lowQualScore : 2222222222222222222 11111 1111111111111 222222222222222222222 1
lowQualScore : 3 999 3 44 33 8 2 2 2 2 0 1 9999999999999999999 0 99999 6 22 2 9999999999999 777777 1 4 2 222222222222222222222 6 7777777 4 5555 33 77 2 5 3
lowQualScore : . ... . .. .. . . . . . . . ................... . ..... . .. . ............. ...... . . . ..................... . ....... . .... .. .. . . .
lowQualScore : 1 666 1 22 99 0 4 4 4 4 1 6 2222222222222222222 5 00000 2 99 1 1111111111111 777777 1 8 2 999999999999999999999 7 2222222 7 3333 44 66 8 0 6
consensus : GCCTA-TGGCCATTTACAAA---GAA-T--ATTTAAAC--AAATATGGCATAGACACACAA-T-ATA-T-AAACATAGGTA--AN-ACAC----TCA--CAAACAA-ACAGTCAAACATTGTA--AGATAT-CAAATCTAG--AC-------ATTA-----TATTTTCAATAATTCA-ATT------------------A--A-G-------TGAATATAGTTAAGAAGCAGTCATT-GTATTCAAGGTAG----TTTTT--CTTA-GCATAAAAGCCTCAGNAATATATCTTGATGTATTACGCACTAGT
Reference ( gi|12684 ) : GCCTA-TGGCCATTTACAAA---GAA-T--ATTTAAAC--AAATATGGCATAAACACACAA-T-ATA-T-AAACATAGATA--AG-ACAT----TCA--CAAACAA-ACAGTCAAATACTGTA--AGATAT-CAAATCTCG--AT-------ATTA-----TATTTTCAGTAATTCA-ATT------------------A--A-G-------TGAATATAGTTAAGAAGCAGTCATT-GTATTCAAGGTAG----TTTTT--CTTG-GCGTAAAAGCCTCAGTAATATATCTTGATTTATTACGCACTAGT
gi|12683 : GCCTA-TGGCCATTTACAAA---GAA-T--ATTTAAAC--ATATATGGCATAAACACACAA-T-ATA-T-AAACATAGATA--AT-ACAT----TCA--CAAACAA-ACAGTCAAATATTGTA--AGATAT-CAAATCTAG--AC-------ATTA-----TATTTTCAATAATTTA-TTT------------------A--A-G-------TGAATAAAGTTAAGAAGCAGTCATT-GTATTCAAGGTAG----TTTTT--CTTA-GCGTAAAAGCCTCAGTAATATATCTTGATGTATTACGCACTAGT
gi|12685 : GCCTA-TGGCCATTTACAAA---GAA-T--ATTTAAAC--AAATATGGCATAGACACACAA-T-ATA-T-AAACATAGGTA--AA-ATAT----T-------ACCA-ATAGTCAAATATTTTG--AGATAT-CAAATCTAG--AC-------ATTA-----TATTTTCAGTAATTCA-ATT------------------A--A-G-------TGAATATAGTTCAGAAACAGTCATT-GTATGCAAGGTAG----TTTTT--CTTA-GCGTTAAAGCCTCAGTAATATATCTTGATGTATTACGCACTAGT
gi|12686 : GCCTA-TGGCCATTTACAAA---GAA-T--ATTCAAAC--AAATATGGCATAGACACACAA-T-ATA-T-AAACATACGTA--AG-ATAT----TCA--CAAACAA-ACAGTCAAATATTGTA--AGATAT-CAAATCTAG--AC-------ATTA-----TATTTTCAATAATTCA-TTT------------------A--A-G-------TAAATATAGTTAAGAAG----CATT-GTATTCAAGTTAG----TTTTT--CTTA-GCGTAAAAGCCTCAGTAATAGATCTTGATGTATT
gi|12687 : GCCTG-TGACCGTTTACAAA---GAA-T--ATTTAAAC--AAATATGGCATAAACACACAA-T-ATA-T-AAACATTGGTA--AA-ATAC----TCA--CAGACA-----GTCAAATATTGTT--AGATAT-TAAATCTAG--AT-------ATTA-----TATTTTCAATAATTCA-ATT------------------A--A-G-------TGAATATAACTAAGAAGCAGTCATT-TTATTAAAGGTAG----TTTAA--CTTA-GCACAGAGGCCTCAGTAATATATCGTGATGTATTACCCACTAG
gi|12689 : GCCTA-TGACCATTTACAAA---AAAAT--ATTTAAAC--AAATATGGCATAGACATACAC-T-ATA-T-AAACATAGTTA--AA-ATAC----TCA--CAGACA-----GTCACATATGGTA--AGATAT-CAAATCTAG--AT-------ATTGAAAATTGTTTTCAGTAATCCA-ATT------------------A--A-G-------TGAAAATATTTAAGAAGCAGTCATT-GTATTAAAGGTAG----TTTTT--CTTA-GCATAAAAGCCCCAGTAATATATCGTGCTGTGGTACGCACTAGT
gi|12688 : GCCTA-TGGCCATTTACCAA---TAA-T--ATTTAAAC--AAATATGGCATAGACACACAA-T-AAT-T-TAACATAGGTT--AT-AGAC----TCG--TAAACA-----GTCAAACAATGTA--C-ATAT-CAAATCTAG--AC-------ATTG-----TATTTTCAATAATTCA-ATT------------------C--A-G-------TGAATATAGTATAGAATCAGTCATT-GTATTTAAGGTAG----TTTTT--CTTA-GCATAAAAGCCCGAGTAATAAATATTGATGTATTTCGCACTAGT
gi|12690 : GCCAA-TGGCCATTTACAAA---GAA-T--ATTTAATC--AAATATGGCTTAGACACAGAA-T-ATA-T-AAACATGGGTA--AA-ATAC----TCA--TTAACA-----GTCAAACATTGTA--AGATAT-CATATCTGG--AC-------GTTA-----CATTTTCAGTAATTCA-ATT------------------C--A-G-------TAAATATAGTTAAGAAGTAGTCATT-GTATTCAAG
gi|12691 : GCCTA-TGGCCATTTAAACT---GGA-T--ATTTAAAC--AAAGATGGCATAG--ACACAA-T-ATA-A-ACACATGGGTAATAG-AC-T----T-------ATAA-ACAGTCAAACGTTGTA--AGAT
gi|12693 : GCCTA-TGGCCATTTACACATTCAAA-TTAATTTAAA------TATGGCATAGACATACAATT-ATA-TGAAATACAAACA--AATACATACAATTA--TATGTAATACAATCAAATAC-AT---ACATAT-CACAT
gi|12692 : GCTTA-TGGCCATTTACAAATC-GAA----AT--AAACTCAAATATGGCATAGACAAACAA-TAATATT-AAATACAAA-A--AG-ATA------CA--CAattcaa
gi|12694 : CTA-CGGCCATTTACAAA---GAA-T--ATTTAAAC--AAATATGGCATAGACATACTG-T-ATA-T-AAACATAGATA--AT-AGCC----TCT--TAAATA-----GTCAAAGATTGTA--AGACAT-CAAATCTAG--AC-------ATTA-----CATTTGCAATAATTCA-ATT------------------C--A-G-------TGAGAATAGTTAAAATGCATTCATT-GTATTCAATGTAG----TTTTT--CTAA-GCATAAAAGCTTCAGAAATATATCTTGATTTATAACGCACTAGTc
gi|12695 : CTAGTAGCCATTAACAAT---GTA-T--ATCAAAAC--AAATACCGCATGTATATACAT-T-ATA-T-ATACATAGGT-------TAT----AGA--CACGTAA-ACAGTCAAGCAGTGCA--AGATAG-CAATTCTAG--AC-------ATTC-----CATTTTCAATCTTTTA-ATT------------------C--A-G-------CGGATATAGATAAGAAACAGTCATT-GTATTCGAGGTCT----TTTTT--CTTA-ACATAAAACCCTC
gi|12696 : CTG-TGGTCATTTACAAT---GTT-T--ATTAAAAC--AAATGTGGCAAAGACATAAAA-T-ATA-T-AAATAT--------------------------ATAA-ACAGCCAAACATTGTA--AGATAT-CAAATCCAGATAT-------ATCA-----CATTTTGA-TAATTTATATTC-----------------C--A-G-------TGAA
gi|12700 : AC--AAATA----ATCGACATACCA-T-GTA------CAT-GTTA--AC-ACAT----------AAATAA--TAGACAAATTATATATCAGTTACACAAAT---G--AA-------AT-G-----TATTTT---TAATTTA-AAA------------------A--A-AAAAAAGATGAAAATATATATGAAGCAATCATT-GTATTC----TTT----TTTTT--CTGA-GCATAAAAACCTTAGAAATATATGTTGA---ATTACGCATTAattatcatgttttcatgttaaaaaaaatctattcaa
gi|12697 : ataagcatATATG-CATA--CACATAA-T-AGA-T-AAAT-TATATA------CAG----TCA----AACAA--C--TTTGATATTTTA--ATA-AT-CAATTCTAA--AC-------ATGA-----AATGTTCAATAACTAA-AAT------------------A--AAG-------TGAATATATCTTATAAGCAGTCATTCGTATTAAAGGTAT----TTTTTTTCTAA-GCATAAAAGCCTTAGAAATATATTTTGAAATAGTAGGCACTA
gi|12698 : ATATG-CATA--CACATTA-T-AGA-T-AAAT-TATATA-------------TCAGTCAAACAA--C--TTTGATATTTTA--ATA-AT-CAATTCTAA--ATTCTAAACATGA-----AATGTTCAATAACTAA-AAT------------------A--AAG-------TGAATATATCTTATAAGCAGTCATTCGTATTAAAGGTAT----TTTTT--TCTGAGCATAAAAGCCTTAGAAATATAATTTGAAATACTAGGCACTA
gi|12699 : CGTAAGCATACAA-T-ATA-T-AAACACAGACACTAG-AC------TCA--TAAACA-----GTCAAACACAGCA--ACATAT-AAAATCTAG--AC-------ATTA-----TCTTTTAAA-AATTAA-ATT------------------G--A-T-------TGAATACAGTTAAGAAGCAGCCATT-GTATTCTAGGTAG----TTTTT--CTTA-ACATAAAAGTCTCTGAAATGTATCTTGATGTATTACGCACTAGT
gi|12702 : ATAA-ACAGTCAAACAGCGCA--AGAAAT-CAAATCTAG--AC-------ATTA-----CATTTTAAATATTTCA-ATTCAGTGAATATAGTTAAGAAGCA-G-------TGAATATAGTTAAGGAGCAGTCATT-GAATTCAAGGTAG----TTTTT--CTGA-GCATACACGTTTCAGAAATAAATCTTGGTATAT
gi|12703 : tatgtactcATAA-GCAGTCAGACATCGCA--AGAAAT-CAAATCT-----------------------------AG--ATTCA-ATT------------------C--A-G-------TGAATTTAGTTAAGAAACAGTCATT-GAATTCAAGGTAG----TTTTT--CT
gi|12701 : tatgtactgA-ACATTCAAACGTTGTA--AGGTAT-TAAATCTTA--A-----------------------CAATAATTCA-ATT------------------T--A-G-------TGAATATAGTTAAGAAGCAGTCATT-GTATTTAGTGT-GTTCTTTCTT--CTTA-GCATAATAGGCTCCGAAACATATTTTGATGTATGACGTA
gi|12704 : tgagacgtatacacatatataacagccgcttt-CAAATCTAA--AC-------ATTC-----AATTTT-AATACTATA-ATT------------------A--AAG-------TGGATATA-TAAATAAACAGTCACT-GTATTCAATGTAG----TTTTT--CTGA-CCATAAAAACCTC
Alignments
lowQualScore : 11111111111 1111 222222222222222222222
lowQualScore : 2 888 2 33 33 2 2 2 2 333 2 11111111111 3333 0 0 333 2 555555 4444 2 2 4444 333 2 2 22 888888 1 2 2 111111111111111111111 4 6666666 4 2 5555 33 0 1
lowQualScore : . ... . .. .. . . . . ... . ........... .... . . ... . ...... .... . . .... ... . . .. ...... . . . ..................... . ....... . . .... .. . .
lowQualScore : 9 999 9 99 77 4 4 2 2 888 6 11111111111 9999 6 1 555 0 888888 2222 0 0 2222 555 0 0 88 000000 2 1 1 333333333333333333333 2 8888888 4 4 0000 22 2 0
consensus : GCCTA-TGGCCATTTACAAA---GAA-T--ATTTAAAC--AAATATGGCATAGACACACAA-T-ATA-TAAAC-ATAGGTAANA--NACTCACAAACAA--ACAGTCAAACA---T-TG------TA----AGAT-AT-CAA----A---T-C-TAG--ACATTA-----TATTTTCAATAATT-CA-ATT------------------A--A-G-------TGAATATAGTTAAGAAGCAGTCATT-GTATTCAAGGTA-G----TTTTT--CTTAGCATAAAAGCCTCAGNAATATATCTTGATGTATTACGCACTAGT
Reference ( family-773 ) : GCCTA-TGGCCATTTACAAA---GAA-T--ATTTAAAC--AAATATGGCATAGACACACAA-T-ATA-TAAAC-ATAGGTAANA--CACTCACAAACAA--ACAGTCAAACA---T-TG------TA----AGAT-AT-CAA----A---T-C-TAG--ACATTA-----TATTTTCAATAATT-CA-ATT------------------A--A-G-------TGAATATAGTTAAGAAGCAGTCATT-GTATTCAAGGTA-G----TTTTT--CTTAGCATAAAAGCCTCAGNAATATATCTTGATGTATTACGCACTAGT
gi|12683 : GCCTA-TGGCCATTTACAAA---GAA-T--ATTTAAAC--ATATATGGCATAAACACACAA-T-ATA-TAAAC-ATAGATAATA--CATTCACAAACAA--ACAGTCAAATA---T-TG------TA----AGAT-AT-CAA----A---T-C-TAG--ACATTA-----TATTTTCAATAATT-TA-TTT------------------A--A-G-------TGAATAAAGTTAAGAAGCAGTCATT-GTATTCAAGGTA-G----TTTTT--CTTAGCGTAAAAGCCTCAGTAATATATCTTGATGTATTACGCACTAGT
gi|12684 : GCCTA-TGGCCATTTACAAA---GAA-T--ATTTAAAC--AAATATGGCATAAACACACAA-T-ATA-TAAAC-ATAGATAAGA--CATTCACAAACAA--ACAGTCAAATA---C-TG------TA----AGAT-AT-CAA----A---T-C-TCG--ATATTA-----TATTTTCAGTAATT-CA-ATT------------------A--A-G-------TGAATATAGTTAAGAAGCAGTCATT-GTATTCAAGGTA-G----TTTTT--CTTGGCGTAAAAGCCTCAGTAATATATCTTGATTTATTACGCACTAGT
gi|12685 : GCCTA-TGGCCATTTACAAA---GAA-T--ATTTAAAC--AAATATGGCATAGACACACAA-T-ATA-TAAAC-ATAGGTAAAA--TATT-----ACCA--ATAGTCAAATA---T-TT------TG----AGAT-AT-CAA----A---T-C-TAG--ACATTA-----TATTTTCAGTAATT-CA-ATT------------------A--A-G-------TGAATATAGTTCAGAAACAGTCATT-GTATGCAAGGTA-G----TTTTT--CTTAGCGTTAAAGCCTCAGTAATATATCTTGATGTATTACGCACTAGT
gi|12686 : GCCTA-TGGCCATTTACAAA---GAA-T--ATTCAAAC--AAATATGGCATAGACACACAA-T-ATA-TAAAC-ATACGTAAGA--TATTCACAAACAA--ACAGTCAAATA---T-TG------TA----AGAT-AT-CAA----A---T-C-TAG--ACATTA-----TATTTTCAATAATT-CA-TTT------------------A--A-G-------TAAATATAGTTAAGAAG----CATT-GTATTCAAGTTA-G----TTTTT--CTTAGCGTAAAAGCCTCAGTAATAGATCTTGATGTATT
gi|12687 : GCCTG-TGACCGTTTACAAA---GAA-T--ATTTAAAC--AAATATGGCATAAACACACAA-T-ATA-TAAAC-ATTGGTAAAA--TACTCACAGACA------GTCAAATA---T-TG------TT----AGAT-AT-TAA----A---T-C-TAG--ATATTA-----TATTTTCAATAATT-CA-ATT------------------A--A-G-------TGAATATAACTAAGAAGCAGTCATT-TTATTAAAGGTA-G----TTTAA--CTTAGCACAGAGGCCTCAGTAATATATCGTGATGTATTACCCACTAG
gi|12688 : GCCTA-TGGCCATTTACCAA---TAA-T--ATTTAAAC--AAATATGGCATAGACACACAA-T-AAT-TTAAC-ATAGGTTATA--GACTCGTAAACA------GTCAAACA---A-TG------TA----C-AT-AT-CAA----A---T-C-TAG--ACATTG-----TATTTTCAATAATT-CA-ATT------------------C--A-G-------TGAATATAGTATAGAATCAGTCATT-GTATTTAAGGTA-G----TTTTT--CTTAGCATAAAAGCCCGAGTAATAAATATTGATGTATTTCGCACTAGT
gi|12689 : GCCTA-TGACCATTTACAAA---AAAAT--ATTTAAAC--AAATATGGCATAGACATACAC-T-ATA-TAAAC-ATAGTTAAAA--TACTCACAGACA------GTCACATA---T-GG------TA----AGAT-AT-CAA----A---T-C-TAG--ATATTGAAAATTGTTTTCAGTAATC-CA-ATT------------------A--A-G-------TGAAAATATTTAAGAAGCAGTCATT-GTATTAAAGGTA-G----TTTTT--CTTAGCATAAAAGCCCCAGTAATATATCGTGCTGTGGTACGCACTAGT
gi|12690 : GCCAA-TGGCCATTTACAAA---GAA-T--ATTTAATC--AAATATGGCTTAGACACAGAA-T-ATA-TAAAC-ATGGGTAAAA--TACTCATTAACA------GTCAAACA---T-TG------TA----AGAT-AT-CAT----A---T-C-TGG--ACGTTA-----CATTTTCAGTAATT-CA-ATT------------------C--A-G-------TAAATATAGTTAAGAAGTAGTCATT-GTATTCAAG
gi|12691 : GCCTA-TGGCCATTTAAACT---GGA-T--ATTTAAAC--AAAGATGGCATAG--ACACAA-T-ATA-AACAC-ATGGGTAATA--GACTT----ATAA--ACAGTCAAACG---T-TG------TA----AGAT-
gi|12692 : GCTTA-TGGCCATTTACAAATC-GAA----AT--AAACTCAAATATGGCATAGACAAACAA-TAATATTAAAT-ACAAA-AAGA--TACACAC
gi|12693 : GCCTA-TGGCCATTTACACATTCAAA-TTAATTTAAA------TATGGCATAGACATACAATT-ATA-TGAA--AT---------------ACAAACAAATACATACAATTA---TATG------TA----ATACAAT-CAA----A---TACATAC--ATATCA-----CATATTCAA
gi|12694 : CTA-CGGCCATTTACAAA---GAA-T--ATTTAAAC--AAATATGGCATAGACATACTG-T-ATA-TAAAC-ATAGATAATA--GCCTCTTAAATA------GTCAAAGA---T-TG------TA----AGAC-AT-CAA----A---T-C-TAG--ACATTA-----CATTTGCAATAATT-CA-ATT------------------C--A-G-------TGAGAATAGTTAAAATGCATTCATT-GTATTCAATGTA-G----TTTTT--CTAAGCATAAAAGCTTCAGAAATATATCTTGATTTATAACGCACTAGT
gi|12695 : CTAGTAGCCATTAACAAT---GTA-T--ATCAAAAC--AAATACCGCATGTATATACAT-T-ATA-TATAC-ATAGGTTATA--GAC--ACG--TAA--ACAGTCAAGCA---G-TG------CA----AGAT-AG-CAA----T---T-C-TAG--ACATTC-----CATTTTCAATCTTT-TA-ATT------------------C--A-G-------CGGATATAGATAAGAAACAGTCATT-GTATTCGAGGTC-T----TTTTT--CTTAACATAAAACCCTC
gi|12696 : CTG-TGGTCATTTACAAT---GTT-T--ATTAAAAC--AAATGTGGCAAAGACATAAAA-T-ATA-TAAAT-AT-------------------ATAA--ACAGCCAAACA---T-TG------TA----AGAT-AT-CAA----A---T-C-CAGATATATCA-----CATTTT-GATAATT-TATATTC-----------------C--A-G-------TGAA
gi|12697 : ATATG-CATA--CACATAA-T-AGA-TAAATTATA-----TA--CAGTCA--AACAA---C--TTTGATA---T-TT------TA----ATA--AT-CAA----T---T-C-TAA--ACATGA-----AATGTTCAATAACT-AA-AAT------------------A--AAG-------TGAATATATCTTATAAGCAGTCATTCGTATTAAAGGTA-T----TTTTTTTCTAAGCATAAAAGCCTTAGAAATATATTTTGAAATAGTAGGCACTAattatcatgttttcatgttaaaaaaaatctattcaa
gi|12698 : CAGTCAAACAACTT-TGATATTTTA----ATA--AT-CAATTCTAAATT-C-TAA--ACATGA-----AATGTTCAATAACTAAA-ATA------------------A--A-G-------TGAATATATCTTATAAGCAGTCATTCGTATTAAAGGTATT----TTTTT--CTGAGCATAAAAGCCTTAGAAATATAATTTGAAATACTAGGCACTA
gi|12699 : atatgcatacacattatagataaattatatatCGTAAGCATACAA-T-ATA-TAAAC-ACAGACACTA--GACTCATAAACA------GTCAAACA---C-AG------CA----ACAT-AT-AAA----A---T-C-TAG--ACATTA-----TCTTTTAAA-AATT-AA-ATT------------------G--A-T-------TGAATACAGTTAAGAAGCAGCCATT-GTATTCTAGGTA-G----TTTTT--CTTAACATAAAAGTCTCTGAAATGTATCTTGATGTATTACGCACTAGT
gi|12700 : AC--AAATA----ATCGACATACCA-T-GTA-----C-AT-GTTAACA--CAT----AAATAA---TAGACAAA-----T-TA------TATATCAGTT-ACACAA----A---T-----G--AAAT-G-----TATTTT---TAATT-TA-AAA------------------A--A-AAAAAAGATGAAAATATATATGAAGCAATCATT-GTATTC----TT-T----TTTTT--CTGAGCATAAAAACCTTAGAAATATATGTTGA---ATTACGCATTA
gi|12701 : ataagcatTA-TACAC-ATATATAACAGCCGCTTT------A--ACATTCAAACG---T-TG------TA----AGGT-AT-TAA----A---T-C---------TTA------A----CAATAATT-CA-ATT------------------T--A-G-------TGAATATAGTTAAGAAGCAGTCATT-GTATTTAGTGT--GTTCTTTCTT--CTTAGCATAATAGGCTCCGAAACATATTTTGATGTATGACGTA
gi|12702 : tgagacgATAA--ACAGTCAAACA---G-CG------CA----AGAA-AT-CAA----A---T-C-TAG--ACATTA-----CATTTTAAATATTT-CA-ATTCAGTGAATATAGTTAAGAAGCA-G-------TGAATATAGTTAAGGAGCAGTCATT-GAATTCAAGGTA-G----TTTTT--CTGAGCATACACGTTTCAGAAATAAATCTTGGTATAT
gi|12703 : tatgtactcATAA--GCAGTCAGACA---T-CG------CA----AGAA-AT-CAA----A---T-C-TAG------------------------ATT-CA-ATT------------------C--A-G-------TGAATTTAGTTAAGAAACAGTCATT-GAATTCAAGGTA-G----TTTTT--CT
gi|12704 : tatgtactg-CAA----A---T-C-TAA--ACATTC-----AATTTT-AATACTA-TA-ATT------------------A--AAG-------TGGATATA-TAAATAAACAGTCACT-GTATTCAATGTA-G----TTTTT--CTGACCATAAAAACCTC
Alignments
lowQualScore : 1111 222222222222222222222
lowQualScore : 2 888 2 33 33 2 2 2 1 2 1 4 2 0 2222 0 333 2 555555 4444 2 2 4444 333 2 2 22 888888 1 2 2 111111111111111111111 4 6666666 4 2 5555 33 0 1
lowQualScore : . ... . .. .. . . . . . . . . . .... . ... . ...... .... . . .... ... . . .. ...... . . . ..................... . ....... . . .... .. . .
lowQualScore : 9 999 9 99 77 4 4 4 5 1 8 1 1 4 8888 1 555 0 888888 2222 0 0 2222 555 0 0 88 000000 2 1 1 333333333333333333333 2 8888888 4 4 0000 22 2 0
consensus : GCCTA-TGGCCATTTACAAA---GAA-T--ATTTAAAC--AAATATGGCATAGACACACAAT-ATA-TAAAC-ATAGGTAANANACTCACAAACAAACAGTCAAACA---T-TG------TA----AGAT-AT-CAA----A---T-C-TAG--ACATTA-----TATTTTCAATAATT-CA-ATT------------------A--A-G-------TGAATATAGTTAAGAAGCAGTCATT-GTATTCAAGGTA-G----TTTTT--CTTAGCATAAAAGCCTCAGNAATATATCTTGATGTATTACGCACTAGT
Reference ( family-773 ) : GCCTA-TGGCCATTTACAAA---GAA-T--ATTTAAAC--AAATATGGCATAGACACACAAT-ATA-TAAAC-ATAGGTAANANACTCACAAACAAACAGTCAAACA---T-TG------TA----AGAT-AT-CAA----A---T-C-TAG--ACATTA-----TATTTTCAATAATT-CA-ATT------------------A--A-G-------TGAATATAGTTAAGAAGCAGTCATT-GTATTCAAGGTA-G----TTTTT--CTTAGCATAAAAGCCTCAGNAATATATCTTGATGTATTACGCACTAGT
gi|12683 : GCCTA-TGGCCATTTACAAA---GAA-T--ATTTAAAC--ATATATGGCATAAACACACAAT-ATA-TAAAC-ATAGATAATACATTCACAAACAAACAGTCAAATA---T-TG------TA----AGAT-AT-CAA----A---T-C-TAG--ACATTA-----TATTTTCAATAATT-TA-TTT------------------A--A-G-------TGAATAAAGTTAAGAAGCAGTCATT-GTATTCAAGGTA-G----TTTTT--CTTAGCGTAAAAGCCTCAGTAATATATCTTGATGTATTACGCACTAGT
gi|12684 : GCCTA-TGGCCATTTACAAA---GAA-T--ATTTAAAC--AAATATGGCATAAACACACAAT-ATA-TAAAC-ATAGATAAGACATTCACAAACAAACAGTCAAATA---C-TG------TA----AGAT-AT-CAA----A---T-C-TCG--ATATTA-----TATTTTCAGTAATT-CA-ATT------------------A--A-G-------TGAATATAGTTAAGAAGCAGTCATT-GTATTCAAGGTA-G----TTTTT--CTTGGCGTAAAAGCCTCAGTAATATATCTTGATTTATTACGCACTAGT
gi|12685 : GCCTA-TGGCCATTTACAAA---GAA-T--ATTTAAAC--AAATATGGCATAGACACACAAT-ATA-TAAAC-ATAGGTAAAATATT-----ACCAATAGTCAAATA---T-TT------TG----AGAT-AT-CAA----A---T-C-TAG--ACATTA-----TATTTTCAGTAATT-CA-ATT------------------A--A-G-------TGAATATAGTTCAGAAACAGTCATT-GTATGCAAGGTA-G----TTTTT--CTTAGCGTTAAAGCCTCAGTAATATATCTTGATGTATTACGCACTAGT
gi|12686 : GCCTA-TGGCCATTTACAAA---GAA-T--ATTCAAAC--AAATATGGCATAGACACACAAT-ATA-TAAAC-ATACGTAAGATATTCACAAACAAACAGTCAAATA---T-TG------TA----AGAT-AT-CAA----A---T-C-TAG--ACATTA-----TATTTTCAATAATT-CA-TTT------------------A--A-G-------TAAATATAGTTAAGAAG----CATT-GTATTCAAGTTA-G----TTTTT--CTTAGCGTAAAAGCCTCAGTAATAGATCTTGATGTATT
gi|12687 : GCCTG-TGACCGTTTACAAA---GAA-T--ATTTAAAC--AAATATGGCATAAACACACAAT-ATA-TAAAC-ATTGGTAAAATACTCACAGACA----GTCAAATA---T-TG------TT----AGAT-AT-TAA----A---T-C-TAG--ATATTA-----TATTTTCAATAATT-CA-ATT------------------A--A-G-------TGAATATAACTAAGAAGCAGTCATT-TTATTAAAGGTA-G----TTTAA--CTTAGCACAGAGGCCTCAGTAATATATCGTGATGTATTACCCACTAG
gi|12688 : GCCTA-TGGCCATTTACCAA---TAA-T--ATTTAAAC--AAATATGGCATAGACACACAAT-AAT-TTAAC-ATAGGTTATAGACTCGTAAACA----GTCAAACA---A-TG------TA----C-AT-AT-CAA----A---T-C-TAG--ACATTG-----TATTTTCAATAATT-CA-ATT------------------C--A-G-------TGAATATAGTATAGAATCAGTCATT-GTATTTAAGGTA-G----TTTTT--CTTAGCATAAAAGCCCGAGTAATAAATATTGATGTATTTCGCACTAGT
gi|12689 : GCCTA-TGACCATTTACAAA---AAAAT--ATTTAAAC--AAATATGGCATAGACATACACT-ATA-TAAAC-ATAGTTAAAATACTCACAGACA----GTCACATA---T-GG------TA----AGAT-AT-CAA----A---T-C-TAG--ATATTGAAAATTGTTTTCAGTAATC-CA-ATT------------------A--A-G-------TGAAAATATTTAAGAAGCAGTCATT-GTATTAAAGGTA-G----TTTTT--CTTAGCATAAAAGCCCCAGTAATATATCGTGCTGTGGTACGCACTAGT
gi|12690 : GCCAA-TGGCCATTTACAAA---GAA-T--ATTTAATC--AAATATGGCTTAGACACAGAAT-ATA-TAAAC-ATGGGTAAAATACTCATTAACA----GTCAAACA---T-TG------TA----AGAT-AT-CAT----A---T-C-TGG--ACGTTA-----CATTTTCAGTAATT-CA-ATT------------------C--A-G-------TAAATATAGTTAAGAAGTAGTCATT-GTATTCAAG
gi|12691 : GCCTA-TGGCCATTTAAACT---GGA-T--ATTTAAAC--AAAGATGGCATAG--ACACAAT-ATA-AACAC-ATGGGTAATAGACTT----ATAAACAGTCAAACG---T-TG------TA----AGAT-
gi|12692 : GCTTA-TGGCCATTTACAAATC-GAA----AT--AAACTCAAATATGGCATAGACAAACAATAATATTAAAT-ACAAA-AAGATACACAC
gi|12693 : GCCTA-TGGCCATTTACACATTCAAA-TTAATTTAAA------TATGGCATAGACATACAAT--TA-TA---------TGAAATACAAACAAATACATA--CAATTA---TATG------TA----ATACAAT-CAA----A---TACATAC--ATATCA-----CATATTCAA
gi|12694 : CTA-CGGCCATTTACAAA---GAA-T--ATTTAAAC--AAATATGGCATAGACATACTGT-ATA-TAAAC-ATAGATAATAGCCTCTTAAATA----GTCAAAGA---T-TG------TA----AGAC-AT-CAA----A---T-C-TAG--ACATTA-----CATTTGCAATAATT-CA-ATT------------------C--A-G-------TGAGAATAGTTAAAATGCATTCATT-GTATTCAATGTA-G----TTTTT--CTAAGCATAAAAGCTTCAGAAATATATCTTGATTTATAACGCACTAGT
gi|12695 : CTAGTAGCCATTAACAAT---GTA-T--ATCAAAAC--AAATACCGCATGTATATACATT-ATA-TATAC-ATAGGTTATAGAC--ACG--TAAACAGTCAAGCA---G-TG------CA----AGAT-AG-CAA----T---T-C-TAG--ACATTC-----CATTTTCAATCTTT-TA-ATT------------------C--A-G-------CGGATATAGATAAGAAACAGTCATT-GTATTCGAGGTC-T----TTTTT--CTTAACATAAAACCCTC
gi|12696 : CTG-TGGTCATTTACAAT---GTT-T--ATTAAAAC--AAATGTGGCAAAGACATAAAAT-ATA-TAAAT-AT-----------------ATAAACAGCCAAACA---T-TG------TA----AGAT-AT-CAA----A---T-C-CAGATATATCA-----CATTTT-GATAATT-TATATTC-----------------C--A-G-------TGAA
gi|12697 : ATATG-CATA--CACATAAT-AGA-TAAATTATA-----TACAGTCA--AACAA-C--TTTGATA---T-TT------TA----ATA--AT-CAA----T---T-C-TAA--ACATGA-----AATGTTCAATAACT-AA-AAT------------------A--AAG-------TGAATATATCTTATAAGCAGTCATTCGTATTAAAGGTA-T----TTTTTTTCTAAGCATAAAAGCCTTAGAAATATATTTTGAAATAGTAGGCACTAattatcatgttttcatgttaaaaaaaatctattcaa
gi|12698 : CAGTCAAACAACTT-TGATATTTTA----ATA--AT-CAATTCTAAATT-C-TAA--ACATGA-----AATGTTCAATAACTAAA-ATA------------------A--A-G-------TGAATATATCTTATAAGCAGTCATTCGTATTAAAGGTATT----TTTTT--CTGAGCATAAAAGCCTTAGAAATATAATTTGAAATACTAGGCACTA
gi|12699 : atatgcatacacattatagataaattatatatCGTAAGCATACAAT-ATA-TAAAC-ACAGACACTAGACTCATAAACA----GTCAAACA---C-AG------CA----ACAT-AT-AAA----A---T-C-TAG--ACATTA-----TCTTTTAAA-AATT-AA-ATT------------------G--A-T-------TGAATACAGTTAAGAAGCAGCCATT-GTATTCTAGGTA-G----TTTTT--CTTAACATAAAAGTCTCTGAAATGTATCTTGATGTATTACGCACTAGT
gi|12700 : AC--AAATA----ATCGACATACCAT-GTA-----C-AT-GTTAACA----CATAAATAA-TAGACAAA-----T-TA------TATATCAGTT-ACACAA----A---T-----G--AAAT-G-----TATTTT---TAATT-TA-AAA------------------A--A-AAAAAAGATGAAAATATATATGAAGCAATCATT-GTATTC----TT-T----TTTTT--CTGAGCATAAAAACCTTAGAAATATATGTTGA---ATTACGCATTA
gi|12701 : ataagcatAACATTCAAACG---T-TG------TA----AGGT-AT-TAA----A---T-C---------TTA------A----CAATAATT-CA-ATT------------------T--A-G-------TGAATATAGTTAAGAAGCAGTCATT-GTATTTAGTGT--GTTCTTTCTT--CTTAGCATAATAGGCTCCGAAACATATTTTGATGTATGACGTA
gi|12702 : tgagacgtatacacatatataacagccgctttATAAACAGTCAAACA---G-CG------CA----AGAA-AT-CAA----A---T-C-TAG--ACATTA-----CATTTTAAATATTT-CA-ATTCAGTGAATATAGTTAAGAAGCA-G-------TGAATATAGTTAAGGAGCAGTCATT-GAATTCAAGGTA-G----TTTTT--CTGAGCATACACGTTTCAGAAATAAATCTTGGTATAT
gi|12703 : tatgtactcATAAGCAGTCAGACA---T-CG------CA----AGAA-AT-CAA----A---T-C-TAG------------------------ATT-CA-ATT------------------C--A-G-------TGAATTTAGTTAAGAAACAGTCATT-GAATTCAAGGTA-G----TTTTT--CT
gi|12704 : tatgtactg-CAA----A---T-C-TAA--ACATTC-----AATTTT-AATACTA-TA-ATT------------------A--AAG-------TGGATATA-TAAATAAACAGTCACT-GTATTCAATGTA-G----TTTTT--CTGACCATAAAAACCTC
Alignments
lowQualScore : 1111 222222222222222222222
lowQualScore : 2 888 2 33 33 2 2 2 1 2 1 4 2 0 2222 0 333 2 555555 4444 2 2 4444 333 2 2 22 888888 1 2 2 111111111111111111111 4 6666666 4 2 5555 33 0 1
lowQualScore : . ... . .. .. . . . . . . . . . .... . ... . ...... .... . . .... ... . . .. ...... . . . ..................... . ....... . . .... .. . .
lowQualScore : 9 999 9 99 77 4 4 4 5 1 8 1 1 4 8888 1 555 0 888888 2222 0 0 2222 555 0 0 88 000000 2 1 1 333333333333333333333 2 8888888 4 4 0000 22 2 0
consensus : GCCTA-TGGCCATTTACAAA---GAA-T--ATTTAAAC--AAATATGGCATAGACACACAAT-ATA-TAAAC-ATAGGTAANANACTCACAAACAAACAGTCAAACA---T-TG------TA----AGAT-AT-CAA----A---T-C-TAG--ACATTA-----TATTTTCAATAATT-CA-ATT------------------A--A-G-------TGAATATAGTTAAGAAGCAGTCATT-GTATTCAAGGTA-G----TTTTT--CTTAGCATAAAAGCCTCAGNAATATATCTTGATGTATTACGCACTAGT
Reference ( family-773 ) : GCCTA-TGGCCATTTACAAA---GAA-T--ATTTAAAC--AAATATGGCATAGACACACAAT-ATA-TAAAC-ATAGGTAANANACTCACAAACAAACAGTCAAACA---T-TG------TA----AGAT-AT-CAA----A---T-C-TAG--ACATTA-----TATTTTCAATAATT-CA-ATT------------------A--A-G-------TGAATATAGTTAAGAAGCAGTCATT-GTATTCAAGGTA-G----TTTTT--CTTAGCATAAAAGCCTCAGNAATATATCTTGATGTATTACGCACTAGT
gi|12683 : GCCTA-TGGCCATTTACAAA---GAA-T--ATTTAAAC--ATATATGGCATAAACACACAAT-ATA-TAAAC-ATAGATAATACATTCACAAACAAACAGTCAAATA---T-TG------TA----AGAT-AT-CAA----A---T-C-TAG--ACATTA-----TATTTTCAATAATT-TA-TTT------------------A--A-G-------TGAATAAAGTTAAGAAGCAGTCATT-GTATTCAAGGTA-G----TTTTT--CTTAGCGTAAAAGCCTCAGTAATATATCTTGATGTATTACGCACTAGT
gi|12684 : GCCTA-TGGCCATTTACAAA---GAA-T--ATTTAAAC--AAATATGGCATAAACACACAAT-ATA-TAAAC-ATAGATAAGACATTCACAAACAAACAGTCAAATA---C-TG------TA----AGAT-AT-CAA----A---T-C-TCG--ATATTA-----TATTTTCAGTAATT-CA-ATT------------------A--A-G-------TGAATATAGTTAAGAAGCAGTCATT-GTATTCAAGGTA-G----TTTTT--CTTGGCGTAAAAGCCTCAGTAATATATCTTGATTTATTACGCACTAGT
gi|12685 : GCCTA-TGGCCATTTACAAA---GAA-T--ATTTAAAC--AAATATGGCATAGACACACAAT-ATA-TAAAC-ATAGGTAAAATATT-----ACCAATAGTCAAATA---T-TT------TG----AGAT-AT-CAA----A---T-C-TAG--ACATTA-----TATTTTCAGTAATT-CA-ATT------------------A--A-G-------TGAATATAGTTCAGAAACAGTCATT-GTATGCAAGGTA-G----TTTTT--CTTAGCGTTAAAGCCTCAGTAATATATCTTGATGTATTACGCACTAGT
gi|12686 : GCCTA-TGGCCATTTACAAA---GAA-T--ATTCAAAC--AAATATGGCATAGACACACAAT-ATA-TAAAC-ATACGTAAGATATTCACAAACAAACAGTCAAATA---T-TG------TA----AGAT-AT-CAA----A---T-C-TAG--ACATTA-----TATTTTCAATAATT-CA-TTT------------------A--A-G-------TAAATATAGTTAAGAAG----CATT-GTATTCAAGTTA-G----TTTTT--CTTAGCGTAAAAGCCTCAGTAATAGATCTTGATGTATT
gi|12687 : GCCTG-TGACCGTTTACAAA---GAA-T--ATTTAAAC--AAATATGGCATAAACACACAAT-ATA-TAAAC-ATTGGTAAAATACTCACAGACA----GTCAAATA---T-TG------TT----AGAT-AT-TAA----A---T-C-TAG--ATATTA-----TATTTTCAATAATT-CA-ATT------------------A--A-G-------TGAATATAACTAAGAAGCAGTCATT-TTATTAAAGGTA-G----TTTAA--CTTAGCACAGAGGCCTCAGTAATATATCGTGATGTATTACCCACTAG
gi|12688 : GCCTA-TGGCCATTTACCAA---TAA-T--ATTTAAAC--AAATATGGCATAGACACACAAT-AAT-TTAAC-ATAGGTTATAGACTCGTAAACA----GTCAAACA---A-TG------TA----C-AT-AT-CAA----A---T-C-TAG--ACATTG-----TATTTTCAATAATT-CA-ATT------------------C--A-G-------TGAATATAGTATAGAATCAGTCATT-GTATTTAAGGTA-G----TTTTT--CTTAGCATAAAAGCCCGAGTAATAAATATTGATGTATTTCGCACTAGT
gi|12689 : GCCTA-TGACCATTTACAAA---AAAAT--ATTTAAAC--AAATATGGCATAGACATACACT-ATA-TAAAC-ATAGTTAAAATACTCACAGACA----GTCACATA---T-GG------TA----AGAT-AT-CAA----A---T-C-TAG--ATATTGAAAATTGTTTTCAGTAATC-CA-ATT------------------A--A-G-------TGAAAATATTTAAGAAGCAGTCATT-GTATTAAAGGTA-G----TTTTT--CTTAGCATAAAAGCCCCAGTAATATATCGTGCTGTGGTACGCACTAGT
gi|12690 : GCCAA-TGGCCATTTACAAA---GAA-T--ATTTAATC--AAATATGGCTTAGACACAGAAT-ATA-TAAAC-ATGGGTAAAATACTCATTAACA----GTCAAACA---T-TG------TA----AGAT-AT-CAT----A---T-C-TGG--ACGTTA-----CATTTTCAGTAATT-CA-ATT------------------C--A-G-------TAAATATAGTTAAGAAGTAGTCATT-GTATTCAAG
gi|12691 : GCCTA-TGGCCATTTAAACT---GGA-T--ATTTAAAC--AAAGATGGCATAG--ACACAAT-ATA-AACAC-ATGGGTAATAGACTT----ATAAACAGTCAAACG---T-TG------TA----AGAT-
gi|12692 : GCTTA-TGGCCATTTACAAATC-GAA----AT--AAACTCAAATATGGCATAGACAAACAATAATATTAAAT-ACAAA-AAGATACACAC
gi|12693 : GCCTA-TGGCCATTTACACATTCAAA-TTAATTTAAA------TATGGCATAGACATACAAT--TA-TA---------TGAAATACAAACAAATACATA--CAATTA---TATG------TA----ATACAAT-CAA----A---TACATAC--ATATCA-----CATATTCAA
gi|12694 : CTA-CGGCCATTTACAAA---GAA-T--ATTTAAAC--AAATATGGCATAGACATACTGT-ATA-TAAAC-ATAGATAATAGCCTCTTAAATA----GTCAAAGA---T-TG------TA----AGAC-AT-CAA----A---T-C-TAG--ACATTA-----CATTTGCAATAATT-CA-ATT------------------C--A-G-------TGAGAATAGTTAAAATGCATTCATT-GTATTCAATGTA-G----TTTTT--CTAAGCATAAAAGCTTCAGAAATATATCTTGATTTATAACGCACTAGT
gi|12695 : CTAGTAGCCATTAACAAT---GTA-T--ATCAAAAC--AAATACCGCATGTATATACATT-ATA-TATAC-ATAGGTTATAGAC--ACG--TAAACAGTCAAGCA---G-TG------CA----AGAT-AG-CAA----T---T-C-TAG--ACATTC-----CATTTTCAATCTTT-TA-ATT------------------C--A-G-------CGGATATAGATAAGAAACAGTCATT-GTATTCGAGGTC-T----TTTTT--CTTAACATAAAACCCTC
gi|12696 : CTG-TGGTCATTTACAAT---GTT-T--ATTAAAAC--AAATGTGGCAAAGACATAAAAT-ATA-TAAAT-AT-----------------ATAAACAGCCAAACA---T-TG------TA----AGAT-AT-CAA----A---T-C-CAGATATATCA-----CATTTT-GATAATT-TATATTC-----------------C--A-G-------TGAA
gi|12697 : ATATG-CATA--CACATAAT-AGA-TAAATTATA-----TACAGTCA--AACAA-C--TTTGATA---T-TT------TA----ATA--AT-CAA----T---T-C-TAA--ACATGA-----AATGTTCAATAACT-AA-AAT------------------A--AAG-------TGAATATATCTTATAAGCAGTCATTCGTATTAAAGGTA-T----TTTTTTTCTAAGCATAAAAGCCTTAGAAATATATTTTGAAATAGTAGGCACTAattatcatgttttcatgttaaaaaaaatctattcaa
gi|12698 : CAGTCAAACAACTT-TGATATTTTA----ATA--AT-CAATTCTAAATT-C-TAA--ACATGA-----AATGTTCAATAACTAAA-ATA------------------A--A-G-------TGAATATATCTTATAAGCAGTCATTCGTATTAAAGGTATT----TTTTT--CTGAGCATAAAAGCCTTAGAAATATAATTTGAAATACTAGGCACTA
gi|12699 : atatgcatacacattatagataaattatatatCGTAAGCATACAAT-ATA-TAAAC-ACAGACACTAGACTCATAAACA----GTCAAACA---C-AG------CA----ACAT-AT-AAA----A---T-C-TAG--ACATTA-----TCTTTTAAA-AATT-AA-ATT------------------G--A-T-------TGAATACAGTTAAGAAGCAGCCATT-GTATTCTAGGTA-G----TTTTT--CTTAACATAAAAGTCTCTGAAATGTATCTTGATGTATTACGCACTAGT
gi|12700 : AC--AAATA----ATCGACATACCAT-GTA-----C-AT-GTTAACA----CATAAATAA-TAGACAAA-----T-TA------TATATCAGTT-ACACAA----A---T-----G--AAAT-G-----TATTTT---TAATT-TA-AAA------------------A--A-AAAAAAGATGAAAATATATATGAAGCAATCATT-GTATTC----TT-T----TTTTT--CTGAGCATAAAAACCTTAGAAATATATGTTGA---ATTACGCATTA
gi|12701 : ataagcatAACATTCAAACG---T-TG------TA----AGGT-AT-TAA----A---T-C---------TTA------A----CAATAATT-CA-ATT------------------T--A-G-------TGAATATAGTTAAGAAGCAGTCATT-GTATTTAGTGT--GTTCTTTCTT--CTTAGCATAATAGGCTCCGAAACATATTTTGATGTATGACGTA
gi|12702 : tgagacgtatacacatatataacagccgctttATAAACAGTCAAACA---G-CG------CA----AGAA-AT-CAA----A---T-C-TAG--ACATTA-----CATTTTAAATATTT-CA-ATTCAGTGAATATAGTTAAGAAGCA-G-------TGAATATAGTTAAGGAGCAGTCATT-GAATTCAAGGTA-G----TTTTT--CTGAGCATACACGTTTCAGAAATAAATCTTGGTATAT
gi|12703 : tatgtactcATAAGCAGTCAGACA---T-CG------CA----AGAA-AT-CAA----A---T-C-TAG------------------------ATT-CA-ATT------------------C--A-G-------TGAATTTAGTTAAGAAACAGTCATT-GAATTCAAGGTA-G----TTTTT--CT
gi|12704 : tatgtactg-CAA----A---T-C-TAA--ACATTC-----AATTTT-AATACTA-TA-ATT------------------A--AAG-------TGGATATA-TAAATAAACAGTCACT-GTATTCAATGTA-G----TTTTT--CTGACCATAAAAACCTC
blockSeqs : G TTC A TA TC A T T A A G C C AACA ACT A ATATTT TATC A A TTCT AAT A A AT AAAATT C A T CAGTGAATATAGTTAAGAAGC A AAAAAGA C T TTCT TT T
blockSeqs : . TC . . . . . . A G A T C AATA . . . . . . . . . . . T C . . CC A . C . . . T
blockSeqs : . . . . . . . . A G G T C AACA . . . . . . . . . . . T C . . A . . . . . . T
blockSeqs : . . . . . . . . T G A T T AACA . . . . . . . . . . . T C . . A . . . . . . T
blockSeqs : . . . . . . . . A G T G C CATA . . . . . . . . . . . T C . . A . . . . . . T
blockSeqs : . . . . . . . . A T A T T AACA . . . . . . . . . . . T C . . A . . . . . . T
blockSeqs : . . . . . . . . G G A T C AACA . . . . . . . . . . . C C . . C . . . . . . A
blockSeqs : . . . . . . . . G G T G C AACA . . . . . . . . . . . C C . . A . . . . . . A
blockSeqs : . . . . . . . . A A G T T AACA . . . . . . . . . . . C C . . C . . . . . . A
blockSeqs : . . . . . . . . A A A T C AGCA . . . . . . . . . . . C C . . C . . . . . . A
blockSeqs : . . . . . . . . A G T G T ATA . . . . . . . . . . . C C . . C . . . . . . A
blockSeqs : . . . . . . . . A A T G T AC . . . . . . . . . . . A C . . A . . . . . . A
blockSeqs : . . . . . . . . A T T C . . . . . . . . . . . . . A A . . A . . . . . . A
blockSeqs : . . . . . . T G . . . . . . . . . . . . . T C . . G . . . . . .
blockSeqs : . . . . . C . . . . . . . . . . . . . . T A . . A . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . C . . . T . . . . . .
blockSeqs : . . . . . . . . . . . . A . . . C . . .
blockSeqs : . . . . . . . . . . . . . . . . A . .
blockSeqs : . . . . . . . . . . . . .
blockSeqCons :
originalCons : GCCTA-TGGCCATTTACAAA---GAA-T--ATTTAAAC--AAATATGGCATAGACACACAAT-ATA-TAAAC-ATAGGTAANANACTCACAAACAAACAGTCAAACA---T-TG------TA----AGAT-AT-CAA----A---T-C-TAG--ACATTA-----TATTTTCAATAATT-CA-ATT------------------A--A-G-------TGAATATAGTTAAGAAGCAGTCATT-GTATTCAAGGTA-G----TTTTT--CTTAGCATAAAAGCCTCAGNAATATATCTTGATGTATTACGCACTAGT
finalCons : GCCTA-TGGCCATTTACAAA---GAA-T--ATTTAAAC--AAATATGGCATAGACACACAAT-ATA-TAAAC-ATAGGTAANANACTCACAAACAAACAGTCAAACA---T-TG------TA----AGAT-AT-CAA----A---T-C-TAG--ACATTA-----TATTTTCAATAATT-CA-ATT------------------A--A-G-------TGAATATAGTTAAGAAGCAGTCATT-GTATTCAAGGTA-G----TTTTT--CTTAGCATAAAAGCCTCAGNAATATATCTTGATGTATTACGCACTAGT
Alignments
lowQualScore : 1111 222222222222222222222
lowQualScore : 2 888 2 33 33 2 2 2 1 2 1 4 2 0 2222 0 333 2 555555 4444 2 2 4444 333 2 2 22 888888 1 2 2 111111111111111111111 4 6666666 4 2 5555 33 0 1
lowQualScore : . ... . .. .. . . . . . . . . . .... . ... . ...... .... . . .... ... . . .. ...... . . . ..................... . ....... . . .... .. . .
lowQualScore : 9 999 9 99 77 4 4 4 5 1 8 1 1 4 8888 1 555 0 888888 2222 0 0 2222 555 0 0 88 000000 2 1 1 333333333333333333333 2 8888888 4 4 0000 22 2 0
consensus : GCCTA-TGGCCATTTACAAA---GAA-T--ATTTAAAC--AAATATGGCATAGACACACAAT-ATA-TAAAC-ATAGGTAANANACTCACAAACAAACAGTCAAACA---T-TG------TA----AGAT-AT-CAA----A---T-C-TAG--ACATTA-----TATTTTCAATAATT-CA-ATT------------------A--A-G-------TGAATATAGTTAAGAAGCAGTCATT-GTATTCAAGGTA-G----TTTTT--CTTAGCATAAAAGCCTCAGNAATATATCTTGATGTATTACGCACTAGT
Reference ( family-773 ) : GCCTA-TGGCCATTTACAAA---GAA-T--ATTTAAAC--AAATATGGCATAGACACACAAT-ATA-TAAAC-ATAGGTAANANACTCACAAACAAACAGTCAAACA---T-TG------TA----AGAT-AT-CAA----A---T-C-TAG--ACATTA-----TATTTTCAATAATT-CA-ATT------------------A--A-G-------TGAATATAGTTAAGAAGCAGTCATT-GTATTCAAGGTA-G----TTTTT--CTTAGCATAAAAGCCTCAGNAATATATCTTGATGTATTACGCACTAGT
gi|12683 : GCCTA-TGGCCATTTACAAA---GAA-T--ATTTAAAC--ATATATGGCATAAACACACAAT-ATA-TAAAC-ATAGATAATACATTCACAAACAAACAGTCAAATA---T-TG------TA----AGAT-AT-CAA----A---T-C-TAG--ACATTA-----TATTTTCAATAATT-TA-TTT------------------A--A-G-------TGAATAAAGTTAAGAAGCAGTCATT-GTATTCAAGGTA-G----TTTTT--CTTAGCGTAAAAGCCTCAGTAATATATCTTGATGTATTACGCACTAGT
gi|12684 : GCCTA-TGGCCATTTACAAA---GAA-T--ATTTAAAC--AAATATGGCATAAACACACAAT-ATA-TAAAC-ATAGATAAGACATTCACAAACAAACAGTCAAATA---C-TG------TA----AGAT-AT-CAA----A---T-C-TCG--ATATTA-----TATTTTCAGTAATT-CA-ATT------------------A--A-G-------TGAATATAGTTAAGAAGCAGTCATT-GTATTCAAGGTA-G----TTTTT--CTTGGCGTAAAAGCCTCAGTAATATATCTTGATTTATTACGCACTAGT
gi|12685 : GCCTA-TGGCCATTTACAAA---GAA-T--ATTTAAAC--AAATATGGCATAGACACACAAT-ATA-TAAAC-ATAGGTAAAATATT-----ACCAATAGTCAAATA---T-TT------TG----AGAT-AT-CAA----A---T-C-TAG--ACATTA-----TATTTTCAGTAATT-CA-ATT------------------A--A-G-------TGAATATAGTTCAGAAACAGTCATT-GTATGCAAGGTA-G----TTTTT--CTTAGCGTTAAAGCCTCAGTAATATATCTTGATGTATTACGCACTAGT
gi|12686 : GCCTA-TGGCCATTTACAAA---GAA-T--ATTCAAAC--AAATATGGCATAGACACACAAT-ATA-TAAAC-ATACGTAAGATATTCACAAACAAACAGTCAAATA---T-TG------TA----AGAT-AT-CAA----A---T-C-TAG--ACATTA-----TATTTTCAATAATT-CA-TTT------------------A--A-G-------TAAATATAGTTAAGAAG----CATT-GTATTCAAGTTA-G----TTTTT--CTTAGCGTAAAAGCCTCAGTAATAGATCTTGATGTATT
gi|12687 : GCCTG-TGACCGTTTACAAA---GAA-T--ATTTAAAC--AAATATGGCATAAACACACAAT-ATA-TAAAC-ATTGGTAAAATACTCACAGACA----GTCAAATA---T-TG------TT----AGAT-AT-TAA----A---T-C-TAG--ATATTA-----TATTTTCAATAATT-CA-ATT------------------A--A-G-------TGAATATAACTAAGAAGCAGTCATT-TTATTAAAGGTA-G----TTTAA--CTTAGCACAGAGGCCTCAGTAATATATCGTGATGTATTACCCACTAG
gi|12688 : GCCTA-TGGCCATTTACCAA---TAA-T--ATTTAAAC--AAATATGGCATAGACACACAAT-AAT-TTAAC-ATAGGTTATAGACTCGTAAACA----GTCAAACA---A-TG------TA----C-AT-AT-CAA----A---T-C-TAG--ACATTG-----TATTTTCAATAATT-CA-ATT------------------C--A-G-------TGAATATAGTATAGAATCAGTCATT-GTATTTAAGGTA-G----TTTTT--CTTAGCATAAAAGCCCGAGTAATAAATATTGATGTATTTCGCACTAGT
gi|12689 : GCCTA-TGACCATTTACAAA---AAAAT--ATTTAAAC--AAATATGGCATAGACATACACT-ATA-TAAAC-ATAGTTAAAATACTCACAGACA----GTCACATA---T-GG------TA----AGAT-AT-CAA----A---T-C-TAG--ATATTGAAAATTGTTTTCAGTAATC-CA-ATT------------------A--A-G-------TGAAAATATTTAAGAAGCAGTCATT-GTATTAAAGGTA-G----TTTTT--CTTAGCATAAAAGCCCCAGTAATATATCGTGCTGTGGTACGCACTAGT
gi|12690 : GCCAA-TGGCCATTTACAAA---GAA-T--ATTTAATC--AAATATGGCTTAGACACAGAAT-ATA-TAAAC-ATGGGTAAAATACTCATTAACA----GTCAAACA---T-TG------TA----AGAT-AT-CAT----A---T-C-TGG--ACGTTA-----CATTTTCAGTAATT-CA-ATT------------------C--A-G-------TAAATATAGTTAAGAAGTAGTCATT-GTATTCAAG
gi|12691 : GCCTA-TGGCCATTTAAACT---GGA-T--ATTTAAAC--AAAGATGGCATAG--ACACAAT-ATA-AACAC-ATGGGTAATAGACTT----ATAAACAGTCAAACG---T-TG------TA----AGAT-
gi|12692 : GCTTA-TGGCCATTTACAAATC-GAA----AT--AAACTCAAATATGGCATAGACAAACAATAATATTAAAT-ACAAA-AAGATACACAC
gi|12693 : GCCTA-TGGCCATTTACACATTCAAA-TTAATTTAAA------TATGGCATAGACATACAAT--TA-TA---------TGAAATACAAACAAATACATA--CAATTA---TATG------TA----ATACAAT-CAA----A---TACATAC--ATATCA-----CATATTCAA
gi|12694 : CTA-CGGCCATTTACAAA---GAA-T--ATTTAAAC--AAATATGGCATAGACATACTGT-ATA-TAAAC-ATAGATAATAGCCTCTTAAATA----GTCAAAGA---T-TG------TA----AGAC-AT-CAA----A---T-C-TAG--ACATTA-----CATTTGCAATAATT-CA-ATT------------------C--A-G-------TGAGAATAGTTAAAATGCATTCATT-GTATTCAATGTA-G----TTTTT--CTAAGCATAAAAGCTTCAGAAATATATCTTGATTTATAACGCACTAGT
gi|12695 : CTAGTAGCCATTAACAAT---GTA-T--ATCAAAAC--AAATACCGCATGTATATACATT-ATA-TATAC-ATAGGTTATAGAC--ACG--TAAACAGTCAAGCA---G-TG------CA----AGAT-AG-CAA----T---T-C-TAG--ACATTC-----CATTTTCAATCTTT-TA-ATT------------------C--A-G-------CGGATATAGATAAGAAACAGTCATT-GTATTCGAGGTC-T----TTTTT--CTTAACATAAAACCCTC
gi|12696 : CTG-TGGTCATTTACAAT---GTT-T--ATTAAAAC--AAATGTGGCAAAGACATAAAAT-ATA-TAAAT-AT-----------------ATAAACAGCCAAACA---T-TG------TA----AGAT-AT-CAA----A---T-C-CAGATATATCA-----CATTTT-GATAATT-TATATTC-----------------C--A-G-------TGAA
gi|12697 : ATATG-CATA--CACATAAT-AGA-TAAATTATA-----TACAGTCA--AACAA-C--TTTGATA---T-TT------TA----ATA--AT-CAA----T---T-C-TAA--ACATGA-----AATGTTCAATAACT-AA-AAT------------------A--AAG-------TGAATATATCTTATAAGCAGTCATTCGTATTAAAGGTA-T----TTTTTTTCTAAGCATAAAAGCCTTAGAAATATATTTTGAAATAGTAGGCACTAattatcatgttttcatgttaaaaaaaatctattcaa
gi|12698 : CAGTCAAACAACTT-TGATATTTTA----ATA--AT-CAATTCTAAATT-C-TAA--ACATGA-----AATGTTCAATAACTAAA-ATA------------------A--A-G-------TGAATATATCTTATAAGCAGTCATTCGTATTAAAGGTATT----TTTTT--CTGAGCATAAAAGCCTTAGAAATATAATTTGAAATACTAGGCACTA
gi|12699 : atatgcatacacattatagataaattatatatCGTAAGCATACAAT-ATA-TAAAC-ACAGACACTAGACTCATAAACA----GTCAAACA---C-AG------CA----ACAT-AT-AAA----A---T-C-TAG--ACATTA-----TCTTTTAAA-AATT-AA-ATT------------------G--A-T-------TGAATACAGTTAAGAAGCAGCCATT-GTATTCTAGGTA-G----TTTTT--CTTAACATAAAAGTCTCTGAAATGTATCTTGATGTATTACGCACTAGT
gi|12700 : AC--AAATA----ATCGACATACCAT-GTA-----C-AT-GTTAACA----CATAAATAA-TAGACAAA-----T-TA------TATATCAGTT-ACACAA----A---T-----G--AAAT-G-----TATTTT---TAATT-TA-AAA------------------A--A-AAAAAAGATGAAAATATATATGAAGCAATCATT-GTATTC----TT-T----TTTTT--CTGAGCATAAAAACCTTAGAAATATATGTTGA---ATTACGCATTA
gi|12701 : ataagcatAACATTCAAACG---T-TG------TA----AGGT-AT-TAA----A---T-C---------TTA------A----CAATAATT-CA-ATT------------------T--A-G-------TGAATATAGTTAAGAAGCAGTCATT-GTATTTAGTGT--GTTCTTTCTT--CTTAGCATAATAGGCTCCGAAACATATTTTGATGTATGACGTA
gi|12702 : tgagacgtatacacatatataacagccgctttATAAACAGTCAAACA---G-CG------CA----AGAA-AT-CAA----A---T-C-TAG--ACATTA-----CATTTTAAATATTT-CA-ATTCAGTGAATATAGTTAAGAAGCA-G-------TGAATATAGTTAAGGAGCAGTCATT-GAATTCAAGGTA-G----TTTTT--CTGAGCATACACGTTTCAGAAATAAATCTTGGTATAT
gi|12703 : tatgtactcATAAGCAGTCAGACA---T-CG------CA----AGAA-AT-CAA----A---T-C-TAG------------------------ATT-CA-ATT------------------C--A-G-------TGAATTTAGTTAAGAAACAGTCATT-GAATTCAAGGTA-G----TTTTT--CT
gi|12704 : tatgtactg-CAA----A---T-C-TAA--ACATTC-----AATTTT-AATACTA-TA-ATT------------------A--AAG-------TGGATATA-TAAATAAACAGTCACT-GTATTCAATGTA-G----TTTTT--CTGACCATAAAAACCTC