCATTCGGTCTTTTACTAGT----GTTA-AATTGATTTAGTGACGGTTTTATGGT-G-AAAAATCAGCGTAACGACGGAGGA
gi|111073                     : ACCGAGTCCTAGCGTTTTCGGAGAGGGCGGTGGAGGTAACGTTGGGTGA---CGGTGGGGTAACGTTGAATGACGGTTGGATTCGCGACCAACGGTAAGAAAACTA--T--CTTTTTTTA-CT--AT-TGTTGATA-ATCTAT---GGAAAATCTTAGTCGAGCAAGATAATGTCGTATCATTTCTGATCACTCGACAACAA-CTGAA-TCTGTGCAGACT--------GTAACCGTTTTCTTGATCATTC-TGGAAATAC----GAGGAA--TTTTCTGTGTAAACATTGGCACAAGTGTTTTAAAAGTGCGAAAACTGTGTGGTTA-CGAACATAATTTGATAT-ATCATTTTCTT-TT-ATAAGCAACACCCTCCTCAACATTAT---ATTTTTA-CCCCATTTGGTCTTTTACTGGT----GTAA-AATTAATTTAATGACGGTTTTATGAT-GAAAAAATCAGCGTAACGATGG
gi|111072                     : ACCGTGTCCAAACGTTTCCGGAGGAGGCGGTGGAGGTAACGTTGGATGA---CGGTGTTGTAAAGTTGAATGGCAGTGAGATTCGCGATCAGCGGTAAGAAAG-TA--T--CTTTTTTAA-CT--AT-TATTGATA-ATTTTT---G-AAAATCTGAGTCGAGCAAGATGATGTCGTATCATTTCTGGTCACTCGACAGCAA-CCGAA-TCTGTGCAGACT--------GTAGCCGTTTTCTTGATCATTT-GG-AAATACAA-GGA---A--TTTTCTGTGTAAACATTGGCATGAGTGTTTTAAAAGTGTGAAAACTGTTTTGTTACCGAACATAATTTTATAT-ATCATTTTCTT-TT-ATAAGCAACACCCTCCTCAACATAAT---A-TTTTA-CCCCATTCAGTCTTTTACTAGC----ATAT-AATTGATTTAGTGACGGTTTTA-GGC-A-AA
gi|111070                     : ACCATGTCCAAACGTTTCCGGAGGAGGCGGTGGAGGTAACGTTGGATGA---CGGTGGGGTAACGTTGAATGGCGGTGGGATTAGCGATCAGTGGTATGAAAACTA--T--CTTTTTTAA-CT--AT-TGTTGAAA-TTTTTT---GGAAAAACTGAGTCGAGCAAGATGATGTCGTATCATTTCTGATCACTCGACAGCAA-CCGAA-TCTGTGCAGACT--------GTAGCCGTTTTCTTGATCATTC-GGGAATTAC----AAGGAA--TTTTCTGTGTAAACATTGGCATGAATGTTTTA
gi|111074                     : ACCGTGTCCAAACGTTTCCGGAGGAGGCGGTGGAGGTAACGTTGGATGA---CGGTGGGGTAACGTTGAATGAAGTTGGGATTCGCGATCAGCGGTAAGAAAACTA--T--CTTTTTTAA-CT--AT-TGTTGATA-ATTTTT---GGAAAATCTGAGTCGAGCAAGATGATGTCGTATCATTTCTGATCACTCAACAGAAA-CCGAA-TCTGTGCAGACT--------
gi|111075                     : ACCGTGTCCAAACGTTTCCGGAGAAGGCGGTGGAGGTAACATTGGATGA---CGATAGGGTAACGTTGAATGACAGTGGAATTCGCGATCAGCGGATAGAAAGCTT--T--TTTTTTTTAACT--AT-TGTTGATA-ATTTTT---GGAAAATCTGAGTTGAGCAAGATG-------------TCTGTTCACTCGGTAGAAATCCGAA-TCTGTGCAGCCT--------GTATCCGTTTTGTTGATAATTC-CAGAAATacaatgaattttctgtgtaaacattggcatgagtgttttagaagtgcgaaaactgtcttgttaccgtacataatttgatatatcattttcttttataagcaacaccctcctcaacatcatattttatcccatttggtcttttactagtgttaaattgattttgtgacggttttatggtgtaaatcagcgtaacgatggagga
gi|111076                     :   CGTGTCCAATCGTTTCTTGAGGATGCGGTGGAGGTAACGT----------------AATAACGTTGAATGATGGCGGGATTTGCGACCAGCCGTAAGAAAACTAACT--TTTTTTTTA-CT--TT-TGTTAATA-ATTTTT---GAAAAATCTGAGTCGCGTAAGATAGTTTCGTA--AT-----ATTACT-GAC--CAA-C-----TTT-TACAGACT--------GAAGCTGTTTTATTGAATATTC-GGGAAATAC----ATGGAA--TTTTCGTTGGAAACGTTGGAACGAGTGTTCTAAAAGAGCGAAAACTGTTTTGTCACCTAACATAATTTGAT-T-TTCAT
gi|111077                     :      GTCCGAACATTTCCGGAGGAGGCGGTGGAGGTAACGTTGGATGA---CGGTGAGGTAATGTTGAATGACGGTGGGTTTCGCGATCAGCGGTAAGAAAACTA--C--CTTTTTTAA-TT--AT-TGTTGATA-ATTTTT---TGAAAATCTGAGTTGAGCAAGATGATGTCGTATCATTTCTGATCACTCGACAGCAA-CCGAA-TCTGTGCAGGCT--------GTAGCCATTTTCTTGATCATT--GGGAAATAC----AAGGAA--TTTTCTGTGTAAACATTGGCACAAGTGTTTTAAAAGTGCGAAAATTGTCTTGTTACCGTACATAATTTGATAT-ATCATTTT-CT-TTGATAAG---CACCCTCCTCAACATTAT---A-TTTTA-TCCCATTCAGTCTTTTACTAGT----GTAA-AATTGATTTAGTGACGGTTTTATGGC-G-AAAAATCAGCATAACGATGGAGGAcctgtcgggtcttttgaaaattgattgagtaatggttttacggttgaaaataagcgtaacgctggagga
gi|111078                     :       TCTAATCGTTTCTGGGGGTTGCAGGGGAGGTAACGTTGGGTGG---TGGTGGAATAACATTGAATGGTGATGGCATTTGCAACCAAGGGTAAGAAACTCA--T--AATTTTTGA-AA--ATCTGTTGATATGTTTTTTCGAGAAAATCTGAATGGAGCATGATGATGT--TAT-ATTTCTGATCACTCGGCAGCAA-CTAAACTCT-TACAGACTCTGAGACTGTAACCGATTTCTTAATCATTC-GAAAAA-A-AA-AAAGAAGATTTTTTTATGAAAAAATTGGAAAGAGTGTTTTAAAAGTGCGAAACC--TCTTGTTACCGCACATAATTTGATAT-ATTAGTT
gi|111079                     :             CGTTTCTTGAGGAGGCGATAGAAGTAACAC---ATGAAATTGGTGGACTAACGTACGATGGTG-TAGGATTACCAA-CAGCGATGAGGAAACGA--CAACTTTTGTAA-AT--GT-TTGTG-TA-TTTTTT---GAAAAATCGGAGTCATGCAAGATGATGTCATAACATTTCT
gi|111080                     :                                                                                            GTGGTAAGAAAATAA--A--CCTTTTTAA-CT--TG-TGTTGACA-ATTTTT---GGAAAATCTGAGTCGAGCAAGATGATGTCGTAACATCTCTCATCACTC
gi|111081                     :                                                                                                      AACTA--A--CTTTTTA-A-CT---T-T-TTGATT-TTTTTT---TTAAAATCTGAGTTGAGCAAGATGATGTCGTAACATTTCTGATCGCTCAACAGCTA-CCAAACTTTAT-CAGACT--------GTAGCAGTTCTCAGAACCATTT-GAGAAATACAT-G--GAAA---TTTCTGTGGAAACATTGACA
gi|111082                     :                                                                                                                    TTTGA-CTGTAT-TGTTGATA-ATTTTT---GGGAAATCTGAGTCGAGCAAGATGATGCCGTAACATTTCTGATCACTCGGCAGCAA-CCGAA-CCTGTACAAAC----------TAGCCGTTTTCTTGATCATTC-GGGA
gi|111083                     :                                                                                                                                                                             GTCGTAACATTTCTGATCGTTTGGCAGCTA-CCGAA-CCTTTATAGACT--------GTAGCGGTTCTCTTTATCATCCGGGGAAATACAA-GGTCA-----TTTCTGTGGAAACATTG
gi|111084                     :                                                                                                                                                                                          TGATCACTAGGCAGCAA-CCCAACTTTTTACAGACT--------GTAGCCGTTTTCTTGATCTTAC-GGAAAATACAACGAA------CTTCCGGTCGAAACATTGGAACGAGTGTTTTAAAAGTGCGAAAAATGTCTTGTTATCAAAAATAATTTGATAT-ATCATTTTCTT-TT-ATAAACAACG-ACTCCTTAACATTAT---ATTTTCA-TCCTATTCGGACTTCTGTTGGT----GTAA-AAATGATTTAGTGACGGTTTTATGGTGG-AAAAATCAGCGTAACACTGGAGaaaca
gi|111085                     :                                                                                                                                                                                                                                         cCCGTTTTCTTCATCATTC-GGAAAATACAATGAA-------TTTCGATGAAAACATTGTAACGAATGTTTTAAAAGTGTGAAAACTGTCTTGTTACCGA
gi|111086                     :                                                                                                                                                                                                                                                                AAATACAA-GGA---A--TTTTCTGTGTAAACATTGGCACGAGTGTTTTAAAAGTGCGAAAACTGTCTTGTTACCGAACATAATTTGATTTAATGATTTttatcttctctcgataagccagtgggatgtctgaaatagtcctacatgatttaaaatatcattttcttttagaaacaacaccgtccgcaacattatattttcatcctattcggtcttcatctggtgcaaaaacaattaagtgactattttatggtggaaaatcagcgtcacggt
gi|111074                     :                                                                                                                                                                                                                                                                              AA--TTTTCTGTGTAAACATTGGCATGAGTGTTTTAGAAGTGCGAAAACTGTCTTGTTACCGTACATAATTTGATAT-ATCATTTTCTT-TT-ATAAGCAACACCCTCCTCAACATCAT---A-TTTTA-TCCCATTTGGTCTTTTACTAGT----GTTA-AATTGATTTTGTGACGGTTTTATGGT-G--TAAATCAGCGTAACGATGGAGGA
gi|111085                     :                                                                                                                           accgtgtccaaacgtttccggaggaggcggtggaggtaacgttggatgacggtggggtaacgttgaatgaagttgggattcgcgatcagcggtaagaaaactatcttttttaactattgttgataatttttggaaaatctgagtcgagcaagatgatgtcgtatcatttctgatcactcaacagaaaccgaatctgtgcagactacaatgACATGATTTAAAAT-ATCATTTTCTT-TT-AGAAACAACACCGTCCGCAACATTAT---ATTTTCA-TCCTATTCGGTCTTCATCTGGT----GCAA-AAACAATTAAGTGACTATTTTATGGT-G-GAAAATCAGCGTCACGGT
gi|111087                     :                                                                                                                                                                                                                    ccgttttcttcatcattcggaaaatacaatgaatttcgatgaaaacattgtaacgaatgttttaaaagtgtgaaaactgtcttgttaccgattatcttctctcgataagccagtgggatgtctgaaatagtcctT-ATCAGTTT-CTATT-ATAAACAAAACCCTCTTCAAAATTAT---ATTC--A-CCCTAAACGACCCTTTGCTGATCAATGTAA-AAATGATTTGGTAGCGGTTTTATGGT-G-GCAAGTCAGCGTAACGCTGGAGGA
gi|111076                     :                                                                                                                                                                                                                                                                                                                                                                                         CCT-AACATAATTTGATTTTCA-TCCTGTCGGGTCTTTTG-----------AA-AATTGATTGAGTAATGGTTTTACGGT-T-GAAAATAAGCGTAACGCTGGAGGA
gi|111088                     :                                                                                                                 cgtgtccaatcgtttcttgaggatgcggtggaggtaacgtaataacgttgaatgatggcgggatttgcgaccagccgtaagaaaactaactttttttttacttttgttaataatttttgaaaaatctgagtcgcgtaagatagtttcgtaatattactgaccaacttttacagactgaagctgttttattgaatattcgggaaatacatggaattttcgttggaaacgttggaacgagtgttctaaaagagcgaaaactgttttgtcaAACATTAT---ATTTTTATTCTTATT-AGTCTTTTTCTCAC-----TAACAAATGATTTAGTAACGGATTATTGGT-G-AAAAATCAGTGTAAC
gi|111089                     :                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TTTATGGT-G-AAAAATCAGCGTAACGATGGAGGA

lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       11111111                                 2222222                                                                                                                                                                                                                   
lowQualScore                  :                                                                                                                                                                                                                                                                                   0                                     666                          55                            55555       2    33  2        2      555                                4                       2     8   3 1      00000000                      2          7777777  33        1                                                0              3                                       666 8     3                   0  7777    3  0                       3 3                        
lowQualScore                  :                                                                                                                                                                                                                                                                                   .                                     ...                          ..                            .....       .    ..  .        .      ...                                .                       .     .   . .      ........                      .          .......  ..        .                                                .              .                                       ... .     .                   .  ....    .  .                       . .                        
lowQualScore                  :                                                                                                                                                                                                                                                                                   3                                     444                          00                            88888       9    99  9        9      000                                5                       9     6   0 1      44444444                      7          3333333  99        0                                                3              3                                       444 8     6                   4  7777    6  5                       3 3                        
consensus                     :                                                                                                                                                                                                                                                                        ACCGTGTCCAAACGTTTCCGGAGGAGGCGGTGGAGGTAACGTTGGATGA---CGGTGGGGTAACGTTGAATGACGGTG--GGATTCGCGATCAGCGGTAAGAAAACTA--T--CTTTTTT-AACT--AT-TGTTGATA-ATTTTT---GGAAAATCTGAGTCGAGCAAGATGATGTCGTATCATTTCTGATCACTCGGCAGCAA-CCGAA-TCTGTGCAGACT--------GTAGCCGTTTTCTTGATCATTC-GGGAAATACAAGGAGGAAT--TTTCTGTGTAAACATTGGCACGAGTGTTTTAAAAGTGCGAAAACTGTCTTGTTACCGAACATAATTTGATAT-ATCATTTTCTTTTATAAGCAACACCCTCCTCAACATTAT---ATTTTTA-CCCCATTCGGTCTTTTACTGGT----GTAA-AATTGATTTAGTGACGGTTTTATGGT-G-AAAAATCAGCGTAACGATGGAGGA
Reference ( family-793 )      :                                                                                                                                                                                                                                                                        ACCGTGTCCAAACGTTTCCGGAGGAGGCGGTGGAGGTAACGTTGGATGA---CGGTGGGGTAACGTTGAATGACGGTG--GGATTCGCGATCAGCGGTAAGAAAACTA--T--CTTTTTT-AACT--AT-TGTTGATA-ATTTTT---GGAAAATCTGAGTCGAGCAAGATGATGTCGTATCATTTCTGATCACTCGACAGCAA-CCGAA-TCTGTGCAGACT--------GTAGCCGTTTTCTTGATCATTC-GGGAAATACAAGGAGGAAT--TTTCTGTGNAAACATTGGCACGAGTGTTTTAAAAGTGCGAAAACTGTCTTGTTACCGAACATAATTTGATAT-ATCATTTTCTTTTATAAGCAACACCCTCCTCAACATTAT---ATTTTTA-TCCCATTCGGTCTTTTACTGGT----GTAA-AATTGATTTAGTGACGGTTTTATGGT-G-AAAAATCAGCGTAACGATGGAGGA
gi|111069                     :                                                                                                                                                                                                                                                                        ACCGTGCCCAAACGTTTCCGGAGGAGGCGGTGGAGGTAAAGTTTGATGA---CGGTGGGGTATCGTTGAATGACGGTG--GAATTCGCGATCAGCGGTAAGAAAACTA--T--CTTTT-T-AACT--AT-TGTTGATA-ATTTTT---GGAGAATCTGAGTCGAGCAAGATGATGTCGTATCATTTCTGATCTCTCGACAGCAA-CCGAA-TCTGTGCAGACT--------GTAGCCGTTTTCTTGATCATTC-GGGAAATACA---AGGAAT--TTTCTGTGTAAACATTAGCACAAGTGTTTTAAAAGTGCGAAAACTGTCTTGTTACCGTACATAATTTGATAT-ATCATTTTCTTTTATAAGCAACACCCTCCTCAACATTAT---A-TTTTA-CCCCATTCGGTCTTTTACTAGT----GTTA-AATTGATTTAGTGACGGTTTTATGGT-G-AAAAATCAGCGTAACGACGGAGGA
gi|111070                     :                                                                                                                                                                                                                                                                        ACCATGTCCAAACGTTTCCGGAGGAGGCGGTGGAGGTAACGTTGGATGA---CGGTGGGGTAACGTTGAATGGCGGTG--GGATTAGCGATCAGTGGTATGAAAACTA--T--CTTTTTT-AACT--AT-TGTTGAAA-TTTTTT---GGAAAAACTGAGTCGAGCAAGATGATGTCGTATCATTTCTGATCACTCGACAGCAA-CCGAA-TCTGTGCAGACT--------GTAGCCGTTTTCTTGATCATTC-GGGAATTACA---AGGAAT--TTTCTGTGTAAACATTGGCATGAATGTTTTA
gi|111071                     :                                                                                                                                                                                                                                                                        ACCGTGTCCAATCGTTTCCGAAGGAGGCGGTGAATGTAACGTTGGATGA---CGGTGGGGTAACGTTGAATGGCGGTG--GGATTCGCGATCAGCGGTAAGAAAACTA--T--CTTTTTT-TACT--AT-TGTTGATA-ATTTTT---GGAAAATCTGAGTCGAGCAAGATGATGTCGTATCATTTTTGATCACTCGGCAGCAA-CCGAA-TCTATGCAGACT--------GTAGCCGCTTTCTTGATCATTC-GGGAAATACAAGAAGAAAT--TTTCTGTGTAAACATTGGCACGAGTGTTTTAAAAGTGCGAAAACTGTCTTGTTACCGAACATAATTTGATAT-ATCATTTT-TTTTATAAGCAACACACTCCTCAACATTAT---ATTTTTA-CCACATTCGGTCTTTTACTGGT----GTAA-AATTGATTTAGTGACGGCTTTATGGT-G-AAAAATCAGCGTAACGATGGAGGA
gi|111072                     :                                                                                                                                                                                                                                                                        ACCGTGTCCAAACGTTTCCGGAGGAGGCGGTGGAGGTAACGTTGGATGA---CGGTGTTGTAAAGTTGAATGGCAGTG--AGATTCGCGATCAGCGGTAAGAAAG-TA--T--CTTTTTT-AACT--AT-TATTGATA-ATTTTT---G-AAAATCTGAGTCGAGCAAGATGATGTCGTATCATTTCTGGTCACTCGACAGCAA-CCGAA-TCTGTGCAGACT--------GTAGCCGTTTTCTTGATCATTT-GG-AAATACAAGGA---AT--TTTCTGTGTAAACATTGGCATGAGTGTTTTAAAAGTGTGAAAACTGTTTTGTTACCGAACATAATTTTATAT-ATCATTTTCTTTTATAAGCAACACCCTCCTCAACATAAT---A-TTTTA-CCCCATTCAGTCTTTTACTAGC----ATAT-AATTGATTTAGTGACGGTTTTA-GGC-A-AA
gi|111073                     :                                                                                                                                                                                                                                                                        ACCGAGTCCTAGCGTTTTCGGAGAGGGCGGTGGAGGTAACGTTGGGTGA---CGGTGGGGTAACGTTGAATGACGGTT--GGATTCGCGACCAACGGTAAGAAAACTA--T--CTTTTTT-TACT--AT-TGTTGATA-ATCTAT---GGAAAATCTTAGTCGAGCAAGATAATGTCGTATCATTTCTGATCACTCGACAACAA-CTGAA-TCTGTGCAGACT--------GTAACCGTTTTCTTGATCATTC-TGGAAATAC---GAGGAAT--TTTCTGTGTAAACATTGGCACAAGTGTTTTAAAAGTGCGAAAACTGTGTGGTTA-CGAACATAATTTGATAT-ATCATTTTCTTTTATAAGCAACACCCTCCTCAACATTAT---ATTTTTA-CCCCATTTGGTCTTTTACTGGT----GTAA-AATTAATTTAATGACGGTTTTATGAT-GAAAAAATCAGCGTAACGATGG
gi|111074                     :                                                                                                                                                                                                                                                                        ACCGTGTCCAAACGTTTCCGGAGGAGGCGGTGGAGGTAACGTTGGATGA---CGGTGGGGTAACGTTGAATGAAGTTG--GGATTCGCGATCAGCGGTAAGAAAACTA--T--CTTTTTT-AACT--AT-TGTTGATA-ATTTTT---GGAAAATCTGAGTCGAGCAAGATGATGTCGTATCATTTCTGATCACT------CAA-CAGAA-ACCG---AATCT--------GT-GCAG--------------------ACTACAATGA---AT--TTTCTGTGTAAACATTGGCATGAGTGTTTTAGAAGTGCGAAAACTGTCTTGTTACCGTACATAATTTGATAT-ATCATTTTCTTTTATAAGCAACACCCTCCTCAACATCAT---A-TTTTA-TCCCATTTGGTCTTTTACTAGT----GTTA-AATTGATTTTGTGACGGTTTTATGGT-G--TAAATCAGCGTAACGATGGAGGA
gi|111075                     :                                                                                                                                                                                                                                                                        ACCGTGTCCAAACGTTTCCGGAGAAGGCGGTGGAGGTAACATTGGATGA---CGATAGGGTAACGTTGAATGACAGTG--GAATTCGCGATCAGCGGATAGAAAGCTT--T--TTTTTTTTAACT--AT-TGTTGATA-ATTTTT---GGAAAATCTGAGTTGAGCAAGATG-------------TCTGTTCACTCGGTAGAAATCCGAA-TCTGTGCAGCCT--------GTATCCGTTTTGTTGATAATTC-CAGAAAT
gi|111076                     :                                                                                                                                                                                                                                                                          CGTGTCCAATCGTTTCTTGAGGATGCGGTGGAGGTAACGT----------------AATAACGTTGAATGATGGCG--GGATTTGCGACCAGCCGTAAGAAAACTAACT--TTTTTTT-TACT--TT-TGTTAATA-ATTTTT---GAAAAATCTGAGTCGCGTAAGATAGTTTCGTA--AT-----ATTACT-GAC--CAA-C-----TTT-TACAGACT--------GAAGCTGTTTTATTGAATATTC-GGGAAATACATGGA---AT--TTTCGTTGGAAACGTTGGAACGAGTGTTCTAAAAGAGCGAAAACTGTTTTGTCACCTAACATAATTTGAT-T-TTCAT
gi|111076                     :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CCT-AACATAATTTGATTTTCA-TCCTGTCGGGTCTTTTG-----------AA-AATTGATTGAGTAATGGTTTTACGGT-T-GAAAATAAGCGTAACGCTGGAGGAcctgtcgggtcttttgaaaattgattgagtaatggttttacggttgaaaataagcgtaacgctggagga
gi|111077                     : cgtgtccaatcgtttcttgaggatgcggtggaggtaacgtaataacgttgaatgatggcgggatttgcgaccagccgtaagaaaactaactttttttttacttttgttaataatttttgaaaaatctgagtcgcgtaagatagtttcgtaatattactgaccaacttttacagactgaagctgttttattgaatattcgggaaatacatggaattttcgttggaaacgttggaacgagtgttctaaaagagcgaaaactgttttgtcaGTCCGAACATTTCCGGAGGAGGCGGTGGAGGTAACGTTGGATGA---CGGTGAGGTAATGTTGAATGACGGTG--GGTTTCGCGATCAGCGGTAAGAAAACTA--C--CTTTTTT-AATT--AT-TGTTGATA-ATTTTT---TGAAAATCTGAGTTGAGCAAGATGATGTCGTATCATTTCTGATCACTCGACAGCAA-CCGAA-TCTGTGCAGGCT--------GTAGCCATTTTCTTGATCATT--GGGAAATACA---AGGAAT--TTTCTGTGTAAACATTGGCACAAGTGTTTTAAAAGTGCGAAAATTGTCTTGTTACCGTACATAATTTGATAT-ATCATTTTCTTTGATAAG---CACCCTCCTCAACATTAT---A-TTTTA-TCCCATTCAGTCTTTTACTAGT----GTAA-AATTGATTTAGTGACGGTTTTATGGC-G-AAAAATCAGCATAACGATGGAGGA
gi|111078                     :                                                                                                                                                                                                                                                                              TCTAATCGTTTCTGGGGGTTGCAGGGGAGGTAACGTTGGGTGG---TGGTGGAATAACATTGAATGGTGATG--GCATTTGCAACCAAGGGTAAGAAACTCA--T--AATTTTT-GAAA--ATCTGTTGATATGTTTTTTCGAGAAAATCTGAATGGAGCATGATGATGT--TAT-ATTTCTGATCACTCGGCAGCAA-CTAAACTCT-TACAGACTCTGAGACTGTAACCGATTTCTTAATCATTC-GAAAAAAAAAAAGAAGATT--TTTTTATGAAAAAATTGGAAAGAGTGTTTTAAAAGTGCGAAACC--TCTTGTTACCGCACATAATTTGATAT-ATTAGTT
gi|111079                     :                                                                                                                                                                                                                                                                                    CGTTTCTTGAGGAGGCGATAGAAGTAACAC---ATGAAATTGGTGGACTAACGT---ACGATGGTGTAGGATTACCAA-CAGCGATGAGGAAACGA--CAACTTTTGT-AAAT--GT-TTGTG-TA-TTTTTT---GAAAAATCGGAGTCATGCAAGATGATGTCATAACATTTCT
gi|111080                     :                                                                                                                                                                                                                                                                                                                                                                     GTGGTAAGAAAATAA--A--CCTTTTT-AACT--TG-TGTTGACA-ATTTTT---GGAAAATCTGAGTCGAGCAAGATGATGTCGTAACATCTCTCATCACTC
gi|111081                     :                                                                                                                                                                                                                                                                                                                                                                               AACTA--A--CTTTTT--AACT---T-T-TTGATT-TTTTTT---TTAAAATCTGAGTTGAGCAAGATGATGTCGTAACATTTCTGATCGCTCAACAGCTA-CCAAACTTTAT-CAGACT--------GTAGCAGTTCTCAGAACCATTT-GAGAAATACATGGA--AA---TTTCTGTGGAAACATTGACA
gi|111082                     :                                                                                                                                                                                                                                                                                                                                                                                             TTT-GACTGTAT-TGTTGATA-ATTTTT---GGGAAATCTGAGTCGAGCAAGATGATGCCGTAACATTTCTGATCACTCGGCAGCAA-CCGAA-CCTGTACAAAC----------TAGCCGTTTTCTTGATCATTC-GGGA
gi|111083                     :                                                                                                                                                                                                                                                                                                                                                                                                                                                      GTCGTAACATTTCTGATCGTTTGGCAGCTA-CCGAA-CCTTTATAGACT--------GTAGCGGTTCTCTTTATCATCCGGGGAAATACAAGG-----TCATTTCTGTGGAAACATTG
gi|111084                     :                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CTGATCACTAGGCAGCAA-CCCAACTTTTTACAGACT--------GTAGCCGTTTTCTTGATCTTAC-GGAAAATACAACGA---AC--TTCCGGTCGAAACATTGGAACGAGTGTTTTAAAAGTGCGAAAAATGTCTTGTTATCAAAAATAATTTGATAT-ATCATTTTCTTTTATAAACAACG-ACTCCTTAACATTAT---ATTTTCA-TCCTATTCGGACTTCTGTTGGT----GTAA-AAATGATTTAGTGACGGTTTTATGGTGG-AAAAATCAGCGTAACACTGGAGaaaca
gi|111085                     :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CCGTTTTCTTCATCATTC-GGAAAATACAATGAA------TTTCGATGAAAACATTGTAACGAATGTTTTAAAAGTGTGAAAACTGTCTTGTTACCGA
gi|111085                     :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ACATGATTTAAAAT-ATCATTTTCTTTTAGAAACAACACCGTCCGCAACATTAT---ATTTTCA-TCCTATTCGGTCTTCATCTGGT----GCAA-AAACAATTAAGTGACTATTTTATGGT-G-GAAAATCAGCGTCACGGTttatcttctctcgataagccagtgggatgtctgaaatagtcctacatgatttaaaatatcattttcttttagaaacaacaccgtccgcaacattatattttcatcctattcggtcttcatctggtgcaaaaacaattaagtgactattttatggtggaaaatcagcgtcacggt
gi|111086                     :                                                                                                                                                                                                                                                                                                                                                                                                   ccgttttcttcatcattcggaaaatacaatgaatttcgatgaaaacattgtaacgaatgttttaaaagtgtgaaaactgtcttgttaccgattatcttctctcgataagccagtgggatgtctgaaatagtcctAAATACAAGGA---AT--TTTCTGTGTAAACATTGGCACGAGTGTTTTAAAAGTGCGAAAACTGTCTTGTTACCGAACATAATTTGATTTAATGATTT
gi|111087                     :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  T-ATCAGTTTCTATTATAAACAAAACCCTCTTCAAAATTAT---ATTC--A-CCCTAAACGACCCTTTGCTGATCAATGTAA-AAATGATTTGGTAGCGGTTTTATGGT-G-GCAAGTCAGCGTAACGCTGGAGGA
gi|111088                     :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   AACATTAT---ATTTTTATTCTTATT-AGTCTTTTTCTCAC-----TAACAAATGATTTAGTAACGGATTATTGGT-G-AAAAATCAGTGTAAC
gi|111089                     :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TTTATGGT-G-AAAAATCAGCGTAACGATGGAGGA

lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       11111111                                 2222222                                                                                                                                                                                                                   
lowQualScore                  :                                                                                                                                                                                                                                                                                   0                                     666                          55                            55555       2    33  2        2      555                                3                0      2     8   1 1      00000000                      2          7777777  33        1                                                0              3                                       666 8     3                   0  7777    3  0                       3 3                        
lowQualScore                  :                                                                                                                                                                                                                                                                                   .                                     ...                          ..                            .....       .    ..  .        .      ...                                .                .      .     .   . .      ........                      .          .......  ..        .                                                .              .                                       ... .     .                   .  ....    .  .                       . .                        
lowQualScore                  :                                                                                                                                                                                                                                                                                   3                                     444                          00                            88888       9    99  9        9      000                                0                4      9     6   2 1      44444444                      7          3333333  99        6                                                3              3                                       444 8     6                   4  7777    6  5                       3 3                        
consensus                     :                                                                                                                                                                                                                                                                        ACCGTGTCCAAACGTTTCCGGAGGAGGCGGTGGAGGTAACGTTGGATGA---CGGTGGGGTAACGTTGAATGACGGTG--GGATTCGCGATCAGCGGTAAGAAAACTA--T--CTTTTTT-AACT--AT-TGTTGATA-ATTTTT---GGAAAATCTGAGTCGAGCAAGATGATGTCGTANCATTTCTGATCACTCGGCAGCAA-CCGAA-TCTGTGCAGACT--------GTAGCCGTTTTCTTGATCATTC-GGGAAATACAAGGAGGAAT--TTTCTGTGTAAACATTGGCACGAGTGTTTTAAAAGTGCGAAAACTGTCTTGTTACCGAACATAATTTGATAT-ATCATTTTCTTTTATAAGCAACACCCTCCTCAACATTAT---ATTTTTA-CCCCATTCGGTCTTTTACTGGT----GTAA-AATTGATTTAGTGACGGTTTTATGGT-G-AAAAATCAGCGTAACGATGGAGGA
Reference ( family-793 )      :                                                                                                                                                                                                                                                                        ACCGTGTCCAAACGTTTCCGGAGGAGGCGGTGGAGGTAACGTTGGATGA---CGGTGGGGTAACGTTGAATGACGGTG--GGATTCGCGATCAGCGGTAAGAAAACTA--T--CTTTTTT-AACT--AT-TGTTGATA-ATTTTT---GGAAAATCTGAGTCGAGCAAGATGATGTCGTATCATTTCTGATCACTCGGCAGCAA-CCGAA-TCTGTGCAGACT--------GTAGCCGTTTTCTTGATCATTC-GGGAAATACAAGGAGGAAT--TTTCTGTGTAAACATTGGCACGAGTGTTTTAAAAGTGCGAAAACTGTCTTGTTACCGAACATAATTTGATAT-ATCATTTTCTTTTATAAGCAACACCCTCCTCAACATTAT---ATTTTTA-CCCCATTCGGTCTTTTACTGGT----GTAA-AATTGATTTAGTGACGGTTTTATGGT-G-AAAAATCAGCGTAACGATGGAGGA
gi|111069                     :                                                                                                                                                                                                                                                                        ACCGTGCCCAAACGTTTCCGGAGGAGGCGGTGGAGGTAAAGTTTGATGA---CGGTGGGGTATCGTTGAATGACGGTG--GAATTCGCGATCAGCGGTAAGAAAACTA--T--CTTTT-T-AACT--AT-TGTTGATA-ATTTTT---GGAGAATCTGAGTCGAGCAAGATGATGTCGTATCATTTCTGATCTCTCGACAGCAA-CCGAA-TCTGTGCAGACT--------GTAGCCGTTTTCTTGATCATTC-GGGAAATACA---AGGAAT--TTTCTGTGTAAACATTAGCACAAGTGTTTTAAAAGTGCGAAAACTGTCTTGTTACCGTACATAATTTGATAT-ATCATTTTCTTTTATAAGCAACACCCTCCTCAACATTAT---A-TTTTA-CCCCATTCGGTCTTTTACTAGT----GTTA-AATTGATTTAGTGACGGTTTTATGGT-G-AAAAATCAGCGTAACGACGGAGGA
gi|111070                     :                                                                                                                                                                                                                                                                        ACCATGTCCAAACGTTTCCGGAGGAGGCGGTGGAGGTAACGTTGGATGA---CGGTGGGGTAACGTTGAATGGCGGTG--GGATTAGCGATCAGTGGTATGAAAACTA--T--CTTTTTT-AACT--AT-TGTTGAAA-TTTTTT---GGAAAAACTGAGTCGAGCAAGATGATGTCGTATCATTTCTGATCACTCGACAGCAA-CCGAA-TCTGTGCAGACT--------GTAGCCGTTTTCTTGATCATTC-GGGAATTACA---AGGAAT--TTTCTGTGTAAACATTGGCATGAATGTTTTA
gi|111071                     :                                                                                                                                                                                                                                                                        ACCGTGTCCAATCGTTTCCGAAGGAGGCGGTGAATGTAACGTTGGATGA---CGGTGGGGTAACGTTGAATGGCGGTG--GGATTCGCGATCAGCGGTAAGAAAACTA--T--CTTTTTT-TACT--AT-TGTTGATA-ATTTTT---GGAAAATCTGAGTCGAGCAAGATGATGTCGTATCATTTTTGATCACTCGGCAGCAA-CCGAA-TCTATGCAGACT--------GTAGCCGCTTTCTTGATCATTC-GGGAAATACAAGAAGAAAT--TTTCTGTGTAAACATTGGCACGAGTGTTTTAAAAGTGCGAAAACTGTCTTGTTACCGAACATAATTTGATAT-ATCATTTT-TTTTATAAGCAACACACTCCTCAACATTAT---ATTTTTA-CCACATTCGGTCTTTTACTGGT----GTAA-AATTGATTTAGTGACGGCTTTATGGT-G-AAAAATCAGCGTAACGATGGAGGA
gi|111072                     :                                                                                                                                                                                                                                                                        ACCGTGTCCAAACGTTTCCGGAGGAGGCGGTGGAGGTAACGTTGGATGA---CGGTGTTGTAAAGTTGAATGGCAGTG--AGATTCGCGATCAGCGGTAAGAAAG-TA--T--CTTTTTT-AACT--AT-TATTGATA-ATTTTT---G-AAAATCTGAGTCGAGCAAGATGATGTCGTATCATTTCTGGTCACTCGACAGCAA-CCGAA-TCTGTGCAGACT--------GTAGCCGTTTTCTTGATCATTT-GG-AAATACAAGGA---AT--TTTCTGTGTAAACATTGGCATGAGTGTTTTAAAAGTGTGAAAACTGTTTTGTTACCGAACATAATTTTATAT-ATCATTTTCTTTTATAAGCAACACCCTCCTCAACATAAT---A-TTTTA-CCCCATTCAGTCTTTTACTAGC----ATAT-AATTGATTTAGTGACGGTTTTA-GGC-A-AA
gi|111073                     :                                                                                                                                                                                                                                                                        ACCGAGTCCTAGCGTTTTCGGAGAGGGCGGTGGAGGTAACGTTGGGTGA---CGGTGGGGTAACGTTGAATGACGGTT--GGATTCGCGACCAACGGTAAGAAAACTA--T--CTTTTTT-TACT--AT-TGTTGATA-ATCTAT---GGAAAATCTTAGTCGAGCAAGATAATGTCGTATCATTTCTGATCACTCGACAACAA-CTGAA-TCTGTGCAGACT--------GTAACCGTTTTCTTGATCATTC-TGGAAATAC---GAGGAAT--TTTCTGTGTAAACATTGGCACAAGTGTTTTAAAAGTGCGAAAACTGTGTGGTTA-CGAACATAATTTGATAT-ATCATTTTCTTTTATAAGCAACACCCTCCTCAACATTAT---ATTTTTA-CCCCATTTGGTCTTTTACTGGT----GTAA-AATTAATTTAATGACGGTTTTATGAT-GAAAAAATCAGCGTAACGATGG
gi|111074                     :                                                                                                                                                                                                                                                                        ACCGTGTCCAAACGTTTCCGGAGGAGGCGGTGGAGGTAACGTTGGATGA---CGGTGGGGTAACGTTGAATGAAGTTG--GGATTCGCGATCAGCGGTAAGAAAACTA--T--CTTTTTT-AACT--AT-TGTTGATA-ATTTTT---GGAAAATCTGAGTCGAGCAAGATGATGTCGTATCATTTCTGATCACT------CAA-CAGAA-ACCG---AATCT--------GT-GCAG--------------------ACTACAATGA---AT--TTTCTGTGTAAACATTGGCATGAGTGTTTTAGAAGTGCGAAAACTGTCTTGTTACCGTACATAATTTGATAT-ATCATTTTCTTTTATAAGCAACACCCTCCTCAACATCAT---A-TTTTA-TCCCATTTGGTCTTTTACTAGT----GTTA-AATTGATTTTGTGACGGTTTTATGGT-G--TAAATCAGCGTAACGATGGAGGA
gi|111075                     :                                                                                                                                                                                                                                                                        ACCGTGTCCAAACGTTTCCGGAGAAGGCGGTGGAGGTAACATTGGATGA---CGATAGGGTAACGTTGAATGACAGTG--GAATTCGCGATCAGCGGATAGAAAGCTT--T--TTTTTTTTAACT--AT-TGTTGATA-ATTTTT---GGAAAATCTGAGTTGAGCAAGATG-------------TCTGTTCACTCGGTAGAAATCCGAA-TCTGTGCAGCCT--------GTATCCGTTTTGTTGATAATTC-CAGAAAT
gi|111076                     :                                                                                                                                                                                                                                                                          CGTGTCCAATCGTTTCTTGAGGATGCGGTGGAGGTAACGT----------------AATAACGTTGAATGATGGCG--GGATTTGCGACCAGCCGTAAGAAAACTAACT--TTTTTTT-TACT--TT-TGTTAATA-ATTTTT---GAAAAATCTGAGTCGCGTAAGATAGTTTCGTAATATTACTGACC----------------AA-CTTTTACAGACT--------GAAGCTGTTTTATTGAATATTC-GGGAAATACA---TGGAAT--TTTCGTTGGAAACGTTGGAACGAGTGTTCTAAAAGAGCGAAAACTGTTTTGTCACCTAACATAATTTGAT-T-TTCAT
gi|111076                     :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CCT-AACATAATTTGATTTTCA-TCCTGTCGGGTCTTTTG-----------AA-AATTGATTGAGTAATGGTTTTACGGT-T-GAAAATAAGCGTAACGCTGGAGGAcctgtcgggtcttttgaaaattgattgagtaatggttttacggttgaaaataagcgtaacgctggagga
gi|111077                     : cgtgtccaatcgtttcttgaggatgcggtggaggtaacgtaataacgttgaatgatggcgggatttgcgaccagccgtaagaaaactaactttttttttacttttgttaataatttttgaaaaatctgagtcgcgtaagatagtttcgtaatattactgaccaacttttacagactgaagctgttttattgaatattcgggaaatacatggaattttcgttggaaacgttggaacgagtgttctaaaagagcgaaaactgttttgtcaGTCCGAACATTTCCGGAGGAGGCGGTGGAGGTAACGTTGGATGA---CGGTGAGGTAATGTTGAATGACGGTG--GGTTTCGCGATCAGCGGTAAGAAAACTA--C--CTTTTTT-AATT--AT-TGTTGATA-ATTTTT---TGAAAATCTGAGTTGAGCAAGATGATGTCGTATCATTTCTGATCACTCGACAGCAA-CCGAA-TCTGTGCAGGCT--------GTAGCCATTTTCTTGATCATT--GGGAAATACA---AGGAAT--TTTCTGTGTAAACATTGGCACAAGTGTTTTAAAAGTGCGAAAATTGTCTTGTTACCGTACATAATTTGATAT-ATCATTTTCTTTGATAAG---CACCCTCCTCAACATTAT---A-TTTTA-TCCCATTCAGTCTTTTACTAGT----GTAA-AATTGATTTAGTGACGGTTTTATGGC-G-AAAAATCAGCATAACGATGGAGGA
gi|111078                     :                                                                                                                                                                                                                                                                              TCTAATCGTTTCTGGGGGTTGCAGGGGAGGTAACGTTGGGTGG---TGGTGGAATAACATTGAATGGTGATG--GCATTTGCAACCAAGGGTAAGAAACTCA--T--AATTTTT-GAAA--ATCTGTTGATATGTTTTTTCGAGAAAATCTGAATGGAGCATGATGATGT--TAT-ATTTCTGATCACTCGGCAGCAA-CTAAACTCT-TACAGACTCTGAGACTGTAACCGATTTCTTAATCATTC-GAAAAAAAAAAAGAAGATT--TTTTTATGAAAAAATTGGAAAGAGTGTTTTAAAAGTGCGAAACC--TCTTGTTACCGCACATAATTTGATAT-ATTAGTT
gi|111079                     :                                                                                                                                                                                                                                                                                    CGTTTCTTGAGGAGGCGATAGAAGTAACAC---ATGAAATTGGTGGACTAACGT---ACGATGGTGTAGGATTACCAA-CAGCGATGAGGAAACGA--CAACTTTTGT-AAAT--GT-TTGTG-TA-TTTTTT---GAAAAATCGGAGTCATGCAAGATGATGTCATAACATTTCT
gi|111080                     :                                                                                                                                                                                                                                                                                                                                                                     GTGGTAAGAAAATAA--A--CCTTTTT-AACT--TG-TGTTGACA-ATTTTT---GGAAAATCTGAGTCGAGCAAGATGATGTCGTAACATCTCTCATCACTC
gi|111081                     :                                                                                                                                                                                                                                                                                                                                                                               AACTA--A--CTTTTT--AACT---T-T-TTGATT-TTTTTT---TTAAAATCTGAGTTGAGCAAGATGATGTCGTAACATTTCTGATCGCTCAACAGCTA-CCAAACTTTAT-CAGACT--------GTAGCAGTTCTCAGAACCATTT-GAGAAATACATGGA--AA---TTTCTGTGGAAACATTGACA
gi|111082                     :                                                                                                                                                                                                                                                                                                                                                                                             TTT-GACTGTAT-TGTTGATA-ATTTTT---GGGAAATCTGAGTCGAGCAAGATGATGCCGTAACATTTCTGATCACTCGGCAGCAA-CCGAA-CCTGTACAAAC----------TAGCCGTTTTCTTGATCATTC-GGGA
gi|111083                     :                                                                                                                                                                                                                                                                                                                                                                                                                                                      GTCGTAACATTTCTGATCGTTTGGCAGCTA-CCGAA-CCTTTATAGACT--------GTAGCGGTTCTCTTTATCATCCGGGGAAATACAAGG-----TCATTTCTGTGGAAACATTG
gi|111084                     :                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CTGATCACTAGGCAGCAA-CCCAACTTTTTACAGACT--------GTAGCCGTTTTCTTGATCTTAC-GGAAAATACAACGA---AC--TTCCGGTCGAAACATTGGAACGAGTGTTTTAAAAGTGCGAAAAATGTCTTGTTATCAAAAATAATTTGATAT-ATCATTTTCTTTTATAAACAACG-ACTCCTTAACATTAT---ATTTTCA-TCCTATTCGGACTTCTGTTGGT----GTAA-AAATGATTTAGTGACGGTTTTATGGTGG-AAAAATCAGCGTAACACTGGAGaaaca
gi|111085                     :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CCGTTTTCTTCATCATTC-GGAAAATACAATGAA------TTTCGATGAAAACATTGTAACGAATGTTTTAAAAGTGTGAAAACTGTCTTGTTACCGA
gi|111085                     :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ACATGATTTAAAAT-ATCATTTTCTTTTAGAAACAACACCGTCCGCAACATTAT---ATTTTCA-TCCTATTCGGTCTTCATCTGGT----GCAA-AAACAATTAAGTGACTATTTTATGGT-G-GAAAATCAGCGTCACGGTttatcttctctcgataagccagtgggatgtctgaaatagtcctacatgatttaaaatatcattttcttttagaaacaacaccgtccgcaacattatattttcatcctattcggtcttcatctggtgcaaaaacaattaagtgactattttatggtggaaaatcagcgtcacggt
gi|111086                     :                                                                                                                                                                                                                                                                                                                                                                                                   ccgttttcttcatcattcggaaaatacaatgaatttcgatgaaaacattgtaacgaatgttttaaaagtgtgaaaactgtcttgttaccgattatcttctctcgataagccagtgggatgtctgaaatagtcctAAATACAAGGA---AT--TTTCTGTGTAAACATTGGCACGAGTGTTTTAAAAGTGCGAAAACTGTCTTGTTACCGAACATAATTTGATTTAATGATTT
gi|111087                     :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  T-ATCAGTTTCTATTATAAACAAAACCCTCTTCAAAATTAT---ATTC--A-CCCTAAACGACCCTTTGCTGATCAATGTAA-AAATGATTTGGTAGCGGTTTTATGGT-G-GCAAGTCAGCGTAACGCTGGAGGA
gi|111088                     :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   AACATTAT---ATTTTTATTCTTATT-AGTCTTTTTCTCAC-----TAACAAATGATTTAGTAACGGATTATTGGT-G-AAAAATCAGTGTAAC
gi|111089                     :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TTTATGGT-G-AAAAATCAGCGTAACGATGGAGGA

lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       11111111                                 2222222                                                                                                                                                                                                                   
lowQualScore                  :                                                                                                                                                                                                                                                                                   0                                     666                          55                            55555       2    33  2        2      555                                4                0      2     8   1 1      00000000                      2          7777777  33        1                                                0              3                                       666 8     3                   0  7777    3  0                       3 3                        
lowQualScore                  :                                                                                                                                                                                                                                                                                   .                                     ...                          ..                            .....       .    ..  .        .      ...                                .                .      .     .   . .      ........                      .          .......  ..        .                                                .              .                                       ... .     .                   .  ....    .  .                       . .                        
lowQualScore                  :                                                                                                                                                                                                                                                                                   3                                     444                          00                            88888       9    99  9        9      000                                5                4      9     6   2 1      44444444                      7          3333333  99        6                                                3              3                                       444 8     6                   4  7777    6  5                       3 3                        
consensus                     :                                                                                                                                                                                                                                                                        ACCGTGTCCAAACGTTTCCGGAGGAGGCGGTGGAGGTAACGTTGGATGA---CGGTGGGGTAACGTTGAATGACGGTG--GGATTCGCGATCAGCGGTAAGAAAACTA--T--CTTTTTT-AACT--AT-TGTTGATA-ATTTTT---GGAAAATCTGAGTCGAGCAAGATGATGTCGTANCATTTCTGATCACTCGGCAGCAA-CCGAA-TCTGTGCAGACT--------GTAGCCGTTTTCTTGATCATTC-GGGAAATACAAGGAGGAAT--TTTCTGTGTAAACATTGGCACGAGTGTTTTAAAAGTGCGAAAACTGTCTTGTTACCGAACATAATTTGATAT-ATCATTTTCTTTTATAAGCAACACCCTCCTCAACATTAT---ATTTTTA-CCCCATTCGGTCTTTTACTGGT----GTAA-AATTGATTTAGTGACGGTTTTATGGT-G-AAAAATCAGCGTAACGATGGAGGA
Reference ( family-793 )      :                                                                                                                                                                                                                                                                        ACCGTGTCCAAACGTTTCCGGAGGAGGCGGTGGAGGTAACGTTGGATGA---CGGTGGGGTAACGTTGAATGACGGTG--GGATTCGCGATCAGCGGTAAGAAAACTA--T--CTTTTTT-AACT--AT-TGTTGATA-ATTTTT---GGAAAATCTGAGTCGAGCAAGATGATGTCGTANCATTTCTGATCACTCGGCAGCAA-CCGAA-TCTGTGCAGACT--------GTAGCCGTTTTCTTGATCATTC-GGGAAATACAAGGAGGAAT--TTTCTGTGTAAACATTGGCACGAGTGTTTTAAAAGTGCGAAAACTGTCTTGTTACCGAACATAATTTGATAT-ATCATTTTCTTTTATAAGCAACACCCTCCTCAACATTAT---ATTTTTA-CCCCATTCGGTCTTTTACTGGT----GTAA-AATTGATTTAGTGACGGTTTTATGGT-G-AAAAATCAGCGTAACGATGGAGGA
gi|111069                     :                                                                                                                                                                                                                                                                        ACCGTGCCCAAACGTTTCCGGAGGAGGCGGTGGAGGTAAAGTTTGATGA---CGGTGGGGTATCGTTGAATGACGGTG--GAATTCGCGATCAGCGGTAAGAAAACTA--T--CTTTT-T-AACT--AT-TGTTGATA-ATTTTT---GGAGAATCTGAGTCGAGCAAGATGATGTCGTATCATTTCTGATCTCTCGACAGCAA-CCGAA-TCTGTGCAGACT--------GTAGCCGTTTTCTTGATCATTC-GGGAAATACA---AGGAAT--TTTCTGTGTAAACATTAGCACAAGTGTTTTAAAAGTGCGAAAACTGTCTTGTTACCGTACATAATTTGATAT-ATCATTTTCTTTTATAAGCAACACCCTCCTCAACATTAT---A-TTTTA-CCCCATTCGGTCTTTTACTAGT----GTTA-AATTGATTTAGTGACGGTTTTATGGT-G-AAAAATCAGCGTAACGACGGAGGA
gi|111070                     :                                                                                                                                                                                                                                                                        ACCATGTCCAAACGTTTCCGGAGGAGGCGGTGGAGGTAACGTTGGATGA---CGGTGGGGTAACGTTGAATGGCGGTG--GGATTAGCGATCAGTGGTATGAAAACTA--T--CTTTTTT-AACT--AT-TGTTGAAA-TTTTTT---GGAAAAACTGAGTCGAGCAAGATGATGTCGTATCATTTCTGATCACTCGACAGCAA-CCGAA-TCTGTGCAGACT--------GTAGCCGTTTTCTTGATCATTC-GGGAATTACA---AGGAAT--TTTCTGTGTAAACATTGGCATGAATGTTTTA
gi|111071                     :                                                                                                                                                                                                                                                                        ACCGTGTCCAATCGTTTCCGAAGGAGGCGGTGAATGTAACGTTGGATGA---CGGTGGGGTAACGTTGAATGGCGGTG--GGATTCGCGATCAGCGGTAAGAAAACTA--T--CTTTTTT-TACT--AT-TGTTGATA-ATTTTT---GGAAAATCTGAGTCGAGCAAGATGATGTCGTATCATTTTTGATCACTCGGCAGCAA-CCGAA-TCTATGCAGACT--------GTAGCCGCTTTCTTGATCATTC-GGGAAATACAAGAAGAAAT--TTTCTGTGTAAACATTGGCACGAGTGTTTTAAAAGTGCGAAAACTGTCTTGTTACCGAACATAATTTGATAT-ATCATTTT-TTTTATAAGCAACACACTCCTCAACATTAT---ATTTTTA-CCACATTCGGTCTTTTACTGGT----GTAA-AATTGATTTAGTGACGGCTTTATGGT-G-AAAAATCAGCGTAACGATGGAGGA
gi|111072                     :                                                                                                                                                                                                                                                                        ACCGTGTCCAAACGTTTCCGGAGGAGGCGGTGGAGGTAACGTTGGATGA---CGGTGTTGTAAAGTTGAATGGCAGTG--AGATTCGCGATCAGCGGTAAGAAAG-TA--T--CTTTTTT-AACT--AT-TATTGATA-ATTTTT---G-AAAATCTGAGTCGAGCAAGATGATGTCGTATCATTTCTGGTCACTCGACAGCAA-CCGAA-TCTGTGCAGACT--------GTAGCCGTTTTCTTGATCATTT-GG-AAATACAAGGA---AT--TTTCTGTGTAAACATTGGCATGAGTGTTTTAAAAGTGTGAAAACTGTTTTGTTACCGAACATAATTTTATAT-ATCATTTTCTTTTATAAGCAACACCCTCCTCAACATAAT---A-TTTTA-CCCCATTCAGTCTTTTACTAGC----ATAT-AATTGATTTAGTGACGGTTTTA-GGC-A-AA
gi|111073                     :                                                                                                                                                                                                                                                                        ACCGAGTCCTAGCGTTTTCGGAGAGGGCGGTGGAGGTAACGTTGGGTGA---CGGTGGGGTAACGTTGAATGACGGTT--GGATTCGCGACCAACGGTAAGAAAACTA--T--CTTTTTT-TACT--AT-TGTTGATA-ATCTAT---GGAAAATCTTAGTCGAGCAAGATAATGTCGTATCATTTCTGATCACTCGACAACAA-CTGAA-TCTGTGCAGACT--------GTAACCGTTTTCTTGATCATTC-TGGAAATAC---GAGGAAT--TTTCTGTGTAAACATTGGCACAAGTGTTTTAAAAGTGCGAAAACTGTGTGGTTA-CGAACATAATTTGATAT-ATCATTTTCTTTTATAAGCAACACCCTCCTCAACATTAT---ATTTTTA-CCCCATTTGGTCTTTTACTGGT----GTAA-AATTAATTTAATGACGGTTTTATGAT-GAAAAAATCAGCGTAACGATGG
gi|111074                     :                                                                                                                                                                                                                                                                        ACCGTGTCCAAACGTTTCCGGAGGAGGCGGTGGAGGTAACGTTGGATGA---CGGTGGGGTAACGTTGAATGAAGTTG--GGATTCGCGATCAGCGGTAAGAAAACTA--T--CTTTTTT-AACT--AT-TGTTGATA-ATTTTT---GGAAAATCTGAGTCGAGCAAGATGATGTCGTATCATTTCTGATCACT------CAA-CAGAA-ACCG---AATCT--------GT-GCAG--------------------ACTACAATGA---AT--TTTCTGTGTAAACATTGGCATGAGTGTTTTAGAAGTGCGAAAACTGTCTTGTTACCGTACATAATTTGATAT-ATCATTTTCTTTTATAAGCAACACCCTCCTCAACATCAT---A-TTTTA-TCCCATTTGGTCTTTTACTAGT----GTTA-AATTGATTTTGTGACGGTTTTATGGT-G--TAAATCAGCGTAACGATGGAGGA
gi|111075                     :                                                                                                                                                                                                                                                                        ACCGTGTCCAAACGTTTCCGGAGAAGGCGGTGGAGGTAACATTGGATGA---CGATAGGGTAACGTTGAATGACAGTG--GAATTCGCGATCAGCGGATAGAAAGCTT--T--TTTTTTTTAACT--AT-TGTTGATA-ATTTTT---GGAAAATCTGAGTTGAGCAAGATG-------------TCTGTTCACTCGGTAGAAATCCGAA-TCTGTGCAGCCT--------GTATCCGTTTTGTTGATAATTC-CAGAAAT
gi|111076                     :                                                                                                                                                                                                                                                                          CGTGTCCAATCGTTTCTTGAGGATGCGGTGGAGGTAACGT----------------AATAACGTTGAATGATGGCG--GGATTTGCGACCAGCCGTAAGAAAACTAACT--TTTTTTT-TACT--TT-TGTTAATA-ATTTTT---GAAAAATCTGAGTCGCGTAAGATAGTTTCGTAATATTACTGACC----------------AA-CTTTTACAGACT--------GAAGCTGTTTTATTGAATATTC-GGGAAATACA---TGGAAT--TTTCGTTGGAAACGTTGGAACGAGTGTTCTAAAAGAGCGAAAACTGTTTTGTCACCTAACATAATTTGAT-T-TTCAT
gi|111076                     :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CCT-AACATAATTTGATTTTCA-TCCTGTCGGGTCTTTTG-----------AA-AATTGATTGAGTAATGGTTTTACGGT-T-GAAAATAAGCGTAACGCTGGAGGAcctgtcgggtcttttgaaaattgattgagtaatggttttacggttgaaaataagcgtaacgctggagga
gi|111077                     : cgtgtccaatcgtttcttgaggatgcggtggaggtaacgtaataacgttgaatgatggcgggatttgcgaccagccgtaagaaaactaactttttttttacttttgttaataatttttgaaaaatctgagtcgcgtaagatagtttcgtaatattactgaccaacttttacagactgaagctgttttattgaatattcgggaaatacatggaattttcgttggaaacgttggaacgagtgttctaaaagagcgaaaactgttttgtcaGTCCGAACATTTCCGGAGGAGGCGGTGGAGGTAACGTTGGATGA---CGGTGAGGTAATGTTGAATGACGGTG--GGTTTCGCGATCAGCGGTAAGAAAACTA--C--CTTTTTT-AATT--AT-TGTTGATA-ATTTTT---TGAAAATCTGAGTTGAGCAAGATGATGTCGTATCATTTCTGATCACTCGACAGCAA-CCGAA-TCTGTGCAGGCT--------GTAGCCATTTTCTTGATCATT--GGGAAATACA---AGGAAT--TTTCTGTGTAAACATTGGCACAAGTGTTTTAAAAGTGCGAAAATTGTCTTGTTACCGTACATAATTTGATAT-ATCATTTTCTTTGATAAG---CACCCTCCTCAACATTAT---A-TTTTA-TCCCATTCAGTCTTTTACTAGT----GTAA-AATTGATTTAGTGACGGTTTTATGGC-G-AAAAATCAGCATAACGATGGAGGA
gi|111078                     :                                                                                                                                                                                                                                                                              TCTAATCGTTTCTGGGGGTTGCAGGGGAGGTAACGTTGGGTGG---TGGTGGAATAACATTGAATGGTGATG--GCATTTGCAACCAAGGGTAAGAAACTCA--T--AATTTTT-GAAA--ATCTGTTGATATGTTTTTTCGAGAAAATCTGAATGGAGCATGATGATGTTATA---TTTCTGATCACTCGGCAGCAA-CTAAACTCT-TACAGACTCTGAGACTGTAACCGATTTCTTAATCATTC-GAAAAAAAAAAAGAAGATT--TTTTTATGAAAAAATTGGAAAGAGTGTTTTAAAAGTGCGAAACC--TCTTGTTACCGCACATAATTTGATAT-ATTAGTT
gi|111079                     :                                                                                                                                                                                                                                                                                    CGTTTCTTGAGGAGGCGATAGAAGTAACAC---ATGAAATTGGTGGACTAACGT---ACGATGGTGTAGGATTACCAA-CAGCGATGAGGAAACGA--CAACTTTTGT-AAAT--GT-TTGTG-TA-TTTTTT---GAAAAATCGGAGTCATGCAAGATGATGTCATAACATTTCT
gi|111080                     :                                                                                                                                                                                                                                                                                                                                                                     GTGGTAAGAAAATAA--A--CCTTTTT-AACT--TG-TGTTGACA-ATTTTT---GGAAAATCTGAGTCGAGCAAGATGATGTCGTAACATCTCTCATCACTC
gi|111081                     :                                                                                                                                                                                                                                                                                                                                                                               AACTA--A--CTTTTT--AACT---T-T-TTGATT-TTTTTT---TTAAAATCTGAGTTGAGCAAGATGATGTCGTAACATTTCTGATCGCTCAACAGCTA-CCAAACTTTAT-CAGACT--------GTAGCAGTTCTCAGAACCATTT-GAGAAATACATGGA--AA---TTTCTGTGGAAACATTGACA
gi|111082                     :                                                                                                                                                                                                                                                                                                                                                                                             TTT-GACTGTAT-TGTTGATA-ATTTTT---GGGAAATCTGAGTCGAGCAAGATGATGCCGTAACATTTCTGATCACTCGGCAGCAA-CCGAA-CCTGTACAAAC----------TAGCCGTTTTCTTGATCATTC-GGGA
gi|111083                     :                                                                                                                                                                                                                                                                                                                                                                                                                                                      GTCGTAACATTTCTGATCGTTTGGCAGCTA-CCGAA-CCTTTATAGACT--------GTAGCGGTTCTCTTTATCATCCGGGGAAATACAAGG-----TCATTTCTGTGGAAACATTG
gi|111084                     :                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CTGATCACTAGGCAGCAA-CCCAACTTTTTACAGACT--------GTAGCCGTTTTCTTGATCTTAC-GGAAAATACAACGA---AC--TTCCGGTCGAAACATTGGAACGAGTGTTTTAAAAGTGCGAAAAATGTCTTGTTATCAAAAATAATTTGATAT-ATCATTTTCTTTTATAAACAACG-ACTCCTTAACATTAT---ATTTTCA-TCCTATTCGGACTTCTGTTGGT----GTAA-AAATGATTTAGTGACGGTTTTATGGTGG-AAAAATCAGCGTAACACTGGAGaaaca
gi|111085                     :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CCGTTTTCTTCATCATTC-GGAAAATACAATGAA------TTTCGATGAAAACATTGTAACGAATGTTTTAAAAGTGTGAAAACTGTCTTGTTACCGA
gi|111085                     :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ACATGATTTAAAAT-ATCATTTTCTTTTAGAAACAACACCGTCCGCAACATTAT---ATTTTCA-TCCTATTCGGTCTTCATCTGGT----GCAA-AAACAATTAAGTGACTATTTTATGGT-G-GAAAATCAGCGTCACGGTttatcttctctcgataagccagtgggatgtctgaaatagtcctacatgatttaaaatatcattttcttttagaaacaacaccgtccgcaacattatattttcatcctattcggtcttcatctggtgcaaaaacaattaagtgactattttatggtggaaaatcagcgtcacggt
gi|111086                     :                                                                                                                                                                                                                                                                                                                                                                                                   ccgttttcttcatcattcggaaaatacaatgaatttcgatgaaaacattgtaacgaatgttttaaaagtgtgaaaactgtcttgttaccgattatcttctctcgataagccagtgggatgtctgaaatagtcctAAATACAAGGA---AT--TTTCTGTGTAAACATTGGCACGAGTGTTTTAAAAGTGCGAAAACTGTCTTGTTACCGAACATAATTTGATTTAATGATTT
gi|111087                     :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  T-ATCAGTTTCTATTATAAACAAAACCCTCTTCAAAATTAT---ATTC--A-CCCTAAACGACCCTTTGCTGATCAATGTAA-AAATGATTTGGTAGCGGTTTTATGGT-G-GCAAGTCAGCGTAACGCTGGAGGA
gi|111088                     :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   AACATTAT---ATTTTTATTCTTATT-AGTCTTTTTCTCAC-----TAACAAATGATTTAGTAACGGATTATTGGT-G-AAAAATCAGTGTAAC
gi|111089                     :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TTTATGGT-G-AAAAATCAGCGTAACGATGGAGGA


blockSeqs                     :                                                                                                                                                                                                                                                                                                                         AAT                          TA                            ACT         T    GT  C        T      TCG                                T                       T     C   G G      CTGAGACT                      G          AGAAGAA  CA        T                                                               A                                       TTG T     T                      CAAT    C                          G A
blockSeqs                     :                                                                                                                                                                                                                                                                                                                         .                            .                             CAA         .    .   .        .      .                                  T                       .     C   A G      .                             .          AAGAAGA  .         T                                                               .                                       .   T     .                      .       .                          . .
blockSeqs                     :                                                                                                                                                                                                                                                                                                                         .                            .                             T           .    .   .        .      .                                  T                       .     C   G G      .                             .          GAGGA    .         T                                                               .                                       .   T     .                      .       .                          . .
blockSeqs                     :                                                                                                                                                                                                                                                                                                                         .                            .                             T           .    .   .        .      .                                  T                       .     .   G G      .                             .          TGGAA    .         T                                                               .                                       .   T     .                      .       .                          . .
blockSeqs                     :                                                                                                                                                                                                                                                                                                                         .                            .                             T           .    .   .        .      .                                  T                       .     .   G G      .                             .          ATGAA    .         T                                                               .                                       .   T     .                      .       .                          . .
blockSeqs                     :                                                                                                                                                                                                                                                                                                                         .                            .                             T           .    .   .        .      .                                  A                       .     .   G A      .                             .          AGGA     .         G                                                               .                                       .   T     .                      .       .                          . .
blockSeqs                     :                                                                                                                                                                                                                                                                                                                         .                            .                             T           .    .   .        .      .                                  T                       .     .   T G      .                             .          AGGA     .         T                                                               .                                       .   T     .                      .       .                          . .
blockSeqs                     :                                                                                                                                                                                                                                                                                                                         .                            .                             T           .    .   .        .      .                                  A                       .     .   G A      .                             .          ATGA     .         A                                                               .                                       .   .     .                      .       .                          . .
blockSeqs                     :                                                                                                                                                                                                                                                                                                                         .                            .                             C           .    .   .        .      .                                  A                       .     .   A A      .                             .          TGGA     .         G                                                               .                                       .   .     .                      .       .                          . .
blockSeqs                     :                                                                                                                                                                                                                                                                                                                         .                            .                             T           .    .   .        .      .                                  A                       .     .   G A      .                             .          AGGA     .         G                                                               .                                       .   .     .                      .       .                          . .
blockSeqs                     :                                                                                                                                                                                                                                                                                                                                                                                    A           .    .   .        .      .                                  A                       .     .   T A      .                             .          ACGA     .         G                                                               .                                                                                                           . .
blockSeqs                     :                                                                                                                                                                                                                                                                                                                                                                                    A           .    .   .        .      .                                  A                       .     .   T .      .                             .          AGGA     .         A                                                                                                                                                                              
blockSeqs                     :                                                                                                                                                                                                                                                                                                                                                                                                .    .   .        .      .                                  .                       .     .   . .      .                             .          AGG      .         T                                                                                                                                                                              
blockSeqs                     :                                                                                                                                                                                                                                                                                                                                                                                                                                                            .                                                                        .                                                                                                                                                                                                            


blockSeqCons                  :                                                                                                                                                                                                                                                                        
originalCons                  :                                                                                                                                                                                                                                                                        ACCGTGTCCAAACGTTTCCGGAGGAGGCGGTGGAGGTAACGTTGGATGA---CGGTGGGGTAACGTTGAATGACGGTG--GGATTCGCGATCAGCGGTAAGAAAACTA--T--CTTTTTT-AACT--AT-TGTTGATA-ATTTTT---GGAAAATCTGAGTCGAGCAAGATGATGTCGTANCATTTCTGATCACTCGGCAGCAA-CCGAA-TCTGTGCAGACT--------GTAGCCGTTTTCTTGATCATTC-GGGAAATACAAGGAGGAAT--TTTCTGTGTAAACATTGGCACGAGTGTTTTAAAAGTGCGAAAACTGTCTTGTTACCGAACATAATTTGATAT-ATCATTTTCTTTTATAAGCAACACCCTCCTCAACATTAT---ATTTTTA-CCCCATTCGGTCTTTTACTGGT----GTAA-AATTGATTTAGTGACGGTTTTATGGT-G-AAAAATCAGCGTAACGATGGAGGA
finalCons                     :                                                                                                                                                                                                                                                                        ACCGTGTCCAAACGTTTCCGGAGGAGGCGGTGGAGGTAACGTTGGATGA---CGGTGGGGTAACGTTGAATGACGGTG--GGATTCGCGATCAGCGGTAAGAAAACTA--T--CTTTTTT-AACT--AT-TGTTGATA-ATTTTT---GGAAAATCTGAGTCGAGCAAGATGATGTCGTANCATTTCTGATCACTCGGCAGCAA-CCGAA-TCTGTGCAGACT--------GTAGCCGTTTTCTTGATCATTC-GGGAAATACAAGGAGGAAT--TTTCTGTGTAAACATTGGCACGAGTGTTTTAAAAGTGCGAAAACTGTCTTGTTACCGAACATAATTTGATAT-ATCATTTTCTTTTATAAGCAACACCCTCCTCAACATTAT---ATTTTTA-CCCCATTCGGTCTTTTACTGGT----GTAA-AATTGATTTAGTGACGGTTTTATGGT-G-AAAAATCAGCGTAACGATGGAGGA

lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       11111111                                 2222222                                                                                                                                                                                                                   
lowQualScore                  :                                                                                                                                                                                                                                                                                   0                                     666                          55                            55555       2    33  2        2      555                                4                0      2     8   1 1      00000000                      2          7777777  33        1                                                0              3                                       666 8     3                   0  7777    3  0                       3 3                        
lowQualScore                  :                                                                                                                                                                                                                                                                                   .                                     ...                          ..                            .....       .    ..  .        .      ...                                .                .      .     .   . .      ........                      .          .......  ..        .                                                .              .                                       ... .     .                   .  ....    .  .                       . .                        
lowQualScore                  :                                                                                                                                                                                                                                                                                   3                                     444                          00                            88888       9    99  9        9      000                                5                4      9     6   2 1      44444444                      7          3333333  99        6                                                3              3                                       444 8     6                   4  7777    6  5                       3 3                        
consensus                     :                                                                                                                                                                                                                                                                        ACCGTGTCCAAACGTTTCCGGAGGAGGCGGTGGAGGTAACGTTGGATGA---CGGTGGGGTAACGTTGAATGACGGTG--GGATTCGCGATCAGCGGTAAGAAAACTA--T--CTTTTTT-AACT--AT-TGTTGATA-ATTTTT---GGAAAATCTGAGTCGAGCAAGATGATGTCGTANCATTTCTGATCACTCGGCAGCAA-CCGAA-TCTGTGCAGACT--------GTAGCCGTTTTCTTGATCATTC-GGGAAATACAAGGAGGAAT--TTTCTGTGTAAACATTGGCACGAGTGTTTTAAAAGTGCGAAAACTGTCTTGTTACCGAACATAATTTGATAT-ATCATTTTCTTTTATAAGCAACACCCTCCTCAACATTAT---ATTTTTA-CCCCATTCGGTCTTTTACTGGT----GTAA-AATTGATTTAGTGACGGTTTTATGGT-G-AAAAATCAGCGTAACGATGGAGGA
Reference ( family-793 )      :                                                                                                                                                                                                                                                                        ACCGTGTCCAAACGTTTCCGGAGGAGGCGGTGGAGGTAACGTTGGATGA---CGGTGGGGTAACGTTGAATGACGGTG--GGATTCGCGATCAGCGGTAAGAAAACTA--T--CTTTTTT-AACT--AT-TGTTGATA-ATTTTT---GGAAAATCTGAGTCGAGCAAGATGATGTCGTANCATTTCTGATCACTCGGCAGCAA-CCGAA-TCTGTGCAGACT--------GTAGCCGTTTTCTTGATCATTC-GGGAAATACAAGGAGGAAT--TTTCTGTGTAAACATTGGCACGAGTGTTTTAAAAGTGCGAAAACTGTCTTGTTACCGAACATAATTTGATAT-ATCATTTTCTTTTATAAGCAACACCCTCCTCAACATTAT---ATTTTTA-CCCCATTCGGTCTTTTACTGGT----GTAA-AATTGATTTAGTGACGGTTTTATGGT-G-AAAAATCAGCGTAACGATGGAGGA
gi|111069                     :                                                                                                                                                                                                                                                                        ACCGTGCCCAAACGTTTCCGGAGGAGGCGGTGGAGGTAAAGTTTGATGA---CGGTGGGGTATCGTTGAATGACGGTG--GAATTCGCGATCAGCGGTAAGAAAACTA--T--CTTTT-T-AACT--AT-TGTTGATA-ATTTTT---GGAGAATCTGAGTCGAGCAAGATGATGTCGTATCATTTCTGATCTCTCGACAGCAA-CCGAA-TCTGTGCAGACT--------GTAGCCGTTTTCTTGATCATTC-GGGAAATACA---AGGAAT--TTTCTGTGTAAACATTAGCACAAGTGTTTTAAAAGTGCGAAAACTGTCTTGTTACCGTACATAATTTGATAT-ATCATTTTCTTTTATAAGCAACACCCTCCTCAACATTAT---A-TTTTA-CCCCATTCGGTCTTTTACTAGT----GTTA-AATTGATTTAGTGACGGTTTTATGGT-G-AAAAATCAGCGTAACGACGGAGGA
gi|111070                     :                                                                                                                                                                                                                                                                        ACCATGTCCAAACGTTTCCGGAGGAGGCGGTGGAGGTAACGTTGGATGA---CGGTGGGGTAACGTTGAATGGCGGTG--GGATTAGCGATCAGTGGTATGAAAACTA--T--CTTTTTT-AACT--AT-TGTTGAAA-TTTTTT---GGAAAAACTGAGTCGAGCAAGATGATGTCGTATCATTTCTGATCACTCGACAGCAA-CCGAA-TCTGTGCAGACT--------GTAGCCGTTTTCTTGATCATTC-GGGAATTACA---AGGAAT--TTTCTGTGTAAACATTGGCATGAATGTTTTA
gi|111071                     :                                                                                                                                                                                                                                                                        ACCGTGTCCAATCGTTTCCGAAGGAGGCGGTGAATGTAACGTTGGATGA---CGGTGGGGTAACGTTGAATGGCGGTG--GGATTCGCGATCAGCGGTAAGAAAACTA--T--CTTTTTT-TACT--AT-TGTTGATA-ATTTTT---GGAAAATCTGAGTCGAGCAAGATGATGTCGTATCATTTTTGATCACTCGGCAGCAA-CCGAA-TCTATGCAGACT--------GTAGCCGCTTTCTTGATCATTC-GGGAAATACAAGAAGAAAT--TTTCTGTGTAAACATTGGCACGAGTGTTTTAAAAGTGCGAAAACTGTCTTGTTACCGAACATAATTTGATAT-ATCATTTT-TTTTATAAGCAACACACTCCTCAACATTAT---ATTTTTA-CCACATTCGGTCTTTTACTGGT----GTAA-AATTGATTTAGTGACGGCTTTATGGT-G-AAAAATCAGCGTAACGATGGAGGA
gi|111072                     :                                                                                                                                                                                                                                                                        ACCGTGTCCAAACGTTTCCGGAGGAGGCGGTGGAGGTAACGTTGGATGA---CGGTGTTGTAAAGTTGAATGGCAGTG--AGATTCGCGATCAGCGGTAAGAAAG-TA--T--CTTTTTT-AACT--AT-TATTGATA-ATTTTT---G-AAAATCTGAGTCGAGCAAGATGATGTCGTATCATTTCTGGTCACTCGACAGCAA-CCGAA-TCTGTGCAGACT--------GTAGCCGTTTTCTTGATCATTT-GG-AAATACAAGGA---AT--TTTCTGTGTAAACATTGGCATGAGTGTTTTAAAAGTGTGAAAACTGTTTTGTTACCGAACATAATTTTATAT-ATCATTTTCTTTTATAAGCAACACCCTCCTCAACATAAT---A-TTTTA-CCCCATTCAGTCTTTTACTAGC----ATAT-AATTGATTTAGTGACGGTTTTA-GGC-A-AA
gi|111073                     :                                                                                                                                                                                                                                                                        ACCGAGTCCTAGCGTTTTCGGAGAGGGCGGTGGAGGTAACGTTGGGTGA---CGGTGGGGTAACGTTGAATGACGGTT--GGATTCGCGACCAACGGTAAGAAAACTA--T--CTTTTTT-TACT--AT-TGTTGATA-ATCTAT---GGAAAATCTTAGTCGAGCAAGATAATGTCGTATCATTTCTGATCACTCGACAACAA-CTGAA-TCTGTGCAGACT--------GTAACCGTTTTCTTGATCATTC-TGGAAATAC---GAGGAAT--TTTCTGTGTAAACATTGGCACAAGTGTTTTAAAAGTGCGAAAACTGTGTGGTTA-CGAACATAATTTGATAT-ATCATTTTCTTTTATAAGCAACACCCTCCTCAACATTAT---ATTTTTA-CCCCATTTGGTCTTTTACTGGT----GTAA-AATTAATTTAATGACGGTTTTATGAT-GAAAAAATCAGCGTAACGATGG
gi|111074                     :                                                                                                                                                                                                                                                                        ACCGTGTCCAAACGTTTCCGGAGGAGGCGGTGGAGGTAACGTTGGATGA---CGGTGGGGTAACGTTGAATGAAGTTG--GGATTCGCGATCAGCGGTAAGAAAACTA--T--CTTTTTT-AACT--AT-TGTTGATA-ATTTTT---GGAAAATCTGAGTCGAGCAAGATGATGTCGTATCATTTCTGATCACT------CAA-CAGAA-ACCG---AATCT--------GT-GCAG--------------------ACTACAATGA---AT--TTTCTGTGTAAACATTGGCATGAGTGTTTTAGAAGTGCGAAAACTGTCTTGTTACCGTACATAATTTGATAT-ATCATTTTCTTTTATAAGCAACACCCTCCTCAACATCAT---A-TTTTA-TCCCATTTGGTCTTTTACTAGT----GTTA-AATTGATTTTGTGACGGTTTTATGGT-G--TAAATCAGCGTAACGATGGAGGA
gi|111075                     :                                                                                                                                                                                                                                                                        ACCGTGTCCAAACGTTTCCGGAGAAGGCGGTGGAGGTAACATTGGATGA---CGATAGGGTAACGTTGAATGACAGTG--GAATTCGCGATCAGCGGATAGAAAGCTT--T--TTTTTTTTAACT--AT-TGTTGATA-ATTTTT---GGAAAATCTGAGTTGAGCAAGATG-------------TCTGTTCACTCGGTAGAAATCCGAA-TCTGTGCAGCCT--------GTATCCGTTTTGTTGATAATTC-CAGAAAT
gi|111076                     :                                                                                                                                                                                                                                                                          CGTGTCCAATCGTTTCTTGAGGATGCGGTGGAGGTAACGT----------------AATAACGTTGAATGATGGCG--GGATTTGCGACCAGCCGTAAGAAAACTAACT--TTTTTTT-TACT--TT-TGTTAATA-ATTTTT---GAAAAATCTGAGTCGCGTAAGATAGTTTCGTAATATTACTGACC----------------AA-CTTTTACAGACT--------GAAGCTGTTTTATTGAATATTC-GGGAAATACA---TGGAAT--TTTCGTTGGAAACGTTGGAACGAGTGTTCTAAAAGAGCGAAAACTGTTTTGTCACCTAACATAATTTGAT-T-TTCAT
gi|111076                     :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CCT-AACATAATTTGATTTTCA-TCCTGTCGGGTCTTTTG-----------AA-AATTGATTGAGTAATGGTTTTACGGT-T-GAAAATAAGCGTAACGCTGGAGGAcctgtcgggtcttttgaaaattgattgagtaatggttttacggttgaaaataagcgtaacgctggagga
gi|111077                     : cgtgtccaatcgtttcttgaggatgcggtggaggtaacgtaataacgttgaatgatggcgggatttgcgaccagccgtaagaaaactaactttttttttacttttgttaataatttttgaaaaatctgagtcgcgtaagatagtttcgtaatattactgaccaacttttacagactgaagctgttttattgaatattcgggaaatacatggaattttcgttggaaacgttggaacgagtgttctaaaagagcgaaaactgttttgtcaGTCCGAACATTTCCGGAGGAGGCGGTGGAGGTAACGTTGGATGA---CGGTGAGGTAATGTTGAATGACGGTG--GGTTTCGCGATCAGCGGTAAGAAAACTA--C--CTTTTTT-AATT--AT-TGTTGATA-ATTTTT---TGAAAATCTGAGTTGAGCAAGATGATGTCGTATCATTTCTGATCACTCGACAGCAA-CCGAA-TCTGTGCAGGCT--------GTAGCCATTTTCTTGATCATT--GGGAAATACA---AGGAAT--TTTCTGTGTAAACATTGGCACAAGTGTTTTAAAAGTGCGAAAATTGTCTTGTTACCGTACATAATTTGATAT-ATCATTTTCTTTGATAAG---CACCCTCCTCAACATTAT---A-TTTTA-TCCCATTCAGTCTTTTACTAGT----GTAA-AATTGATTTAGTGACGGTTTTATGGC-G-AAAAATCAGCATAACGATGGAGGA
gi|111078                     :                                                                                                                                                                                                                                                                              TCTAATCGTTTCTGGGGGTTGCAGGGGAGGTAACGTTGGGTGG---TGGTGGAATAACATTGAATGGTGATG--GCATTTGCAACCAAGGGTAAGAAACTCA--T--AATTTTT-GAAA--ATCTGTTGATATGTTTTTTCGAGAAAATCTGAATGGAGCATGATGATGTTATA---TTTCTGATCACTCGGCAGCAA-CTAAACTCT-TACAGACTCTGAGACTGTAACCGATTTCTTAATCATTC-GAAAAAAAAAAAGAAGATT--TTTTTATGAAAAAATTGGAAAGAGTGTTTTAAAAGTGCGAAACC--TCTTGTTACCGCACATAATTTGATAT-ATTAGTT
gi|111079                     :                                                                                                                                                                                                                                                                                    CGTTTCTTGAGGAGGCGATAGAAGTAACAC---ATGAAATTGGTGGACTAACGT---ACGATGGTGTAGGATTACCAA-CAGCGATGAGGAAACGA--CAACTTTTGT-AAAT--GT-TTGTG-TA-TTTTTT---GAAAAATCGGAGTCATGCAAGATGATGTCATAACATTTCT
gi|111080                     :                                                                                                                                                                                                                                                                                                                                                                     GTGGTAAGAAAATAA--A--CCTTTTT-AACT--TG-TGTTGACA-ATTTTT---GGAAAATCTGAGTCGAGCAAGATGATGTCGTAACATCTCTCATCACTC
gi|111081                     :                                                                                                                                                                                                                                                                                                                                                                               AACTA--A--CTTTTT--AACT---T-T-TTGATT-TTTTTT---TTAAAATCTGAGTTGAGCAAGATGATGTCGTAACATTTCTGATCGCTCAACAGCTA-CCAAACTTTAT-CAGACT--------GTAGCAGTTCTCAGAACCATTT-GAGAAATACATGGA--AA---TTTCTGTGGAAACATTGACA
gi|111082                     :                                                                                                                                                                                                                                                                                                                                                                                             TTT-GACTGTAT-TGTTGATA-ATTTTT---GGGAAATCTGAGTCGAGCAAGATGATGCCGTAACATTTCTGATCACTCGGCAGCAA-CCGAA-CCTGTACAAAC----------TAGCCGTTTTCTTGATCATTC-GGGA
gi|111083                     :                                                                                                                                                                                                                                                                                                                                                                                                                                                      GTCGTAACATTTCTGATCGTTTGGCAGCTA-CCGAA-CCTTTATAGACT--------GTAGCGGTTCTCTTTATCATCCGGGGAAATACAAGG-----TCATTTCTGTGGAAACATTG
gi|111084                     :                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CTGATCACTAGGCAGCAA-CCCAACTTTTTACAGACT--------GTAGCCGTTTTCTTGATCTTAC-GGAAAATACAACGA---AC--TTCCGGTCGAAACATTGGAACGAGTGTTTTAAAAGTGCGAAAAATGTCTTGTTATCAAAAATAATTTGATAT-ATCATTTTCTTTTATAAACAACG-ACTCCTTAACATTAT---ATTTTCA-TCCTATTCGGACTTCTGTTGGT----GTAA-AAATGATTTAGTGACGGTTTTATGGTGG-AAAAATCAGCGTAACACTGGAGaaaca
gi|111085                     :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CCGTTTTCTTCATCATTC-GGAAAATACAATGAA------TTTCGATGAAAACATTGTAACGAATGTTTTAAAAGTGTGAAAACTGTCTTGTTACCGA
gi|111085                     :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ACATGATTTAAAAT-ATCATTTTCTTTTAGAAACAACACCGTCCGCAACATTAT---ATTTTCA-TCCTATTCGGTCTTCATCTGGT----GCAA-AAACAATTAAGTGACTATTTTATGGT-G-GAAAATCAGCGTCACGGTttatcttctctcgataagccagtgggatgtctgaaatagtcctacatgatttaaaatatcattttcttttagaaacaacaccgtccgcaacattatattttcatcctattcggtcttcatctggtgcaaaaacaattaagtgactattttatggtggaaaatcagcgtcacggt
gi|111086                     :                                                                                                                                                                                                                                                                                                                                                                                                   ccgttttcttcatcattcggaaaatacaatgaatttcgatgaaaacattgtaacgaatgttttaaaagtgtgaaaactgtcttgttaccgattatcttctctcgataagccagtgggatgtctgaaatagtcctAAATACAAGGA---AT--TTTCTGTGTAAACATTGGCACGAGTGTTTTAAAAGTGCGAAAACTGTCTTGTTACCGAACATAATTTGATTTAATGATTT
gi|111087                     :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  T-ATCAGTTTCTATTATAAACAAAACCCTCTTCAAAATTAT---ATTC--A-CCCTAAACGACCCTTTGCTGATCAATGTAA-AAATGATTTGGTAGCGGTTTTATGGT-G-GCAAGTCAGCGTAACGCTGGAGGA
gi|111088                     :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   AACATTAT---ATTTTTATTCTTATT-AGTCTTTTTCTCAC-----TAACAAATGATTTAGTAACGGATTATTGGT-G-AAAAATCAGTGTAAC
gi|111089                     :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TTTATGGT-G-AAAAATCAGCGTAACGATGGAGGA