lowQualScore : 222
lowQualScore : 1 222 77777777
lowQualScore : . ... ........
lowQualScore : 9 222 77777777
consensus : CCCCCCGCCGA-AAAAA--TGGGAGCCAAGCAAAAA-C------CGCGTTATAACGGAATT
Reference ( gi|118711 ) : CCCCCCGCCGA-AAAAT--TGGGAGCCAAGCAAAAA-C------CGCGTTATAACGGAATT
gi|118712 : CCCCCCGCCGA-AAAAT--TGGGAGCCAAGCAAAAA-C------CGCGTTATAACGGAATT
gi|118713 : CCCCCCGCCAA-AAAAT--TGGGAGCCAAGCAAAAA-C------TGCGTTATAACGGAATT
gi|118710 : CCCCCCGCCGA-AAAAA--TGGGAGCAAAGCAAAAA-C------CGCGTTATAACGGAATT
gi|118714 : CCCCCAGCCGA-AAAAA--TGGGAGCCAAGCAAAAA-C------CGCGTTATAAAGGAGT
gi|118715 : CCCCCTGCCAA-AAAAA--TTGGAGCCAAGCAAAAAAC------CGCGTTATAACGGAATT
gi|118717 : CCCCCCGTCAA-AAAAA--TGGGAGCCAAGCAAAAA-A------CGCGCTATAACGGAACT
gi|118716 : CTCCCCGCTGA-AAAAA--TGGGAGCCAAGGAAAAA-G------CACATTATAACGGAATT
gi|118718 : CCCCCGGCTGA-AAAAG--TGGGAGCCAAGCAAAAA-C------CGCATTATATCGGA
gi|118720 : CTCCCCGCAGA-AAAAA--TGGGAGCCCAGGAAAAA-C------TGTGTTATAATGGAATT
gi|118722 : CCCACTACTGA-AAAAG--TGGGAGCCAAGCAAAAA-T------GGCGTCATAACAGAATT
gi|118721 : CCACCCGCTGA-AAAAA--TGGGAGCCAAGCAAAAA----------CGTTATAATGGAA
gi|118719 : CCCATTGCCGATAAAAA--TGGGAGCCAAGCAAAAA-C------CGCATTATAACAG
gi|118723 : CCCCACGCCAA-AAAAA--TGGGAGCCAACGAAAAA-A------CGCATTATATCGGA
gi|118724 : CCCACTATCGA-AAAAA--TGGGAGCCAAGC-AAAA-C------CACATTATAGCGGGA
gi|118727 : CCCCTGCCAA-AAAAAAATGTGAGCCAAGCAAAAA-C------CACGTAATAACGGAATT
gi|118726 : CCCCTGCCAA-AAAAAAATGTGAGCCAAGCAAAAA-C------CACGTAATAACGGAATT
gi|118725 : CCCCTGCCAA-AAAAAAATGTGAGCCAAGCAAAAA-C------CACGTAATAACGGAATT
gi|118728 : CCACTGCCGA-AAAAA--TGGTAGCCAAGCAAAAA-C------CGCATTTTAACAGA
gi|118729 : CCCCACTGA-AAAAA--TGGGAGCCTAGCAAAAA-A------CGCGTTAGAACGGAATT
gi|118730 : CCCCGCCGA-AAAAA--TGGGAGCCAAGCAAAAA-CGGAATTAGCGTTATAATGGGA
gi|118731 : CCGCTGA-AAAAA--TGGGAGCCAAGCAAAAA--------TATGCTATAACAGAATT
Alignments
lowQualScore : 1 77 1 555555
lowQualScore : . .. . ......
lowQualScore : 8 55 8 222222
consensus : CCCCCCGCCGA-AAAAA--TGGGAGCCAAGC-AAAAAC------CGCGTTATAACGGAATT
Reference ( family-780 ) : CCCCCCGCCGA-AAAAA--TGGGAGCCAAGC-AAAAAC------CGCGTTATAACGGAATT
gi|118710 : CCCCCCGCCGA-AAAAA--TGGGAGCAAAGC-AAAAAC------CGCGTTATAACGGAATT
gi|118711 : CCCCCCGCCGA-AAAAT--TGGGAGCCAAGC-AAAAAC------CGCGTTATAACGGAATT
gi|118712 : CCCCCCGCCGA-AAAAT--TGGGAGCCAAGC-AAAAAC------CGCGTTATAACGGAATT
gi|118713 : CCCCCCGCCAA-AAAAT--TGGGAGCCAAGC-AAAAAC------TGCGTTATAACGGAATT
gi|118714 : CCCCCAGCCGA-AAAAA--TGGGAGCCAAGC-AAAAAC------CGCGTTATAAAGGAGT
gi|118715 : CCCCCTGCCAA-AAAAA--TTGGAGCCAAGCAAAAAAC------CGCGTTATAACGGAATT
gi|118716 : CTCCCCGCTGA-AAAAA--TGGGAGCCAAGG-AAAAAG------CACATTATAACGGAATT
gi|118717 : CCCCCCGTCAA-AAAAA--TGGGAGCCAAGC-AAAAAA------CGCGCTATAACGGAACT
gi|118718 : CCCCCGGCTGA-AAAAG--TGGGAGCCAAGC-AAAAAC------CGCATTATATCGGA
gi|118719 : CCCATTGCCGATAAAAA--TGGGAGCCAAGC-AAAAAC------CGCATTATAACAG
gi|118720 : CTCCCCGCAGA-AAAAA--TGGGAGCCCAGG-AAAAAC------TGTGTTATAATGGAATT
gi|118721 : CCACCCGCTGA-AAAAA--TGGGAGCCAAGC-AAAAA---------CGTTATAATGGAA
gi|118722 : CCCACTACTGA-AAAAG--TGGGAGCCAAGC-AAAAAT------GGCGTCATAACAGAATT
gi|118723 : CCCCACGCCAA-AAAAA--TGGGAGCCAACG-AAAAAA------CGCATTATATCGGA
gi|118724 : CCCACTATCGA-AAAAA--TGGGAGCCAAGC--AAAAC------CACATTATAGCGGGA
gi|118725 : CCCCTGCCAA-AAAAAAATGTGAGCCAAGC-AAAAAC------CACGTAATAACGGAATT
gi|118726 : CCCCTGCCAA-AAAAAAATGTGAGCCAAGC-AAAAAC------CACGTAATAACGGAATT
gi|118727 : CCCCTGCCAA-AAAAAAATGTGAGCCAAGC-AAAAAC------CACGTAATAACGGAATT
gi|118728 : CCACTGCCGA-AAAAA--TGGTAGCCAAGC-AAAAAC------CGCATTTTAACAGA
gi|118729 : CCCCACTGA-AAAAA--TGGGAGCCTAGC-AAAAAA------CGCGTTAGAACGGAATT
gi|118730 : CCCCGCCGA-AAAAA--TGGGAGCCAAGC-AAAAACGGAATTAGCGTTATAATGGGA
gi|118731 : CCGCTGA-AAAAA--TGGGAGCCAAGC-AAAAA-------TATGCTATAACAGAATT
Alignments
lowQualScore : 1 77 1 555555
lowQualScore : . .. . ......
lowQualScore : 8 55 8 222222
consensus : CCCCCCGCCGA-AAAAA--TGGGAGCCAAGC-AAAAAC------CGCGTTATAACGGAATT
Reference ( family-780 ) : CCCCCCGCCGA-AAAAA--TGGGAGCCAAGC-AAAAAC------CGCGTTATAACGGAATT
gi|118710 : CCCCCCGCCGA-AAAAA--TGGGAGCAAAGC-AAAAAC------CGCGTTATAACGGAATT
gi|118711 : CCCCCCGCCGA-AAAAT--TGGGAGCCAAGC-AAAAAC------CGCGTTATAACGGAATT
gi|118712 : CCCCCCGCCGA-AAAAT--TGGGAGCCAAGC-AAAAAC------CGCGTTATAACGGAATT
gi|118713 : CCCCCCGCCAA-AAAAT--TGGGAGCCAAGC-AAAAAC------TGCGTTATAACGGAATT
gi|118714 : CCCCCAGCCGA-AAAAA--TGGGAGCCAAGC-AAAAAC------CGCGTTATAAAGGAGT
gi|118715 : CCCCCTGCCAA-AAAAA--TTGGAGCCAAGCAAAAAAC------CGCGTTATAACGGAATT
gi|118716 : CTCCCCGCTGA-AAAAA--TGGGAGCCAAGG-AAAAAG------CACATTATAACGGAATT
gi|118717 : CCCCCCGTCAA-AAAAA--TGGGAGCCAAGC-AAAAAA------CGCGCTATAACGGAACT
gi|118718 : CCCCCGGCTGA-AAAAG--TGGGAGCCAAGC-AAAAAC------CGCATTATATCGGA
gi|118719 : CCCATTGCCGATAAAAA--TGGGAGCCAAGC-AAAAAC------CGCATTATAACAG
gi|118720 : CTCCCCGCAGA-AAAAA--TGGGAGCCCAGG-AAAAAC------TGTGTTATAATGGAATT
gi|118721 : CCACCCGCTGA-AAAAA--TGGGAGCCAAGC-AAAAA---------CGTTATAATGGAA
gi|118722 : CCCACTACTGA-AAAAG--TGGGAGCCAAGC-AAAAAT------GGCGTCATAACAGAATT
gi|118723 : CCCCACGCCAA-AAAAA--TGGGAGCCAACG-AAAAAA------CGCATTATATCGGA
gi|118724 : CCCACTATCGA-AAAAA--TGGGAGCCAAGC--AAAAC------CACATTATAGCGGGA
gi|118725 : CCCCTGCCAA-AAAAAAATGTGAGCCAAGC-AAAAAC------CACGTAATAACGGAATT
gi|118726 : CCCCTGCCAA-AAAAAAATGTGAGCCAAGC-AAAAAC------CACGTAATAACGGAATT
gi|118727 : CCCCTGCCAA-AAAAAAATGTGAGCCAAGC-AAAAAC------CACGTAATAACGGAATT
gi|118728 : CCACTGCCGA-AAAAA--TGGTAGCCAAGC-AAAAAC------CGCATTTTAACAGA
gi|118729 : CCCCACTGA-AAAAA--TGGGAGCCTAGC-AAAAAA------CGCGTTAGAACGGAATT
gi|118730 : CCCCGCCGA-AAAAA--TGGGAGCCAAGC-AAAAACGGAATTAGCGTTATAATGGGA
gi|118731 : CCGCTGA-AAAAA--TGGGAGCCAAGC-AAAAA-------TATGCTATAACAGAATT
blockSeqs : T AA A GGAATT
blockSeqs : . AA . .
blockSeqs : . AA . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqCons :
originalCons : CCCCCCGCCGA-AAAAA--TGGGAGCCAAGC-AAAAAC------CGCGTTATAACGGAATT
finalCons : CCCCCCGCCGA-AAAAA--TGGGAGCCAAGC-AAAAAC------CGCGTTATAACGGAATT
Alignments
lowQualScore : 1 77 1 555555
lowQualScore : . .. . ......
lowQualScore : 8 55 8 222222
consensus : CCCCCCGCCGA-AAAAA--TGGGAGCCAAGC-AAAAAC------CGCGTTATAACGGAATT
Reference ( family-780 ) : CCCCCCGCCGA-AAAAA--TGGGAGCCAAGC-AAAAAC------CGCGTTATAACGGAATT
gi|118710 : CCCCCCGCCGA-AAAAA--TGGGAGCAAAGC-AAAAAC------CGCGTTATAACGGAATT
gi|118711 : CCCCCCGCCGA-AAAAT--TGGGAGCCAAGC-AAAAAC------CGCGTTATAACGGAATT
gi|118712 : CCCCCCGCCGA-AAAAT--TGGGAGCCAAGC-AAAAAC------CGCGTTATAACGGAATT
gi|118713 : CCCCCCGCCAA-AAAAT--TGGGAGCCAAGC-AAAAAC------TGCGTTATAACGGAATT
gi|118714 : CCCCCAGCCGA-AAAAA--TGGGAGCCAAGC-AAAAAC------CGCGTTATAAAGGAGT
gi|118715 : CCCCCTGCCAA-AAAAA--TTGGAGCCAAGCAAAAAAC------CGCGTTATAACGGAATT
gi|118716 : CTCCCCGCTGA-AAAAA--TGGGAGCCAAGG-AAAAAG------CACATTATAACGGAATT
gi|118717 : CCCCCCGTCAA-AAAAA--TGGGAGCCAAGC-AAAAAA------CGCGCTATAACGGAACT
gi|118718 : CCCCCGGCTGA-AAAAG--TGGGAGCCAAGC-AAAAAC------CGCATTATATCGGA
gi|118719 : CCCATTGCCGATAAAAA--TGGGAGCCAAGC-AAAAAC------CGCATTATAACAG
gi|118720 : CTCCCCGCAGA-AAAAA--TGGGAGCCCAGG-AAAAAC------TGTGTTATAATGGAATT
gi|118721 : CCACCCGCTGA-AAAAA--TGGGAGCCAAGC-AAAAA---------CGTTATAATGGAA
gi|118722 : CCCACTACTGA-AAAAG--TGGGAGCCAAGC-AAAAAT------GGCGTCATAACAGAATT
gi|118723 : CCCCACGCCAA-AAAAA--TGGGAGCCAACG-AAAAAA------CGCATTATATCGGA
gi|118724 : CCCACTATCGA-AAAAA--TGGGAGCCAAGC--AAAAC------CACATTATAGCGGGA
gi|118725 : CCCCTGCCAA-AAAAAAATGTGAGCCAAGC-AAAAAC------CACGTAATAACGGAATT
gi|118726 : CCCCTGCCAA-AAAAAAATGTGAGCCAAGC-AAAAAC------CACGTAATAACGGAATT
gi|118727 : CCCCTGCCAA-AAAAAAATGTGAGCCAAGC-AAAAAC------CACGTAATAACGGAATT
gi|118728 : CCACTGCCGA-AAAAA--TGGTAGCCAAGC-AAAAAC------CGCATTTTAACAGA
gi|118729 : CCCCACTGA-AAAAA--TGGGAGCCTAGC-AAAAAA------CGCGTTAGAACGGAATT
gi|118730 : CCCCGCCGA-AAAAA--TGGGAGCCAAGC-AAAAACGGAATTAGCGTTATAATGGGA
gi|118731 : CCGCTGA-AAAAA--TGGGAGCCAAGC-AAAAA-------TATGCTATAACAGAATT