lowQualScore                  :                 222                                          
lowQualScore                  :            1    222                 77777777                 
lowQualScore                  :            .    ...                 ........                 
lowQualScore                  :            9    222                 77777777                 
consensus                     : CCCCCCGCCGA-AAAAA--TGGGAGCCAAGCAAAAA-C------CGCGTTATAACGGAATT
Reference ( gi|118711 )       : CCCCCCGCCGA-AAAAT--TGGGAGCCAAGCAAAAA-C------CGCGTTATAACGGAATT
gi|118712                     : CCCCCCGCCGA-AAAAT--TGGGAGCCAAGCAAAAA-C------CGCGTTATAACGGAATT
gi|118713                     : CCCCCCGCCAA-AAAAT--TGGGAGCCAAGCAAAAA-C------TGCGTTATAACGGAATT
gi|118710                     : CCCCCCGCCGA-AAAAA--TGGGAGCAAAGCAAAAA-C------CGCGTTATAACGGAATT
gi|118714                     : CCCCCAGCCGA-AAAAA--TGGGAGCCAAGCAAAAA-C------CGCGTTATAAAGGAGT
gi|118715                     : CCCCCTGCCAA-AAAAA--TTGGAGCCAAGCAAAAAAC------CGCGTTATAACGGAATT
gi|118717                     : CCCCCCGTCAA-AAAAA--TGGGAGCCAAGCAAAAA-A------CGCGCTATAACGGAACT
gi|118716                     : CTCCCCGCTGA-AAAAA--TGGGAGCCAAGGAAAAA-G------CACATTATAACGGAATT
gi|118718                     : CCCCCGGCTGA-AAAAG--TGGGAGCCAAGCAAAAA-C------CGCATTATATCGGA
gi|118720                     : CTCCCCGCAGA-AAAAA--TGGGAGCCCAGGAAAAA-C------TGTGTTATAATGGAATT
gi|118722                     : CCCACTACTGA-AAAAG--TGGGAGCCAAGCAAAAA-T------GGCGTCATAACAGAATT
gi|118721                     : CCACCCGCTGA-AAAAA--TGGGAGCCAAGCAAAAA----------CGTTATAATGGAA
gi|118719                     : CCCATTGCCGATAAAAA--TGGGAGCCAAGCAAAAA-C------CGCATTATAACAG
gi|118723                     : CCCCACGCCAA-AAAAA--TGGGAGCCAACGAAAAA-A------CGCATTATATCGGA
gi|118724                     : CCCACTATCGA-AAAAA--TGGGAGCCAAGC-AAAA-C------CACATTATAGCGGGA
gi|118727                     :  CCCCTGCCAA-AAAAAAATGTGAGCCAAGCAAAAA-C------CACGTAATAACGGAATT
gi|118726                     :  CCCCTGCCAA-AAAAAAATGTGAGCCAAGCAAAAA-C------CACGTAATAACGGAATT
gi|118725                     :  CCCCTGCCAA-AAAAAAATGTGAGCCAAGCAAAAA-C------CACGTAATAACGGAATT
gi|118728                     :  CCACTGCCGA-AAAAA--TGGTAGCCAAGCAAAAA-C------CGCATTTTAACAGA
gi|118729                     :   CCCCACTGA-AAAAA--TGGGAGCCTAGCAAAAA-A------CGCGTTAGAACGGAATT
gi|118730                     :   CCCCGCCGA-AAAAA--TGGGAGCCAAGCAAAAA-CGGAATTAGCGTTATAATGGGA
gi|118731                     :     CCGCTGA-AAAAA--TGGGAGCCAAGCAAAAA--------TATGCTATAACAGAATT





Alignments
lowQualScore                  :            1     77            1      555555                 
lowQualScore                  :            .     ..            .      ......                 
lowQualScore                  :            8     55            8      222222                 
consensus                     : CCCCCCGCCGA-AAAAA--TGGGAGCCAAGC-AAAAAC------CGCGTTATAACGGAATT
Reference ( family-780 )      : CCCCCCGCCGA-AAAAA--TGGGAGCCAAGC-AAAAAC------CGCGTTATAACGGAATT
gi|118710                     : CCCCCCGCCGA-AAAAA--TGGGAGCAAAGC-AAAAAC------CGCGTTATAACGGAATT
gi|118711                     : CCCCCCGCCGA-AAAAT--TGGGAGCCAAGC-AAAAAC------CGCGTTATAACGGAATT
gi|118712                     : CCCCCCGCCGA-AAAAT--TGGGAGCCAAGC-AAAAAC------CGCGTTATAACGGAATT
gi|118713                     : CCCCCCGCCAA-AAAAT--TGGGAGCCAAGC-AAAAAC------TGCGTTATAACGGAATT
gi|118714                     : CCCCCAGCCGA-AAAAA--TGGGAGCCAAGC-AAAAAC------CGCGTTATAAAGGAGT
gi|118715                     : CCCCCTGCCAA-AAAAA--TTGGAGCCAAGCAAAAAAC------CGCGTTATAACGGAATT
gi|118716                     : CTCCCCGCTGA-AAAAA--TGGGAGCCAAGG-AAAAAG------CACATTATAACGGAATT
gi|118717                     : CCCCCCGTCAA-AAAAA--TGGGAGCCAAGC-AAAAAA------CGCGCTATAACGGAACT
gi|118718                     : CCCCCGGCTGA-AAAAG--TGGGAGCCAAGC-AAAAAC------CGCATTATATCGGA
gi|118719                     : CCCATTGCCGATAAAAA--TGGGAGCCAAGC-AAAAAC------CGCATTATAACAG
gi|118720                     : CTCCCCGCAGA-AAAAA--TGGGAGCCCAGG-AAAAAC------TGTGTTATAATGGAATT
gi|118721                     : CCACCCGCTGA-AAAAA--TGGGAGCCAAGC-AAAAA---------CGTTATAATGGAA
gi|118722                     : CCCACTACTGA-AAAAG--TGGGAGCCAAGC-AAAAAT------GGCGTCATAACAGAATT
gi|118723                     : CCCCACGCCAA-AAAAA--TGGGAGCCAACG-AAAAAA------CGCATTATATCGGA
gi|118724                     : CCCACTATCGA-AAAAA--TGGGAGCCAAGC--AAAAC------CACATTATAGCGGGA
gi|118725                     :  CCCCTGCCAA-AAAAAAATGTGAGCCAAGC-AAAAAC------CACGTAATAACGGAATT
gi|118726                     :  CCCCTGCCAA-AAAAAAATGTGAGCCAAGC-AAAAAC------CACGTAATAACGGAATT
gi|118727                     :  CCCCTGCCAA-AAAAAAATGTGAGCCAAGC-AAAAAC------CACGTAATAACGGAATT
gi|118728                     :  CCACTGCCGA-AAAAA--TGGTAGCCAAGC-AAAAAC------CGCATTTTAACAGA
gi|118729                     :   CCCCACTGA-AAAAA--TGGGAGCCTAGC-AAAAAA------CGCGTTAGAACGGAATT
gi|118730                     :   CCCCGCCGA-AAAAA--TGGGAGCCAAGC-AAAAACGGAATTAGCGTTATAATGGGA
gi|118731                     :     CCGCTGA-AAAAA--TGGGAGCCAAGC-AAAAA-------TATGCTATAACAGAATT





Alignments
lowQualScore                  :            1     77            1      555555                 
lowQualScore                  :            .     ..            .      ......                 
lowQualScore                  :            8     55            8      222222                 
consensus                     : CCCCCCGCCGA-AAAAA--TGGGAGCCAAGC-AAAAAC------CGCGTTATAACGGAATT
Reference ( family-780 )      : CCCCCCGCCGA-AAAAA--TGGGAGCCAAGC-AAAAAC------CGCGTTATAACGGAATT
gi|118710                     : CCCCCCGCCGA-AAAAA--TGGGAGCAAAGC-AAAAAC------CGCGTTATAACGGAATT
gi|118711                     : CCCCCCGCCGA-AAAAT--TGGGAGCCAAGC-AAAAAC------CGCGTTATAACGGAATT
gi|118712                     : CCCCCCGCCGA-AAAAT--TGGGAGCCAAGC-AAAAAC------CGCGTTATAACGGAATT
gi|118713                     : CCCCCCGCCAA-AAAAT--TGGGAGCCAAGC-AAAAAC------TGCGTTATAACGGAATT
gi|118714                     : CCCCCAGCCGA-AAAAA--TGGGAGCCAAGC-AAAAAC------CGCGTTATAAAGGAGT
gi|118715                     : CCCCCTGCCAA-AAAAA--TTGGAGCCAAGCAAAAAAC------CGCGTTATAACGGAATT
gi|118716                     : CTCCCCGCTGA-AAAAA--TGGGAGCCAAGG-AAAAAG------CACATTATAACGGAATT
gi|118717                     : CCCCCCGTCAA-AAAAA--TGGGAGCCAAGC-AAAAAA------CGCGCTATAACGGAACT
gi|118718                     : CCCCCGGCTGA-AAAAG--TGGGAGCCAAGC-AAAAAC------CGCATTATATCGGA
gi|118719                     : CCCATTGCCGATAAAAA--TGGGAGCCAAGC-AAAAAC------CGCATTATAACAG
gi|118720                     : CTCCCCGCAGA-AAAAA--TGGGAGCCCAGG-AAAAAC------TGTGTTATAATGGAATT
gi|118721                     : CCACCCGCTGA-AAAAA--TGGGAGCCAAGC-AAAAA---------CGTTATAATGGAA
gi|118722                     : CCCACTACTGA-AAAAG--TGGGAGCCAAGC-AAAAAT------GGCGTCATAACAGAATT
gi|118723                     : CCCCACGCCAA-AAAAA--TGGGAGCCAACG-AAAAAA------CGCATTATATCGGA
gi|118724                     : CCCACTATCGA-AAAAA--TGGGAGCCAAGC--AAAAC------CACATTATAGCGGGA
gi|118725                     :  CCCCTGCCAA-AAAAAAATGTGAGCCAAGC-AAAAAC------CACGTAATAACGGAATT
gi|118726                     :  CCCCTGCCAA-AAAAAAATGTGAGCCAAGC-AAAAAC------CACGTAATAACGGAATT
gi|118727                     :  CCCCTGCCAA-AAAAAAATGTGAGCCAAGC-AAAAAC------CACGTAATAACGGAATT
gi|118728                     :  CCACTGCCGA-AAAAA--TGGTAGCCAAGC-AAAAAC------CGCATTTTAACAGA
gi|118729                     :   CCCCACTGA-AAAAA--TGGGAGCCTAGC-AAAAAA------CGCGTTAGAACGGAATT
gi|118730                     :   CCCCGCCGA-AAAAA--TGGGAGCCAAGC-AAAAACGGAATTAGCGTTATAATGGGA
gi|118731                     :     CCGCTGA-AAAAA--TGGGAGCCAAGC-AAAAA-------TATGCTATAACAGAATT


blockSeqs                     :            T     AA            A      GGAATT
blockSeqs                     :            .     AA            .      .     
blockSeqs                     :            .     AA            .      .     
blockSeqs                     :            .     .             .      .     
blockSeqs                     :            .     .             .      .     
blockSeqs                     :            .     .             .      .     
blockSeqs                     :            .     .             .      .     
blockSeqs                     :            .     .             .      .     
blockSeqs                     :            .     .             .      .     
blockSeqs                     :            .     .             .      .     
blockSeqs                     :            .     .             .      .     
blockSeqs                     :            .     .             .      .     
blockSeqs                     :            .     .             .      .     
blockSeqs                     :            .     .             .      .     
blockSeqs                     :            .     .             .      .     
blockSeqs                     :            .     .             .      .     
blockSeqs                     :            .     .             .      .     
blockSeqs                     :            .     .             .      .     
blockSeqs                     :            .     .             .      .     
blockSeqs                     :            .     .             .      .     
blockSeqs                     :            .     .             .      .     


blockSeqCons                  : 
originalCons                  : CCCCCCGCCGA-AAAAA--TGGGAGCCAAGC-AAAAAC------CGCGTTATAACGGAATT
finalCons                     : CCCCCCGCCGA-AAAAA--TGGGAGCCAAGC-AAAAAC------CGCGTTATAACGGAATT





Alignments
lowQualScore                  :            1     77            1      555555                 
lowQualScore                  :            .     ..            .      ......                 
lowQualScore                  :            8     55            8      222222                 
consensus                     : CCCCCCGCCGA-AAAAA--TGGGAGCCAAGC-AAAAAC------CGCGTTATAACGGAATT
Reference ( family-780 )      : CCCCCCGCCGA-AAAAA--TGGGAGCCAAGC-AAAAAC------CGCGTTATAACGGAATT
gi|118710                     : CCCCCCGCCGA-AAAAA--TGGGAGCAAAGC-AAAAAC------CGCGTTATAACGGAATT
gi|118711                     : CCCCCCGCCGA-AAAAT--TGGGAGCCAAGC-AAAAAC------CGCGTTATAACGGAATT
gi|118712                     : CCCCCCGCCGA-AAAAT--TGGGAGCCAAGC-AAAAAC------CGCGTTATAACGGAATT
gi|118713                     : CCCCCCGCCAA-AAAAT--TGGGAGCCAAGC-AAAAAC------TGCGTTATAACGGAATT
gi|118714                     : CCCCCAGCCGA-AAAAA--TGGGAGCCAAGC-AAAAAC------CGCGTTATAAAGGAGT
gi|118715                     : CCCCCTGCCAA-AAAAA--TTGGAGCCAAGCAAAAAAC------CGCGTTATAACGGAATT
gi|118716                     : CTCCCCGCTGA-AAAAA--TGGGAGCCAAGG-AAAAAG------CACATTATAACGGAATT
gi|118717                     : CCCCCCGTCAA-AAAAA--TGGGAGCCAAGC-AAAAAA------CGCGCTATAACGGAACT
gi|118718                     : CCCCCGGCTGA-AAAAG--TGGGAGCCAAGC-AAAAAC------CGCATTATATCGGA
gi|118719                     : CCCATTGCCGATAAAAA--TGGGAGCCAAGC-AAAAAC------CGCATTATAACAG
gi|118720                     : CTCCCCGCAGA-AAAAA--TGGGAGCCCAGG-AAAAAC------TGTGTTATAATGGAATT
gi|118721                     : CCACCCGCTGA-AAAAA--TGGGAGCCAAGC-AAAAA---------CGTTATAATGGAA
gi|118722                     : CCCACTACTGA-AAAAG--TGGGAGCCAAGC-AAAAAT------GGCGTCATAACAGAATT
gi|118723                     : CCCCACGCCAA-AAAAA--TGGGAGCCAACG-AAAAAA------CGCATTATATCGGA
gi|118724                     : CCCACTATCGA-AAAAA--TGGGAGCCAAGC--AAAAC------CACATTATAGCGGGA
gi|118725                     :  CCCCTGCCAA-AAAAAAATGTGAGCCAAGC-AAAAAC------CACGTAATAACGGAATT
gi|118726                     :  CCCCTGCCAA-AAAAAAATGTGAGCCAAGC-AAAAAC------CACGTAATAACGGAATT
gi|118727                     :  CCCCTGCCAA-AAAAAAATGTGAGCCAAGC-AAAAAC------CACGTAATAACGGAATT
gi|118728                     :  CCACTGCCGA-AAAAA--TGGTAGCCAAGC-AAAAAC------CGCATTTTAACAGA
gi|118729                     :   CCCCACTGA-AAAAA--TGGGAGCCTAGC-AAAAAA------CGCGTTAGAACGGAATT
gi|118730                     :   CCCCGCCGA-AAAAA--TGGGAGCCAAGC-AAAAACGGAATTAGCGTTATAATGGGA
gi|118731                     :     CCGCTGA-AAAAA--TGGGAGCCAAGC-AAAAA-------TATGCTATAACAGAATT