lowQualScore : 222 111 1 11111111111 11 111 22222222222
lowQualScore : 4 999 444 444 333 8 7 2 2 22 88888888888 1 77 888 1 2 2 7 000 33333333333 4444 0 4 7
lowQualScore : . ... ... ... ... . . . . .. ........... . .. ... . . . . ... ........... .... . . .
lowQualScore : 8 666 777 777 111 9 6 4 4 22 22222222222 3 66 444 8 0 0 2 888 33333333333 7777 2 7 1
consensus : TGTTTTCGAGCATC---AC---C---TGAATTCGATCACTTCCGAGAAT-TACGAATATCGCGCACGCGTATTTCAACTTCCTGCACAAN-TGGCAAT-ATTTACAAACAG-TATCCACGTGGTCATTGAATGCAATGAAAAATAT-N-AAA---A------ATAATGCTTCCGAT----ACAAGTAAGAAAGT-CAT
Reference ( gi|52968 ) : TGTTTTTGAGTGTC---AC---C---TGAAATCGATCACTTCCCATAAT-TACGAATTTCGTGCACGCGTATTTCAACTTACTGCACAAT-TGGCAAT-ATTTACAAACAG-TATCCACGTGATCATTGAATGCAATGAAAAATAT-C-AAA---A------GTAATGCTTCCGAT----ACAAGTGAGAAAGT-CAT
gi|52970 : TGTTTTCGAGCGTC---AC---C---TGAAATCGATCACTTCCCATAAT-TACGAATATCGCGCAAGCGTATTTCAACTTCATACACTAT-TGGCAAT-ATTTACAAACAG-TATCCACATGGTCATTGAATGCAAAGAAAAATAT-C-AAA---A------ATAATGCTTCCGAT----AGAAGTGAGAAAGT-CAT
gi|52969 : TGTTTTCAAGCATC---AC---C---TGAAATCGATTACATCCCAGAAT-TACGAATATCATGCACGCGTATTTCAACTTTGTGCACAGT-TGGTGAT-ATTTACAAACA--TATCCACTTGGTCAATGAATGCTATGAAAAATAT-A-AAA---A------ATAATGCTTCCGAT----ACACGTAAGAAAGT-CAT
gi|52967 : TGTTTTCAATCACA---AC---C---GGAATTCGATCACTTCCAAGAAT-TATGA--------TATGCGTATTTCAACTTTCTGCACAAT-TAGTAAT-ATTTACAAATAG-TTTTTACGTG-TCATTGAATGCAATGAAAAGTAT-C-AAA---A------ATAGTACTTCCTAT----ACGAGTAAGAAAGT-CAT
gi|52972 : TGTTTTCGAGCGTA---AC---C---TGAAATCGACCAATTCCCATAAT-TACGAATATCG-------------------------CAAT-TGGCAAT-ATTCACAAACAG-TATCCACGGGGTCTTTGAATACAAAGAAAAATATAA-AAA---A------ATAATGCTTCCGAT----ACAAGTGAGAAAGT-
gi|52971 : TGATTTTGA---TCCCGAC---C---TGAATTCAATCACTTCCGAAAAT-TATGAATATCGCACACGCGCATTACAACTTCCTGCACAAT-TGGCAAT-ATTTACAAATAGTTAT-CGCGTGGTCATTGAATGCAATGAGGAATAT-A-AAA---A------ATAATGTTT
gi|52973 : TGTTTTCG--T-TC---ACAGTC---TGAATTCGATCTCTTCGGAGAAC-TACGAATATCGCACAAACGTATTTCAGCTTCATGCACAAA--GGTTAT-A---ACAAATGT-TATCCACGTGGTCATTGAAAGCAGTAAAAACTAT-C-AAA---A------ATAATGTTTCCTGT----CCAAGTAAGAAAGT-
gi|52974 : TGTTTTCGATCACA---AC---C---TGATTTCACTTACTTCAGAGATT-TACAAAT--AATGCACATATATTGCAACATCCTGCA--------------TTCTCAAACAG-TATCCATGTGGTCATCAAATGCAATGAAAAATAT-A-AAA---A------ATAATTCTACCAAT----ACAAGAAAGACAGT-CATgctgaaaaattgta
gi|52965 : TGTTTTCAA---TC---AC---CAGGTGAATTTGATCACTTCCAAGAAT-T-----TTTC------------TTC--CCTG-TGCACA---TGTCATT-ATTTACAAACAG-TTGCCACTTGTTCGTTGAATGCGATAAGAATTAT-C-AAAATCA------ATAATGCTTTCGAT----ACAGGGAAGATAGTGCAT
gi|52964 : gTGTTTTCAA---TC---AC---CAGGTGAATTTGATCACTTCCAAGAAT-T-----TTTC------------TTC--CCTG-TGCACA---TGTCATT-ATTTACAAACAG-TTGCCACTTGTTCGTTGAATGCGATAAGAATTAT-C-AAAATCA------ATAATGCTTTCGAT----ACAGGGAAGATAGTGCATagttgtaaatgttgccttcaaaggtgaataaatataggtagctgaatacagttt
gi|52963 : gTGTTTTCAA---TC---AC---CAGGTGAATTTGATCACTTCCAAGAAT-T-----TTTC------------TTC--CCTG-TGCACA---TGTCATT-ATTTACAAACAG-TTGCCACTTGTTCGTTGAATGCGATAAGAATTAT-C-AAAATCA------ATAATGCTTTCGAT----ACAGGGAAGATAGTGCATagttgtaaatgttgccttcaaaggtgaataaatataggtagctgaatacagttt
gi|52966 : gTGTTTTCAATCACA---AC---C---TGAATTTGATCACTTCCGAGAAT-CACG---------CATGCATATTTCATCTTCCTGCACAAA-TATCAAT-ATTTAAAAAAAG-TATCCACATGagttgtaaatgttgccttcaaaggtgaataaatataggtagctgaatacagttt
gi|52976 : gGTTTTCGAGCATC---AC---C---TGAAATCGACCACATCCCAGAAT-TACGTATATCGTGCACAAGTATTTCAACTTCCTACACAAT-TGGTAAT-ATTTACAAAAAG-TATCCACGTTATCATTGAATGCAATGAAAAA------AAA---AATAATCATAATGCTTCCGAT----ACACGTAAGAAAGT-CATtttttga
gi|52975 : GTTTTCGAGCATC---AC---C---TGAAATCGACCACATCCCAGAAT-TACGTATATCGTGCACAAGTATTTCAACTTCCTACACAAT-TGGTAAT-ATTTACAAAAAG-TATCCACGTTATCATTGAATGCAATGAAAAA------AAA---AATAATCATAATGCTTCCGAT----ACACGTAAGAAAGT-CATtttatgatacaaacctgaacaaatgta
gi|52977 : ---AC---C---AGAATTCGATCACTTCCGAGAAT-TATGAATATCGCGCAAGCGTATTTCGACTTCCAGCACAAT-TGGCAAT-A-TTACAAATAG-TATCCACGTGATCATTGAATGGAGTGTTAAATATAG-AAA---A------ATAATGCTTCCGAT----ATAAGTAAGAAAGT-CATtttatgatacaaacctgaacaaatgta
gi|52978 : tttcgatcacg---AC---C---TGAATTCGATCACTTTCGAGAAAATACGATTATCGCGCACATGTATTTTAACTTCCTGTATAAA-TGTCAAT-ATTTACAAATAG-TACCCACGTGGTCATTGAATGCATTGAATGTTAT-CTAAC---A--------AATGCTTCTGAT----AAAAGTAAGAAAGT-
gi|52979 : tcaca---TGAATTCGATCACTTCCGAGAAT-TATGAATATTGCGCAAGGGTAT--CAACTTCCTGCACAAAATATCAATGATTT-CAAACAG-TATCCATATGGGCATTGAATGCAATGATGAATAT-A-GAA---T------ATAATGTCTCCGGT----ATAAGTAAGAAAGT-CAT
gi|52980 : TCGATCACTTCCAAAAAT-TATGAATGTCATACGTGCGTAAT-CAACTTCCACCACAAA-GGTCAAT-ATTTACAAACAG-TATATACATGGTCAGTGAATGCAATGAAAAATAT-A-TAA---A------ATAATGCTTCAGGT----ACA----GGAAAGT-TAttgt
gi|52981 : TTCAAATTCCTTTACAAA-TGTCAAT-ATATACAAACAG-TATCCACGTGGTCATTGACTGCAATTAAAAATGT-A-AAA---A------ATAATGCTTCGAATGAAAACAAGTAA
gi|52982 : tccaagc-TGGCAAT-ATTTACAAAAAG-TATCCACATGGTCATTGAATGCAATGAAAAATAT-C-AAA---A------ATAATGCTTTTGAT----ACAAGTAAGAAAGT-CATttaattaaaaaggtgtgctataagaagtggata
gi|52983 : T-GTTTACAAACAG-TATCTACGTGGTCATTGAATGCAATGAAAAAT-------A---A------ATAATGCTTTCGAT----ACAAGTAAGAAAGT-CATtttatgatacagagctgaaaaaatgta
Alignments
lowQualScore : 111111111
lowQualScore : 5 1 0 2 2 0 0 11 555 0 33 1 1 1 55 444444444 4444 7
lowQualScore : . . . . . . . .. ... . .. . . . .. ......... .... .
lowQualScore : 0 7 2 8 2 5 5 99 888 8 77 2 9 9 77 000000000 5555 1
consensus : TGTTTTCGATCACCACCTGAATTCGATCACTTCCGAGAAT-TACGAATATCGCGCACGCGTATTTCAACTTCCTGCACAAN-TGGCAAT-ATTTACAAACAG-TATCCACGTGGTCATTGAATGCAATGAAAAATAT-NAAA---A-----ATAATGCTTCCGAT----ACAAGTAAGAAAGT-CAT
Reference ( family-790 ) : TGTTTTCGAGCATCACCTGAATTCGATCACTTCCGAGAAT-TACGAATATCGCGCACGCGTATTTCAACTTCCTGCACAAN-TGGCAAT-ATTTACAAACAG-TATCCACGTGGTCATTGAATGCAATGAAAAATAT-NAAA---A-----ATAATGCTTCCGAT----ACAAGTAAGAAAGT-CAT
gi|52963 : TGTTTTCAATCACCAGGTGAATTTGATCACTTCCAAGAAT-T--------------------TTTC--TTCCCTGTGCACA-TGTCATT-ATTTACAAACAG-TTGCCACTTGTTCGTTGAATGCGATAAGAATTAT-CAAAATCA-----ATAATGCTTTCGAT----ACAGGGAAGATAGTGCAT
gi|52964 : gTGTTTTCAATCACCAGGTGAATTTGATCACTTCCAAGAAT-T--------------------TTTC--TTCCCTGTGCACA-TGTCATT-ATTTACAAACAG-TTGCCACTTGTTCGTTGAATGCGATAAGAATTAT-CAAAATCA-----ATAATGCTTTCGAT----ACAGGGAAGATAGTGCATagttgtaaatgttgccttcaaaggtgaataaatataggtagctgaatacagttt
gi|52965 : gTGTTTTCAATCACCAGGTGAATTTGATCACTTCCAAGAAT-T--------------------TTTC--TTCCCTGTGCACA-TGTCATT-ATTTACAAACAG-TTGCCACTTGTTCGTTGAATGCGATAAGAATTAT-CAAAATCA-----ATAATGCTTTCGAT----ACAGGGAAGATAGTGCATagttgtaaatgttgccttcaaaggtgaataaatataggtagctgaatacagttt
gi|52966 : gTGTTTTCAATCACAACCTGAATTTGATCACTTCCGAGAAT----------CACGCATGCATATTTCATCTTCCTGCACAAA-TATCAAT-ATTTAAAAAAAG-TATCCACATGagttgtaaatgttgccttcaaaggtgaataaatataggtagctgaatacagttt
gi|52967 : gTGTTTTCAATCACAACCGGAATTCGATCACTTCCAAGAAT-TATGA-TAT-------GCGTATTTCAACTTTCTGCACAAT-TAGTAAT-ATTTACAAATAG-TTTTTACGTG-TCATTGAATGCAATGAAAAGTAT-CAAA---A-----ATAGTACTTCCTAT----ACGAGTAAGAAAGT-CATtttttga
gi|52968 : TGTTTTTGAGTGTCACCTGAAATCGATCACTTCCCATAAT-TACGAATTTCGTGCACGCGTATTTCAACTTACTGCACAAT-TGGCAAT-ATTTACAAACAG-TATCCACGTGATCATTGAATGCAATGAAAAATAT-CAAA---A-----GTAATGCTTCCGAT----ACAAGTGAGAAAGT-CAT
gi|52969 : TGTTTTCAAGCATCACCTGAAATCGATTACATCCCAGAAT-TACGAATATCATGCACGCGTATTTCAACTTTGTGCACAGT-TGGTGAT-ATTTACAAACA--TATCCACTTGGTCAATGAATGCTATGAAAAATAT-AAAA---A-----ATAATGCTTCCGAT----ACACGTAAGAAAGT-CAT
gi|52970 : TGTTTTCGAGCGTCACCTGAAATCGATCACTTCCCATAAT-TACGAATATCGCGCAAGCGTATTTCAACTTCATACACTAT-TGGCAAT-ATTTACAAACAG-TATCCACATGGTCATTGAATGCAAAGAAAAATAT-CAAA---A-----ATAATGCTTCCGAT----AGAAGTGAGAAAGT-CAT
gi|52971 : TGATTTTGATCCCGACCTGAATTCAATCACTTCCGAAAAT-TATGAATATCGCACACGCGCATTACAACTTCCTGCACAAT-TGGCAAT-ATTTACAAATAGTTAT-CGCGTGGTCATTGAATGCAATGAGGAATAT-AAAA---A-----ATAATGTTT
gi|52972 : TGTTTTCGAGCGTAACCTGAAATCGACCAATTCCCATAAT-TACGAATATCGC-------------------------AAT-TGGCAAT-ATTCACAAACAG-TATCCACGGGGTCTTTGAATACAAAGAAAAATATAAAAA---A-----ATAATGCTTCCGAT----ACAAGTGAGAAAGT-
gi|52973 : TGTTTTCGTTCACAGTCTGAATTCGATCTCTTCGGAGAAC-TACGAATATCGCACAAACGTATTTCAGCTTCATGCACAAA--GGTTAT-A---ACAAATGT-TATCCACGTGGTCATTGAAAGCAGTAAAAACTAT-CAAA---A-----ATAATGTTTCCTGT----CCAAGTAAGAAAGT-
gi|52974 : TGTTTTCGATCACAACCTGATTTCACTTACTTCAGAGATT-TACAAATA--ATGCACATATATTGCAACATCCTGCA--------------TTCTCAAACAG-TATCCATGTGGTCATCAAATGCAATGAAAAATAT-AAAA---A-----ATAATTCTACCAAT----ACAAGAAAGACAGT-CATgctgaaaaattgta
gi|52975 : GTTTTCGAGCATCACCTGAAATCGACCACATCCCAGAAT-TACGTATATCGTGCACAAGTATTTCAACTTCCTACACAAT-TGGTAAT-ATTTACAAAAAG-TATCCACGTTATCATTGAATGCAATGAAAAA----AAAA---ATAATCATAATGCTTCCGAT----ACACGTAAGAAAGT-CAT
gi|52976 : GTTTTCGAGCATCACCTGAAATCGACCACATCCCAGAAT-TACGTATATCGTGCACAAGTATTTCAACTTCCTACACAAT-TGGTAAT-ATTTACAAAAAG-TATCCACGTTATCATTGAATGCAATGAAAAA----AAAA---ATAATCATAATGCTTCCGAT----ACACGTAAGAAAGT-CATtttatgatacaaacctgaacaaatgta
gi|52977 : TTTCGATCACGACCAGAATTCGATCACTTCCGAGAAT-TATGAATATCGCGCAAGCGTATTTCGACTTCCAGCACAAT-TGGCAAT-A-TTACAAATAG-TATCCACGTGATCATTGAATGGAGTGTTAAATATAGAAA---A-----ATAATGCTTCCGAT----ATAAGTAAGAAAGT-CATtttatgatacaaacctgaacaaatgta
gi|52978 : ACCTGAATTCGATCACTTTCGAGAAAATACGATTATCGCGCACATGTATTTTAACTTCCTGTATAAA-TGTCAAT-ATTTACAAATAG-TACCCACGTGGTCATTGAATGCATTGAATGTTAT-CTAA---C-----A-AATGCTTCTGAT----AAAAGTAAGAAAGT-
gi|52979 : tcacaTGAATTCGATCACTTCCGAGAAT-TATGAATATTGCGCAAGGGTAT--CAACTTCCTGCACAAAATATCAATGATTT-CAAACAG-TATCCATATGGGCATTGAATGCAATGATGAATAT-AGAA---T-----ATAATGTCTCCGGT----ATAAGTAAGAAAGT-CAT
gi|52980 : TCGATCACTTCCAAAAAT-TATGAATGTCATACGTGCGTAAT-CAACTTCCACCACAAA-GGTCAAT-ATTTACAAACAG-TATATACATGGTCAGTGAATGCAATGAAAAATAT-ATAA---A-----ATAATGCTTCAGGT----ACAGGAAAGttgt
gi|52981 : TTCAAATTCCTTTACAAA-TGTCAAT-ATATACAAACAG-TATCCACGTGGTCATTGACTGCAATTAAAAATGT-AAAA---A-----ATAATGCTTCGAATGAAAACAAGTAAtta
gi|52982 : tccaagc-TGGCAAT-ATTTACAAAAAG-TATCCACATGGTCATTGAATGCAATGAAAAATAT-CAAA---A-----ATAATGCTTTTGAT----ACAAGTAAGAAAGT-CATttaattaaaaaggtgtgctataagaagtggata
gi|52983 : T-GTTTACAAACAG-TATCTACGTGGTCATTGAATGCAATGAAAAAT------A---A-----ATAATGCTTTCGAT----ACAAGTAAGAAAGT-CATtttatgatacagagctgaaaaaatgta
Alignments
lowQualScore : 111111111
lowQualScore : 2 0 2 2 0 0 11 555 0 33 1 1 1 55 444444444 4444 7
lowQualScore : . . . . . . .. ... . .. . . . .. ......... .... .
lowQualScore : 5 2 8 2 5 5 99 888 8 77 2 9 9 77 000000000 5555 1
consensus : TGTTTTCGATCACNACCTGAATTCGATCACTTCCGAGAAT-TACGAATATCGCGCACGCGTATTTCAACTTCCTGCACAAN-TGGCAAT-ATTTACAAACAG-TATCCACGTGGTCATTGAATGCAATGAAAAATAT-NAAA---A-----ATAATGCTTCCGAT----ACAAGTAAGAAAGT-CAT
Reference ( family-790 ) : TGTTTTCGATCACCACCTGAATTCGATCACTTCCGAGAAT-TACGAATATCGCGCACGCGTATTTCAACTTCCTGCACAAN-TGGCAAT-ATTTACAAACAG-TATCCACGTGGTCATTGAATGCAATGAAAAATAT-NAAA---A-----ATAATGCTTCCGAT----ACAAGTAAGAAAGT-CAT
gi|52963 : TGTTTTCAATCACCAGGTGAATTTGATCACTTCCAAGAAT-T--------------------TTTC--TTCCCTGTGCACA-TGTCATT-ATTTACAAACAG-TTGCCACTTGTTCGTTGAATGCGATAAGAATTAT-CAAAATCA-----ATAATGCTTTCGAT----ACAGGGAAGATAGTGCAT
gi|52964 : gTGTTTTCAATCACCAGGTGAATTTGATCACTTCCAAGAAT-T--------------------TTTC--TTCCCTGTGCACA-TGTCATT-ATTTACAAACAG-TTGCCACTTGTTCGTTGAATGCGATAAGAATTAT-CAAAATCA-----ATAATGCTTTCGAT----ACAGGGAAGATAGTGCATagttgtaaatgttgccttcaaaggtgaataaatataggtagctgaatacagttt
gi|52965 : gTGTTTTCAATCACCAGGTGAATTTGATCACTTCCAAGAAT-T--------------------TTTC--TTCCCTGTGCACA-TGTCATT-ATTTACAAACAG-TTGCCACTTGTTCGTTGAATGCGATAAGAATTAT-CAAAATCA-----ATAATGCTTTCGAT----ACAGGGAAGATAGTGCATagttgtaaatgttgccttcaaaggtgaataaatataggtagctgaatacagttt
gi|52966 : gTGTTTTCAATCACAACCTGAATTTGATCACTTCCGAGAAT----------CACGCATGCATATTTCATCTTCCTGCACAAA-TATCAAT-ATTTAAAAAAAG-TATCCACATGagttgtaaatgttgccttcaaaggtgaataaatataggtagctgaatacagttt
gi|52967 : gTGTTTTCAATCACAACCGGAATTCGATCACTTCCAAGAAT-TATGA-TAT-------GCGTATTTCAACTTTCTGCACAAT-TAGTAAT-ATTTACAAATAG-TTTTTACGTG-TCATTGAATGCAATGAAAAGTAT-CAAA---A-----ATAGTACTTCCTAT----ACGAGTAAGAAAGT-CATtttttga
gi|52968 : TGTTTTTGAGTGTCACCTGAAATCGATCACTTCCCATAAT-TACGAATTTCGTGCACGCGTATTTCAACTTACTGCACAAT-TGGCAAT-ATTTACAAACAG-TATCCACGTGATCATTGAATGCAATGAAAAATAT-CAAA---A-----GTAATGCTTCCGAT----ACAAGTGAGAAAGT-CAT
gi|52969 : TGTTTTCAAGCATCACCTGAAATCGATTACATCCCAGAAT-TACGAATATCATGCACGCGTATTTCAACTTTGTGCACAGT-TGGTGAT-ATTTACAAACA--TATCCACTTGGTCAATGAATGCTATGAAAAATAT-AAAA---A-----ATAATGCTTCCGAT----ACACGTAAGAAAGT-CAT
gi|52970 : TGTTTTCGAGCGTCACCTGAAATCGATCACTTCCCATAAT-TACGAATATCGCGCAAGCGTATTTCAACTTCATACACTAT-TGGCAAT-ATTTACAAACAG-TATCCACATGGTCATTGAATGCAAAGAAAAATAT-CAAA---A-----ATAATGCTTCCGAT----AGAAGTGAGAAAGT-CAT
gi|52971 : TGATTTTGATCCCGACCTGAATTCAATCACTTCCGAAAAT-TATGAATATCGCACACGCGCATTACAACTTCCTGCACAAT-TGGCAAT-ATTTACAAATAGTTAT-CGCGTGGTCATTGAATGCAATGAGGAATAT-AAAA---A-----ATAATGTTT
gi|52972 : TGTTTTCGAGCGTAACCTGAAATCGACCAATTCCCATAAT-TACGAATATCGC-------------------------AAT-TGGCAAT-ATTCACAAACAG-TATCCACGGGGTCTTTGAATACAAAGAAAAATATAAAAA---A-----ATAATGCTTCCGAT----ACAAGTGAGAAAGT-
gi|52973 : TGTTTTCGTTCACAGTCTGAATTCGATCTCTTCGGAGAAC-TACGAATATCGCACAAACGTATTTCAGCTTCATGCACAAA--GGTTAT-A---ACAAATGT-TATCCACGTGGTCATTGAAAGCAGTAAAAACTAT-CAAA---A-----ATAATGTTTCCTGT----CCAAGTAAGAAAGT-
gi|52974 : TGTTTTCGATCACAACCTGATTTCACTTACTTCAGAGATT-TACAAATA--ATGCACATATATTGCAACATCCTGCA--------------TTCTCAAACAG-TATCCATGTGGTCATCAAATGCAATGAAAAATAT-AAAA---A-----ATAATTCTACCAAT----ACAAGAAAGACAGT-CATgctgaaaaattgta
gi|52975 : GTTTTCGAGCATCACCTGAAATCGACCACATCCCAGAAT-TACGTATATCGTGCACAAGTATTTCAACTTCCTACACAAT-TGGTAAT-ATTTACAAAAAG-TATCCACGTTATCATTGAATGCAATGAAAAA----AAAA---ATAATCATAATGCTTCCGAT----ACACGTAAGAAAGT-CAT
gi|52976 : GTTTTCGAGCATCACCTGAAATCGACCACATCCCAGAAT-TACGTATATCGTGCACAAGTATTTCAACTTCCTACACAAT-TGGTAAT-ATTTACAAAAAG-TATCCACGTTATCATTGAATGCAATGAAAAA----AAAA---ATAATCATAATGCTTCCGAT----ACACGTAAGAAAGT-CATtttatgatacaaacctgaacaaatgta
gi|52977 : TTTCGATCACGACCAGAATTCGATCACTTCCGAGAAT-TATGAATATCGCGCAAGCGTATTTCGACTTCCAGCACAAT-TGGCAAT-A-TTACAAATAG-TATCCACGTGATCATTGAATGGAGTGTTAAATATAGAAA---A-----ATAATGCTTCCGAT----ATAAGTAAGAAAGT-CATtttatgatacaaacctgaacaaatgta
gi|52978 : TCACAACCTGAATTCGATCACTTTCGAGAAAATACGATTATCGCGCACATGTATTTTAACTTCCTGTATAAA-TGTCAAT-ATTTACAAATAG-TACCCACGTGGTCATTGAATGCATTGAATGTTAT-CTAA---C-----A-AATGCTTCTGAT----AAAAGTAAGAAAGT-
gi|52979 : TGAATTCGATCACTTCCGAGAAT-TATGAATATTGCGCAAGGGTAT--CAACTTCCTGCACAAAATATCAATGATTT-CAAACAG-TATCCATATGGGCATTGAATGCAATGATGAATAT-AGAA---T-----ATAATGTCTCCGGT----ATAAGTAAGAAAGT-CAT
gi|52980 : TCGATCACTTCCAAAAAT-TATGAATGTCATACGTGCGTAAT-CAACTTCCACCACAAA-GGTCAAT-ATTTACAAACAG-TATATACATGGTCAGTGAATGCAATGAAAAATAT-ATAA---A-----ATAATGCTTCAGGT----ACAGGAAAGttgt
gi|52981 : TTCAAATTCCTTTACAAA-TGTCAAT-ATATACAAACAG-TATCCACGTGGTCATTGACTGCAATTAAAAATGT-AAAA---A-----ATAATGCTTCGAATGAAAACAAGTAAtta
gi|52982 : tccaagc-TGGCAAT-ATTTACAAAAAG-TATCCACATGGTCATTGAATGCAATGAAAAATAT-CAAA---A-----ATAATGCTTTTGAT----ACAAGTAAGAAAGT-CATttaattaaaaaggtgtgctataagaagtggata
gi|52983 : T-GTTTACAAACAG-TATCTACGTGGTCATTGAATGCAATGAAAAAT------A---A-----ATAATGCTTTCGAT----ACAAGTAAGAAAGT-CATtttatgatacagagctgaaaaaatgta
Alignments
lowQualScore : 111111111
lowQualScore : 1 0 2 2 0 0 11 555 0 33 1 1 1 55 444444444 4444 7
lowQualScore : . . . . . . .. ... . .. . . . .. ......... .... .
lowQualScore : 0 2 8 2 5 5 99 888 8 77 2 9 9 77 000000000 5555 1
consensus : TGTTTTCGATCACNACCTGAATTCGATCACTTCCGAGAAT-TACGAATATCGCGCACGCGTATTTCAACTTCCTGCACAAN-TGGCAAT-ATTTACAAACAG-TATCCACGTGGTCATTGAATGCAATGAAAAATAT-NAAA---A-----ATAATGCTTCCGAT----ACAAGTAAGAAAGT-CAT
Reference ( family-790 ) : TGTTTTCGATCACNACCTGAATTCGATCACTTCCGAGAAT-TACGAATATCGCGCACGCGTATTTCAACTTCCTGCACAAN-TGGCAAT-ATTTACAAACAG-TATCCACGTGGTCATTGAATGCAATGAAAAATAT-NAAA---A-----ATAATGCTTCCGAT----ACAAGTAAGAAAGT-CAT
gi|52963 : TGTTTTCAATCACCAGGTGAATTTGATCACTTCCAAGAAT-T--------------------TTTC--TTCCCTGTGCACA-TGTCATT-ATTTACAAACAG-TTGCCACTTGTTCGTTGAATGCGATAAGAATTAT-CAAAATCA-----ATAATGCTTTCGAT----ACAGGGAAGATAGTGCAT
gi|52964 : gTGTTTTCAATCACCAGGTGAATTTGATCACTTCCAAGAAT-T--------------------TTTC--TTCCCTGTGCACA-TGTCATT-ATTTACAAACAG-TTGCCACTTGTTCGTTGAATGCGATAAGAATTAT-CAAAATCA-----ATAATGCTTTCGAT----ACAGGGAAGATAGTGCATagttgtaaatgttgccttcaaaggtgaataaatataggtagctgaatacagttt
gi|52965 : gTGTTTTCAATCACCAGGTGAATTTGATCACTTCCAAGAAT-T--------------------TTTC--TTCCCTGTGCACA-TGTCATT-ATTTACAAACAG-TTGCCACTTGTTCGTTGAATGCGATAAGAATTAT-CAAAATCA-----ATAATGCTTTCGAT----ACAGGGAAGATAGTGCATagttgtaaatgttgccttcaaaggtgaataaatataggtagctgaatacagttt
gi|52966 : gTGTTTTCAATCACAACCTGAATTTGATCACTTCCGAGAAT----------CACGCATGCATATTTCATCTTCCTGCACAAA-TATCAAT-ATTTAAAAAAAG-TATCCACATGagttgtaaatgttgccttcaaaggtgaataaatataggtagctgaatacagttt
gi|52967 : gTGTTTTCAATCACAACCGGAATTCGATCACTTCCAAGAAT-TATGA-TAT-------GCGTATTTCAACTTTCTGCACAAT-TAGTAAT-ATTTACAAATAG-TTTTTACGTG-TCATTGAATGCAATGAAAAGTAT-CAAA---A-----ATAGTACTTCCTAT----ACGAGTAAGAAAGT-CATtttttga
gi|52968 : TGTTTTTGAGTGTCACCTGAAATCGATCACTTCCCATAAT-TACGAATTTCGTGCACGCGTATTTCAACTTACTGCACAAT-TGGCAAT-ATTTACAAACAG-TATCCACGTGATCATTGAATGCAATGAAAAATAT-CAAA---A-----GTAATGCTTCCGAT----ACAAGTGAGAAAGT-CAT
gi|52969 : TGTTTTCAAGCATCACCTGAAATCGATTACATCCCAGAAT-TACGAATATCATGCACGCGTATTTCAACTTTGTGCACAGT-TGGTGAT-ATTTACAAACA--TATCCACTTGGTCAATGAATGCTATGAAAAATAT-AAAA---A-----ATAATGCTTCCGAT----ACACGTAAGAAAGT-CAT
gi|52970 : TGTTTTCGAGCGTCACCTGAAATCGATCACTTCCCATAAT-TACGAATATCGCGCAAGCGTATTTCAACTTCATACACTAT-TGGCAAT-ATTTACAAACAG-TATCCACATGGTCATTGAATGCAAAGAAAAATAT-CAAA---A-----ATAATGCTTCCGAT----AGAAGTGAGAAAGT-CAT
gi|52971 : TGATTTTGATCCCGACCTGAATTCAATCACTTCCGAAAAT-TATGAATATCGCACACGCGCATTACAACTTCCTGCACAAT-TGGCAAT-ATTTACAAATAGTTAT-CGCGTGGTCATTGAATGCAATGAGGAATAT-AAAA---A-----ATAATGTTT
gi|52972 : TGTTTTCGAGCGTAACCTGAAATCGACCAATTCCCATAAT-TACGAATATCGC-------------------------AAT-TGGCAAT-ATTCACAAACAG-TATCCACGGGGTCTTTGAATACAAAGAAAAATATAAAAA---A-----ATAATGCTTCCGAT----ACAAGTGAGAAAGT-
gi|52973 : TGTTTTCGTTCACAGTCTGAATTCGATCTCTTCGGAGAAC-TACGAATATCGCACAAACGTATTTCAGCTTCATGCACAAA--GGTTAT-A---ACAAATGT-TATCCACGTGGTCATTGAAAGCAGTAAAAACTAT-CAAA---A-----ATAATGTTTCCTGT----CCAAGTAAGAAAGT-
gi|52974 : TGTTTTCGATCACAACCTGATTTCACTTACTTCAGAGATT-TACAAATA--ATGCACATATATTGCAACATCCTGCA--------------TTCTCAAACAG-TATCCATGTGGTCATCAAATGCAATGAAAAATAT-AAAA---A-----ATAATTCTACCAAT----ACAAGAAAGACAGT-CATgctgaaaaattgta
gi|52975 : GTTTTCGAGCATCACCTGAAATCGACCACATCCCAGAAT-TACGTATATCGTGCACAAGTATTTCAACTTCCTACACAAT-TGGTAAT-ATTTACAAAAAG-TATCCACGTTATCATTGAATGCAATGAAAAA----AAAA---ATAATCATAATGCTTCCGAT----ACACGTAAGAAAGT-CAT
gi|52976 : GTTTTCGAGCATCACCTGAAATCGACCACATCCCAGAAT-TACGTATATCGTGCACAAGTATTTCAACTTCCTACACAAT-TGGTAAT-ATTTACAAAAAG-TATCCACGTTATCATTGAATGCAATGAAAAA----AAAA---ATAATCATAATGCTTCCGAT----ACACGTAAGAAAGT-CATtttatgatacaaacctgaacaaatgta
gi|52977 : TTTCGATCACGACCAGAATTCGATCACTTCCGAGAAT-TATGAATATCGCGCAAGCGTATTTCGACTTCCAGCACAAT-TGGCAAT-A-TTACAAATAG-TATCCACGTGATCATTGAATGGAGTGTTAAATATAGAAA---A-----ATAATGCTTCCGAT----ATAAGTAAGAAAGT-CATtttatgatacaaacctgaacaaatgta
gi|52978 : TCACAACCTGAATTCGATCACTTTCGAGAAAATACGATTATCGCGCACATGTATTTTAACTTCCTGTATAAA-TGTCAAT-ATTTACAAATAG-TACCCACGTGGTCATTGAATGCATTGAATGTTAT-CTAA---C-----A-AATGCTTCTGAT----AAAAGTAAGAAAGT-
gi|52979 : TGAATTCGATCACTTCCGAGAAT-TATGAATATTGCGCAAGGGTAT--CAACTTCCTGCACAAAATATCAATGATTT-CAAACAG-TATCCATATGGGCATTGAATGCAATGATGAATAT-AGAA---T-----ATAATGTCTCCGGT----ATAAGTAAGAAAGT-CAT
gi|52980 : TCGATCACTTCCAAAAAT-TATGAATGTCATACGTGCGTAAT-CAACTTCCACCACAAA-GGTCAAT-ATTTACAAACAG-TATATACATGGTCAGTGAATGCAATGAAAAATAT-ATAA---A-----ATAATGCTTCAGGT----ACAGGAAAGttgt
gi|52981 : TTCAAATTCCTTTACAAA-TGTCAAT-ATATACAAACAG-TATCCACGTGGTCATTGACTGCAATTAAAAATGT-AAAA---A-----ATAATGCTTCGAATGAAAACAAGTAAtta
gi|52982 : tccaagc-TGGCAAT-ATTTACAAAAAG-TATCCACATGGTCATTGAATGCAATGAAAAATAT-CAAA---A-----ATAATGCTTTTGAT----ACAAGTAAGAAAGT-CATttaattaaaaaggtgtgctataagaagtggata
gi|52983 : T-GTTTACAAACAG-TATCTACGTGGTCATTGAATGCAATGAAAAAT------A---A-----ATAATGCTTTCGAT----ACAAGTAAGAAAGT-CATtttatgatacagagctgaaaaaatgta
blockSeqs : C A A CG TGC AA T G T AA ATAATC GAAA G
blockSeqs : C A . TG CGC A T . . AG ATAATC . G
blockSeqs : A G . TG CGC A T . . C ATCA . .
blockSeqs : A A . CG AGC A G . . C ATCA . .
blockSeqs : C C . CA CGC T G . . C A . .
blockSeqs : C C . CA AAC T G . . C A . .
blockSeqs : C C . TG CAT T G . . A A . .
blockSeqs : G G . TG CAA T G . . C A . .
blockSeqs : A C . TG CAA T G . . A A . .
blockSeqs : A G . CG AGC T G . . C A . .
blockSeqs : A G . CG CAT A G . . A A . .
blockSeqs : C C . CG AGG T G . . A A . .
blockSeqs : C C . TA TGC T G . . A A . .
blockSeqs : G G . C GC T T . . C C . .
blockSeqs : A G . . . A T . . A T . .
blockSeqs : G . . . A T . . A A . .
blockSeqs : A . . . A T . . A A .
blockSeqs : . G . . C A .
blockSeqs : . . . . A
blockSeqs : . .
blockSeqCons : CG CGC A********
originalCons : TGTTTTCGATCACNACCTGAATTCGATCACTTCCGAGAAT-TACGAATATCGCGCACGCGTATTTCAACTTCCTGCACAAN-TGGCAAT-ATTTACAAACAG-TATCCACGTGGTCATTGAATGCAATGAAAAATAT-NAAA---A-----ATAATGCTTCCGAT----ACAAGTAAGAAAGT-CAT
finalCons : TGTTTTCGATCACNACCTGAATTCGATCACTTCCGAGAAT-TACGAATATCGCGCACGCGTATTTCAACTTCCTGCACAAN-TGGCAAT-ATTTACAAACAG-TATCCACGTGGTCATTGAATGCAATGAAAAATAT-NAAAA--------ATAATGCTTCCGAT----ACAAGTAAGAAAGT-CAT
Alignments
lowQualScore : 111111111
lowQualScore : 1 0 2 2 0 0 11 555 0 33 1 1 1 55 444444444 4444 7
lowQualScore : . . . . . . .. ... . .. . . . .. ......... .... .
lowQualScore : 0 2 8 2 5 5 99 888 8 77 2 9 9 77 000000000 5555 1
consensus : TGTTTTCGATCACNACCTGAATTCGATCACTTCCGAGAAT-TACGAATATCGCGCACGCGTATTTCAACTTCCTGCACAAN-TGGCAAT-ATTTACAAACAG-TATCCACGTGGTCATTGAATGCAATGAAAAATAT-NAAA---A-----ATAATGCTTCCGAT----ACAAGTAAGAAAGT-CAT
Reference ( family-790 ) : TGTTTTCGATCACNACCTGAATTCGATCACTTCCGAGAAT-TACGAATATCGCGCACGCGTATTTCAACTTCCTGCACAAN-TGGCAAT-ATTTACAAACAG-TATCCACGTGGTCATTGAATGCAATGAAAAATAT-NAAA---A-----ATAATGCTTCCGAT----ACAAGTAAGAAAGT-CAT
gi|52963 : TGTTTTCAATCACCAGGTGAATTTGATCACTTCCAAGAAT-T--------------------TTTC--TTCCCTGTGCACA-TGTCATT-ATTTACAAACAG-TTGCCACTTGTTCGTTGAATGCGATAAGAATTAT-CAAAATCA-----ATAATGCTTTCGAT----ACAGGGAAGATAGTGCAT
gi|52964 : gTGTTTTCAATCACCAGGTGAATTTGATCACTTCCAAGAAT-T--------------------TTTC--TTCCCTGTGCACA-TGTCATT-ATTTACAAACAG-TTGCCACTTGTTCGTTGAATGCGATAAGAATTAT-CAAAATCA-----ATAATGCTTTCGAT----ACAGGGAAGATAGTGCATagttgtaaatgttgccttcaaaggtgaataaatataggtagctgaatacagttt
gi|52965 : gTGTTTTCAATCACCAGGTGAATTTGATCACTTCCAAGAAT-T--------------------TTTC--TTCCCTGTGCACA-TGTCATT-ATTTACAAACAG-TTGCCACTTGTTCGTTGAATGCGATAAGAATTAT-CAAAATCA-----ATAATGCTTTCGAT----ACAGGGAAGATAGTGCATagttgtaaatgttgccttcaaaggtgaataaatataggtagctgaatacagttt
gi|52966 : gTGTTTTCAATCACAACCTGAATTTGATCACTTCCGAGAAT----------CACGCATGCATATTTCATCTTCCTGCACAAA-TATCAAT-ATTTAAAAAAAG-TATCCACATGagttgtaaatgttgccttcaaaggtgaataaatataggtagctgaatacagttt
gi|52967 : gTGTTTTCAATCACAACCGGAATTCGATCACTTCCAAGAAT-TATGA-TAT-------GCGTATTTCAACTTTCTGCACAAT-TAGTAAT-ATTTACAAATAG-TTTTTACGTG-TCATTGAATGCAATGAAAAGTAT-CAAA---A-----ATAGTACTTCCTAT----ACGAGTAAGAAAGT-CATtttttga
gi|52968 : TGTTTTTGAGTGTCACCTGAAATCGATCACTTCCCATAAT-TACGAATTTCGTGCACGCGTATTTCAACTTACTGCACAAT-TGGCAAT-ATTTACAAACAG-TATCCACGTGATCATTGAATGCAATGAAAAATAT-CAAA---A-----GTAATGCTTCCGAT----ACAAGTGAGAAAGT-CAT
gi|52969 : TGTTTTCAAGCATCACCTGAAATCGATTACATCCCAGAAT-TACGAATATCATGCACGCGTATTTCAACTTTGTGCACAGT-TGGTGAT-ATTTACAAACA--TATCCACTTGGTCAATGAATGCTATGAAAAATAT-AAAA---A-----ATAATGCTTCCGAT----ACACGTAAGAAAGT-CAT
gi|52970 : TGTTTTCGAGCGTCACCTGAAATCGATCACTTCCCATAAT-TACGAATATCGCGCAAGCGTATTTCAACTTCATACACTAT-TGGCAAT-ATTTACAAACAG-TATCCACATGGTCATTGAATGCAAAGAAAAATAT-CAAA---A-----ATAATGCTTCCGAT----AGAAGTGAGAAAGT-CAT
gi|52971 : TGATTTTGATCCCGACCTGAATTCAATCACTTCCGAAAAT-TATGAATATCGCACACGCGCATTACAACTTCCTGCACAAT-TGGCAAT-ATTTACAAATAGTTAT-CGCGTGGTCATTGAATGCAATGAGGAATAT-AAAA---A-----ATAATGTTT
gi|52972 : TGTTTTCGAGCGTAACCTGAAATCGACCAATTCCCATAAT-TACGAATATCGC-------------------------AAT-TGGCAAT-ATTCACAAACAG-TATCCACGGGGTCTTTGAATACAAAGAAAAATATAAAAA---A-----ATAATGCTTCCGAT----ACAAGTGAGAAAGT-
gi|52973 : TGTTTTCGTTCACAGTCTGAATTCGATCTCTTCGGAGAAC-TACGAATATCGCACAAACGTATTTCAGCTTCATGCACAAA--GGTTAT-A---ACAAATGT-TATCCACGTGGTCATTGAAAGCAGTAAAAACTAT-CAAA---A-----ATAATGTTTCCTGT----CCAAGTAAGAAAGT-
gi|52974 : TGTTTTCGATCACAACCTGATTTCACTTACTTCAGAGATT-TACAAATA--ATGCACATATATTGCAACATCCTGCA--------------TTCTCAAACAG-TATCCATGTGGTCATCAAATGCAATGAAAAATAT-AAAA---A-----ATAATTCTACCAAT----ACAAGAAAGACAGT-CATgctgaaaaattgta
gi|52975 : GTTTTCGAGCATCACCTGAAATCGACCACATCCCAGAAT-TACGTATATCGTGCACAAGTATTTCAACTTCCTACACAAT-TGGTAAT-ATTTACAAAAAG-TATCCACGTTATCATTGAATGCAATGAAAAA----AAAA---ATAATCATAATGCTTCCGAT----ACACGTAAGAAAGT-CAT
gi|52976 : GTTTTCGAGCATCACCTGAAATCGACCACATCCCAGAAT-TACGTATATCGTGCACAAGTATTTCAACTTCCTACACAAT-TGGTAAT-ATTTACAAAAAG-TATCCACGTTATCATTGAATGCAATGAAAAA----AAAA---ATAATCATAATGCTTCCGAT----ACACGTAAGAAAGT-CATtttatgatacaaacctgaacaaatgta
gi|52977 : TTTCGATCACGACCAGAATTCGATCACTTCCGAGAAT-TATGAATATCGCGCAAGCGTATTTCGACTTCCAGCACAAT-TGGCAAT-A-TTACAAATAG-TATCCACGTGATCATTGAATGGAGTGTTAAATATAGAAA---A-----ATAATGCTTCCGAT----ATAAGTAAGAAAGT-CATtttatgatacaaacctgaacaaatgta
gi|52978 : TCACAACCTGAATTCGATCACTTTCGAGAAAATACGATTATCGCGCACATGTATTTTAACTTCCTGTATAAA-TGTCAAT-ATTTACAAATAG-TACCCACGTGGTCATTGAATGCATTGAATGTTAT-CTAA---C-----A-AATGCTTCTGAT----AAAAGTAAGAAAGT-
gi|52979 : TGAATTCGATCACTTCCGAGAAT-TATGAATATTGCGCAAGGGTAT--CAACTTCCTGCACAAAATATCAATGATTT-CAAACAG-TATCCATATGGGCATTGAATGCAATGATGAATAT-AGAA---T-----ATAATGTCTCCGGT----ATAAGTAAGAAAGT-CAT
gi|52980 : TCGATCACTTCCAAAAAT-TATGAATGTCATACGTGCGTAAT-CAACTTCCACCACAAA-GGTCAAT-ATTTACAAACAG-TATATACATGGTCAGTGAATGCAATGAAAAATAT-ATAA---A-----ATAATGCTTCAGGT----ACAGGAAAGttgt
gi|52981 : TTCAAATTCCTTTACAAA-TGTCAAT-ATATACAAACAG-TATCCACGTGGTCATTGACTGCAATTAAAAATGT-AAAA---A-----ATAATGCTTCGAATGAAAACAAGTAAtta
gi|52982 : tccaagc-TGGCAAT-ATTTACAAAAAG-TATCCACATGGTCATTGAATGCAATGAAAAATAT-CAAA---A-----ATAATGCTTTTGAT----ACAAGTAAGAAAGT-CATttaattaaaaaggtgtgctataagaagtggata
gi|52983 : T-GTTTACAAACAG-TATCTACGTGGTCATTGAATGCAATGAAAAAT------A---A-----ATAATGCTTTCGAT----ACAAGTAAGAAAGT-CATtttatgatacagagctgaaaaaatgta